1092 10000 1 121229281 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121229283 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6295;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121229314 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0551;AVGPOST=0.9994;RSQ=0.9952;ERATE=0.0004;THETA=0.0004;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 121229436 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0006;AVGPOST=0.9991;RSQ=0.3916;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121229477 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7153;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121229561 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7277;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121229762 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.934;LDAF=0.0146;AVGPOST=0.9962;RSQ=0.9032;ERATE=0.0003;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 121229783 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0107;AVGPOST=0.9985;RSQ=0.9520;ERATE=0.0003;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 121229795 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121229887 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5879;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121229986 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0550;AVGPOST=0.9994;RSQ=0.9950;ERATE=0.0004;THETA=0.0007;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 121230021 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121230022 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121230367 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7511;ERATE=0.0005;THETA=0.0039;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121230399 . TA T 38 PASS INDEL;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7439;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121230509 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0410;AVGPOST=0.9966;RSQ=0.9745;ERATE=0.0003;THETA=0.0006;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 121230588 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5127;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121230597 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121230740 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0534;AVGPOST=0.9992;RSQ=0.9937;ERATE=0.0005;THETA=0.0005;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 121230754 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7089;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121230790 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.984;LDAF=0.2756;AVGPOST=0.9893;RSQ=0.9807;ERATE=0.0006;THETA=0.0005;AC=602;AN=2184 GT:DS:GL:BD 0.27564102 0 1 121230796 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6798;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121230812 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121230963 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0044;AVGPOST=0.9993;RSQ=0.9319;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 121230999 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0021;AVGPOST=0.9988;RSQ=0.7895;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121231002 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7625;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121231112 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8872;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121231153 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0541;AVGPOST=0.9995;RSQ=0.9966;ERATE=0.0003;THETA=0.0006;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 121231229 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0540;AVGPOST=0.9999;RSQ=0.9992;ERATE=0.0003;THETA=0.0005;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 121231299 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0540;AVGPOST=0.9997;RSQ=0.9974;ERATE=0.0003;THETA=0.0007;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 121231324 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121231382 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121231419 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8496;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121231420 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.6322;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121231474 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6999;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121231528 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121231542 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8235;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121231569 . TGA T 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6875;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121231739 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121231855 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121231905 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8873;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121231982 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121232045 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0311;AVGPOST=0.9965;RSQ=0.9590;ERATE=0.0004;THETA=0.0010;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 121232097 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5709;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121232106 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7905;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121232324 . AT A 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.5248;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121232420 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8653;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121232537 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8459;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121232538 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0050;AVGPOST=0.9953;RSQ=0.6534;ERATE=0.0005;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 121232554 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.677;LDAF=0.0039;AVGPOST=0.9958;RSQ=0.5566;ERATE=0.0004;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121232588 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0555;AVGPOST=0.9983;RSQ=0.9865;ERATE=0.0005;THETA=0.0008;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 121232770 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0033;AVGPOST=0.9990;RSQ=0.8635;ERATE=0.0004;THETA=0.0033;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121232787 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.535;LDAF=0.0046;AVGPOST=0.9943;RSQ=0.5123;ERATE=0.0005;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121232919 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0047;AVGPOST=0.9994;RSQ=0.9391;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121232930 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6620;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121233007 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0054;AVGPOST=0.9995;RSQ=0.9610;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 121233107 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121233160 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0028;AVGPOST=0.9973;RSQ=0.6167;ERATE=0.0011;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121233257 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7089;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121233266 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121233278 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0042;AVGPOST=0.9978;RSQ=0.7683;ERATE=0.0005;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121233353 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7962;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121233513 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0054;AVGPOST=0.9995;RSQ=0.9555;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 121233617 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0021;AVGPOST=0.9982;RSQ=0.7222;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121233838 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.790;LDAF=0.0036;AVGPOST=0.9980;RSQ=0.7880;ERATE=0.0012;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121233890 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0049;AVGPOST=0.9993;RSQ=0.9430;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121233895 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7946;ERATE=0.0006;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121234146 . T TA 133 PASS INDEL;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6786;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121234282 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121234668 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9599;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121234734 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.728;LDAF=0.0019;AVGPOST=0.9977;RSQ=0.5688;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121235077 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.753;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3928;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121235209 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0039;AVGPOST=0.9994;RSQ=0.9278;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121235270 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5662;ERATE=0.0004;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121235378 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.6749;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121235386 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121235515 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5294;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121235532 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6494;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121235536 . CTCTT C 80 PASS INDEL;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0020;AVGPOST=0.9975;RSQ=0.5583;ERATE=0.0004;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121235577 . TA T 76 PASS INDEL;BAVGPOST=0.999;BRSQ=0.388;LDAF=0.0024;AVGPOST=0.9960;RSQ=0.3252;ERATE=0.0009;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121235671 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8156;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121235768 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6714;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121235998 . T TTTTA 951 PASS INDEL;BAVGPOST=0.993;BRSQ=0.579;LDAF=0.0142;AVGPOST=0.9858;RSQ=0.6431;ERATE=0.0006;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 121236110 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0750;AVGPOST=0.9958;RSQ=0.9761;ERATE=0.0004;THETA=0.0010;AC=161;AN=2184 GT:DS:GL:BD 0.07371795 0 1 121236254 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5398;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121236297 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0040;AVGPOST=0.9984;RSQ=0.8442;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121236497 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8057;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121236587 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121236634 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0022;AVGPOST=0.9974;RSQ=0.5364;ERATE=0.0006;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121236739 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0002;AVGPOST=0.9996;RSQ=0.0497;ERATE=0.0003;THETA=0.0008;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 121236832 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121236833 . CA C 152 PASS INDEL;BAVGPOST=0.999;BRSQ=0.787;LDAF=0.0036;AVGPOST=0.9970;RSQ=0.6610;ERATE=0.0005;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121237030 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5068;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121237048 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.4779;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121237117 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8065;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121237156 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.890;LDAF=0.0242;AVGPOST=0.9920;RSQ=0.8668;ERATE=0.0006;THETA=0.0010;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 121237230 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0030;AVGPOST=0.9981;RSQ=0.7348;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121237245 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0552;AVGPOST=0.9979;RSQ=0.9855;ERATE=0.0003;THETA=0.0006;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 121237303 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0041;AVGPOST=0.9989;RSQ=0.8782;ERATE=0.0005;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121237340 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5249;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121237447 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.5332;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121237515 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.893;LDAF=0.0160;AVGPOST=0.9941;RSQ=0.8489;ERATE=0.0006;THETA=0.0008;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 121237732 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0073;AVGPOST=0.9981;RSQ=0.8990;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 121237774 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5409;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121237933 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121237941 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0061;AVGPOST=0.9992;RSQ=0.9395;ERATE=0.0004;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 121238064 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6769;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121238104 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0544;AVGPOST=0.9992;RSQ=0.9936;ERATE=0.0004;THETA=0.0005;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 121238197 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.974;LDAF=0.0546;AVGPOST=0.9988;RSQ=0.9910;ERATE=0.0004;THETA=0.0007;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 121238202 . C CT 66 PASS INDEL;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0026;AVGPOST=0.9981;RSQ=0.6700;ERATE=0.0012;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121238206 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0019;AVGPOST=0.9978;RSQ=0.5821;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121238279 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.978;LDAF=0.0958;AVGPOST=0.9909;RSQ=0.9570;ERATE=0.0009;THETA=0.0002;AC=207;AN=2184 GT:DS:GL:BD 0.09478022 0 1 121238489 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.803;LDAF=0.0035;AVGPOST=0.9978;RSQ=0.7502;ERATE=0.0006;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121238578 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5345;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121238651 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.776;LDAF=0.0026;AVGPOST=0.9987;RSQ=0.7981;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121238873 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0054;AVGPOST=0.9993;RSQ=0.9460;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 121238910 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.987;LDAF=0.2807;AVGPOST=0.9946;RSQ=0.9895;ERATE=0.0007;THETA=0.0006;AC=610;AN=2184 GT:DS:GL:BD 0.27930403 0 1 121239018 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.942;LDAF=0.0178;AVGPOST=0.9926;RSQ=0.8297;ERATE=0.0004;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 121239123 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.545;LDAF=0.0021;AVGPOST=0.9972;RSQ=0.4040;ERATE=0.0007;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121239180 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.893;LDAF=0.0571;AVGPOST=0.9921;RSQ=0.9433;ERATE=0.0014;THETA=0.0004;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 121239251 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.9744;AVGPOST=0.9988;RSQ=0.9790;ERATE=0.0004;THETA=0.0004;AC=2129;AN=2184 GT:DS:GL:BD 0.97481686 1 1 121239320 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6141;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121239461 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0031;AVGPOST=0.9963;RSQ=0.5006;ERATE=0.0009;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121239495 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5715;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121239636 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4888;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121239762 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0023;AVGPOST=0.9988;RSQ=0.7509;ERATE=0.0007;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121239763 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0544;AVGPOST=0.9996;RSQ=0.9970;ERATE=0.0003;THETA=0.0007;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 121239769 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0023;AVGPOST=0.9972;RSQ=0.5351;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121239818 rs76594297 TG T 48799 PASS INDEL;BAVGPOST=0.993;BRSQ=0.993;LDAF=0.5385;AVGPOST=0.9931;RSQ=0.9892;ERATE=0.0008;THETA=0.0005;AC=1180;AN=2184 GT:DS:GL:BD 0.54029304 1 1 121239965 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9583;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 121239985 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0042;AVGPOST=0.9995;RSQ=0.9496;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 121240037 . TG T 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5270;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121240284 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6611;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121240351 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6578;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121240390 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6343;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121240394 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0048;AVGPOST=0.9996;RSQ=0.9592;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121240428 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0023;AVGPOST=0.9988;RSQ=0.8020;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121240432 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6256;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121240631 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6377;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121240760 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6077;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121240774 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9525;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121240790 . CCAAA C 1624 PASS INDEL;BAVGPOST=0.989;BRSQ=0.785;LDAF=0.0392;AVGPOST=0.9670;RSQ=0.6438;ERATE=0.0097;THETA=0.0005;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 121240823 . CA C 1603 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0238;AVGPOST=0.9977;RSQ=0.9621;ERATE=0.0004;THETA=0.0007;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 121240824 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.676;LDAF=0.0087;AVGPOST=0.9927;RSQ=0.7007;ERATE=0.0009;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 121240862 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0010;AVGPOST=0.9987;RSQ=0.4322;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121240876 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121240878 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121240996 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.538;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121240997 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0093;AVGPOST=0.9952;RSQ=0.8162;ERATE=0.0016;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 121241046 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0545;AVGPOST=0.9996;RSQ=0.9970;ERATE=0.0004;THETA=0.0005;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 121241136 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9408;ERATE=0.0004;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121241197 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.689;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121241286 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0543;AVGPOST=0.9996;RSQ=0.9971;ERATE=0.0003;THETA=0.0007;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 121241330 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0045;AVGPOST=0.9999;RSQ=0.9852;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121241397 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7012;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121241404 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7787;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121241486 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121241592 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0053;AVGPOST=0.9973;RSQ=0.8003;ERATE=0.0008;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121241619 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5817;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121241666 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.824;LDAF=0.0055;AVGPOST=0.9964;RSQ=0.7865;ERATE=0.0004;THETA=0.0011;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121241696 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.764;LDAF=0.0040;AVGPOST=0.9980;RSQ=0.8073;ERATE=0.0005;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121241709 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.7991;ERATE=0.0006;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121241765 . AG A 200 PASS INDEL;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7853;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121241903 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.6778;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121241910 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.733;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6941;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121242111 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5598;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121242124 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0061;AVGPOST=0.9996;RSQ=0.9678;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 121242137 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5494;AVGPOST=0.9929;RSQ=0.9895;ERATE=0.0007;THETA=0.0005;AC=1202;AN=2184 GT:DS:GL:BD 0.55036628 1 1 121242146 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0216;AVGPOST=0.9975;RSQ=0.9585;ERATE=0.0003;THETA=0.0023;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 121242272 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.973;LDAF=0.0557;AVGPOST=0.9983;RSQ=0.9877;ERATE=0.0006;THETA=0.0003;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 121242314 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2841;AVGPOST=0.9979;RSQ=0.9957;ERATE=0.0004;THETA=0.0003;AC=617;AN=2184 GT:DS:GL:BD 0.28250915 0 1 121242348 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.754;LDAF=0.0024;AVGPOST=0.9968;RSQ=0.5210;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121242370 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0545;AVGPOST=0.9987;RSQ=0.9898;ERATE=0.0005;THETA=0.0005;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 121242375 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.671;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6277;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121242495 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5482;AVGPOST=0.9962;RSQ=0.9942;ERATE=0.0006;THETA=0.0004;AC=1200;AN=2184 GT:DS:GL:BD 0.54945058 1 1 121242581 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5792;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121242662 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.891;LDAF=0.0096;AVGPOST=0.9974;RSQ=0.8824;ERATE=0.0004;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 121242729 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5584;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121242857 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0060;AVGPOST=0.9984;RSQ=0.9007;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 121243010 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121243279 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.975;LDAF=0.0554;AVGPOST=0.9996;RSQ=0.9971;ERATE=0.0003;THETA=0.0004;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 121243294 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6122;ERATE=0.0003;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121243394 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.7861;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121243436 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0547;AVGPOST=0.9985;RSQ=0.9910;ERATE=0.0004;THETA=0.0006;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 121243450 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3420;AVGPOST=0.9975;RSQ=0.9959;ERATE=0.0003;THETA=0.0005;AC=745;AN=2184 GT:DS:GL:BD 0.34111720 0 1 121243487 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0053;AVGPOST=0.9974;RSQ=0.8275;ERATE=0.0007;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 121243723 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8019;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121243734 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.7006;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121243810 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7393;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121243904 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0016;AVGPOST=0.9982;RSQ=0.5787;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121244005 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.780;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121244028 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7217;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121244040 . T TGCA 183 PASS INDEL;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0022;AVGPOST=0.9977;RSQ=0.5842;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121244088 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.915;LDAF=0.0231;AVGPOST=0.9906;RSQ=0.8484;ERATE=0.0006;THETA=0.0006;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 121244145 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0003;THETA=0.0014;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121244221 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0018;AVGPOST=0.9999;RSQ=0.9762;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121244258 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8665;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121244269 . A AG 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4653;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121244308 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121244357 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121244423 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121244438 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0156;AVGPOST=0.9999;RSQ=0.9959;ERATE=0.0005;THETA=0.0006;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 121244593 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121244623 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121244714 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121244848 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121244962 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0580;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0006;THETA=0.0006;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 121245064 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=1.0000;RSQ=0.9957;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 121245132 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0013;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121245141 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121245186 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121245283 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121245361 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121245517 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9499;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121245570 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121245681 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9294;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121245684 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121245808 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0554;AVGPOST=0.9993;RSQ=0.9949;ERATE=0.0004;THETA=0.0003;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 121245914 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.758;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121245943 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5650;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121245992 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4720;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121246032 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121246117 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7349;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121246131 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121246326 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6662;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121246334 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.9872;AVGPOST=0.9985;RSQ=0.9540;ERATE=0.0004;THETA=0.0004;AC=2157;AN=2184 GT:DS:GL:BD 0.98763734 1 1 121246383 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6371;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121246442 . C CA 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7052;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121246452 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9268;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121246648 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0014;AVGPOST=0.9993;RSQ=0.8036;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121246759 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0045;AVGPOST=0.9993;RSQ=0.9470;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121246940 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7946;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121246965 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8620;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121246983 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7770;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121247079 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0563;AVGPOST=0.9986;RSQ=0.9914;ERATE=0.0005;THETA=0.0007;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 121247096 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0008;AVGPOST=0.9989;RSQ=0.3862;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121247127 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.0557;AVGPOST=0.9992;RSQ=0.9943;ERATE=0.0003;THETA=0.0008;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 121247132 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9880;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121247160 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.8139;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121247292 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9997;RSQ=0.9728;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121247360 . G GA 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6929;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121247468 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5492;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121247654 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9576;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121247809 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0027;AVGPOST=0.9981;RSQ=0.7206;ERATE=0.0007;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121247849 . AC A 166 PASS INDEL;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0018;AVGPOST=0.9998;RSQ=0.9523;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121248063 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121248138 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0036;AVGPOST=0.9978;RSQ=0.8005;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121248178 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121248188 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6489;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121248268 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6265;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121248296 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0060;AVGPOST=0.9997;RSQ=0.9758;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 121248319 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9827;ERATE=0.0003;THETA=0.0012;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 121248367 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121248455 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7819;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121248533 . AT A 149 PASS INDEL;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6969;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121248561 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6033;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121248625 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0554;AVGPOST=0.9998;RSQ=0.9981;ERATE=0.0003;THETA=0.0007;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 121248733 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5951;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121248844 . GAAC G 298 PASS INDEL;BAVGPOST=0.992;BRSQ=0.686;LDAF=0.0163;AVGPOST=0.9816;RSQ=0.5516;ERATE=0.0047;THETA=0.0009;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 121248946 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8839;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121248995 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121249040 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0064;AVGPOST=0.9974;RSQ=0.8285;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 121249069 . C CT 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.4956;ERATE=0.0004;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121249184 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5240;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121249196 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.812;LDAF=0.0014;AVGPOST=0.9994;RSQ=0.8193;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121249396 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0029;AVGPOST=0.9988;RSQ=0.8343;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121249512 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9829;ERATE=0.0003;THETA=0.0022;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 121249579 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5112;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121249695 