ANNOVAR Version: $LastChangedDate: 2011-11-28 07:16:14 -0800 (Mon, 28 Nov 2011) $ ANNOVAR Information: For questions, comments, documentation, bug reports and program update, please visit http://www.openbioinformatics.org/annovar/ ANNOVAR Command: ./annotate_variation.pl -dbtype tfbs -regionanno 1000g20101123.txt -buildver hg19 humandb/ ANNOVAR Started: Sun Jan 15 18:04:47 2012 NOTICE: Reading annotation database humandb/hg19_tfbsConsSites.txt ... Done with 5797266 regions NOTICE: Finished processing 1000000 variants in queryfile NOTICE: Finished processing 2000000 variants in queryfile NOTICE: Finished processing 3000000 variants in queryfile NOTICE: Finished processing 4000000 variants in queryfile NOTICE: Finished processing 5000000 variants in queryfile NOTICE: Finished processing 6000000 variants in queryfile NOTICE: Finished processing 7000000 variants in queryfile NOTICE: Finished processing 8000000 variants in queryfile NOTICE: Finished processing 9000000 variants in queryfile NOTICE: Finished processing 10000000 variants in queryfile NOTICE: Finished processing 11000000 variants in queryfile NOTICE: Finished processing 12000000 variants in queryfile NOTICE: Finished processing 13000000 variants in queryfile NOTICE: Finished processing 14000000 variants in queryfile NOTICE: Finished processing 15000000 variants in queryfile NOTICE: Finished processing 16000000 variants in queryfile NOTICE: Finished processing 17000000 variants in queryfile NOTICE: Finished processing 18000000 variants in queryfile NOTICE: Finished processing 19000000 variants in queryfile NOTICE: Finished processing 20000000 variants in queryfile NOTICE: Finished processing 21000000 variants in queryfile NOTICE: Finished processing 22000000 variants in queryfile NOTICE: Finished processing 23000000 variants in queryfile NOTICE: Finished processing 24000000 variants in queryfile NOTICE: Finished processing 25000000 variants in queryfile NOTICE: Finished processing 26000000 variants in queryfile NOTICE: Finished processing 27000000 variants in queryfile NOTICE: Finished processing 28000000 variants in queryfile NOTICE: Finished processing 29000000 variants in queryfile NOTICE: Finished processing 30000000 variants in queryfile NOTICE: Finished processing 31000000 variants in queryfile NOTICE: Finished processing 32000000 variants in queryfile NOTICE: Finished processing 33000000 variants in queryfile NOTICE: Finished processing 34000000 variants in queryfile NOTICE: Finished processing 35000000 variants in queryfile NOTICE: Finished processing 36000000 variants in queryfile NOTICE: Finished processing 37000000 variants in queryfile NOTICE: Finished processing 38000000 variants in queryfile NOTICE: Finished processing 39000000 variants in queryfile NOTICE: Finished processing 40000000 variants in queryfile NOTICE: Finished region-based annotation on 40664032 genetic variants in 1000g20101123.txt (including 5497 with invalid format written to 1000g20101123.txt.invalid_input) NOTICE: Output files were written to 1000g20101123.txt.hg19_tfbsConsSites