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0549;AVGPOST=0.9988;RSQ=0.9935;ERATE=0.0003;THETA=0.0006;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 121249698 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0032;AVGPOST=0.9970;RSQ=0.6603;ERATE=0.0004;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121249746 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6736;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121249766 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5567;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121249847 . C CA 43 PASS INDEL;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5587;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121250169 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.8134;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121250218 . CG C 68 PASS INDEL;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7136;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121250304 . G GA 706 PASS INDEL;BAVGPOST=0.987;BRSQ=0.665;LDAF=0.0283;AVGPOST=0.9683;RSQ=0.5419;ERATE=0.0104;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 121250384 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0027;AVGPOST=0.9984;RSQ=0.7227;ERATE=0.0008;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121250412 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121250416 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9746;ERATE=0.0004;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 121250526 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4932;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121250551 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121250682 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6599;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121250722 . CTA C 48 PASS INDEL;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4324;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121250860 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121250931 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6380;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121250973 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.749;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6601;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121251086 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1435;AVGPOST=0.9948;RSQ=0.9839;ERATE=0.0005;THETA=0.0005;AC=310;AN=2184 GT:DS:GL:BD 0.14194140 0 1 121251103 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0018;AVGPOST=0.9985;RSQ=0.6462;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121251141 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.677;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7655;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121251368 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6594;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121251484 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0027;AVGPOST=0.9961;RSQ=0.5476;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121251488 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7533;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121251493 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.584;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7568;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121251538 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8091;ERATE=0.0010;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121251736 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=0.9993;RSQ=0.9415;ERATE=0.0004;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 121251744 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0017;AVGPOST=0.9987;RSQ=0.7409;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121251769 . G GA 2867 PASS INDEL;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0298;AVGPOST=0.9966;RSQ=0.9588;ERATE=0.0003;THETA=0.0040;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 121251791 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0542;AVGPOST=0.9990;RSQ=0.9925;ERATE=0.0003;THETA=0.0005;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 121251801 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5736;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121251842 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.7492;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121251880 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5640;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121251933 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121252060 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.2820;AVGPOST=0.9915;RSQ=0.9855;ERATE=0.0006;THETA=0.0012;AC=618;AN=2184 GT:DS:GL:BD 0.28296703 0 1 121252124 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5805;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121252186 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0020;AVGPOST=0.9985;RSQ=0.6786;ERATE=0.0011;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121252268 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6850;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121252279 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121252378 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0535;AVGPOST=0.9989;RSQ=0.9914;ERATE=0.0004;THETA=0.0006;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 121252451 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9995;RSQ=0.9485;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121252472 . T TC 17183 PASS INDEL;BAVGPOST=0.980;BRSQ=0.968;LDAF=0.5425;AVGPOST=0.9799;RSQ=0.9708;ERATE=0.0026;THETA=0.0004;AC=1198;AN=2184 GT:DS:GL:BD 0.54853481 1 1 121252474 rs57734240 C CT 65180 PASS INDEL;BAVGPOST=0.990;BRSQ=0.983;LDAF=0.5476;AVGPOST=0.9882;RSQ=0.9830;ERATE=0.0005;THETA=0.0004;AC=1200;AN=2184 GT:DS:GL:BD 0.54945058 1 1 121252590 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4466;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121252671 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0532;AVGPOST=0.9994;RSQ=0.9951;ERATE=0.0003;THETA=0.0007;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 121252788 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0020;AVGPOST=0.9989;RSQ=0.7934;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121252797 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0536;AVGPOST=0.9985;RSQ=0.9881;ERATE=0.0005;THETA=0.0006;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 121252842 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0532;AVGPOST=0.9996;RSQ=0.9967;ERATE=0.0003;THETA=0.0005;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 121252878 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0067;AVGPOST=0.9988;RSQ=0.9288;ERATE=0.0004;THETA=0.0009;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 121252891 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0030;AVGPOST=0.9984;RSQ=0.8018;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121253038 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9905;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121253052 . C CTA 241 PASS INDEL;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0041;AVGPOST=0.9979;RSQ=0.7607;ERATE=0.0007;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121253420 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8864;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121253433 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9133;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121253434 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.880;LDAF=0.0059;AVGPOST=0.9978;RSQ=0.8361;ERATE=0.0004;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 121253441 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.880;LDAF=0.0068;AVGPOST=0.9988;RSQ=0.9265;ERATE=0.0003;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 121253508 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6748;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121253512 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8374;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121253586 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121253707 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121253964 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.6583;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121254081 . CAG C 209 PASS INDEL;BAVGPOST=0.989;BRSQ=0.602;LDAF=0.0258;AVGPOST=0.9688;RSQ=0.5139;ERATE=0.0081;THETA=0.0008;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 121254151 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.959;LDAF=0.0253;AVGPOST=0.9960;RSQ=0.9425;ERATE=0.0009;THETA=0.0012;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 121254183 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0036;AVGPOST=0.9983;RSQ=0.7938;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121254203 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.946;LDAF=0.0412;AVGPOST=0.9899;RSQ=0.9085;ERATE=0.0007;THETA=0.0012;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 121254321 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0025;AVGPOST=0.9987;RSQ=0.7985;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121254387 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0019;AVGPOST=0.9977;RSQ=0.5654;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121254392 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0535;AVGPOST=0.9989;RSQ=0.9917;ERATE=0.0004;THETA=0.0003;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 121254475 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121254481 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.955;LDAF=0.0435;AVGPOST=0.9950;RSQ=0.9541;ERATE=0.0005;THETA=0.0010;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 121254509 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7568;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121254573 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0016;AVGPOST=0.9983;RSQ=0.5572;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121254607 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121254653 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.9518;AVGPOST=0.9974;RSQ=0.9787;ERATE=0.0004;THETA=0.0002;AC=2081;AN=2184 GT:DS:GL:BD 0.95283884 1 1 121254853 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.891;LDAF=0.0091;AVGPOST=0.9977;RSQ=0.8942;ERATE=0.0008;THETA=0.0015;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 121254914 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.628;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.3806;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121254925 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121255262 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0005;AVGPOST=0.9992;RSQ=0.3972;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121255332 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0024;AVGPOST=0.9978;RSQ=0.6210;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121255393 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4916;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121255460 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.695;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8453;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121255564 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0059;AVGPOST=0.9987;RSQ=0.9154;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 121255683 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5687;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121255731 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6651;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121255777 . TG T 770 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9676;ERATE=0.0004;THETA=0.0012;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121255780 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.3533;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121255876 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0492;AVGPOST=0.9962;RSQ=0.9744;ERATE=0.0004;THETA=0.0004;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 121255940 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8889;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121255964 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121255974 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0473;AVGPOST=0.9987;RSQ=0.9896;ERATE=0.0003;THETA=0.0003;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 121256116 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0021;AVGPOST=0.9977;RSQ=0.6132;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121256216 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.2801;AVGPOST=0.9915;RSQ=0.9834;ERATE=0.0004;THETA=0.0007;AC=609;AN=2184 GT:DS:GL:BD 0.27884614 0 1 121256382 . GAAGA G 231 PASS INDEL;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8299;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121256431 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.605;LDAF=0.0054;AVGPOST=0.9943;RSQ=0.5954;ERATE=0.0028;THETA=0.0025;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121256542 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6919;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121256622 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121256640 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.797;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6747;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121256735 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6524;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121256778 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8705;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121256797 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5192;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121256905 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7111;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121256951 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.699;LDAF=0.0044;AVGPOST=0.9972;RSQ=0.7457;ERATE=0.0006;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121257027 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.401;LDAF=0.9634;AVGPOST=0.9464;RSQ=0.4152;ERATE=0.0083;THETA=0.0005;AC=2142;AN=2184 GT:DS:GL:BD 0.98076922 1 1 121257141 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7719;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121257244 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8728;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121257347 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121257349 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7329;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121257398 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6122;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121257424 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0544;AVGPOST=0.9987;RSQ=0.9901;ERATE=0.0005;THETA=0.0008;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 121257490 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6100;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121257518 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7629;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121257747 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0058;AVGPOST=0.9991;RSQ=0.9384;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 121257781 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0238;AVGPOST=0.9976;RSQ=0.9650;ERATE=0.0004;THETA=0.0006;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 121257981 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0049;AVGPOST=0.9993;RSQ=0.9459;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121258028 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.887;LDAF=0.0055;AVGPOST=0.9982;RSQ=0.8731;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 121258273 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0061;AVGPOST=0.9981;RSQ=0.8836;ERATE=0.0005;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 121258463 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8916;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121258479 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.5533;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121258491 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4529;ERATE=0.0004;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121258599 rs71074460 G GCTCT 108199 PASS INDEL;BAVGPOST=0.992;BRSQ=0.869;LDAF=0.9552;AVGPOST=0.9693;RSQ=0.7238;ERATE=0.0055;THETA=0.0003;AC=2106;AN=2184 GT:DS:GL:BD 0.96428573 1 1 121258903 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.980;LDAF=0.0545;AVGPOST=0.9982;RSQ=0.9885;ERATE=0.0004;THETA=0.0006;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 121258988 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0018;AVGPOST=0.9988;RSQ=0.6996;ERATE=0.0004;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121259050 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0014;AVGPOST=0.9993;RSQ=0.7986;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121259367 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.793;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7415;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121259368 . G GA 118 PASS INDEL;BAVGPOST=0.993;BRSQ=0.580;LDAF=0.0162;AVGPOST=0.9801;RSQ=0.4887;ERATE=0.0057;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 121259394 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121259421 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0118;AVGPOST=0.9982;RSQ=0.9346;ERATE=0.0003;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 121259513 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9676;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 121259561 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0029;AVGPOST=0.9979;RSQ=0.7172;ERATE=0.0007;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121259566 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.692;LDAF=0.0063;AVGPOST=0.9930;RSQ=0.5535;ERATE=0.0029;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121259615 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0008;AVGPOST=0.9989;RSQ=0.5178;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121259621 . CCTCA C 282 PASS INDEL;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7189;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121259787 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0051;AVGPOST=0.9967;RSQ=0.7634;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121259798 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121260072 . C CCAATCCTT 1140 PASS INDEL;BAVGPOST=0.997;BRSQ=0.808;LDAF=0.0074;AVGPOST=0.9984;RSQ=0.9053;ERATE=0.0005;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 121260145 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0545;AVGPOST=0.9998;RSQ=0.9985;ERATE=0.0003;THETA=0.0006;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 121260265 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.980;LDAF=0.5395;AVGPOST=0.9788;RSQ=0.9710;ERATE=0.0063;THETA=0.0006;AC=1185;AN=2184 GT:DS:GL:BD 0.54258239 1 1 121260328 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.633;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121260405 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121260641 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0545;AVGPOST=0.9994;RSQ=0.9956;ERATE=0.0004;THETA=0.0005;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 121260662 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.5506;AVGPOST=0.9900;RSQ=0.9861;ERATE=0.0013;THETA=0.0009;AC=1204;AN=2184 GT:DS:GL:BD 0.55128205 1 1 121260717 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121260801 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0040;AVGPOST=0.9991;RSQ=0.9047;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 121260892 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.977;LDAF=0.0312;AVGPOST=0.9944;RSQ=0.9314;ERATE=0.0006;THETA=0.0010;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 121261006 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.446;LDAF=0.0045;AVGPOST=0.9963;RSQ=0.6196;ERATE=0.0006;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121261103 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.573;LDAF=0.0019;AVGPOST=0.9973;RSQ=0.4288;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121261402 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.640;LDAF=0.0028;AVGPOST=0.9980;RSQ=0.7165;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121261454 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6178;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121261549 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0030;AVGPOST=0.9984;RSQ=0.7599;ERATE=0.0006;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121261644 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.654;LDAF=0.0059;AVGPOST=0.9933;RSQ=0.5548;ERATE=0.0015;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121261790 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6382;ERATE=0.0009;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121261986 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.587;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5515;ERATE=0.0005;THETA=0.0041;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121261988 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4373;ERATE=0.0007;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121262002 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0025;AVGPOST=0.9982;RSQ=0.6962;ERATE=0.0004;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121262050 . GT G 209 PASS INDEL;BAVGPOST=0.999;BRSQ=0.871;LDAF=0.0037;AVGPOST=0.9976;RSQ=0.7139;ERATE=0.0006;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121262086 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121262126 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4876;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121262179 . CGT C 177 PASS INDEL;BAVGPOST=0.986;BRSQ=0.670;LDAF=0.0274;AVGPOST=0.9718;RSQ=0.5784;ERATE=0.0114;THETA=0.0003;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 121262186 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.6102;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121262264 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4788;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121262396 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0551;AVGPOST=0.9979;RSQ=0.9840;ERATE=0.0007;THETA=0.0007;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 121262528 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.702;LDAF=0.0036;AVGPOST=0.9985;RSQ=0.8071;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121262609 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.6046;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121262781 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.634;LDAF=0.0157;AVGPOST=0.9851;RSQ=0.6226;ERATE=0.0027;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 121262789 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.749;LDAF=0.0050;AVGPOST=0.9970;RSQ=0.7674;ERATE=0.0007;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 121262933 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0741;AVGPOST=0.9943;RSQ=0.9681;ERATE=0.0004;THETA=0.0005;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 121262956 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.684;LDAF=0.0016;AVGPOST=0.9975;RSQ=0.3253;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121263137 . CAG C 53 PASS INDEL;BAVGPOST=1.000;BRSQ=0.723;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5417;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121263191 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0581;AVGPOST=0.9993;RSQ=0.9953;ERATE=0.0003;THETA=0.0006;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 121263265 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.6501;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121263294 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7845;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121263295 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5595;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121263383 . AG A 649 PASS INDEL;BAVGPOST=0.989;BRSQ=0.734;LDAF=0.0253;AVGPOST=0.9856;RSQ=0.7834;ERATE=0.0005;THETA=0.0004;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 121263384 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0542;AVGPOST=0.9989;RSQ=0.9906;ERATE=0.0005;THETA=0.0003;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 121263437 . A AAGATG 321 PASS INDEL;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121263477 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0029;AVGPOST=0.9980;RSQ=0.7062;ERATE=0.0005;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121263529 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121263584 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6344;ERATE=0.0008;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121263657 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0030;AVGPOST=0.9986;RSQ=0.8128;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121263662 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0029;AVGPOST=0.9952;RSQ=0.4562;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121263789 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.819;LDAF=0.0043;AVGPOST=0.9964;RSQ=0.6554;ERATE=0.0007;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121263868 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7096;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121264079 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3353;AVGPOST=0.9932;RSQ=0.9895;ERATE=0.0005;THETA=0.0006;AC=733;AN=2184 GT:DS:GL:BD 0.33562270 0 1 121264091 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5376;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121264148 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0024;AVGPOST=0.9973;RSQ=0.5759;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121264205 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8453;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121264235 . ATGACATGC A 1238 PASS INDEL;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0065;AVGPOST=0.9969;RSQ=0.8199;ERATE=0.0005;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 121264249 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5165;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121264279 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6492;ERATE=0.0003;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121264352 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0546;AVGPOST=0.9994;RSQ=0.9949;ERATE=0.0003;THETA=0.0004;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 121264379 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0050;AVGPOST=0.9992;RSQ=0.9240;ERATE=0.0005;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121264398 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4990;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121264405 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4950;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121264472 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9141;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121264568 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9137;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121264596 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7519;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121264692 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.531;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121264727 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5248;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121264960 rs113305691 C CTTTA 11490 PASS INDEL;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0554;AVGPOST=0.9973;RSQ=0.9806;ERATE=0.0005;THETA=0.0012;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 121264975 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.1041;ERATE=0.0004;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 121264988 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0046;AVGPOST=0.9994;RSQ=0.9436;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121265132 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0042;AVGPOST=0.9953;RSQ=0.5527;ERATE=0.0011;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121265187 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121265348 . CA C 70 PASS INDEL;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0028;AVGPOST=0.9986;RSQ=0.8143;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121265536 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5970;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121265634 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0028;AVGPOST=0.9980;RSQ=0.7066;ERATE=0.0005;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121265669 . G GT 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0020;AVGPOST=0.9973;RSQ=0.4385;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121265782 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5959;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121265948 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.716;LDAF=0.0052;AVGPOST=0.9977;RSQ=0.8064;ERATE=0.0007;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 121266024 . GTA G 36 PASS INDEL;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5707;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121266060 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.622;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5420;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121266118 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7548;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121266185 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.9759;AVGPOST=0.9958;RSQ=0.9276;ERATE=0.0005;THETA=0.0003;AC=2135;AN=2184 GT:DS:GL:BD 0.97756410 1 1 121266224 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9594;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121266355 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8233;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121266400 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7860;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121266488 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7518;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121266737 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5492;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121266746 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121266772 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121266789 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7167;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121267173 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.823;LDAF=0.0102;AVGPOST=0.9963;RSQ=0.8703;ERATE=0.0004;THETA=0.0016;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 121267192 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6730;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121267220 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7494;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121267412 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.7042;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121267459 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5646;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121267460 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0027;AVGPOST=0.9975;RSQ=0.6305;ERATE=0.0006;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121267470 . CA C 439 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9706;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121267671 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0543;AVGPOST=0.9995;RSQ=0.9956;ERATE=0.0003;THETA=0.0006;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 121267698 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.9813;AVGPOST=0.9965;RSQ=0.9402;ERATE=0.0004;THETA=0.0008;AC=2143;AN=2184 GT:DS:GL:BD 0.98122710 1 1 121267878 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121267943 . TTAAGAA T 471 PASS INDEL;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0037;AVGPOST=0.9994;RSQ=0.9216;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121268064 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0045;AVGPOST=0.9996;RSQ=0.9660;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121268224 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.917;LDAF=0.0073;AVGPOST=0.9989;RSQ=0.9337;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 121268346 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5703;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121268377 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0027;AVGPOST=0.9983;RSQ=0.7272;ERATE=0.0006;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121268555 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0743;AVGPOST=0.9940;RSQ=0.9696;ERATE=0.0004;THETA=0.0003;AC=161;AN=2184 GT:DS:GL:BD 0.07371795 0 1 121268653 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.986;LDAF=0.2175;AVGPOST=0.9894;RSQ=0.9809;ERATE=0.0007;THETA=0.0009;AC=479;AN=2184 GT:DS:GL:BD 0.21932234 0 1 121268730 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8195;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121268817 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.922;LDAF=0.0765;AVGPOST=0.9757;RSQ=0.8749;ERATE=0.0088;THETA=0.0010;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 121268847 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0028;AVGPOST=0.9957;RSQ=0.4281;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121268848 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.742;LDAF=0.0020;AVGPOST=0.9977;RSQ=0.4928;ERATE=0.0009;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121269005 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0055;AVGPOST=0.9977;RSQ=0.8294;ERATE=0.0006;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 121269132 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.703;LDAF=0.0050;AVGPOST=0.9967;RSQ=0.7369;ERATE=0.0005;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 121269202 . ATATATATATT A 16680 PASS INDEL;BAVGPOST=0.697;BRSQ=0.395;LDAF=0.5949;AVGPOST=0.6995;RSQ=0.4236;ERATE=0.0661;THETA=0.0005;AC=1364;AN=2184 GT:DS:GL:BD 0.62454212 1 1 121269204 . ATATATATT A 20393 PASS INDEL;BAVGPOST=0.813;BRSQ=0.441;LDAF=0.7727;AVGPOST=0.8021;RSQ=0.5411;ERATE=0.0208;THETA=0.0007;AC=1776;AN=2184 GT:DS:GL:BD 0.81318682 1 1 121269371 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4467;ERATE=0.0006;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121269403 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.734;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7188;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121269482 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0030;AVGPOST=0.9980;RSQ=0.6997;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121269483 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0018;AVGPOST=0.9975;RSQ=0.4246;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121269493 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.714;LDAF=0.0020;AVGPOST=0.9989;RSQ=0.7732;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121269528 . C CT 2773 PASS INDEL;BAVGPOST=0.752;BRSQ=0.331;LDAF=0.3036;AVGPOST=0.7055;RSQ=0.3819;ERATE=0.0672;THETA=0.0005;AC=405;AN=2184 GT:DS:GL:BD 0.18543956 0 1 121269540 rs113872377 TC T 19020 PASS INDEL;BAVGPOST=0.896;BRSQ=0.680;LDAF=0.7848;AVGPOST=0.8305;RSQ=0.6317;ERATE=0.0197;THETA=0.0010;AC=1827;AN=2184 GT:DS:GL:BD 0.83653843 1 1 121269541 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.924;BRSQ=0.757;LDAF=0.8193;AVGPOST=0.8915;RSQ=0.7393;ERATE=0.0209;THETA=0.0004;AC=1864;AN=2184 GT:DS:GL:BD 0.85347986 1 1 121269634 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6404;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121269711 . CTTAGTAA C 407 PASS INDEL;BAVGPOST=0.998;BRSQ=0.823;LDAF=0.0051;AVGPOST=0.9975;RSQ=0.8050;ERATE=0.0005;THETA=0.0012;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 121269902 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5018;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121269948 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0545;AVGPOST=0.9992;RSQ=0.9937;ERATE=0.0004;THETA=0.0016;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 121269956 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4699;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121269966 . CA C 28 PASS INDEL;BAVGPOST=1.000;BRSQ=0.733;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6041;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121270843 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4782;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121271016 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6069;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121271017 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7530;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121271133 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.844;LDAF=0.0047;AVGPOST=0.9976;RSQ=0.7949;ERATE=0.0004;THETA=0.0012;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121271219 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.773;LDAF=0.0026;AVGPOST=0.9986;RSQ=0.8079;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121271221 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8928;ERATE=0.0004;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121271246 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.7017;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121271572 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6343;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121271598 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7820;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121271621 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.940;LDAF=0.0235;AVGPOST=0.9982;RSQ=0.9664;ERATE=0.0004;THETA=0.0009;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 121271703 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0038;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121271710 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0543;AVGPOST=0.9985;RSQ=0.9915;ERATE=0.0004;THETA=0.0006;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 121271724 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121271733 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9113;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121271742 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8116;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121271743 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6213;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121271838 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6392;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121271857 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.675;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4555;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121271980 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5113;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121271993 . AC A 276 PASS INDEL;BAVGPOST=0.999;BRSQ=0.789;LDAF=0.0042;AVGPOST=0.9972;RSQ=0.6981;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121271995 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.813;LDAF=0.0144;AVGPOST=0.9928;RSQ=0.7936;ERATE=0.0012;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 121272034 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.823;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8187;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121272222 . T TTG 1701 PASS INDEL;BAVGPOST=0.972;BRSQ=0.776;LDAF=0.0678;AVGPOST=0.9576;RSQ=0.7635;ERATE=0.0049;THETA=0.0004;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 121272241 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.781;LDAF=0.0653;AVGPOST=0.9472;RSQ=0.6682;ERATE=0.0073;THETA=0.0005;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 121272371 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6603;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121272544 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.935;LDAF=0.6055;AVGPOST=0.9702;RSQ=0.9527;ERATE=0.0019;THETA=0.0007;AC=1337;AN=2184 GT:DS:GL:BD 0.61217946 1 1 121272594 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.969;LDAF=0.0571;AVGPOST=0.9955;RSQ=0.9674;ERATE=0.0008;THETA=0.0003;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 121272675 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.812;LDAF=0.0410;AVGPOST=0.9818;RSQ=0.8224;ERATE=0.0009;THETA=0.0008;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 121272784 . CA C 77 PASS INDEL;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0019;AVGPOST=0.9972;RSQ=0.3358;ERATE=0.0007;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121272807 . CT C 93 PASS INDEL;BAVGPOST=1.000;BRSQ=0.655;LDAF=0.0029;AVGPOST=0.9952;RSQ=0.3892;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121272820 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.756;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.8021;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121272862 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121272883 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9583;ERATE=0.0003;THETA=0.0011;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 121272890 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5844;ERATE=0.0005;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121273203 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121273212 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.946;LDAF=0.0136;AVGPOST=0.9983;RSQ=0.9561;ERATE=0.0004;THETA=0.0007;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 121273288 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.386;LDAF=0.0047;AVGPOST=0.9932;RSQ=0.4138;ERATE=0.0021;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121273324 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.972;LDAF=0.0550;AVGPOST=0.9978;RSQ=0.9843;ERATE=0.0006;THETA=0.0009;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 121273326 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.700;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5140;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121273510 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.958;BRSQ=0.932;LDAF=0.5910;AVGPOST=0.9642;RSQ=0.9464;ERATE=0.0023;THETA=0.0010;AC=1307;AN=2184 GT:DS:GL:BD 0.59844321 1 1 121273518 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.894;LDAF=0.0501;AVGPOST=0.9936;RSQ=0.9554;ERATE=0.0006;THETA=0.0005;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 121273625 rs112026758 CAAAT C 6718 PASS INDEL;BAVGPOST=0.994;BRSQ=0.952;LDAF=0.0542;AVGPOST=0.9989;RSQ=0.9913;ERATE=0.0004;THETA=0.0008;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 121273641 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.682;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.9019;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121273648 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6213;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121273674 rs35006254 G GT 22804 PASS INDEL;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2858;AVGPOST=0.9932;RSQ=0.9861;ERATE=0.0007;THETA=0.0009;AC=621;AN=2184 GT:DS:GL:BD 0.28434065 0 1 121273743 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.709;LDAF=0.0039;AVGPOST=0.9941;RSQ=0.4338;ERATE=0.0008;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121273944 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.897;LDAF=0.0738;AVGPOST=0.9732;RSQ=0.8590;ERATE=0.0052;THETA=0.0008;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 121279986 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.850;LDAF=0.0169;AVGPOST=0.9917;RSQ=0.8032;ERATE=0.0005;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 121280010 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0143;AVGPOST=0.9988;RSQ=0.9718;ERATE=0.0003;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 121280011 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0531;AVGPOST=0.9989;RSQ=0.9933;ERATE=0.0004;THETA=0.0005;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 121280012 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0052;AVGPOST=0.9980;RSQ=0.8332;ERATE=0.0005;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121280043 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9311;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121280059 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121280086 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0193;AVGPOST=0.9999;RSQ=0.9969;ERATE=0.0003;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 121280118 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0264;AVGPOST=0.9990;RSQ=0.9845;ERATE=0.0003;THETA=0.0007;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 121280130 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0071;AVGPOST=0.9992;RSQ=0.9597;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 121280188 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0059;AVGPOST=0.9999;RSQ=0.9926;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 121280192 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0549;AVGPOST=0.9993;RSQ=0.9960;ERATE=0.0003;THETA=0.0007;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 121280215 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9550;ERATE=0.0010;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121280256 . CT C 183 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8860;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121280485 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0079;AVGPOST=0.9985;RSQ=0.9256;ERATE=0.0004;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 121280602 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8976;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121280613 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.975;LDAF=0.2187;AVGPOST=0.9882;RSQ=0.9755;ERATE=0.0013;THETA=0.0005;AC=479;AN=2184 GT:DS:GL:BD 0.21932234 0 1 121280673 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121280680 . CT C 39 PASS INDEL;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5326;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121280684 . GTC G 60 PASS INDEL;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5247;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121280685 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7986;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121280695 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5493;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121280696 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.670;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121280714 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4555;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121280741 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9505;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121280753 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0551;AVGPOST=0.9996;RSQ=0.9971;ERATE=0.0003;THETA=0.0005;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 121280764 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0538;AVGPOST=0.9994;RSQ=0.9948;ERATE=0.0004;THETA=0.0008;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 121280828 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6525;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121280836 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8541;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121280857 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.832;LDAF=0.0072;AVGPOST=0.9973;RSQ=0.8332;ERATE=0.0004;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 121280953 . TG T 194 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0034;AVGPOST=0.9979;RSQ=0.7243;ERATE=0.0006;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121280975 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0394;AVGPOST=0.9984;RSQ=0.9840;ERATE=0.0004;THETA=0.0007;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 121281131 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5948;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121281179 . G GC 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.5804;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121281191 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.7878;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121281225 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121281226 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121281306 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121281342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5852;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121281371 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121281401 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121281475 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.659;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4209;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121281487 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.975;LDAF=0.0415;AVGPOST=0.9966;RSQ=0.9639;ERATE=0.0004;THETA=0.0004;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 121281576 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8864;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121281648 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6611;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121281762 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.772;LDAF=0.0025;AVGPOST=0.9970;RSQ=0.5258;ERATE=0.0006;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121281860 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.606;LDAF=0.0019;AVGPOST=0.9972;RSQ=0.3586;ERATE=0.0008;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121281998 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0068;AVGPOST=0.9973;RSQ=0.8205;ERATE=0.0006;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 121282056 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.712;LDAF=0.0023;AVGPOST=0.9982;RSQ=0.6584;ERATE=0.0010;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121282224 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.710;LDAF=0.0021;AVGPOST=0.9982;RSQ=0.6234;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121282233 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9984;RSQ=0.7821;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121282244 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0540;AVGPOST=0.9980;RSQ=0.9853;ERATE=0.0004;THETA=0.0007;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 121282460 . ATGG A 325 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7633;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121282685 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0061;AVGPOST=0.9979;RSQ=0.8809;ERATE=0.0005;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 121282779 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0086;AVGPOST=0.9980;RSQ=0.8950;ERATE=0.0005;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 121282819 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0003;AVGPOST=0.9993;RSQ=0.1694;ERATE=0.0004;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 121282979 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.537;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4160;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121282980 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0066;AVGPOST=0.9984;RSQ=0.9076;ERATE=0.0005;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 121282981 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0091;AVGPOST=0.9963;RSQ=0.8474;ERATE=0.0005;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 121283336 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121283353 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5189;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121283364 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4778;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121283431 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121283476 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.5471;AVGPOST=0.9943;RSQ=0.9915;ERATE=0.0006;THETA=0.0003;AC=1197;AN=2184 GT:DS:GL:BD 0.54807693 1 1 121283515 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.2214;AVGPOST=0.9943;RSQ=0.9890;ERATE=0.0012;THETA=0.0004;AC=482;AN=2184 GT:DS:GL:BD 0.22069597 0 1 121283575 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.939;LDAF=0.0164;AVGPOST=0.9961;RSQ=0.9095;ERATE=0.0004;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 121283587 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7167;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121283624 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0626;AVGPOST=0.9973;RSQ=0.9834;ERATE=0.0006;THETA=0.0007;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 121283741 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.709;LDAF=0.0021;AVGPOST=0.9989;RSQ=0.7724;ERATE=0.0005;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121283853 . G GC 679 PASS INDEL;BAVGPOST=0.973;BRSQ=0.696;LDAF=0.0656;AVGPOST=0.9442;RSQ=0.6305;ERATE=0.0233;THETA=0.0009;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 121283867 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.665;LDAF=0.0035;AVGPOST=0.9959;RSQ=0.5567;ERATE=0.0003;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121283946 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.709;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4241;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121283980 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8833;ERATE=0.0005;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121284069 . GT G 318 PASS INDEL;BAVGPOST=0.998;BRSQ=0.747;LDAF=0.0059;AVGPOST=0.9964;RSQ=0.7622;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 121284385 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7717;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121284444 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.692;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6493;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121284501 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6211;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121284600 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0061;AVGPOST=0.9996;RSQ=0.9681;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 121284603 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0545;AVGPOST=0.9994;RSQ=0.9957;ERATE=0.0004;THETA=0.0006;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 121284688 . G GT 83 PASS INDEL;BAVGPOST=0.988;BRSQ=0.590;LDAF=0.0254;AVGPOST=0.9722;RSQ=0.5480;ERATE=0.0072;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 121284726 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0025;AVGPOST=0.9982;RSQ=0.7460;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121284732 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121284935 . TTAAAAA T 280 PASS INDEL;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6426;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121284952 . GCA G 47 PASS INDEL;BAVGPOST=0.998;BRSQ=0.830;LDAF=0.0062;AVGPOST=0.9948;RSQ=0.6774;ERATE=0.0023;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 121284976 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6599;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121285094 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.809;LDAF=0.0059;AVGPOST=0.9965;RSQ=0.7670;ERATE=0.0005;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 121285170 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5882;ERATE=0.0004;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121285195 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.704;LDAF=0.0023;AVGPOST=0.9972;RSQ=0.4756;ERATE=0.0007;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121285221 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0024;AVGPOST=0.9972;RSQ=0.5391;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121285358 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0065;AVGPOST=0.9988;RSQ=0.9323;ERATE=0.0005;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 121285367 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0294;AVGPOST=0.9981;RSQ=0.9750;ERATE=0.0004;THETA=0.0013;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 121285378 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4651;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121285444 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0054;AVGPOST=0.9953;RSQ=0.6924;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 121285608 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5869;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121285692 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5514;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121285852 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.688;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6377;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121285910 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.700;LDAF=0.0028;AVGPOST=0.9987;RSQ=0.8038;ERATE=0.0005;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121286085 . G GA 35 PASS INDEL;BAVGPOST=0.998;BRSQ=0.809;LDAF=0.0039;AVGPOST=0.9975;RSQ=0.7539;ERATE=0.0010;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121286169 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6692;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121286203 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2853;AVGPOST=0.9965;RSQ=0.9933;ERATE=0.0006;THETA=0.0005;AC=619;AN=2184 GT:DS:GL:BD 0.28342491 0 1 121286208 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5935;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121286262 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6463;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121286264 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0046;AVGPOST=0.9998;RSQ=0.9815;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121286285 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0033;AVGPOST=0.9980;RSQ=0.7573;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121286420 . GA G 1668 PASS INDEL;BAVGPOST=0.975;BRSQ=0.822;LDAF=0.0701;AVGPOST=0.9875;RSQ=0.9321;ERATE=0.0008;THETA=0.0003;AC=155;AN=2184 GT:DS:GL:BD 0.07097070 0 1 121286423 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.982;LDAF=0.0748;AVGPOST=0.9855;RSQ=0.9271;ERATE=0.0018;THETA=0.0011;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 121286526 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5367;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121286743 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4279;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121286901 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6181;AVGPOST=0.9955;RSQ=0.9930;ERATE=0.0004;THETA=0.0003;AC=1354;AN=2184 GT:DS:GL:BD 0.61996335 1 1 121287229 . CA C 165 PASS INDEL;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121287305 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.8124;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121287597 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.618;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3450;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121287624 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.951;LDAF=0.0182;AVGPOST=0.9947;RSQ=0.8820;ERATE=0.0004;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 121287640 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.663;LDAF=0.0067;AVGPOST=0.9896;RSQ=0.3780;ERATE=0.0009;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121287677 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.942;LDAF=0.0289;AVGPOST=0.9926;RSQ=0.9056;ERATE=0.0007;THETA=0.0006;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 121287994 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.878;LDAF=0.0960;AVGPOST=0.9749;RSQ=0.8842;ERATE=0.0008;THETA=0.0004;AC=212;AN=2184 GT:DS:GL:BD 0.09706960 0 1 121288049 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.901;LDAF=0.0380;AVGPOST=0.9880;RSQ=0.8787;ERATE=0.0005;THETA=0.0004;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 121288228 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7782;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121288244 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9466;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121288251 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.738;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5839;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121288368 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.645;LDAF=0.0017;AVGPOST=0.9973;RSQ=0.3557;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121288590 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9571;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121288725 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0061;AVGPOST=0.9983;RSQ=0.8855;ERATE=0.0005;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 121288787 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0025;AVGPOST=0.9994;RSQ=0.8999;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121288913 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2944;AVGPOST=0.9948;RSQ=0.9915;ERATE=0.0005;THETA=0.0005;AC=644;AN=2184 GT:DS:GL:BD 0.29487181 0 1 121289002 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0642;AVGPOST=0.9991;RSQ=0.9940;ERATE=0.0004;THETA=0.0024;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 121289022 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5946;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121289118 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.2836;AVGPOST=0.9973;RSQ=0.9943;ERATE=0.0007;THETA=0.0028;AC=617;AN=2184 GT:DS:GL:BD 0.28250915 0 1 121289152 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.9779;AVGPOST=0.9983;RSQ=0.9684;ERATE=0.0004;THETA=0.0041;AC=2136;AN=2184 GT:DS:GL:BD 0.97802198 1 1 121289186 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6819;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121289305 . CT C 465 PASS INDEL;BAVGPOST=0.988;BRSQ=0.833;LDAF=0.0309;AVGPOST=0.9829;RSQ=0.7826;ERATE=0.0075;THETA=0.0003;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 121289327 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9341;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121289339 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121289366 . GT G 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121289393 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0042;AVGPOST=0.9983;RSQ=0.8389;ERATE=0.0006;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121289398 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5341;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121289430 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121289475 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5157;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121289475 . C CCA 23 PASS INDEL;BAVGPOST=0.998;BRSQ=0.574;LDAF=0.0024;AVGPOST=0.9973;RSQ=0.5957;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121289551 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121289576 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121289810 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0392;AVGPOST=0.9984;RSQ=0.9847;ERATE=0.0003;THETA=0.0008;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 121289870 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121289873 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0467;AVGPOST=0.9997;RSQ=0.9969;ERATE=0.0003;THETA=0.0004;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 121290009 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6021;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121290087 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.747;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6135;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121290234 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.6080;AVGPOST=0.9957;RSQ=0.9935;ERATE=0.0004;THETA=0.0005;AC=1332;AN=2184 GT:DS:GL:BD 0.60989010 1 1 121290250 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7699;ERATE=0.0003;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121290334 . T TAA 22 PASS INDEL;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6694;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121290566 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121290646 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0032;AVGPOST=0.9992;RSQ=0.8935;ERATE=0.0004;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121290784 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0025;AVGPOST=0.9989;RSQ=0.8124;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121290834 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121290937 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.683;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8132;ERATE=0.0004;THETA=0.0034;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121291080 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.5445;AVGPOST=0.9884;RSQ=0.9844;ERATE=0.0025;THETA=0.0013;AC=1195;AN=2184 GT:DS:GL:BD 0.54716116 1 1 121291096 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121291285 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7436;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121291360 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9993;RSQ=0.8710;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121291393 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0050;AVGPOST=0.9992;RSQ=0.9323;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121291399 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.945;LDAF=0.0119;AVGPOST=0.9990;RSQ=0.9629;ERATE=0.0004;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 121291615 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.787;LDAF=0.0027;AVGPOST=0.9981;RSQ=0.6878;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121291648 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.548;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7111;ERATE=0.0004;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121291829 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.955;LDAF=0.0599;AVGPOST=0.9933;RSQ=0.9584;ERATE=0.0009;THETA=0.0006;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 121292137 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6846;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121292141 . TTAA T 297 PASS INDEL;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0025;AVGPOST=0.9990;RSQ=0.8230;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121292160 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0048;AVGPOST=0.9996;RSQ=0.9636;ERATE=0.0004;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121292292 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9989;RSQ=0.8682;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121292328 . T TC 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0060;AVGPOST=0.9955;RSQ=0.7107;ERATE=0.0005;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 121292555 rs34136472 CA C 47182 PASS INDEL;BAVGPOST=0.985;BRSQ=0.977;LDAF=0.5259;AVGPOST=0.9742;RSQ=0.9634;ERATE=0.0079;THETA=0.0006;AC=1159;AN=2184 GT:DS:GL:BD 0.53067768 1 1 121292569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6620;ERATE=0.0004;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121292774 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6606;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121292776 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9047;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121292973 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6689;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121293000 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7794;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121293111 . A AT 8610 PASS INDEL;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.0533;AVGPOST=0.9979;RSQ=0.9844;ERATE=0.0005;THETA=0.0004;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 121293274 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.5869;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121293304 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0182;AVGPOST=0.9988;RSQ=0.9732;ERATE=0.0003;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 121293305 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.8856;AVGPOST=0.9947;RSQ=0.9820;ERATE=0.0005;THETA=0.0005;AC=1936;AN=2184 GT:DS:GL:BD 0.88644689 1 1 121293318 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8448;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121293327 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0022;AVGPOST=0.9995;RSQ=0.9135;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121293437 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.985;LDAF=0.5402;AVGPOST=0.9885;RSQ=0.9839;ERATE=0.0010;THETA=0.0020;AC=1182;AN=2184 GT:DS:GL:BD 0.54120880 1 1 121293472 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.795;LDAF=0.0111;AVGPOST=0.9924;RSQ=0.7244;ERATE=0.0006;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 121293536 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.648;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.5264;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121293571 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7258;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121293592 rs3039708 C CCT 399 PASS INDEL;BAVGPOST=0.998;BRSQ=0.894;LDAF=0.0139;AVGPOST=0.9936;RSQ=0.8053;ERATE=0.0069;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 121293663 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.692;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4562;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121293805 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121294050 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.702;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6569;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121294089 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9992;RSQ=0.9597;ERATE=0.0003;THETA=0.0026;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 121294133 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8113;ERATE=0.0006;THETA=0.0039;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121294134 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.949;LDAF=0.0155;AVGPOST=0.9945;RSQ=0.8595;ERATE=0.0005;THETA=0.0010;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 121294294 . A AG 57143 PASS INDEL;BAVGPOST=0.989;BRSQ=0.960;LDAF=0.8875;AVGPOST=0.9880;RSQ=0.9600;ERATE=0.0005;THETA=0.0009;AC=1943;AN=2184 GT:DS:GL:BD 0.88965201 1 1 121294295 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.922;LDAF=0.8490;AVGPOST=0.9625;RSQ=0.8977;ERATE=0.0093;THETA=0.0008;AC=1865;AN=2184 GT:DS:GL:BD 0.85393775 1 1 121294296 . AG A 32449 PASS INDEL;BAVGPOST=0.982;BRSQ=0.932;LDAF=0.8656;AVGPOST=0.9601;RSQ=0.8855;ERATE=0.0065;THETA=0.0006;AC=1912;AN=2184 GT:DS:GL:BD 0.87545788 1 1 121294361 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121294439 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0057;AVGPOST=0.9986;RSQ=0.8851;ERATE=0.0005;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 121294472 . ATC A 10 PASS INDEL;BAVGPOST=0.998;BRSQ=0.682;LDAF=0.0029;AVGPOST=0.9963;RSQ=0.4787;ERATE=0.0017;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121294508 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0031;AVGPOST=0.9986;RSQ=0.8160;ERATE=0.0005;THETA=0.0014;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121294563 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6671;ERATE=0.0005;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121294638 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0004;AVGPOST=0.9993;RSQ=0.3550;ERATE=0.0004;THETA=0.0013;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 121294715 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6607;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121294792 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.871;LDAF=0.0084;AVGPOST=0.9965;RSQ=0.8235;ERATE=0.0004;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 121294862 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6398;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121294919 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.431;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5039;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121294920 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7014;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121295008 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0301;AVGPOST=0.9965;RSQ=0.9558;ERATE=0.0004;THETA=0.0007;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 121295045 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0067;AVGPOST=0.9958;RSQ=0.7574;ERATE=0.0007;THETA=0.0011;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121295107 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.609;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5470;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121295137 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5376;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121295215 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.720;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121295522 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6116;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121295607 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4293;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121295631 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.649;LDAF=0.0023;AVGPOST=0.9963;RSQ=0.3856;ERATE=0.0007;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121295681 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.719;LDAF=0.0016;AVGPOST=0.9981;RSQ=0.4940;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121295889 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0017;AVGPOST=0.9972;RSQ=0.2646;ERATE=0.0006;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121295910 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0052;AVGPOST=0.9987;RSQ=0.8824;ERATE=0.0006;THETA=0.0017;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121295911 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0041;AVGPOST=0.9968;RSQ=0.6674;ERATE=0.0010;THETA=0.0027;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121296295 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.932;LDAF=0.0035;AVGPOST=0.9984;RSQ=0.8278;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121296488 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7290;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121296608 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.846;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6636;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121296711 . G GT 167 PASS INDEL;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0092;AVGPOST=0.9963;RSQ=0.8602;ERATE=0.0004;THETA=0.0010;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 121296839 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0089;AVGPOST=0.9976;RSQ=0.8998;ERATE=0.0004;THETA=0.0011;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 121296935 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7582;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121296964 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121297070 . G GA 157 PASS INDEL;BAVGPOST=0.999;BRSQ=0.683;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7445;ERATE=0.0006;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121297173 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9063;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121297248 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121297342 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5646;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121297389 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6229;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121297434 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0047;AVGPOST=0.9992;RSQ=0.9363;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 121297454 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8667;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121297460 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121297519 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0019;AVGPOST=0.9973;RSQ=0.3867;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121297536 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121297792 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6620;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121297798 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.753;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8474;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121297882 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121298017 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0040;AVGPOST=0.9992;RSQ=0.9075;ERATE=0.0004;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121298088 . GT G 76 PASS INDEL;BAVGPOST=0.996;BRSQ=0.634;LDAF=0.0069;AVGPOST=0.9905;RSQ=0.4883;ERATE=0.0020;THETA=0.0011;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 121298096 . TA T 17 PASS INDEL;BAVGPOST=0.993;BRSQ=0.704;LDAF=0.0120;AVGPOST=0.9884;RSQ=0.6372;ERATE=0.0029;THETA=0.0009;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 121298132 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0054;AVGPOST=0.9985;RSQ=0.8856;ERATE=0.0004;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 121298155 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0030;AVGPOST=0.9986;RSQ=0.8186;ERATE=0.0004;THETA=0.0018;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121298156 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121298170 . GA G 307 PASS INDEL;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0034;AVGPOST=0.9986;RSQ=0.8268;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121298301 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9460;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121298306 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121298335 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121298483 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0004;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121298504 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8519;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121298553 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.910;LDAF=0.0059;AVGPOST=0.9975;RSQ=0.8661;ERATE=0.0003;THETA=0.0030;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 121298703 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0072;AVGPOST=0.9997;RSQ=0.9800;ERATE=0.0004;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 121298950 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.863;LDAF=0.0028;AVGPOST=0.9981;RSQ=0.7453;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121298962 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4886;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121299018 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121299085 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.727;LDAF=0.0188;AVGPOST=0.9872;RSQ=0.7486;ERATE=0.0008;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 121299192 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5207;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121299262 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0098;AVGPOST=0.9995;RSQ=0.9752;ERATE=0.0004;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 121299375 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.8183;ERATE=0.0003;THETA=0.0022;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121299465 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.7030;ERATE=0.0003;THETA=0.0019;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121299483 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0022;AVGPOST=0.9980;RSQ=0.6353;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121299507 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.849;LDAF=0.0082;AVGPOST=0.9963;RSQ=0.8353;ERATE=0.0005;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 121299540 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6632;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121299581 . A ATTG 80 PASS INDEL;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0064;AVGPOST=0.9948;RSQ=0.6782;ERATE=0.0030;THETA=0.0011;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121299608 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6228;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121299611 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.677;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.5115;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121300048 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0266;AVGPOST=0.9959;RSQ=0.9364;ERATE=0.0004;THETA=0.0014;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 121300248 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.5926;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121300277 . T TA 104 PASS INDEL;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0025;AVGPOST=0.9989;RSQ=0.7971;ERATE=0.0004;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121300338 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121300379 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5771;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121300446 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5492;ERATE=0.0004;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121300541 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5882;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121300567 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6119;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121300879 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0065;AVGPOST=0.9989;RSQ=0.9168;ERATE=0.0005;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 121300907 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.694;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4556;ERATE=0.0006;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121301014 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.965;LDAF=0.5687;AVGPOST=0.9713;RSQ=0.9558;ERATE=0.0014;THETA=0.0007;AC=1247;AN=2184 GT:DS:GL:BD 0.57097071 1 1 121301147 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.566;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.5871;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121301501 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8644;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121301697 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0076;AVGPOST=0.9994;RSQ=0.9627;ERATE=0.0003;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 121301708 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0032;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121301729 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0145;AVGPOST=0.9975;RSQ=0.9274;ERATE=0.0004;THETA=0.0011;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 121301899 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5490;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121301988 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5612;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121302105 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6174;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121302216 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4552;ERATE=0.0005;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121302291 . CAT C 283 PASS INDEL;BAVGPOST=0.998;BRSQ=0.898;LDAF=0.0146;AVGPOST=0.9906;RSQ=0.7510;ERATE=0.0062;THETA=0.0007;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 121302431 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8807;ERATE=0.0004;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121302656 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0039;AVGPOST=0.9994;RSQ=0.9278;ERATE=0.0005;THETA=0.0013;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121302697 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0058;AVGPOST=0.9990;RSQ=0.9213;ERATE=0.0004;THETA=0.0011;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 121302707 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8620;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121302708 . CG C 118 PASS INDEL;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.6031;ERATE=0.0006;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121302709 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.759;LDAF=0.0027;AVGPOST=0.9978;RSQ=0.6773;ERATE=0.0011;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121302740 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8860;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121302745 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121302783 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0025;AVGPOST=0.9984;RSQ=0.7635;ERATE=0.0005;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121302784 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0005;AVGPOST=0.9993;RSQ=0.4209;ERATE=0.0004;THETA=0.0007;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 121302786 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7655;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121302791 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.696;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121302837 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9524;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121302868 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0087;AVGPOST=0.9991;RSQ=0.9574;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 121302920 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5191;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121302986 . A AT 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.5926;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121302989 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121303064 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6347;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121303095 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121303101 . CACAA C 1115 PASS INDEL;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0057;AVGPOST=0.9993;RSQ=0.9458;ERATE=0.0003;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 121303111 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121303112 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8156;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121303127 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7009;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121303212 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7640;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121303372 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0052;AVGPOST=0.9988;RSQ=0.9159;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121303696 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.643;LDAF=0.0025;AVGPOST=0.9982;RSQ=0.6824;ERATE=0.0005;THETA=0.0017;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121303747 . CAT C 29 PASS INDEL;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4203;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121303755 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6141;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121303758 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0197;AVGPOST=0.9982;RSQ=0.9617;ERATE=0.0004;THETA=0.0007;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 121303783 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4934;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121303851 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5771;ERATE=0.0005;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121303885 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6675;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121304066 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121304161 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8717;ERATE=0.0010;THETA=0.0016;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121304176 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121304269 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.743;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121304385 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121304472 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.846;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7268;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121304513 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4400;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121304535 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0063;AVGPOST=0.9993;RSQ=0.9494;ERATE=0.0004;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 121304588 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7422;ERATE=0.0006;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121304978 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0053;AVGPOST=0.9994;RSQ=0.9438;ERATE=0.0005;THETA=0.0013;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 121305034 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0410;AVGPOST=0.9965;RSQ=0.9627;ERATE=0.0004;THETA=0.0004;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 121305147 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5724;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121305187 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5938;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121305321 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.994;LDAF=0.5064;AVGPOST=0.9894;RSQ=0.9846;ERATE=0.0005;THETA=0.0008;AC=1110;AN=2184 GT:DS:GL:BD 0.50824177 1 1 121305685 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7548;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121305723 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5869;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121305927 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6634;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121305935 . AG A 58 PASS INDEL;BAVGPOST=0.993;BRSQ=0.727;LDAF=0.0088;AVGPOST=0.9909;RSQ=0.6090;ERATE=0.0031;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 121305992 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121306168 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.9184;AVGPOST=0.9973;RSQ=0.9855;ERATE=0.0004;THETA=0.0007;AC=2005;AN=2184 GT:DS:GL:BD 0.91804028 1 1 121306218 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121306223 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0022;AVGPOST=0.9995;RSQ=0.9226;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121306224 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121306457 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7764;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121306567 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0064;AVGPOST=0.9996;RSQ=0.9763;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 121306608 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9865;ERATE=0.0003;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121306636 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=1.0000;RSQ=0.9957;ERATE=0.0003;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 121306744 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0145;AVGPOST=0.9985;RSQ=0.9625;ERATE=0.0004;THETA=0.0011;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 121306948 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.724;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5910;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121306962 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.949;LDAF=0.0217;AVGPOST=0.9930;RSQ=0.8815;ERATE=0.0005;THETA=0.0024;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 121307285 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0039;AVGPOST=0.9962;RSQ=0.6108;ERATE=0.0006;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121307322 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.705;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6037;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121307360 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.712;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.4894;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121307381 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7279;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121307395 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7529;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121307507 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0067;AVGPOST=0.9992;RSQ=0.9524;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 121307551 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.923;LDAF=0.0184;AVGPOST=0.9950;RSQ=0.8919;ERATE=0.0006;THETA=0.0008;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 121307910 rs113298612 C CAGA 779 PASS INDEL;BAVGPOST=0.988;BRSQ=0.657;LDAF=0.0253;AVGPOST=0.9814;RSQ=0.7429;ERATE=0.0029;THETA=0.0004;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 121307948 . T TA 241 PASS INDEL;BAVGPOST=0.995;BRSQ=0.815;LDAF=0.0173;AVGPOST=0.9878;RSQ=0.7246;ERATE=0.0053;THETA=0.0009;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 121308115 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6267;ERATE=0.0006;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121308122 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.728;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5512;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121308152 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.910;LDAF=0.0103;AVGPOST=0.9978;RSQ=0.9130;ERATE=0.0004;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 121308220 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.6070;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121308280 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.984;LDAF=0.0840;AVGPOST=0.9949;RSQ=0.9745;ERATE=0.0004;THETA=0.0006;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 121308422 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.9090;ERATE=0.0004;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121308520 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121308665 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0004;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121308706 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.657;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121308724 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8725;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121308812 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6151;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121308861 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6115;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121308897 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0014;AVGPOST=0.9993;RSQ=0.7822;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121309025 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.892;LDAF=0.0246;AVGPOST=0.9923;RSQ=0.8778;ERATE=0.0003;THETA=0.0009;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 121309114 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=1.0000;RSQ=0.9960;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 121309290 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7439;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121309387 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8653;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121309448 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9808;ERATE=0.0004;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 121309476 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7832;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121309556 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9829;ERATE=0.0004;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 121309564 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0542;AVGPOST=0.9991;RSQ=0.9933;ERATE=0.0004;THETA=0.0020;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 121309691 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.674;LDAF=0.0287;AVGPOST=0.9797;RSQ=0.7289;ERATE=0.0031;THETA=0.0009;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 121309806 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7267;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121309884 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0040;AVGPOST=0.9964;RSQ=0.6594;ERATE=0.0011;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 121310061 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0544;AVGPOST=0.9989;RSQ=0.9929;ERATE=0.0004;THETA=0.0006;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 121310331 . GTTATT G 720 PASS INDEL;BAVGPOST=0.998;BRSQ=0.772;LDAF=0.0038;AVGPOST=0.9976;RSQ=0.7265;ERATE=0.0006;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121310368 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0041;AVGPOST=0.9992;RSQ=0.9278;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121310385 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.951;LDAF=0.0193;AVGPOST=0.9975;RSQ=0.9563;ERATE=0.0007;THETA=0.0006;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 121310655 . TCC T 713 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0049;AVGPOST=0.9994;RSQ=0.9429;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121310848 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5682;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121310942 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121311177 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.791;LDAF=0.0065;AVGPOST=0.9972;RSQ=0.8125;ERATE=0.0005;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 121311268 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5579;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121311347 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0063;AVGPOST=0.9996;RSQ=0.9762;ERATE=0.0003;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 121311401 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5801;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121311427 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0063;AVGPOST=0.9995;RSQ=0.9728;ERATE=0.0003;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 121311643 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.7506;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121311667 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.935;LDAF=0.0174;AVGPOST=0.9962;RSQ=0.9200;ERATE=0.0004;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 121311680 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6211;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121311779 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121311799 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.985;LDAF=0.5530;AVGPOST=0.9862;RSQ=0.9799;ERATE=0.0021;THETA=0.0006;AC=1212;AN=2184 GT:DS:GL:BD 0.55494505 1 1 121311834 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.5597;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121311932 . T TA 5383 PASS INDEL;BAVGPOST=0.863;BRSQ=0.424;LDAF=0.7923;AVGPOST=0.7765;RSQ=0.4126;ERATE=0.0536;THETA=0.0005;AC=1905;AN=2184 GT:DS:GL:BD 0.87225276 1 1 121311936 rs35074347 A AT 54447 PASS INDEL;BAVGPOST=0.988;BRSQ=0.733;LDAF=0.9793;AVGPOST=0.9891;RSQ=0.7997;ERATE=0.0011;THETA=0.0004;AC=2145;AN=2184 GT:DS:GL:BD 0.98214287 1 1 121311963 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6037;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121312165 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0016;AVGPOST=0.9983;RSQ=0.5228;ERATE=0.0007;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121312324 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5077;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121312532 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.756;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9154;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121312550 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7248;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121312686 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.781;LDAF=0.0023;AVGPOST=0.9980;RSQ=0.6198;ERATE=0.0006;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121312687 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5611;AVGPOST=0.9930;RSQ=0.9893;ERATE=0.0006;THETA=0.0009;AC=1229;AN=2184 GT:DS:GL:BD 0.56272894 1 1 121312973 . TTTC T 460 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.8930;ERATE=0.0004;THETA=0.0015;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121312978 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.6039;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121313120 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121313297 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5420;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121313386 . GC G 234 PASS INDEL;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8224;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121313404 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.465;LDAF=0.0019;AVGPOST=0.9970;RSQ=0.3141;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121313533 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4612;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121313557 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0046;AVGPOST=0.9979;RSQ=0.8121;ERATE=0.0004;THETA=0.0020;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 121313669 . TAAAG T 6055 PASS INDEL;BAVGPOST=0.995;BRSQ=0.939;LDAF=0.0403;AVGPOST=0.9964;RSQ=0.9654;ERATE=0.0005;THETA=0.0009;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 121313747 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.6976;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121313749 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0098;AVGPOST=0.9994;RSQ=0.9706;ERATE=0.0004;THETA=0.0008;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 121313791 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6786;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121313807 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0027;AVGPOST=0.9979;RSQ=0.7118;ERATE=0.0013;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121313811 . TACTA T 1542 PASS INDEL;BAVGPOST=0.995;BRSQ=0.867;LDAF=0.0199;AVGPOST=0.9899;RSQ=0.8038;ERATE=0.0010;THETA=0.0029;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 121313870 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7220;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121314067 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4094;ERATE=0.0006;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121314210 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6077;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121314331 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0537;AVGPOST=0.9994;RSQ=0.9955;ERATE=0.0003;THETA=0.0008;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 121314465 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6406;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121314554 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.950;LDAF=0.1372;AVGPOST=0.9872;RSQ=0.9644;ERATE=0.0005;THETA=0.0008;AC=296;AN=2184 GT:DS:GL:BD 0.13553114 0 1 121314776 . CAGA C 392 PASS INDEL;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8757;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121314834 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0544;AVGPOST=0.9979;RSQ=0.9869;ERATE=0.0004;THETA=0.0004;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 121314852 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5572;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121314858 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7702;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121314860 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5521;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121314887 . ATGT A 373 PASS INDEL;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.9010;ERATE=0.0004;THETA=0.0019;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121314910 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6295;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121314951 . T TA 59 PASS INDEL;BAVGPOST=0.997;BRSQ=0.628;LDAF=0.0039;AVGPOST=0.9960;RSQ=0.5939;ERATE=0.0005;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121314958 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5542;ERATE=0.0005;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121315180 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.973;LDAF=0.0383;AVGPOST=0.9979;RSQ=0.9786;ERATE=0.0004;THETA=0.0004;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 121315263 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6542;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121315297 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.920;LDAF=0.0409;AVGPOST=0.9955;RSQ=0.9576;ERATE=0.0006;THETA=0.0008;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 121315301 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.951;LDAF=0.0432;AVGPOST=0.9909;RSQ=0.9195;ERATE=0.0009;THETA=0.0007;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 121315463 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0022;AVGPOST=0.9976;RSQ=0.5253;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121315470 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.816;LDAF=0.0139;AVGPOST=0.9944;RSQ=0.8346;ERATE=0.0007;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 121315832 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0054;AVGPOST=0.9979;RSQ=0.8449;ERATE=0.0004;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121315847 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.848;LDAF=0.0023;AVGPOST=0.9988;RSQ=0.7931;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121315914 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0025;AVGPOST=0.9979;RSQ=0.6604;ERATE=0.0007;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121316099 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7705;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121316142 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.983;LDAF=0.0549;AVGPOST=0.9966;RSQ=0.9768;ERATE=0.0004;THETA=0.0011;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 121316253 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.719;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6787;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121316294 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.595;LDAF=0.0023;AVGPOST=0.9977;RSQ=0.5778;ERATE=0.0008;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121316296 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.6723;ERATE=0.0005;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121316314 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.401;LDAF=0.0177;AVGPOST=0.9799;RSQ=0.5514;ERATE=0.0021;THETA=0.0009;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 121316407 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8156;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121316408 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6594;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121316414 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7107;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121316441 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121316463 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8116;ERATE=0.0004;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121316568 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.595;LDAF=0.0017;AVGPOST=0.9973;RSQ=0.4032;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121316697 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0055;AVGPOST=0.9947;RSQ=0.5971;ERATE=0.0008;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 121316741 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.731;LDAF=0.0130;AVGPOST=0.9918;RSQ=0.7478;ERATE=0.0009;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 121316930 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0023;AVGPOST=0.9986;RSQ=0.7438;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121316963 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0041;AVGPOST=0.9991;RSQ=0.9220;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121317052 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6209;ERATE=0.0004;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121317082 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121317160 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121317165 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121317208 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.5795;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121317255 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0687;AVGPOST=0.9992;RSQ=0.9951;ERATE=0.0006;THETA=0.0008;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 121317416 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.920;LDAF=0.0275;AVGPOST=0.9969;RSQ=0.9481;ERATE=0.0006;THETA=0.0008;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 121317495 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7839;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121317573 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0030;AVGPOST=0.9957;RSQ=0.3864;ERATE=0.0010;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121317585 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.656;LDAF=0.0080;AVGPOST=0.9916;RSQ=0.6062;ERATE=0.0005;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 121317614 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.706;LDAF=0.0022;AVGPOST=0.9981;RSQ=0.6707;ERATE=0.0006;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121317722 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0238;AVGPOST=0.9978;RSQ=0.9652;ERATE=0.0005;THETA=0.0005;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 121317778 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0104;AVGPOST=0.9979;RSQ=0.9218;ERATE=0.0005;THETA=0.0008;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 121317854 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0013;AVGPOST=0.9981;RSQ=0.4662;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121317876 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.666;LDAF=0.0081;AVGPOST=0.9929;RSQ=0.6739;ERATE=0.0006;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 121317905 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.669;LDAF=0.0037;AVGPOST=0.9973;RSQ=0.6613;ERATE=0.0006;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121317944 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0026;AVGPOST=0.9966;RSQ=0.4762;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121317958 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4832;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121318022 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.907;LDAF=0.0720;AVGPOST=0.9803;RSQ=0.9006;ERATE=0.0009;THETA=0.0009;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 121318321 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0065;AVGPOST=0.9984;RSQ=0.8902;ERATE=0.0004;THETA=0.0009;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 121318329 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.3061;AVGPOST=0.9907;RSQ=0.9816;ERATE=0.0009;THETA=0.0006;AC=669;AN=2184 GT:DS:GL:BD 0.30631867 0 1 121318335 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.588;LDAF=0.0032;AVGPOST=0.9949;RSQ=0.3670;ERATE=0.0006;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121318337 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.980;LDAF=0.9128;AVGPOST=0.9910;RSQ=0.9527;ERATE=0.0011;THETA=0.0007;AC=2001;AN=2184 GT:DS:GL:BD 0.91620880 1 1 121318340 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0024;AVGPOST=0.9987;RSQ=0.7720;ERATE=0.0005;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121318380 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0111;AVGPOST=0.9975;RSQ=0.9014;ERATE=0.0006;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 121318410 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6777;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121318580 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.725;LDAF=0.0037;AVGPOST=0.9952;RSQ=0.4243;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121318662 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0267;AVGPOST=0.9992;RSQ=0.9855;ERATE=0.0004;THETA=0.0005;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 121318671 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8864;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121318699 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.625;LDAF=0.0028;AVGPOST=0.9956;RSQ=0.3597;ERATE=0.0008;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121318733 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8493;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121318762 . AT A 291 PASS INDEL;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8325;ERATE=0.0005;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121318776 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121318847 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.820;LDAF=0.0114;AVGPOST=0.9963;RSQ=0.8808;ERATE=0.0004;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 121318929 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0025;AVGPOST=0.9993;RSQ=0.8719;ERATE=0.0004;THETA=0.0024;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121318935 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0041;AVGPOST=0.9989;RSQ=0.8735;ERATE=0.0005;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121318944 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0547;AVGPOST=0.9988;RSQ=0.9904;ERATE=0.0004;THETA=0.0004;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 121319135 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0572;AVGPOST=0.9947;RSQ=0.9637;ERATE=0.0010;THETA=0.0006;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 121319231 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.949;LDAF=0.0847;AVGPOST=0.9876;RSQ=0.9429;ERATE=0.0006;THETA=0.0007;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 121319232 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0047;AVGPOST=0.9996;RSQ=0.9583;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121319235 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.988;LDAF=0.3098;AVGPOST=0.9946;RSQ=0.9891;ERATE=0.0006;THETA=0.0003;AC=674;AN=2184 GT:DS:GL:BD 0.30860806 0 1 121319479 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.778;LDAF=0.0056;AVGPOST=0.9979;RSQ=0.8335;ERATE=0.0006;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121319506 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.727;LDAF=0.0263;AVGPOST=0.9821;RSQ=0.7457;ERATE=0.0005;THETA=0.0006;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 121319547 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.521;LDAF=0.0047;AVGPOST=0.9958;RSQ=0.6565;ERATE=0.0007;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121319606 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121319797 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0045;AVGPOST=0.9972;RSQ=0.7528;ERATE=0.0008;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121319799 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0138;AVGPOST=0.9982;RSQ=0.9447;ERATE=0.0004;THETA=0.0007;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 121319838 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.691;LDAF=0.0025;AVGPOST=0.9985;RSQ=0.7460;ERATE=0.0005;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121319880 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.925;LDAF=0.0033;AVGPOST=0.9983;RSQ=0.8011;ERATE=0.0005;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121319881 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9187;ERATE=0.0004;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121319922 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121319946 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.661;LDAF=0.0044;AVGPOST=0.9968;RSQ=0.7070;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121319965 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5314;ERATE=0.0007;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121319968 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121320009 . A AC 107 PASS INDEL;BAVGPOST=0.991;BRSQ=0.472;LDAF=0.0138;AVGPOST=0.9883;RSQ=0.6712;ERATE=0.0014;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 121320027 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.946;LDAF=0.9759;AVGPOST=0.9956;RSQ=0.9248;ERATE=0.0005;THETA=0.0008;AC=2135;AN=2184 GT:DS:GL:BD 0.97756410 1 1 121320132 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.859;LDAF=0.8961;AVGPOST=0.9745;RSQ=0.8997;ERATE=0.0013;THETA=0.0004;AC=1967;AN=2184 GT:DS:GL:BD 0.90064102 1 1 121320218 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.827;LDAF=0.0037;AVGPOST=0.9972;RSQ=0.6947;ERATE=0.0008;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121320251 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.929;LDAF=0.0079;AVGPOST=0.9993;RSQ=0.9589;ERATE=0.0004;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 121320308 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7393;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121320311 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0023;AVGPOST=0.9994;RSQ=0.8990;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121320312 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.761;LDAF=0.0026;AVGPOST=0.9973;RSQ=0.5432;ERATE=0.0016;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121320325 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6639;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121320338 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4258;ERATE=0.0006;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121320396 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.628;LDAF=0.0014;AVGPOST=0.9979;RSQ=0.3465;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121320516 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.944;LDAF=0.0351;AVGPOST=0.9973;RSQ=0.9708;ERATE=0.0005;THETA=0.0005;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 121320543 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.928;LDAF=0.0408;AVGPOST=0.9962;RSQ=0.9635;ERATE=0.0007;THETA=0.0008;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 121320747 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.832;BRSQ=0.522;LDAF=0.7494;AVGPOST=0.8145;RSQ=0.5690;ERATE=0.0644;THETA=0.0008;AC=1730;AN=2184 GT:DS:GL:BD 0.79212457 1 1 121320852 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.612;LDAF=0.0253;AVGPOST=0.9790;RSQ=0.6688;ERATE=0.0029;THETA=0.0007;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 121320857 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4074;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121320901 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.702;LDAF=0.0141;AVGPOST=0.9863;RSQ=0.6417;ERATE=0.0024;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 121321028 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0026;AVGPOST=0.9989;RSQ=0.8175;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121321067 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.734;LDAF=0.0085;AVGPOST=0.9936;RSQ=0.7177;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 121321346 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7189;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121321375 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.5404;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121321426 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0263;AVGPOST=0.9985;RSQ=0.9721;ERATE=0.0007;THETA=0.0003;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 121321532 . GC G 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7226;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121321805 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121321810 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.962;LDAF=0.5170;AVGPOST=0.9536;RSQ=0.9373;ERATE=0.0134;THETA=0.0008;AC=1144;AN=2184 GT:DS:GL:BD 0.52380955 1 1 121321814 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4082;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121321866 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.935;LDAF=0.0966;AVGPOST=0.9771;RSQ=0.9025;ERATE=0.0006;THETA=0.0004;AC=207;AN=2184 GT:DS:GL:BD 0.09478022 0 1 121321948 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3061;AVGPOST=0.9955;RSQ=0.9917;ERATE=0.0005;THETA=0.0003;AC=668;AN=2184 GT:DS:GL:BD 0.30586082 0 1 121321969 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6188;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121322012 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4841;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121322220 . C CA 325 PASS INDEL;BAVGPOST=0.990;BRSQ=0.599;LDAF=0.0218;AVGPOST=0.9759;RSQ=0.5367;ERATE=0.0055;THETA=0.0007;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 121322229 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.918;LDAF=0.0393;AVGPOST=0.9925;RSQ=0.9252;ERATE=0.0009;THETA=0.0010;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 121322275 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0278;AVGPOST=0.9970;RSQ=0.9529;ERATE=0.0005;THETA=0.0002;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 121322279 . AAT A 166 PASS INDEL;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0047;AVGPOST=0.9973;RSQ=0.7814;ERATE=0.0005;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 121322340 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.747;LDAF=0.0088;AVGPOST=0.9934;RSQ=0.7183;ERATE=0.0005;THETA=0.0012;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 121322377 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.846;LDAF=0.0035;AVGPOST=0.9985;RSQ=0.8059;ERATE=0.0004;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121322444 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0016;AVGPOST=0.9975;RSQ=0.4315;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121322506 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4684;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121322664 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.547;LDAF=0.0028;AVGPOST=0.9960;RSQ=0.4263;ERATE=0.0006;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121322776 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0007;AVGPOST=0.9991;RSQ=0.4216;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121322950 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0055;AVGPOST=0.9982;RSQ=0.8729;ERATE=0.0004;THETA=0.0012;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121322994 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.794;LDAF=0.0053;AVGPOST=0.9973;RSQ=0.7976;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 121322999 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0102;AVGPOST=0.9987;RSQ=0.9565;ERATE=0.0003;THETA=0.0009;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 121323050 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5359;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121323074 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.757;LDAF=0.0009;AVGPOST=0.9988;RSQ=0.4079;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121323090 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0018;AVGPOST=0.9986;RSQ=0.6513;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121323094 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121323116 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121323147 . GGT G 259 PASS INDEL;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6377;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121323189 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3056;AVGPOST=0.9933;RSQ=0.9881;ERATE=0.0008;THETA=0.0005;AC=663;AN=2184 GT:DS:GL:BD 0.30357143 0 1 121323203 . AT A 81 PASS INDEL;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7200;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121323229 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7089;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121323385 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5665;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121323416 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0036;AVGPOST=0.9983;RSQ=0.8274;ERATE=0.0003;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121323450 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0037;AVGPOST=0.9991;RSQ=0.8974;ERATE=0.0004;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121323479 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6361;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121323491 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8843;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121323552 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4787;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121323558 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0031;AVGPOST=0.9981;RSQ=0.7425;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121323719 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5447;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121323746 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.730;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7871;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121323847 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8169;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121323931 . CTGA C 31721 PASS INDEL;BAVGPOST=0.930;BRSQ=0.889;LDAF=0.4713;AVGPOST=0.9426;RSQ=0.9205;ERATE=0.0011;THETA=0.0007;AC=1058;AN=2184 GT:DS:GL:BD 0.48443222 0 1 121323946 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3663;ERATE=0.0006;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121323997 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.903;LDAF=0.0370;AVGPOST=0.9879;RSQ=0.8738;ERATE=0.0005;THETA=0.0007;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 121324066 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.532;LDAF=0.0037;AVGPOST=0.9968;RSQ=0.7047;ERATE=0.0004;THETA=0.0018;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121324189 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.682;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.6030;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121324422 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0537;AVGPOST=0.9993;RSQ=0.9940;ERATE=0.0004;THETA=0.0006;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 121324443 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.520;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5000;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121324466 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.736;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121324497 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0170;AVGPOST=0.9990;RSQ=0.9751;ERATE=0.0004;THETA=0.0007;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 121324542 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0035;AVGPOST=0.9972;RSQ=0.6613;ERATE=0.0009;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121324549 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.683;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6578;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121324585 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.588;LDAF=0.0047;AVGPOST=0.9950;RSQ=0.5984;ERATE=0.0006;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121324644 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4245;ERATE=0.0006;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121324726 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121324841 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.7109;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121324850 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.730;LDAF=0.0023;AVGPOST=0.9986;RSQ=0.7656;ERATE=0.0004;THETA=0.0016;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121324993 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0005;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121325021 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0063;AVGPOST=0.9993;RSQ=0.9442;ERATE=0.0005;THETA=0.0010;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 121325109 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6260;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121325172 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.780;LDAF=0.0033;AVGPOST=0.9967;RSQ=0.6197;ERATE=0.0013;THETA=0.0014;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121325194 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0027;AVGPOST=0.9987;RSQ=0.7882;ERATE=0.0004;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121325205 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0052;AVGPOST=0.9993;RSQ=0.9329;ERATE=0.0004;THETA=0.0014;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 121325261 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0243;AVGPOST=0.9989;RSQ=0.9788;ERATE=0.0004;THETA=0.0010;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 121325307 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121325461 . TA T 129 PASS INDEL;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7605;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121325465 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.9039;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121325523 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.725;LDAF=0.0029;AVGPOST=0.9978;RSQ=0.7210;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121325776 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0019;AVGPOST=0.9993;RSQ=0.8423;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121325788 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.715;LDAF=0.0029;AVGPOST=0.9971;RSQ=0.5937;ERATE=0.0006;THETA=0.0034;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121325876 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.598;LDAF=0.0026;AVGPOST=0.9975;RSQ=0.6149;ERATE=0.0005;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121325987 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.622;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4468;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121326004 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.838;LDAF=0.0066;AVGPOST=0.9976;RSQ=0.8497;ERATE=0.0006;THETA=0.0010;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 121326016 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121326167 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121326215 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.703;LDAF=0.0046;AVGPOST=0.9945;RSQ=0.5603;ERATE=0.0012;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121326249 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.940;LDAF=0.0128;AVGPOST=0.9944;RSQ=0.8607;ERATE=0.0004;THETA=0.0007;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 121326297 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0263;AVGPOST=0.9952;RSQ=0.9214;ERATE=0.0004;THETA=0.0007;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 121326353 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121326381 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121326450 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0549;AVGPOST=0.9995;RSQ=0.9957;ERATE=0.0003;THETA=0.0014;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 121326459 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7563;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121326496 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0550;AVGPOST=0.9986;RSQ=0.9920;ERATE=0.0004;THETA=0.0006;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 121326905 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.630;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.5745;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121326909 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0022;AVGPOST=0.9996;RSQ=0.9318;ERATE=0.0003;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121326926 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0055;AVGPOST=0.9975;RSQ=0.8316;ERATE=0.0004;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121327014 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.660;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4578;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121327300 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.685;LDAF=0.0063;AVGPOST=0.9958;RSQ=0.7402;ERATE=0.0005;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 121327390 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6515;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121327431 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0024;AVGPOST=0.9987;RSQ=0.7651;ERATE=0.0005;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121327446 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7568;ERATE=0.0005;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121327603 . AAT A 47 PASS INDEL;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0074;AVGPOST=0.9934;RSQ=0.6809;ERATE=0.0010;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121327659 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0031;AVGPOST=0.9986;RSQ=0.8093;ERATE=0.0005;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121327665 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121327784 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0030;AVGPOST=0.9980;RSQ=0.7555;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121327904 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121327919 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121327952 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0537;AVGPOST=0.9993;RSQ=0.9945;ERATE=0.0004;THETA=0.0009;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 121327965 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4819;ERATE=0.0007;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121328037 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0042;AVGPOST=0.9984;RSQ=0.8674;ERATE=0.0004;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 121328195 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5134;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121328199 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7368;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121328268 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.852;LDAF=0.0036;AVGPOST=0.9982;RSQ=0.8050;ERATE=0.0004;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121328269 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.771;LDAF=0.0126;AVGPOST=0.9951;RSQ=0.8521;ERATE=0.0004;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 121328296 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.559;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121328335 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0018;AVGPOST=0.9975;RSQ=0.4671;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121328341 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8096;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121328372 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8344;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121328391 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0144;AVGPOST=0.9975;RSQ=0.9300;ERATE=0.0004;THETA=0.0011;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 121328401 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.736;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7335;ERATE=0.0005;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121328456 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.548;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121328469 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.562;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5309;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121328489 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6340;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121328491 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0136;AVGPOST=0.9985;RSQ=0.9488;ERATE=0.0004;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 121328560 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.734;LDAF=0.0018;AVGPOST=0.9970;RSQ=0.4568;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121328601 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.5777;ERATE=0.0006;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121328623 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8147;ERATE=0.0005;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121328624 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0033;AVGPOST=0.9977;RSQ=0.6952;ERATE=0.0004;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121328705 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0271;AVGPOST=0.9958;RSQ=0.9470;ERATE=0.0005;THETA=0.0020;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 121328836 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121328874 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0546;AVGPOST=0.9995;RSQ=0.9962;ERATE=0.0004;THETA=0.0007;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 121328943 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.742;LDAF=0.0096;AVGPOST=0.9933;RSQ=0.7274;ERATE=0.0010;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 121328955 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.808;LDAF=0.0053;AVGPOST=0.9968;RSQ=0.7548;ERATE=0.0008;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121328956 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8500;ERATE=0.0004;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121329016 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.7966;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121329020 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0039;AVGPOST=0.9958;RSQ=0.5882;ERATE=0.0018;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121329095 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0077;AVGPOST=0.9993;RSQ=0.9544;ERATE=0.0004;THETA=0.0013;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 121329161 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0036;AVGPOST=0.9984;RSQ=0.8177;ERATE=0.0007;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121329199 . A AT 20 PASS INDEL;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5866;ERATE=0.0004;THETA=0.0033;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121329203 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4821;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121329269 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.9149;AVGPOST=0.9917;RSQ=0.9631;ERATE=0.0010;THETA=0.0015;AC=2002;AN=2184 GT:DS:GL:BD 0.91666669 1 1 121329419 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0046;AVGPOST=0.9972;RSQ=0.7832;ERATE=0.0004;THETA=0.0016;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121329614 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121329647 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121329721 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0015;AVGPOST=0.9991;RSQ=0.7289;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121329733 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5566;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121329746 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0549;AVGPOST=0.9995;RSQ=0.9964;ERATE=0.0004;THETA=0.0013;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 121329836 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7819;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121329840 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8336;ERATE=0.0004;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121329955 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0091;AVGPOST=0.9985;RSQ=0.9288;ERATE=0.0004;THETA=0.0011;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 121329995 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5468;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121330155 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.7343;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121330218 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0542;AVGPOST=0.9992;RSQ=0.9945;ERATE=0.0004;THETA=0.0012;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 121330376 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.966;LDAF=0.2217;AVGPOST=0.9858;RSQ=0.9748;ERATE=0.0006;THETA=0.0009;AC=486;AN=2184 GT:DS:GL:BD 0.22252747 0 1 121330378 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.843;LDAF=0.0064;AVGPOST=0.9973;RSQ=0.8328;ERATE=0.0005;THETA=0.0011;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 121330379 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0014;AVGPOST=0.9986;RSQ=0.6724;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121330390 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0544;AVGPOST=0.9992;RSQ=0.9940;ERATE=0.0004;THETA=0.0007;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 121330433 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0042;AVGPOST=0.9985;RSQ=0.8554;ERATE=0.0003;THETA=0.0012;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121330541 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.661;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5341;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121330550 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.5843;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121330629 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121330644 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6586;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121330663 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7841;ERATE=0.0003;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121330717 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.911;LDAF=0.0124;AVGPOST=0.9963;RSQ=0.8786;ERATE=0.0004;THETA=0.0007;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 121330767 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0059;AVGPOST=0.9984;RSQ=0.8813;ERATE=0.0006;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 121330811 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121330863 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9135;ERATE=0.0004;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121330995 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0024;AVGPOST=0.9984;RSQ=0.7265;ERATE=0.0004;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121331034 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.736;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6070;ERATE=0.0004;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121331094 . TAGAC T 120 PASS INDEL;BAVGPOST=0.999;BRSQ=0.675;LDAF=0.0041;AVGPOST=0.9954;RSQ=0.5503;ERATE=0.0008;THETA=0.0012;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121331196 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.884;LDAF=0.0072;AVGPOST=0.9970;RSQ=0.8317;ERATE=0.0004;THETA=0.0018;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 121331249 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7094;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121331318 . TA T 148 PASS INDEL;BAVGPOST=0.999;BRSQ=0.787;LDAF=0.0031;AVGPOST=0.9986;RSQ=0.8197;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121331332 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.821;LDAF=0.0035;AVGPOST=0.9978;RSQ=0.7218;ERATE=0.0005;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121331459 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0056;AVGPOST=0.9997;RSQ=0.9766;ERATE=0.0003;THETA=0.0013;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 121331483 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6043;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121331554 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8483;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121331563 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.720;LDAF=0.0035;AVGPOST=0.9962;RSQ=0.6101;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121331669 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9524;ERATE=0.0003;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121331721 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121331917 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0052;AVGPOST=0.9995;RSQ=0.9591;ERATE=0.0004;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 121331935 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0092;AVGPOST=0.9988;RSQ=0.9388;ERATE=0.0004;THETA=0.0012;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 121331963 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.901;LDAF=0.0032;AVGPOST=0.9982;RSQ=0.7963;ERATE=0.0003;THETA=0.0013;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121332026 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.5740;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121332106 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121332176 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121332188 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6443;ERATE=0.0012;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121332378 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7457;ERATE=0.0005;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121332386 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0066;AVGPOST=0.9987;RSQ=0.9170;ERATE=0.0005;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 121332458 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121332524 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0025;AVGPOST=0.9978;RSQ=0.6650;ERATE=0.0006;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121332661 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121332695 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5624;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121332789 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9550;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121332898 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.718;LDAF=0.0057;AVGPOST=0.9948;RSQ=0.6456;ERATE=0.0016;THETA=0.0023;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121332956 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.9120;AVGPOST=0.9956;RSQ=0.9797;ERATE=0.0005;THETA=0.0004;AC=1994;AN=2184 GT:DS:GL:BD 0.91300368 1 1 121332961 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.908;LDAF=0.0443;AVGPOST=0.9876;RSQ=0.9003;ERATE=0.0004;THETA=0.0008;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 121333055 . CA C 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.756;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5650;ERATE=0.0005;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121333105 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5682;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121333146 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7761;ERATE=0.0005;THETA=0.0032;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121333168 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121333211 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.612;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5045;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121333234 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.938;LDAF=0.0191;AVGPOST=0.9942;RSQ=0.8831;ERATE=0.0004;THETA=0.0019;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 121333238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121333418 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6616;ERATE=0.0004;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121333433 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0052;AVGPOST=0.9992;RSQ=0.9314;ERATE=0.0004;THETA=0.0026;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 121333477 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121333517 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.801;LDAF=0.0085;AVGPOST=0.9974;RSQ=0.8754;ERATE=0.0006;THETA=0.0011;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 121333529 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4112;ERATE=0.0006;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121333609 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.787;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121333621 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.641;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6606;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121333623 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9185;ERATE=0.0004;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121333826 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0555;AVGPOST=0.9976;RSQ=0.9818;ERATE=0.0004;THETA=0.0018;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 121333891 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0009;AVGPOST=0.9987;RSQ=0.4790;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121333942 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0005;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121334067 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5760;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121334077 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.728;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8198;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121334106 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.906;LDAF=0.0165;AVGPOST=0.9941;RSQ=0.8630;ERATE=0.0004;THETA=0.0021;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 121334172 . C CA 43 PASS INDEL;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5341;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121334290 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0038;AVGPOST=0.9988;RSQ=0.8730;ERATE=0.0011;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121334318 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121334324 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0033;AVGPOST=0.9980;RSQ=0.7678;ERATE=0.0004;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121334347 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9434;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121334381 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7641;ERATE=0.0004;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121334402 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6696;ERATE=0.0005;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121334435 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5521;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121334443 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0014;AVGPOST=0.9986;RSQ=0.6247;ERATE=0.0005;THETA=0.0044;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121334480 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0004;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121334567 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0044;AVGPOST=0.9979;RSQ=0.8142;ERATE=0.0004;THETA=0.0015;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121334634 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0046;AVGPOST=0.9980;RSQ=0.8165;ERATE=0.0012;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 121334673 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.716;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4935;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121334793 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.726;LDAF=0.0026;AVGPOST=0.9975;RSQ=0.6150;ERATE=0.0005;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121334816 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4253;ERATE=0.0005;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121334949 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0021;AVGPOST=0.9991;RSQ=0.8096;ERATE=0.0006;THETA=0.0019;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121334962 rs35843280 TAAC T 27053 PASS INDEL;BAVGPOST=0.991;BRSQ=0.984;LDAF=0.2593;AVGPOST=0.9701;RSQ=0.9427;ERATE=0.0033;THETA=0.0022;AC=568;AN=2184 GT:DS:GL:BD 0.26007327 0 1 121335013 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.879;LDAF=0.0085;AVGPOST=0.9970;RSQ=0.8620;ERATE=0.0004;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 121335161 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0023;AVGPOST=0.9994;RSQ=0.8960;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121335201 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0030;AVGPOST=0.9990;RSQ=0.8727;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121335252 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.981;LDAF=0.9102;AVGPOST=0.9886;RSQ=0.9471;ERATE=0.0007;THETA=0.0013;AC=1997;AN=2184 GT:DS:GL:BD 0.91437727 1 1 121335510 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.748;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6392;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121335550 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.727;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6713;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121335560 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0258;AVGPOST=0.9984;RSQ=0.9792;ERATE=0.0004;THETA=0.0013;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 121335572 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8348;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121335600 . AT A 22 PASS INDEL;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0039;AVGPOST=0.9965;RSQ=0.6407;ERATE=0.0005;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121335702 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.846;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8750;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121335780 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5736;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121335845 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.827;LDAF=0.9915;AVGPOST=0.9960;RSQ=0.8120;ERATE=0.0004;THETA=0.0012;AC=2169;AN=2184 GT:DS:GL:BD 0.99313188 1 1 121335885 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8450;ERATE=0.0003;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121336072 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0072;AVGPOST=0.9957;RSQ=0.7983;ERATE=0.0004;THETA=0.0010;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 121336242 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6866;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121336327 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121336386 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8141;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121336481 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6434;ERATE=0.0004;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121336574 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0064;AVGPOST=0.9992;RSQ=0.9405;ERATE=0.0004;THETA=0.0012;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 121336583 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.623;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6649;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121336620 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.662;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.6749;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121336650 . CT C 217 PASS INDEL;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6059;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121336896 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0031;AVGPOST=0.9986;RSQ=0.8281;ERATE=0.0004;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121336924 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9275;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121336930 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6714;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121336943 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0016;AVGPOST=0.9980;RSQ=0.6302;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121336977 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.913;LDAF=0.0162;AVGPOST=0.9968;RSQ=0.9274;ERATE=0.0004;THETA=0.0013;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 121336998 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.835;LDAF=0.0032;AVGPOST=0.9982;RSQ=0.8042;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121337203 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0190;AVGPOST=0.9969;RSQ=0.9376;ERATE=0.0004;THETA=0.0050;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 121337228 . TTC T 175 PASS INDEL;BAVGPOST=0.997;BRSQ=0.791;LDAF=0.0072;AVGPOST=0.9939;RSQ=0.6545;ERATE=0.0016;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 121337280 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7189;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121337383 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.744;LDAF=0.0028;AVGPOST=0.9962;RSQ=0.4273;ERATE=0.0006;THETA=0.0034;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121337440 . A AT 34 PASS INDEL;BAVGPOST=0.998;BRSQ=0.625;LDAF=0.0023;AVGPOST=0.9969;RSQ=0.5055;ERATE=0.0007;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121337519 . A ATC 8893 PASS INDEL;BAVGPOST=0.957;BRSQ=0.889;LDAF=0.2073;AVGPOST=0.9608;RSQ=0.9176;ERATE=0.0007;THETA=0.0008;AC=450;AN=2184 GT:DS:GL:BD 0.20604396 0 1 121337526 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.604;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4701;ERATE=0.0006;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121337532 rs35558924 T TC 8810 PASS INDEL;BAVGPOST=0.957;BRSQ=0.890;LDAF=0.2071;AVGPOST=0.9587;RSQ=0.9131;ERATE=0.0008;THETA=0.0023;AC=449;AN=2184 GT:DS:GL:BD 0.20558608 0 1 121337533 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.954;BRSQ=0.874;LDAF=0.2006;AVGPOST=0.9400;RSQ=0.8636;ERATE=0.0066;THETA=0.0009;AC=430;AN=2184 GT:DS:GL:BD 0.19688645 0 1 121337670 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.9152;AVGPOST=0.9966;RSQ=0.9828;ERATE=0.0004;THETA=0.0010;AC=2001;AN=2184 GT:DS:GL:BD 0.91620880 1 1 121337683 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121337826 . CT C 87 PASS INDEL;BAVGPOST=0.992;BRSQ=0.764;LDAF=0.0152;AVGPOST=0.9885;RSQ=0.7071;ERATE=0.0033;THETA=0.0009;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 121337917 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0027;AVGPOST=0.9987;RSQ=0.8209;ERATE=0.0004;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121338019 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5255;ERATE=0.0005;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121338101 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4652;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121338135 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8280;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121338176 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.916;LDAF=0.0114;AVGPOST=0.9957;RSQ=0.8668;ERATE=0.0007;THETA=0.0011;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 121338207 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0029;AVGPOST=0.9981;RSQ=0.7614;ERATE=0.0005;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121338242 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121338494 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121338539 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0008;AVGPOST=0.9989;RSQ=0.3922;ERATE=0.0004;THETA=0.0047;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121338567 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.907;LDAF=0.0742;AVGPOST=0.9810;RSQ=0.9104;ERATE=0.0006;THETA=0.0008;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 121338597 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121338661 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.709;LDAF=0.0033;AVGPOST=0.9969;RSQ=0.6282;ERATE=0.0006;THETA=0.0024;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121338791 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4487;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121338826 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.551;LDAF=0.0019;AVGPOST=0.9983;RSQ=0.6476;ERATE=0.0004;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121338933 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7076;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121338964 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.989;LDAF=0.2660;AVGPOST=0.9876;RSQ=0.9769;ERATE=0.0009;THETA=0.0009;AC=575;AN=2184 GT:DS:GL:BD 0.26327839 0 1 121338995 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5191;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121339046 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.982;LDAF=0.0561;AVGPOST=0.9958;RSQ=0.9705;ERATE=0.0006;THETA=0.0007;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 121339078 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5168;ERATE=0.0004;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121339111 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0072;AVGPOST=0.9984;RSQ=0.9090;ERATE=0.0004;THETA=0.0021;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 121339126 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0061;AVGPOST=0.9996;RSQ=0.9713;ERATE=0.0004;THETA=0.0039;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 121339173 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6776;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121339179 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.6699;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121339200 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5638;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121339274 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.6624;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121339317 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0036;AVGPOST=0.9989;RSQ=0.8586;ERATE=0.0007;THETA=0.0054;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121339351 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0017;AVGPOST=0.9980;RSQ=0.5677;ERATE=0.0004;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121339450 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121339451 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0047;AVGPOST=0.9995;RSQ=0.9544;ERATE=0.0004;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121339761 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0043;AVGPOST=0.9988;RSQ=0.8724;ERATE=0.0004;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121339844 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.730;LDAF=0.0063;AVGPOST=0.9972;RSQ=0.8216;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 121340024 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.776;LDAF=0.0021;AVGPOST=0.9982;RSQ=0.6654;ERATE=0.0004;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121340043 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0029;AVGPOST=0.9978;RSQ=0.7071;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121340142 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.6689;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121340147 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6703;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121340153 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6952;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121340169 . CTG C 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121340170 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.481;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4193;ERATE=0.0006;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121340262 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8687;ERATE=0.0005;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121340265 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7787;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121340368 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.771;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6529;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121340596 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.470;LDAF=0.0239;AVGPOST=0.9719;RSQ=0.5362;ERATE=0.0090;THETA=0.0009;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 121340797 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121340835 . A AT 162 PASS INDEL;BAVGPOST=0.999;BRSQ=0.644;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.5147;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121341029 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.897;LDAF=0.0621;AVGPOST=0.9854;RSQ=0.9048;ERATE=0.0005;THETA=0.0006;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 121341128 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5650;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121341161 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.927;LDAF=0.0484;AVGPOST=0.9956;RSQ=0.9665;ERATE=0.0004;THETA=0.0012;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 121341245 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0266;AVGPOST=0.9923;RSQ=0.8832;ERATE=0.0009;THETA=0.0004;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 121341472 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6399;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121341473 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.967;LDAF=0.2814;AVGPOST=0.9871;RSQ=0.9732;ERATE=0.0008;THETA=0.0004;AC=617;AN=2184 GT:DS:GL:BD 0.28250915 0 1 121341504 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.687;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.4906;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121341508 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.695;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6639;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121341550 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5517;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121341556 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7403;ERATE=0.0005;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121341567 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.649;LDAF=0.0034;AVGPOST=0.9972;RSQ=0.6483;ERATE=0.0006;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121341731 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.961;LDAF=0.0439;AVGPOST=0.9952;RSQ=0.9612;ERATE=0.0005;THETA=0.0007;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 121341788 . CTG C 56 PASS INDEL;BAVGPOST=0.998;BRSQ=0.373;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4990;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121341956 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0553;AVGPOST=0.9979;RSQ=0.9862;ERATE=0.0004;THETA=0.0010;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 121342039 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0010;AVGPOST=0.9987;RSQ=0.3932;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121342134 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.634;LDAF=0.0112;AVGPOST=0.9894;RSQ=0.6345;ERATE=0.0009;THETA=0.0014;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 121342243 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.695;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0004;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121342251 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121342293 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4756;ERATE=0.0005;THETA=0.0062;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121342353 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121342376 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5703;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121342461 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.671;LDAF=0.0019;AVGPOST=0.9993;RSQ=0.8434;ERATE=0.0003;THETA=0.0017;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121342483 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.682;LDAF=0.0019;AVGPOST=0.9976;RSQ=0.5000;ERATE=0.0005;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121342658 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0548;AVGPOST=0.9993;RSQ=0.9942;ERATE=0.0004;THETA=0.0008;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 121342669 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121342757 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121342791 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0062;AVGPOST=0.9993;RSQ=0.9479;ERATE=0.0005;THETA=0.0011;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 121342800 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4841;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121342826 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.701;LDAF=0.0025;AVGPOST=0.9968;RSQ=0.5114;ERATE=0.0006;THETA=0.0021;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121342884 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.973;LDAF=0.0268;AVGPOST=0.9975;RSQ=0.9614;ERATE=0.0008;THETA=0.0025;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 121342902 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.989;LDAF=0.2640;AVGPOST=0.9862;RSQ=0.9722;ERATE=0.0007;THETA=0.0013;AC=575;AN=2184 GT:DS:GL:BD 0.26327839 0 1 121342927 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6081;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121342940 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.754;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.5946;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121342959 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5799;ERATE=0.0005;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121343066 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9383;ERATE=0.0004;THETA=0.0013;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121343119 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7271;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121343161 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0048;AVGPOST=0.9991;RSQ=0.9151;ERATE=0.0005;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121343251 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.695;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6016;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121343266 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6195;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121343283 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.658;LDAF=0.0035;AVGPOST=0.9961;RSQ=0.5654;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121343403 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5561;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121343711 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0032;AVGPOST=0.9989;RSQ=0.8644;ERATE=0.0004;THETA=0.0012;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121343768 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5466;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121343880 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.9244;ERATE=0.0004;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121343899 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7530;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121343924 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.737;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6622;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121343930 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0126;AVGPOST=0.9986;RSQ=0.9494;ERATE=0.0004;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 121343943 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.5718;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121343991 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.687;LDAF=0.0058;AVGPOST=0.9973;RSQ=0.8316;ERATE=0.0004;THETA=0.0014;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 121344006 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0105;AVGPOST=0.9984;RSQ=0.9362;ERATE=0.0003;THETA=0.0014;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 121344149 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0009;AVGPOST=0.9986;RSQ=0.3643;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121344292 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.644;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.3810;ERATE=0.0006;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121344500 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.986;LDAF=0.2608;AVGPOST=0.9859;RSQ=0.9693;ERATE=0.0005;THETA=0.0014;AC=571;AN=2184 GT:DS:GL:BD 0.26144689 0 1 121344578 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5741;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121344607 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5569;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121344657 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.986;LDAF=0.0547;AVGPOST=0.9988;RSQ=0.9905;ERATE=0.0004;THETA=0.0008;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 121344693 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0059;AVGPOST=0.9954;RSQ=0.6964;ERATE=0.0004;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121344817 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5854;ERATE=0.0004;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121344841 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0025;AVGPOST=0.9985;RSQ=0.8009;ERATE=0.0005;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121344849 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9998;RSQ=0.9822;ERATE=0.0004;THETA=0.0020;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 121344876 . A AT 222 PASS INDEL;BAVGPOST=0.994;BRSQ=0.627;LDAF=0.0082;AVGPOST=0.9899;RSQ=0.5394;ERATE=0.0034;THETA=0.0011;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 121344890 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0040;AVGPOST=0.9984;RSQ=0.8346;ERATE=0.0004;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121344989 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6031;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121345084 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5357;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121345108 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.721;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121345136 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.847;LDAF=0.0057;AVGPOST=0.9978;RSQ=0.8236;ERATE=0.0018;THETA=0.0015;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 121345138 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121345160 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0023;AVGPOST=0.9982;RSQ=0.6635;ERATE=0.0004;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121345216 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.720;LDAF=0.0016;AVGPOST=0.9982;RSQ=0.4689;ERATE=0.0006;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121345296 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.707;LDAF=0.0130;AVGPOST=0.9900;RSQ=0.7262;ERATE=0.0004;THETA=0.0009;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 121345343 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.714;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.3544;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121345346 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.475;LDAF=0.0011;AVGPOST=0.9984;RSQ=0.3381;ERATE=0.0005;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121345374 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0027;AVGPOST=0.9957;RSQ=0.3049;ERATE=0.0008;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121345389 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.511;LDAF=0.0021;AVGPOST=0.9976;RSQ=0.5556;ERATE=0.0005;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121345456 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0111;AVGPOST=0.9980;RSQ=0.9179;ERATE=0.0005;THETA=0.0020;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 121345477 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9047;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121345590 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9981;RSQ=0.8866;ERATE=0.0005;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 121345609 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0041;AVGPOST=0.9979;RSQ=0.7913;ERATE=0.0005;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121345636 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5581;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121345751 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.5330;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121345774 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.3984;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121345797 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121345845 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0051;AVGPOST=0.9996;RSQ=0.9672;ERATE=0.0004;THETA=0.0014;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 121345893 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.830;LDAF=0.0044;AVGPOST=0.9994;RSQ=0.9358;ERATE=0.0003;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 121345899 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5488;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121345936 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5091;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121345952 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121346042 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0675;AVGPOST=0.9982;RSQ=0.9889;ERATE=0.0006;THETA=0.0047;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 121346088 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.948;LDAF=0.0268;AVGPOST=0.9926;RSQ=0.8975;ERATE=0.0005;THETA=0.0019;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 121346142 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.767;LDAF=0.0031;AVGPOST=0.9981;RSQ=0.7939;ERATE=0.0004;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121346270 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.792;LDAF=0.0029;AVGPOST=0.9984;RSQ=0.7470;ERATE=0.0006;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121346271 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0041;AVGPOST=0.9989;RSQ=0.8866;ERATE=0.0005;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121346402 . TTTG T 185 PASS INDEL;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0019;AVGPOST=0.9983;RSQ=0.6203;ERATE=0.0007;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121346407 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.966;LDAF=0.0398;AVGPOST=0.9967;RSQ=0.9703;ERATE=0.0004;THETA=0.0006;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 121346449 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.824;LDAF=0.0033;AVGPOST=0.9969;RSQ=0.6518;ERATE=0.0009;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121346505 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6754;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121346616 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.9164;AVGPOST=0.9941;RSQ=0.9702;ERATE=0.0004;THETA=0.0016;AC=2002;AN=2184 GT:DS:GL:BD 0.91666669 1 1 121346642 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6616;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121346667 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.811;LDAF=0.0037;AVGPOST=0.9984;RSQ=0.8631;ERATE=0.0003;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121346671 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6594;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121346718 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5854;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121346743 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121346750 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6021;ERATE=0.0004;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121346817 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121346827 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9293;ERATE=0.0007;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121346842 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0052;AVGPOST=0.9997;RSQ=0.9708;ERATE=0.0004;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 121346913 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2863;AVGPOST=0.9930;RSQ=0.9864;ERATE=0.0009;THETA=0.0008;AC=621;AN=2184 GT:DS:GL:BD 0.28434065 0 1 121347018 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121347116 . GCTGCACCT G 454 PASS INDEL;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7698;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121347209 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0545;AVGPOST=0.9997;RSQ=0.9975;ERATE=0.0004;THETA=0.0013;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 121347289 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0017;AVGPOST=0.9981;RSQ=0.6241;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121347299 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0124;AVGPOST=0.9987;RSQ=0.9580;ERATE=0.0004;THETA=0.0008;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 121347305 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0556;AVGPOST=0.9991;RSQ=0.9932;ERATE=0.0004;THETA=0.0010;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 121347335 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0103;AVGPOST=0.9973;RSQ=0.9119;ERATE=0.0005;THETA=0.0038;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 121347536 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7804;ERATE=0.0004;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121347553 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0038;AVGPOST=0.9982;RSQ=0.8116;ERATE=0.0005;THETA=0.0025;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121347624 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.772;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6392;ERATE=0.0004;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121347628 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.8125;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121347703 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4583;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121347754 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.986;LDAF=0.1560;AVGPOST=0.9904;RSQ=0.9740;ERATE=0.0007;THETA=0.0009;AC=338;AN=2184 GT:DS:GL:BD 0.15476191 0 1 121347829 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.914;LDAF=0.0201;AVGPOST=0.9944;RSQ=0.8972;ERATE=0.0005;THETA=0.0021;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 121347854 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0029;AVGPOST=0.9985;RSQ=0.7823;ERATE=0.0011;THETA=0.0032;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121347925 . ATG A 63 PASS INDEL;BAVGPOST=0.998;BRSQ=0.781;LDAF=0.0024;AVGPOST=0.9970;RSQ=0.5758;ERATE=0.0005;THETA=0.0020;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121347988 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5493;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121348013 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9339;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121348080 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5709;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121348092 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.659;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5202;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121348131 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.528;LDAF=0.0045;AVGPOST=0.9926;RSQ=0.3716;ERATE=0.0014;THETA=0.0020;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121348166 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5904;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121348169 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.726;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7021;ERATE=0.0004;THETA=0.0026;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121348182 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8292;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121348184 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0679;AVGPOST=0.9960;RSQ=0.9777;ERATE=0.0006;THETA=0.0031;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 121348310 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.894;BRSQ=0.694;LDAF=0.7834;AVGPOST=0.8565;RSQ=0.6604;ERATE=0.0332;THETA=0.0012;AC=1791;AN=2184 GT:DS:GL:BD 0.82005495 1 1 121348329 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.845;LDAF=0.0029;AVGPOST=0.9988;RSQ=0.8178;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121348616 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5062;ERATE=0.0007;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121348926 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.629;LDAF=0.0037;AVGPOST=0.9947;RSQ=0.4154;ERATE=0.0006;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121348944 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0021;AVGPOST=0.9990;RSQ=0.8048;ERATE=0.0006;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121348954 . A AT 40 PASS INDEL;BAVGPOST=0.994;BRSQ=0.472;LDAF=0.0095;AVGPOST=0.9845;RSQ=0.3370;ERATE=0.0035;THETA=0.0026;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121349073 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.860;LDAF=0.0062;AVGPOST=0.9973;RSQ=0.8197;ERATE=0.0004;THETA=0.0014;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 121349097 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.923;LDAF=0.0119;AVGPOST=0.9965;RSQ=0.8880;ERATE=0.0008;THETA=0.0008;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 121349137 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.792;LDAF=0.0037;AVGPOST=0.9971;RSQ=0.6656;ERATE=0.0011;THETA=0.0016;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121349231 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0032;AVGPOST=0.9980;RSQ=0.7180;ERATE=0.0006;THETA=0.0017;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121349251 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0022;AVGPOST=0.9996;RSQ=0.9362;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121349262 . AT A 54 PASS INDEL;BAVGPOST=0.991;BRSQ=0.748;LDAF=0.0106;AVGPOST=0.9902;RSQ=0.6475;ERATE=0.0023;THETA=0.0024;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 121349279 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121349358 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0948;AVGPOST=0.9941;RSQ=0.9728;ERATE=0.0004;THETA=0.0031;AC=205;AN=2184 GT:DS:GL:BD 0.09386447 0 1 121349464 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121349504 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6229;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121349582 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4946;ERATE=0.0004;THETA=0.0039;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121349595 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0028;AVGPOST=0.9979;RSQ=0.6603;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121349596 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0033;AVGPOST=0.9992;RSQ=0.8909;ERATE=0.0004;THETA=0.0033;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121349664 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0070;AVGPOST=0.9988;RSQ=0.9264;ERATE=0.0003;THETA=0.0053;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 121349710 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0022;AVGPOST=0.9995;RSQ=0.9180;ERATE=0.0003;THETA=0.0050;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121349731 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4880;ERATE=0.0004;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121349744 . TA T 878 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9854;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 121349835 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0035;AVGPOST=0.9991;RSQ=0.8873;ERATE=0.0004;THETA=0.0025;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121349843 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121349847 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0045;AVGPOST=0.9987;RSQ=0.8819;ERATE=0.0004;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 121350001 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5281;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121350140 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5183;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121350148 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.654;LDAF=0.0032;AVGPOST=0.9970;RSQ=0.5868;ERATE=0.0010;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121350152 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6602;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121350208 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.629;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5794;ERATE=0.0004;THETA=0.0075;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121350213 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2826;AVGPOST=0.9817;RSQ=0.9659;ERATE=0.0008;THETA=0.0076;AC=612;AN=2184 GT:DS:GL:BD 0.28021979 0 1 121350268 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0090;AVGPOST=0.9980;RSQ=0.8959;ERATE=0.0004;THETA=0.0017;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 121350398 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0019;AVGPOST=0.9985;RSQ=0.6618;ERATE=0.0004;THETA=0.0025;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121350442 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9311;ERATE=0.0003;THETA=0.0130;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121350478 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5316;ERATE=0.0004;THETA=0.0042;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121350553 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6299;ERATE=0.0005;THETA=0.0054;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121350611 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.811;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8902;ERATE=0.0004;THETA=0.0071;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121350615 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.820;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8552;ERATE=0.0004;THETA=0.0142;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121350627 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9718;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121350745 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0554;AVGPOST=0.9983;RSQ=0.9877;ERATE=0.0004;THETA=0.0094;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 121350789 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0003;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121350791 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9365;ERATE=0.0004;THETA=0.0050;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121350916 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0004;THETA=0.0038;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121350934 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9852;ERATE=0.0003;THETA=0.0017;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 121351046 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0564;AVGPOST=0.9963;RSQ=0.9745;ERATE=0.0006;THETA=0.0071;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 121351055 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5938;ERATE=0.0004;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121351132 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0004;THETA=0.0199;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121351170 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7473;ERATE=0.0004;THETA=0.0064;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121351172 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7475;ERATE=0.0003;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121351230 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0004;THETA=0.0325;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121351268 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0004;THETA=0.0099;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121351460 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0155;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121351462 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8168;ERATE=0.0004;THETA=0.0060;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121351467 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0004;THETA=0.0096;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121351481 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9717;ERATE=0.0003;THETA=0.0111;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121351565 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5717;ERATE=0.0003;THETA=0.0195;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121360680 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.800;LDAF=0.0620;AVGPOST=0.9759;RSQ=0.8346;ERATE=0.0032;THETA=0.0079;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 121360908 . CA C 3133 PASS INDEL;BAVGPOST=0.997;BRSQ=0.950;LDAF=0.0277;AVGPOST=0.9968;RSQ=0.9523;ERATE=0.0003;THETA=0.0032;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 121361000 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.578;LDAF=0.0088;AVGPOST=0.9890;RSQ=0.5375;ERATE=0.0022;THETA=0.0069;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 121361032 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.875;LDAF=0.0115;AVGPOST=0.9952;RSQ=0.8367;ERATE=0.0003;THETA=0.0074;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 121361042 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.875;LDAF=0.0115;AVGPOST=0.9952;RSQ=0.8383;ERATE=0.0004;THETA=0.0013;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 121362069 . CA C 7714 PASS INDEL;BAVGPOST=0.991;BRSQ=0.932;LDAF=0.0506;AVGPOST=0.9886;RSQ=0.9185;ERATE=0.0008;THETA=0.0036;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 121362171 rs71582723 GA G 20515 PASS INDEL;BAVGPOST=0.964;BRSQ=0.868;LDAF=0.1888;AVGPOST=0.9612;RSQ=0.8820;ERATE=0.0019;THETA=0.0191;AC=387;AN=2184 GT:DS:GL:BD 0.17719780 0 1 121363130 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.955;BRSQ=0.732;LDAF=0.0877;AVGPOST=0.9500;RSQ=0.7483;ERATE=0.0054;THETA=0.0069;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 121363171 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.851;BRSQ=0.454;LDAF=0.2055;AVGPOST=0.8178;RSQ=0.5111;ERATE=0.0240;THETA=0.0222;AC=294;AN=2184 GT:DS:GL:BD 0.13461539 0 1 121363970 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.680;BRSQ=0.165;LDAF=0.2733;AVGPOST=0.6819;RSQ=0.3562;ERATE=0.0069;THETA=0.0059;AC=352;AN=2184 GT:DS:GL:BD 0.16117217 0 1 121364426 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.685;LDAF=0.0325;AVGPOST=0.9749;RSQ=0.7066;ERATE=0.0040;THETA=0.0111;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 121364707 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0027;AVGPOST=0.9985;RSQ=0.8123;ERATE=0.0004;THETA=0.0170;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121364851 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.954;BRSQ=0.630;LDAF=0.0607;AVGPOST=0.9517;RSQ=0.6792;ERATE=0.0085;THETA=0.0171;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 121365632 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.941;BRSQ=0.791;LDAF=0.1693;AVGPOST=0.9347;RSQ=0.7995;ERATE=0.0024;THETA=0.0200;AC=330;AN=2184 GT:DS:GL:BD 0.15109891 0 1 121365649 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.565;LDAF=0.0409;AVGPOST=0.9611;RSQ=0.5911;ERATE=0.0035;THETA=0.0179;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 121365650 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.887;BRSQ=0.716;LDAF=0.7978;AVGPOST=0.8842;RSQ=0.7636;ERATE=0.0044;THETA=0.0037;AC=1797;AN=2184 GT:DS:GL:BD 0.82280219 1 1 121365659 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.858;BRSQ=0.719;LDAF=0.4223;AVGPOST=0.8580;RSQ=0.7675;ERATE=0.0028;THETA=0.0126;AC=890;AN=2184 GT:DS:GL:BD 0.40750915 0 1 121365679 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.557;LDAF=0.0201;AVGPOST=0.9780;RSQ=0.5490;ERATE=0.0008;THETA=0.0178;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 121365680 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.720;LDAF=0.0011;AVGPOST=0.9979;RSQ=0.0894;ERATE=0.0005;THETA=0.0167;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 121365681 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.956;BRSQ=0.410;LDAF=0.0444;AVGPOST=0.9509;RSQ=0.5480;ERATE=0.0051;THETA=0.0142;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 121365684 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.950;LDAF=0.0322;AVGPOST=0.9892;RSQ=0.8880;ERATE=0.0004;THETA=0.0111;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 121365762 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.951;LDAF=0.0325;AVGPOST=0.9891;RSQ=0.8875;ERATE=0.0006;THETA=0.0085;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 121365773 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.756;BRSQ=0.486;LDAF=0.2962;AVGPOST=0.7929;RSQ=0.5803;ERATE=0.0231;THETA=0.0076;AC=545;AN=2184 GT:DS:GL:BD 0.24954212 0 1 121367081 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.903;BRSQ=0.641;LDAF=0.8537;AVGPOST=0.8904;RSQ=0.6792;ERATE=0.0030;THETA=0.0123;AC=1911;AN=2184 GT:DS:GL:BD 0.87500000 1 1 121367084 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.489;LDAF=0.0473;AVGPOST=0.9433;RSQ=0.4984;ERATE=0.0031;THETA=0.0161;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 121367109 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.947;BRSQ=0.664;LDAF=0.0946;AVGPOST=0.9267;RSQ=0.6664;ERATE=0.0069;THETA=0.0131;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 121367733 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7629;ERATE=0.0005;THETA=0.0089;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121367755 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.927;BRSQ=0.889;LDAF=0.5338;AVGPOST=0.9160;RSQ=0.8947;ERATE=0.0010;THETA=0.0120;AC=1162;AN=2184 GT:DS:GL:BD 0.53205127 1 1 121367756 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.715;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.6784;ERATE=0.0006;THETA=0.0104;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121367757 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.761;LDAF=0.0070;AVGPOST=0.9957;RSQ=0.7762;ERATE=0.0006;THETA=0.0061;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 121367765 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.896;LDAF=0.0117;AVGPOST=0.9972;RSQ=0.9191;ERATE=0.0004;THETA=0.0076;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 121367770 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6628;ERATE=0.0005;THETA=0.0128;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121367786 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.830;LDAF=0.0056;AVGPOST=0.9972;RSQ=0.8420;ERATE=0.0005;THETA=0.0018;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 121367800 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.943;BRSQ=0.788;LDAF=0.1444;AVGPOST=0.9433;RSQ=0.8106;ERATE=0.0113;THETA=0.0073;AC=284;AN=2184 GT:DS:GL:BD 0.13003664 0 1 121367809 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5542;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121367813 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.938;BRSQ=0.653;LDAF=0.1030;AVGPOST=0.9340;RSQ=0.7060;ERATE=0.0124;THETA=0.0217;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 121367815 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.830;LDAF=0.0027;AVGPOST=0.9987;RSQ=0.7833;ERATE=0.0004;THETA=0.0025;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121369024 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.682;LDAF=0.0054;AVGPOST=0.9931;RSQ=0.5048;ERATE=0.0011;THETA=0.0021;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121369406 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.836;LDAF=0.0052;AVGPOST=0.9978;RSQ=0.8334;ERATE=0.0006;THETA=0.0154;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 121369576 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.911;BRSQ=0.564;LDAF=0.1230;AVGPOST=0.9118;RSQ=0.6638;ERATE=0.0205;THETA=0.0233;AC=203;AN=2184 GT:DS:GL:BD 0.09294872 0 1 121369582 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.927;BRSQ=0.557;LDAF=0.9310;AVGPOST=0.9439;RSQ=0.7035;ERATE=0.0014;THETA=0.0062;AC=2057;AN=2184 GT:DS:GL:BD 0.94184983 1 1 121369653 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4967;ERATE=0.0005;THETA=0.0098;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121369759 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8096;ERATE=0.0004;THETA=0.0115;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121370083 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.872;BRSQ=0.673;LDAF=0.2239;AVGPOST=0.8775;RSQ=0.7450;ERATE=0.0120;THETA=0.0079;AC=451;AN=2184 GT:DS:GL:BD 0.20650183 0 1 121370117 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.847;BRSQ=0.706;LDAF=0.6412;AVGPOST=0.8414;RSQ=0.7407;ERATE=0.0152;THETA=0.0086;AC=1444;AN=2184 GT:DS:GL:BD 0.66117215 1 1 121370178 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.768;BRSQ=0.453;LDAF=0.5801;AVGPOST=0.7829;RSQ=0.5344;ERATE=0.0412;THETA=0.0124;AC=1317;AN=2184 GT:DS:GL:BD 0.60302198 1 1 121370339 . AG A 191 PASS INDEL;BAVGPOST=0.962;BRSQ=0.374;LDAF=0.0328;AVGPOST=0.9571;RSQ=0.4502;ERATE=0.0051;THETA=0.0219;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 121370560 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.930;BRSQ=0.658;LDAF=0.0987;AVGPOST=0.9417;RSQ=0.7369;ERATE=0.0037;THETA=0.0126;AC=177;AN=2184 GT:DS:GL:BD 0.08104396 0 1 121370571 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.937;BRSQ=0.669;LDAF=0.1155;AVGPOST=0.9253;RSQ=0.6965;ERATE=0.0097;THETA=0.0120;AC=200;AN=2184 GT:DS:GL:BD 0.09157509 0 1 121370578 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.928;BRSQ=0.783;LDAF=0.8534;AVGPOST=0.9389;RSQ=0.8448;ERATE=0.0011;THETA=0.0054;AC=1887;AN=2184 GT:DS:GL:BD 0.86401099 1 1 121370945 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.564;LDAF=0.0341;AVGPOST=0.9667;RSQ=0.6052;ERATE=0.0019;THETA=0.0161;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 121370957 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.943;BRSQ=0.608;LDAF=0.0729;AVGPOST=0.9461;RSQ=0.6853;ERATE=0.0071;THETA=0.0106;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 121370967 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.872;BRSQ=0.734;LDAF=0.2288;AVGPOST=0.8936;RSQ=0.8142;ERATE=0.0075;THETA=0.0079;AC=458;AN=2184 GT:DS:GL:BD 0.20970696 0 1 121370972 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.944;BRSQ=0.740;LDAF=0.1009;AVGPOST=0.9572;RSQ=0.8334;ERATE=0.0006;THETA=0.0218;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 121371004 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.737;LDAF=0.0067;AVGPOST=0.9955;RSQ=0.8072;ERATE=0.0005;THETA=0.0039;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 121371021 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.599;LDAF=0.0751;AVGPOST=0.9343;RSQ=0.6294;ERATE=0.0075;THETA=0.0112;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 121371026 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.951;BRSQ=0.881;LDAF=0.2341;AVGPOST=0.9541;RSQ=0.9050;ERATE=0.0011;THETA=0.0051;AC=498;AN=2184 GT:DS:GL:BD 0.22802198 0 1 121371037 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5441;ERATE=0.0005;THETA=0.0103;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121371055 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5157;ERATE=0.0004;THETA=0.0061;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121371060 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.934;BRSQ=0.898;LDAF=0.6183;AVGPOST=0.9404;RSQ=0.9198;ERATE=0.0012;THETA=0.0237;AC=1358;AN=2184 GT:DS:GL:BD 0.62179488 1 1 121371083 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.944;BRSQ=0.898;LDAF=0.4295;AVGPOST=0.9534;RSQ=0.9240;ERATE=0.0014;THETA=0.0074;AC=938;AN=2184 GT:DS:GL:BD 0.42948717 0 1 121371119 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.852;LDAF=0.0100;AVGPOST=0.9950;RSQ=0.8303;ERATE=0.0004;THETA=0.0053;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 121371136 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.959;BRSQ=0.933;LDAF=0.2659;AVGPOST=0.9646;RSQ=0.9419;ERATE=0.0010;THETA=0.0050;AC=570;AN=2184 GT:DS:GL:BD 0.26098901 0 1 121371141 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5296;ERATE=0.0005;THETA=0.0067;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121371152 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.653;LDAF=0.0398;AVGPOST=0.9707;RSQ=0.7278;ERATE=0.0033;THETA=0.0197;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 121371173 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.940;BRSQ=0.913;LDAF=0.4858;AVGPOST=0.9493;RSQ=0.9231;ERATE=0.0033;THETA=0.0068;AC=1058;AN=2184 GT:DS:GL:BD 0.48443222 0 1 121371187 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.826;LDAF=0.0178;AVGPOST=0.9918;RSQ=0.8028;ERATE=0.0022;THETA=0.0098;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 121371211 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5439;ERATE=0.0004;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121371213 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.624;LDAF=0.0129;AVGPOST=0.9885;RSQ=0.6509;ERATE=0.0028;THETA=0.0061;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 121371233 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.944;BRSQ=0.883;LDAF=0.4582;AVGPOST=0.9464;RSQ=0.9003;ERATE=0.0092;THETA=0.0216;AC=1008;AN=2184 GT:DS:GL:BD 0.46153846 0 1 121371430 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.881;BRSQ=0.684;LDAF=0.8430;AVGPOST=0.9140;RSQ=0.7770;ERATE=0.0044;THETA=0.0011;AC=1871;AN=2184 GT:DS:GL:BD 0.85668498 1 1 121371448 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.659;LDAF=0.0074;AVGPOST=0.9923;RSQ=0.5639;ERATE=0.0007;THETA=0.0023;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121371669 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.542;LDAF=0.0067;AVGPOST=0.9935;RSQ=0.5708;ERATE=0.0008;THETA=0.0139;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121371975 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.844;BRSQ=0.362;LDAF=0.1661;AVGPOST=0.8150;RSQ=0.4357;ERATE=0.0155;THETA=0.0059;AC=187;AN=2184 GT:DS:GL:BD 0.08562271 0 1 121371978 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.922;BRSQ=0.824;LDAF=0.2420;AVGPOST=0.8938;RSQ=0.7987;ERATE=0.0023;THETA=0.0072;AC=511;AN=2184 GT:DS:GL:BD 0.23397435 0 1 121372102 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.884;BRSQ=0.530;LDAF=0.1670;AVGPOST=0.8753;RSQ=0.6211;ERATE=0.0129;THETA=0.0097;AC=278;AN=2184 GT:DS:GL:BD 0.12728938 0 1 121372127 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.798;LDAF=0.0034;AVGPOST=0.9969;RSQ=0.6010;ERATE=0.0006;THETA=0.0114;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121372476 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.957;BRSQ=0.770;LDAF=0.0982;AVGPOST=0.9465;RSQ=0.7495;ERATE=0.0100;THETA=0.0178;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 121372560 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.735;BRSQ=0.598;LDAF=0.5610;AVGPOST=0.7731;RSQ=0.6990;ERATE=0.0045;THETA=0.0066;AC=1271;AN=2184 GT:DS:GL:BD 0.58195972 1 1 121372570 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.893;BRSQ=0.467;LDAF=0.1439;AVGPOST=0.8521;RSQ=0.4779;ERATE=0.0132;THETA=0.0105;AC=179;AN=2184 GT:DS:GL:BD 0.08195971 0 1 121372746 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.550;LDAF=0.0249;AVGPOST=0.9778;RSQ=0.6351;ERATE=0.0016;THETA=0.0086;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 121372749 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.657;LDAF=0.0189;AVGPOST=0.9870;RSQ=0.7202;ERATE=0.0008;THETA=0.0173;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 121372786 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.462;LDAF=0.0287;AVGPOST=0.9658;RSQ=0.5268;ERATE=0.0068;THETA=0.0027;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 121372788 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.454;LDAF=0.0079;AVGPOST=0.9887;RSQ=0.4241;ERATE=0.0030;THETA=0.0109;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121372795 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0022;AVGPOST=0.9980;RSQ=0.5946;ERATE=0.0005;THETA=0.0070;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121372845 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.912;BRSQ=0.796;LDAF=0.1901;AVGPOST=0.9206;RSQ=0.8325;ERATE=0.0009;THETA=0.0043;AC=381;AN=2184 GT:DS:GL:BD 0.17445055 0 1 121372887 . AACT A 880 PASS INDEL;BAVGPOST=0.915;BRSQ=0.353;LDAF=0.1177;AVGPOST=0.8422;RSQ=0.3864;ERATE=0.0201;THETA=0.0190;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 121373378 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.733;LDAF=0.0063;AVGPOST=0.9959;RSQ=0.7543;ERATE=0.0006;THETA=0.0124;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121373616 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.809;BRSQ=0.431;LDAF=0.2517;AVGPOST=0.8276;RSQ=0.5924;ERATE=0.0018;THETA=0.0014;AC=415;AN=2184 GT:DS:GL:BD 0.19001831 0 1 121373618 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.803;BRSQ=0.432;LDAF=0.2773;AVGPOST=0.8161;RSQ=0.5825;ERATE=0.0039;THETA=0.0048;AC=445;AN=2184 GT:DS:GL:BD 0.20375457 0 1 121373689 . AT A 28 PASS INDEL;BAVGPOST=0.993;BRSQ=0.229;LDAF=0.0116;AVGPOST=0.9795;RSQ=0.2655;ERATE=0.0017;THETA=0.0184;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121373996 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.712;LDAF=0.0170;AVGPOST=0.9898;RSQ=0.7657;ERATE=0.0006;THETA=0.0082;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 121374420 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.675;LDAF=0.0070;AVGPOST=0.9964;RSQ=0.7787;ERATE=0.0007;THETA=0.0031;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 121374429 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4370;ERATE=0.0004;THETA=0.0053;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121374436 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.867;LDAF=0.0054;AVGPOST=0.9975;RSQ=0.7989;ERATE=0.0004;THETA=0.0045;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 121374438 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.957;BRSQ=0.784;LDAF=0.1079;AVGPOST=0.9544;RSQ=0.8060;ERATE=0.0024;THETA=0.0016;AC=207;AN=2184 GT:DS:GL:BD 0.09478022 0 1 121374442 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.955;BRSQ=0.758;LDAF=0.1031;AVGPOST=0.9571;RSQ=0.8119;ERATE=0.0009;THETA=0.0040;AC=205;AN=2184 GT:DS:GL:BD 0.09386447 0 1 121374443 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.519;LDAF=0.0149;AVGPOST=0.9877;RSQ=0.6482;ERATE=0.0005;THETA=0.0038;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 121374454 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0010;AVGPOST=0.9985;RSQ=0.3578;ERATE=0.0004;THETA=0.0061;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121374463 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.568;LDAF=0.0024;AVGPOST=0.9967;RSQ=0.4184;ERATE=0.0006;THETA=0.0071;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121374487 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.886;BRSQ=0.687;LDAF=0.1766;AVGPOST=0.9041;RSQ=0.7908;ERATE=0.0010;THETA=0.0087;AC=354;AN=2184 GT:DS:GL:BD 0.16208792 0 1 121374611 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.602;BRSQ=0.392;LDAF=0.5614;AVGPOST=0.7073;RSQ=0.5695;ERATE=0.0074;THETA=0.0052;AC=1214;AN=2184 GT:DS:GL:BD 0.55586082 1 1 121374612 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.788;BRSQ=0.190;LDAF=0.1852;AVGPOST=0.7579;RSQ=0.3604;ERATE=0.0142;THETA=0.0031;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 121374670 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.340;LDAF=0.0133;AVGPOST=0.9799;RSQ=0.3177;ERATE=0.0014;THETA=0.0103;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121374673 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.676;BRSQ=0.339;LDAF=0.3376;AVGPOST=0.6967;RSQ=0.4772;ERATE=0.0184;THETA=0.0128;AC=638;AN=2184 GT:DS:GL:BD 0.29212454 0 1 121374889 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.938;BRSQ=0.659;LDAF=0.0995;AVGPOST=0.9383;RSQ=0.7340;ERATE=0.0080;THETA=0.0143;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 121374895 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.916;BRSQ=0.843;LDAF=0.4648;AVGPOST=0.9004;RSQ=0.8365;ERATE=0.0060;THETA=0.0121;AC=1000;AN=2184 GT:DS:GL:BD 0.45787546 0 1 121374968 . CG C 9361 PASS INDEL;BAVGPOST=0.603;BRSQ=0.197;LDAF=0.6786;AVGPOST=0.6987;RSQ=0.4588;ERATE=0.0158;THETA=0.0080;AC=1627;AN=2184 GT:DS:GL:BD 0.74496335 1 1 121375433 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.794;BRSQ=0.364;LDAF=0.8098;AVGPOST=0.7958;RSQ=0.5253;ERATE=0.0078;THETA=0.0091;AC=1884;AN=2184 GT:DS:GL:BD 0.86263734 1 1 121375967 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.910;BRSQ=0.777;LDAF=0.2227;AVGPOST=0.9128;RSQ=0.8303;ERATE=0.0036;THETA=0.0191;AC=451;AN=2184 GT:DS:GL:BD 0.20650183 0 1 121375972 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.944;BRSQ=0.846;LDAF=0.1553;AVGPOST=0.9548;RSQ=0.8816;ERATE=0.0006;THETA=0.0019;AC=328;AN=2184 GT:DS:GL:BD 0.15018316 0 1 121375978 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.938;BRSQ=0.843;LDAF=0.1595;AVGPOST=0.9526;RSQ=0.8777;ERATE=0.0010;THETA=0.0034;AC=335;AN=2184 GT:DS:GL:BD 0.15338828 0 1 121375989 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4822;ERATE=0.0005;THETA=0.0053;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121375992 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.707;LDAF=0.0233;AVGPOST=0.9853;RSQ=0.7522;ERATE=0.0010;THETA=0.0057;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 121376260 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.807;BRSQ=0.578;LDAF=0.8147;AVGPOST=0.8407;RSQ=0.6276;ERATE=0.0056;THETA=0.0039;AC=1855;AN=2184 GT:DS:GL:BD 0.84935898 1 1 121376441 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.912;BRSQ=0.667;LDAF=0.1685;AVGPOST=0.9070;RSQ=0.7078;ERATE=0.0310;THETA=0.0097;AC=314;AN=2184 GT:DS:GL:BD 0.14377290 0 1 121376622 . AACT A 651 PASS INDEL;BAVGPOST=0.982;BRSQ=0.642;LDAF=0.0347;AVGPOST=0.9684;RSQ=0.6212;ERATE=0.0077;THETA=0.0101;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 121376624 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.912;BRSQ=0.808;LDAF=0.3944;AVGPOST=0.9088;RSQ=0.8269;ERATE=0.0072;THETA=0.0092;AC=841;AN=2184 GT:DS:GL:BD 0.38507327 0 1 121376741 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.757;LDAF=0.0034;AVGPOST=0.9972;RSQ=0.6767;ERATE=0.0006;THETA=0.0080;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121376767 . TC T 513 PASS INDEL;BAVGPOST=0.995;BRSQ=0.695;LDAF=0.0102;AVGPOST=0.9931;RSQ=0.7552;ERATE=0.0006;THETA=0.0036;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 121376902 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.687;LDAF=0.0048;AVGPOST=0.9956;RSQ=0.6437;ERATE=0.0005;THETA=0.0072;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121377979 . AG A 2321 PASS INDEL;BAVGPOST=0.611;BRSQ=0.299;LDAF=0.2776;AVGPOST=0.7357;RSQ=0.5085;ERATE=0.0051;THETA=0.0013;AC=460;AN=2184 GT:DS:GL:BD 0.21062271 0 1 121378325 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.927;BRSQ=0.634;LDAF=0.1224;AVGPOST=0.9058;RSQ=0.6385;ERATE=0.0077;THETA=0.0061;AC=196;AN=2184 GT:DS:GL:BD 0.08974359 0 1 121378330 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.748;BRSQ=0.457;LDAF=0.7150;AVGPOST=0.7757;RSQ=0.5873;ERATE=0.0111;THETA=0.0052;AC=1685;AN=2184 GT:DS:GL:BD 0.77152014 1 1 121378513 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.929;BRSQ=0.773;LDAF=0.1501;AVGPOST=0.9403;RSQ=0.8351;ERATE=0.0010;THETA=0.0083;AC=294;AN=2184 GT:DS:GL:BD 0.13461539 0 1 121379256 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.556;LDAF=0.0116;AVGPOST=0.9868;RSQ=0.5338;ERATE=0.0027;THETA=0.0120;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 121379258 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.702;LDAF=0.0094;AVGPOST=0.9936;RSQ=0.7115;ERATE=0.0009;THETA=0.0059;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 121379262 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.687;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5089;ERATE=0.0004;THETA=0.0098;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121379436 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.797;BRSQ=0.629;LDAF=0.8278;AVGPOST=0.8761;RSQ=0.7144;ERATE=0.0011;THETA=0.0024;AC=1863;AN=2184 GT:DS:GL:BD 0.85302198 1 1 121379944 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.918;BRSQ=0.851;LDAF=0.3557;AVGPOST=0.9319;RSQ=0.8818;ERATE=0.0075;THETA=0.0163;AC=762;AN=2184 GT:DS:GL:BD 0.34890109 0 1 121379979 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.933;BRSQ=0.597;LDAF=0.0858;AVGPOST=0.9344;RSQ=0.6891;ERATE=0.0047;THETA=0.0075;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 121380284 . CT C 147 PASS INDEL;BAVGPOST=0.997;BRSQ=0.689;LDAF=0.0053;AVGPOST=0.9958;RSQ=0.6998;ERATE=0.0006;THETA=0.0019;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121380303 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.889;BRSQ=0.867;LDAF=0.5238;AVGPOST=0.9103;RSQ=0.8836;ERATE=0.0027;THETA=0.0303;AC=1147;AN=2184 GT:DS:GL:BD 0.52518314 1 1 121380360 . AACT A 186 PASS INDEL;BAVGPOST=0.982;BRSQ=0.343;LDAF=0.0298;AVGPOST=0.9563;RSQ=0.3818;ERATE=0.0022;THETA=0.0219;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 121381065 . GAT G 813 PASS INDEL;BAVGPOST=0.985;BRSQ=0.516;LDAF=0.0179;AVGPOST=0.9822;RSQ=0.5725;ERATE=0.0015;THETA=0.0121;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 121381575 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.755;BRSQ=0.528;LDAF=0.7661;AVGPOST=0.8335;RSQ=0.6694;ERATE=0.0026;THETA=0.0076;AC=1757;AN=2184 GT:DS:GL:BD 0.80448717 1 1 121381584 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.911;BRSQ=0.473;LDAF=0.0761;AVGPOST=0.9291;RSQ=0.5888;ERATE=0.0026;THETA=0.0256;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 121381585 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.312;LDAF=0.0076;AVGPOST=0.9869;RSQ=0.2532;ERATE=0.0016;THETA=0.0037;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121381588 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.946;BRSQ=0.308;LDAF=0.0465;AVGPOST=0.9328;RSQ=0.3913;ERATE=0.0045;THETA=0.0016;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 121381605 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.958;BRSQ=0.504;LDAF=0.0244;AVGPOST=0.9756;RSQ=0.6196;ERATE=0.0014;THETA=0.0090;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 121382745 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.846;BRSQ=0.371;LDAF=0.1635;AVGPOST=0.8245;RSQ=0.4826;ERATE=0.0112;THETA=0.0117;AC=204;AN=2184 GT:DS:GL:BD 0.09340660 0 1 121382751 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.648;BRSQ=0.431;LDAF=0.5777;AVGPOST=0.7084;RSQ=0.5687;ERATE=0.0079;THETA=0.0073;AC=1322;AN=2184 GT:DS:GL:BD 0.60531133 1 1 121382752 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.885;BRSQ=0.338;LDAF=0.0710;AVGPOST=0.9112;RSQ=0.4384;ERATE=0.0021;THETA=0.0080;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 121382909 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.640;BRSQ=0.279;LDAF=0.7242;AVGPOST=0.7055;RSQ=0.4475;ERATE=0.0073;THETA=0.0179;AC=1789;AN=2184 GT:DS:GL:BD 0.81913918 1 1 121383134 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.857;BRSQ=0.328;LDAF=0.0796;AVGPOST=0.9079;RSQ=0.4968;ERATE=0.0032;THETA=0.0018;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 121383160 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.677;LDAF=0.0028;AVGPOST=0.9972;RSQ=0.5244;ERATE=0.0006;THETA=0.0135;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121383232 . G GT 122 PASS INDEL;BAVGPOST=0.996;BRSQ=0.200;LDAF=0.0173;AVGPOST=0.9670;RSQ=0.1701;ERATE=0.0030;THETA=0.0339;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121383266 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.709;BRSQ=0.503;LDAF=0.3566;AVGPOST=0.7726;RSQ=0.6390;ERATE=0.0161;THETA=0.0028;AC=659;AN=2184 GT:DS:GL:BD 0.30173993 0 1 121383353 . TA T 3081 PASS INDEL;BAVGPOST=0.798;BRSQ=0.270;LDAF=0.2064;AVGPOST=0.7248;RSQ=0.3322;ERATE=0.0101;THETA=0.0138;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 121383947 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.668;BRSQ=0.404;LDAF=0.6537;AVGPOST=0.7348;RSQ=0.5488;ERATE=0.0113;THETA=0.0083;AC=1519;AN=2184 GT:DS:GL:BD 0.69551283 1 1 121383959 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.265;LDAF=0.0058;AVGPOST=0.9912;RSQ=0.3366;ERATE=0.0009;THETA=0.0048;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121383963 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.954;BRSQ=0.416;LDAF=0.0511;AVGPOST=0.9358;RSQ=0.4686;ERATE=0.0016;THETA=0.0079;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 121383965 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.937;BRSQ=0.433;LDAF=0.0859;AVGPOST=0.8959;RSQ=0.4708;ERATE=0.0038;THETA=0.0103;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 121384117 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.562;BRSQ=0.169;LDAF=0.6122;AVGPOST=0.6404;RSQ=0.3393;ERATE=0.0227;THETA=0.0078;AC=1487;AN=2184 GT:DS:GL:BD 0.68086082 1 1 121384681 . T TC 79 PASS INDEL;BAVGPOST=0.967;BRSQ=0.154;LDAF=0.0279;AVGPOST=0.9556;RSQ=0.2974;ERATE=0.0021;THETA=0.0117;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 121385323 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.882;BRSQ=0.668;LDAF=0.1795;AVGPOST=0.8732;RSQ=0.6954;ERATE=0.0032;THETA=0.0026;AC=320;AN=2184 GT:DS:GL:BD 0.14652015 0 1 121385408 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.843;BRSQ=0.285;LDAF=0.1596;AVGPOST=0.8046;RSQ=0.4303;ERATE=0.0083;THETA=0.0127;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 121387141 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.763;BRSQ=0.578;LDAF=0.7993;AVGPOST=0.8663;RSQ=0.6975;ERATE=0.0104;THETA=0.0136;AC=1814;AN=2184 GT:DS:GL:BD 0.83058608 1 1 121390909 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.306;BRSQ=0.027;LDAF=0.7104;AVGPOST=0.5945;RSQ=0.1671;ERATE=0.0224;THETA=0.0201;AC=1927;AN=2184 GT:DS:GL:BD 0.88232601 1 1 121390924 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.571;BRSQ=0.123;LDAF=0.3094;AVGPOST=0.6301;RSQ=0.2649;ERATE=0.0177;THETA=0.0066;AC=333;AN=2184 GT:DS:GL:BD 0.15247253 0 1 121390925 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.828;BRSQ=0.091;LDAF=0.1705;AVGPOST=0.7221;RSQ=0.1783;ERATE=0.0194;THETA=0.0181;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 121390941 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.575;BRSQ=0.125;LDAF=0.2115;AVGPOST=0.7380;RSQ=0.3554;ERATE=0.0018;THETA=0.0099;AC=218;AN=2184 GT:DS:GL:BD 0.09981685 0 1 121390955 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.653;BRSQ=0.056;LDAF=0.2325;AVGPOST=0.6629;RSQ=0.2060;ERATE=0.0163;THETA=0.0078;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 121390961 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.318;BRSQ=0.046;LDAF=0.4415;AVGPOST=0.5739;RSQ=0.2748;ERATE=0.0180;THETA=0.0058;AC=738;AN=2184 GT:DS:GL:BD 0.33791208 0 1 121391117 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.875;BRSQ=0.086;LDAF=0.1781;AVGPOST=0.7045;RSQ=0.1523;ERATE=0.0234;THETA=0.0048;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 121392808 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.816;BRSQ=0.190;LDAF=0.1680;AVGPOST=0.7647;RSQ=0.3099;ERATE=0.0049;THETA=0.0071;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 121396085 . T TC 2736 PASS INDEL;BAVGPOST=0.465;BRSQ=0.137;LDAF=0.3841;AVGPOST=0.6198;RSQ=0.3461;ERATE=0.0094;THETA=0.0189;AC=606;AN=2184 GT:DS:GL:BD 0.27747253 0 1 121396087 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.803;BRSQ=0.209;LDAF=0.1773;AVGPOST=0.7518;RSQ=0.3154;ERATE=0.0104;THETA=0.0067;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 121398032 . GA G 9757 PASS INDEL;BAVGPOST=0.991;BRSQ=0.087;LDAF=0.9857;AVGPOST=0.9740;RSQ=0.2463;ERATE=0.0008;THETA=0.0166;AC=2176;AN=2184 GT:DS:GL:BD 0.99633700 1 1 121402100 . CA C 675 PASS INDEL;BAVGPOST=0.958;BRSQ=0.409;LDAF=0.0440;AVGPOST=0.9481;RSQ=0.4778;ERATE=0.0021;THETA=0.0156;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 121403742 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.489;BRSQ=0.247;LDAF=0.4430;AVGPOST=0.6436;RSQ=0.4178;ERATE=0.0050;THETA=0.0110;AC=909;AN=2184 GT:DS:GL:BD 0.41620880 0 1 121404958 . CA C 9918 PASS INDEL;BAVGPOST=0.615;BRSQ=0.350;LDAF=0.4483;AVGPOST=0.7069;RSQ=0.5321;ERATE=0.0119;THETA=0.0135;AC=928;AN=2184 GT:DS:GL:BD 0.42490843 0 1 121405658 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.631;BRSQ=0.108;LDAF=0.2141;AVGPOST=0.7261;RSQ=0.3236;ERATE=0.0078;THETA=0.0109;AC=184;AN=2184 GT:DS:GL:BD 0.08424909 0 1 121405661 . AC A 77 PASS INDEL;BAVGPOST=0.842;BRSQ=0.079;LDAF=0.1233;AVGPOST=0.7998;RSQ=0.2217;ERATE=0.0031;THETA=0.0138;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 121405875 . GC G 238 PASS INDEL;BAVGPOST=0.650;BRSQ=0.052;LDAF=0.1828;AVGPOST=0.7252;RSQ=0.2379;ERATE=0.0096;THETA=0.0021;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 121406186 . AG A 16 PASS INDEL;BAVGPOST=0.480;BRSQ=0.005;LDAF=0.2034;AVGPOST=0.6685;RSQ=0.1388;ERATE=0.0149;THETA=0.0128;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 121408674 . AC A 9 PASS INDEL;BAVGPOST=0.715;BRSQ=0.005;LDAF=0.1340;AVGPOST=0.7611;RSQ=0.1203;ERATE=0.0084;THETA=0.0105;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 121408689 . AG A 86 PASS INDEL;BAVGPOST=0.497;BRSQ=0.012;LDAF=0.2296;AVGPOST=0.6462;RSQ=0.1620;ERATE=0.0184;THETA=0.0252;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 121415587 . TA T 218 PASS INDEL;BAVGPOST=0.974;BRSQ=0.544;LDAF=0.0407;AVGPOST=0.9562;RSQ=0.5241;ERATE=0.0025;THETA=0.0099;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 121418008 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.501;BRSQ=0.419;LDAF=0.6398;AVGPOST=0.7083;RSQ=0.5539;ERATE=0.0094;THETA=0.0177;AC=1512;AN=2184 GT:DS:GL:BD 0.69230771 1 1 121425529 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.571;BRSQ=0.345;LDAF=0.6617;AVGPOST=0.7276;RSQ=0.5587;ERATE=0.0073;THETA=0.0195;AC=1543;AN=2184 GT:DS:GL:BD 0.70650184 1 1 121425532 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.916;BRSQ=0.349;LDAF=0.0900;AVGPOST=0.8882;RSQ=0.4368;ERATE=0.0050;THETA=0.0082;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 121425546 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.815;BRSQ=0.336;LDAF=0.1465;AVGPOST=0.8516;RSQ=0.5589;ERATE=0.0023;THETA=0.0073;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 121425551 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.623;BRSQ=0.367;LDAF=0.4227;AVGPOST=0.7175;RSQ=0.4674;ERATE=0.0217;THETA=0.0185;AC=810;AN=2184 GT:DS:GL:BD 0.37087911 0 1 121425731 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.549;BRSQ=0.265;LDAF=0.5660;AVGPOST=0.6620;RSQ=0.4887;ERATE=0.0040;THETA=0.0046;AC=1335;AN=2184 GT:DS:GL:BD 0.61126375 1 1 121425734 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.535;BRSQ=0.333;LDAF=0.6219;AVGPOST=0.6756;RSQ=0.4924;ERATE=0.0093;THETA=0.0057;AC=1495;AN=2184 GT:DS:GL:BD 0.68452382 1 1 121425737 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.157;LDAF=0.0106;AVGPOST=0.9799;RSQ=0.1589;ERATE=0.0015;THETA=0.0085;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121425746 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.955;BRSQ=0.318;LDAF=0.0469;AVGPOST=0.9320;RSQ=0.3388;ERATE=0.0048;THETA=0.0026;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 121425939 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.486;LDAF=0.0434;AVGPOST=0.9465;RSQ=0.5061;ERATE=0.0010;THETA=0.0063;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 121425946 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.943;BRSQ=0.454;LDAF=0.0715;AVGPOST=0.9155;RSQ=0.5124;ERATE=0.0016;THETA=0.0077;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 121425965 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.437;BRSQ=0.334;LDAF=0.8788;AVGPOST=0.8489;RSQ=0.4945;ERATE=0.0019;THETA=0.0094;AC=2022;AN=2184 GT:DS:GL:BD 0.92582417 1 1 121425977 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.792;BRSQ=0.365;LDAF=0.2006;AVGPOST=0.8144;RSQ=0.5431;ERATE=0.0040;THETA=0.0145;AC=287;AN=2184 GT:DS:GL:BD 0.13141026 0 1 121425988 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.910;BRSQ=0.274;LDAF=0.0738;AVGPOST=0.9023;RSQ=0.4142;ERATE=0.0049;THETA=0.0138;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 121425996 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.526;LDAF=0.0339;AVGPOST=0.9669;RSQ=0.5951;ERATE=0.0004;THETA=0.0187;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 121426462 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.944;BRSQ=0.669;LDAF=0.0477;AVGPOST=0.9817;RSQ=0.8513;ERATE=0.0009;THETA=0.0191;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 121426475 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.666;LDAF=0.0439;AVGPOST=0.9798;RSQ=0.8237;ERATE=0.0010;THETA=0.0185;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 121426493 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.488;LDAF=0.0138;AVGPOST=0.9834;RSQ=0.5016;ERATE=0.0010;THETA=0.0031;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 121426494 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.672;BRSQ=0.439;LDAF=0.3658;AVGPOST=0.7655;RSQ=0.6216;ERATE=0.0024;THETA=0.0032;AC=685;AN=2184 GT:DS:GL:BD 0.31364468 0 1 121426798 . AC A 135 PASS INDEL;BAVGPOST=0.613;BRSQ=0.003;LDAF=0.8461;AVGPOST=0.7367;RSQ=0.1508;ERATE=0.0114;THETA=0.0119;AC=2128;AN=2184 GT:DS:GL:BD 0.97435898 1 1 121427442 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.519;BRSQ=0.142;LDAF=0.4000;AVGPOST=0.6481;RSQ=0.2850;ERATE=0.0272;THETA=0.0132;AC=627;AN=2184 GT:DS:GL:BD 0.28708792 0 1 121427477 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.833;BRSQ=0.164;LDAF=0.1632;AVGPOST=0.7532;RSQ=0.2294;ERATE=0.0199;THETA=0.0042;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 121427499 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.568;BRSQ=0.204;LDAF=0.5581;AVGPOST=0.6708;RSQ=0.4197;ERATE=0.0048;THETA=0.0057;AC=1329;AN=2184 GT:DS:GL:BD 0.60851645 1 1 121427527 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.546;BRSQ=0.335;LDAF=0.7235;AVGPOST=0.7920;RSQ=0.5328;ERATE=0.0062;THETA=0.0210;AC=1698;AN=2184 GT:DS:GL:BD 0.77747256 1 1 121427541 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.781;BRSQ=0.352;LDAF=0.2763;AVGPOST=0.7887;RSQ=0.5042;ERATE=0.0195;THETA=0.0135;AC=434;AN=2184 GT:DS:GL:BD 0.19871795 0 1 121427552 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.943;BRSQ=0.424;LDAF=0.0564;AVGPOST=0.9400;RSQ=0.5563;ERATE=0.0033;THETA=0.0078;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 121427618 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.472;BRSQ=0.140;LDAF=0.3385;AVGPOST=0.6590;RSQ=0.3602;ERATE=0.0122;THETA=0.0196;AC=467;AN=2184 GT:DS:GL:BD 0.21382783 0 1 121427638 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.594;BRSQ=0.131;LDAF=0.3615;AVGPOST=0.6594;RSQ=0.3511;ERATE=0.0133;THETA=0.0153;AC=547;AN=2184 GT:DS:GL:BD 0.25045788 0 1 121427647 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.747;BRSQ=0.301;LDAF=0.2269;AVGPOST=0.7851;RSQ=0.4678;ERATE=0.0071;THETA=0.0122;AC=293;AN=2184 GT:DS:GL:BD 0.13415751 0 1 121427649 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.337;LDAF=0.0168;AVGPOST=0.9779;RSQ=0.4320;ERATE=0.0015;THETA=0.0075;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 121427652 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.870;BRSQ=0.360;LDAF=0.1329;AVGPOST=0.8509;RSQ=0.4715;ERATE=0.0018;THETA=0.0114;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 121427798 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.893;BRSQ=0.318;LDAF=0.1128;AVGPOST=0.8525;RSQ=0.3845;ERATE=0.0146;THETA=0.0165;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 121427813 . AT A 241 PASS INDEL;BAVGPOST=0.945;BRSQ=0.401;LDAF=0.0673;AVGPOST=0.9153;RSQ=0.4259;ERATE=0.0040;THETA=0.0263;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 121427861 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.165;LDAF=0.0539;AVGPOST=0.9054;RSQ=0.2018;ERATE=0.0048;THETA=0.0176;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 121427873 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.412;BRSQ=0.085;LDAF=0.3709;AVGPOST=0.6011;RSQ=0.2560;ERATE=0.0149;THETA=0.0119;AC=486;AN=2184 GT:DS:GL:BD 0.22252747 0 1 121427878 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.424;BRSQ=0.073;LDAF=0.3103;AVGPOST=0.6432;RSQ=0.3146;ERATE=0.0024;THETA=0.0103;AC=370;AN=2184 GT:DS:GL:BD 0.16941392 0 1 121427880 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.769;BRSQ=0.116;LDAF=0.2058;AVGPOST=0.6937;RSQ=0.2225;ERATE=0.0151;THETA=0.0029;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 121427884 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.903;BRSQ=0.119;LDAF=0.1031;AVGPOST=0.8271;RSQ=0.2116;ERATE=0.0077;THETA=0.0138;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 121427964 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.699;BRSQ=0.189;LDAF=0.2456;AVGPOST=0.7217;RSQ=0.3696;ERATE=0.0160;THETA=0.0052;AC=274;AN=2184 GT:DS:GL:BD 0.12545788 0 1 121428112 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.802;BRSQ=0.229;LDAF=0.1759;AVGPOST=0.7606;RSQ=0.3251;ERATE=0.0109;THETA=0.0069;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 121428119 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.956;BRSQ=0.204;LDAF=0.0310;AVGPOST=0.9531;RSQ=0.3332;ERATE=0.0017;THETA=0.0237;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 121428121 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.757;BRSQ=0.207;LDAF=0.2031;AVGPOST=0.7488;RSQ=0.3796;ERATE=0.0040;THETA=0.0165;AC=214;AN=2184 GT:DS:GL:BD 0.09798535 0 1 121428159 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.045;LDAF=0.0328;AVGPOST=0.9374;RSQ=0.1366;ERATE=0.0034;THETA=0.0125;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121428227 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.880;BRSQ=0.372;LDAF=0.0957;AVGPOST=0.9073;RSQ=0.6129;ERATE=0.0022;THETA=0.0107;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 121428238 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.713;BRSQ=0.457;LDAF=0.3459;AVGPOST=0.7843;RSQ=0.5940;ERATE=0.0010;THETA=0.0027;AC=608;AN=2184 GT:DS:GL:BD 0.27838829 0 1 121428251 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.731;BRSQ=0.390;LDAF=0.2543;AVGPOST=0.7904;RSQ=0.5640;ERATE=0.0012;THETA=0.0044;AC=406;AN=2184 GT:DS:GL:BD 0.18589744 0 1 121428255 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.713;BRSQ=0.460;LDAF=0.3435;AVGPOST=0.7849;RSQ=0.5968;ERATE=0.0020;THETA=0.0220;AC=620;AN=2184 GT:DS:GL:BD 0.28388280 0 1 121428269 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.663;BRSQ=0.316;LDAF=0.3737;AVGPOST=0.7147;RSQ=0.4774;ERATE=0.0101;THETA=0.0144;AC=691;AN=2184 GT:DS:GL:BD 0.31639194 0 1 121428284 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.932;BRSQ=0.280;LDAF=0.0534;AVGPOST=0.9266;RSQ=0.3991;ERATE=0.0014;THETA=0.0127;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 121428319 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.607;BRSQ=0.393;LDAF=0.3590;AVGPOST=0.6777;RSQ=0.4666;ERATE=0.0141;THETA=0.0174;AC=592;AN=2184 GT:DS:GL:BD 0.27106228 0 1 121428344 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.599;BRSQ=0.456;LDAF=0.5019;AVGPOST=0.6630;RSQ=0.5051;ERATE=0.0099;THETA=0.0080;AC=1047;AN=2184 GT:DS:GL:BD 0.47939560 0 1 121428359 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.304;LDAF=0.0105;AVGPOST=0.9832;RSQ=0.3270;ERATE=0.0012;THETA=0.0072;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 121428387 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.433;LDAF=0.0109;AVGPOST=0.9859;RSQ=0.4425;ERATE=0.0007;THETA=0.0073;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121428402 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.482;LDAF=0.0217;AVGPOST=0.9699;RSQ=0.3886;ERATE=0.0014;THETA=0.0181;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 121428403 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.919;BRSQ=0.237;LDAF=0.0674;AVGPOST=0.9063;RSQ=0.3972;ERATE=0.0035;THETA=0.0107;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 121428404 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.198;LDAF=0.0076;AVGPOST=0.9860;RSQ=0.1810;ERATE=0.0010;THETA=0.0063;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121428406 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.883;BRSQ=0.238;LDAF=0.0859;AVGPOST=0.8860;RSQ=0.4273;ERATE=0.0020;THETA=0.0174;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 121428422 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.811;BRSQ=0.286;LDAF=0.1476;AVGPOST=0.8318;RSQ=0.5168;ERATE=0.0021;THETA=0.0101;AC=176;AN=2184 GT:DS:GL:BD 0.08058608 0 1 121428423 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.292;LDAF=0.0227;AVGPOST=0.9640;RSQ=0.3273;ERATE=0.0006;THETA=0.0096;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 121428452 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.766;BRSQ=0.371;LDAF=0.2127;AVGPOST=0.7936;RSQ=0.5608;ERATE=0.0038;THETA=0.0050;AC=309;AN=2184 GT:DS:GL:BD 0.14148352 0 1 121428465 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.291;LDAF=0.0063;AVGPOST=0.9887;RSQ=0.1866;ERATE=0.0011;THETA=0.0111;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121428469 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.931;BRSQ=0.169;LDAF=0.0468;AVGPOST=0.9251;RSQ=0.3083;ERATE=0.0041;THETA=0.0032;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 121428490 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.253;LDAF=0.0080;AVGPOST=0.9873;RSQ=0.2711;ERATE=0.0015;THETA=0.0094;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121428492 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.217;LDAF=0.0068;AVGPOST=0.9873;RSQ=0.1740;ERATE=0.0014;THETA=0.0055;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121428778 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.516;LDAF=0.0108;AVGPOST=0.9875;RSQ=0.4828;ERATE=0.0008;THETA=0.0077;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 121428817 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.563;BRSQ=0.292;LDAF=0.8515;AVGPOST=0.8202;RSQ=0.4658;ERATE=0.0047;THETA=0.0142;AC=1994;AN=2184 GT:DS:GL:BD 0.91300368 1 1 121429056 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0099;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121429086 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.657;LDAF=0.0260;AVGPOST=0.9804;RSQ=0.6840;ERATE=0.0008;THETA=0.0110;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 121429091 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.656;LDAF=0.0258;AVGPOST=0.9817;RSQ=0.6953;ERATE=0.0011;THETA=0.0058;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 121429097 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.619;LDAF=0.0073;AVGPOST=0.9945;RSQ=0.6681;ERATE=0.0008;THETA=0.0089;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121429129 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.734;BRSQ=0.419;LDAF=0.3475;AVGPOST=0.7795;RSQ=0.5563;ERATE=0.0244;THETA=0.0058;AC=629;AN=2184 GT:DS:GL:BD 0.28800365 0 1 121429134 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.579;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4281;ERATE=0.0006;THETA=0.0118;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121429149 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.685;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.3756;ERATE=0.0005;THETA=0.0089;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121429153 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.347;LDAF=0.0228;AVGPOST=0.9711;RSQ=0.4541;ERATE=0.0014;THETA=0.0169;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 121429157 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.665;LDAF=0.0043;AVGPOST=0.9959;RSQ=0.5569;ERATE=0.0006;THETA=0.0141;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121429157 . A AT 297 PASS INDEL;BAVGPOST=0.880;BRSQ=0.330;LDAF=0.1141;AVGPOST=0.8651;RSQ=0.4836;ERATE=0.0015;THETA=0.0040;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 121429162 . C CT 512 PASS INDEL;BAVGPOST=0.872;BRSQ=0.324;LDAF=0.1040;AVGPOST=0.8745;RSQ=0.4621;ERATE=0.0043;THETA=0.0040;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 121429428 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.843;BRSQ=0.589;LDAF=0.2999;AVGPOST=0.8522;RSQ=0.6694;ERATE=0.0174;THETA=0.0051;AC=565;AN=2184 GT:DS:GL:BD 0.25869963 0 1 121429558 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.651;BRSQ=0.338;LDAF=0.3969;AVGPOST=0.7205;RSQ=0.4923;ERATE=0.0175;THETA=0.0125;AC=775;AN=2184 GT:DS:GL:BD 0.35485348 0 1 121429559 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.431;LDAF=0.0064;AVGPOST=0.9910;RSQ=0.3951;ERATE=0.0006;THETA=0.0052;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121429828 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.957;BRSQ=0.432;LDAF=0.0521;AVGPOST=0.9336;RSQ=0.4570;ERATE=0.0041;THETA=0.0107;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 121429866 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.467;LDAF=0.0114;AVGPOST=0.9915;RSQ=0.6927;ERATE=0.0008;THETA=0.0094;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 121430002 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.807;BRSQ=0.203;LDAF=0.1754;AVGPOST=0.7594;RSQ=0.3197;ERATE=0.0167;THETA=0.0129;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 121430017 . AG A 13 PASS INDEL;BAVGPOST=0.986;BRSQ=0.325;LDAF=0.0128;AVGPOST=0.9807;RSQ=0.3287;ERATE=0.0014;THETA=0.0139;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121430018 . GT G 37 PASS INDEL;BAVGPOST=0.961;BRSQ=0.187;LDAF=0.0274;AVGPOST=0.9542;RSQ=0.2524;ERATE=0.0033;THETA=0.0108;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 121430079 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.949;BRSQ=0.457;LDAF=0.0490;AVGPOST=0.9543;RSQ=0.6337;ERATE=0.0012;THETA=0.0096;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 121430082 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.661;BRSQ=0.569;LDAF=0.4240;AVGPOST=0.7656;RSQ=0.6823;ERATE=0.0024;THETA=0.0051;AC=813;AN=2184 GT:DS:GL:BD 0.37225273 0 1 121430091 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.940;BRSQ=0.504;LDAF=0.0555;AVGPOST=0.9576;RSQ=0.6948;ERATE=0.0017;THETA=0.0068;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 121430093 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.813;BRSQ=0.389;LDAF=0.1791;AVGPOST=0.8270;RSQ=0.5473;ERATE=0.0034;THETA=0.0136;AC=251;AN=2184 GT:DS:GL:BD 0.11492674 0 1 121430177 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.711;BRSQ=0.557;LDAF=0.3480;AVGPOST=0.8104;RSQ=0.7157;ERATE=0.0007;THETA=0.0104;AC=655;AN=2184 GT:DS:GL:BD 0.29990843 0 1 121430186 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.920;BRSQ=0.388;LDAF=0.0839;AVGPOST=0.8953;RSQ=0.4588;ERATE=0.0040;THETA=0.0058;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 121430187 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.315;LDAF=0.0370;AVGPOST=0.9467;RSQ=0.3771;ERATE=0.0043;THETA=0.0072;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 121430188 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.833;BRSQ=0.380;LDAF=0.1399;AVGPOST=0.8549;RSQ=0.5431;ERATE=0.0011;THETA=0.0168;AC=177;AN=2184 GT:DS:GL:BD 0.08104396 0 1 121430563 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.733;BRSQ=0.431;LDAF=0.5476;AVGPOST=0.7767;RSQ=0.5594;ERATE=0.0286;THETA=0.0183;AC=1221;AN=2184 GT:DS:GL:BD 0.55906594 1 1 121432180 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.509;BRSQ=0.190;LDAF=0.5587;AVGPOST=0.6440;RSQ=0.4342;ERATE=0.0056;THETA=0.0077;AC=1280;AN=2184 GT:DS:GL:BD 0.58608061 1 1 121432186 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.859;BRSQ=0.156;LDAF=0.1101;AVGPOST=0.8232;RSQ=0.2509;ERATE=0.0072;THETA=0.0075;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 121432198 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.660;BRSQ=0.097;LDAF=0.1877;AVGPOST=0.7311;RSQ=0.2619;ERATE=0.0092;THETA=0.0217;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 121432210 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.582;BRSQ=0.274;LDAF=0.3177;AVGPOST=0.6937;RSQ=0.4624;ERATE=0.0030;THETA=0.0089;AC=505;AN=2184 GT:DS:GL:BD 0.23122710 0 1 121432213 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.573;BRSQ=0.296;LDAF=0.3403;AVGPOST=0.6840;RSQ=0.4721;ERATE=0.0031;THETA=0.0077;AC=554;AN=2184 GT:DS:GL:BD 0.25366300 0 1 121433732 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.508;BRSQ=0.341;LDAF=0.5378;AVGPOST=0.6672;RSQ=0.4901;ERATE=0.0133;THETA=0.0188;AC=1161;AN=2184 GT:DS:GL:BD 0.53159338 1 1 121433739 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.885;BRSQ=0.195;LDAF=0.1055;AVGPOST=0.8364;RSQ=0.2901;ERATE=0.0054;THETA=0.0088;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 121433745 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.188;LDAF=0.0424;AVGPOST=0.9293;RSQ=0.2496;ERATE=0.0040;THETA=0.0093;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 121433751 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.723;BRSQ=0.192;LDAF=0.1641;AVGPOST=0.7862;RSQ=0.4073;ERATE=0.0046;THETA=0.0099;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 121433757 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.417;BRSQ=0.333;LDAF=0.6728;AVGPOST=0.6979;RSQ=0.4853;ERATE=0.0079;THETA=0.0096;AC=1576;AN=2184 GT:DS:GL:BD 0.72161174 1 1 121433762 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.429;BRSQ=0.313;LDAF=0.6597;AVGPOST=0.6761;RSQ=0.4389;ERATE=0.0072;THETA=0.0168;AC=1557;AN=2184 GT:DS:GL:BD 0.71291208 1 1 121434749 . G GT 1362 PASS INDEL;BAVGPOST=0.937;BRSQ=0.487;LDAF=0.0753;AVGPOST=0.9191;RSQ=0.5220;ERATE=0.0022;THETA=0.0119;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 121434751 . T TC 38 PASS INDEL;BAVGPOST=0.939;BRSQ=0.484;LDAF=0.0564;AVGPOST=0.9353;RSQ=0.4950;ERATE=0.0013;THETA=0.0220;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 121434791 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.925;BRSQ=0.345;LDAF=0.0727;AVGPOST=0.9044;RSQ=0.4025;ERATE=0.0057;THETA=0.0014;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 121434795 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.812;BRSQ=0.313;LDAF=0.2112;AVGPOST=0.7705;RSQ=0.4179;ERATE=0.0167;THETA=0.0195;AC=240;AN=2184 GT:DS:GL:BD 0.10989011 0 1 121434803 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.384;LDAF=0.0071;AVGPOST=0.9894;RSQ=0.3089;ERATE=0.0010;THETA=0.0051;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121434988 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.508;BRSQ=0.224;LDAF=0.5593;AVGPOST=0.6246;RSQ=0.3663;ERATE=0.0125;THETA=0.0151;AC=1296;AN=2184 GT:DS:GL:BD 0.59340662 1 1 121435133 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.748;BRSQ=0.508;LDAF=0.2625;AVGPOST=0.7546;RSQ=0.5451;ERATE=0.0027;THETA=0.0113;AC=406;AN=2184 GT:DS:GL:BD 0.18589744 0 1 121435141 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.827;BRSQ=0.201;LDAF=0.1752;AVGPOST=0.7662;RSQ=0.3503;ERATE=0.0060;THETA=0.0098;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 121435165 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.289;LDAF=0.0262;AVGPOST=0.9551;RSQ=0.2590;ERATE=0.0024;THETA=0.0070;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 121435166 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.850;BRSQ=0.247;LDAF=0.1375;AVGPOST=0.8145;RSQ=0.3683;ERATE=0.0049;THETA=0.0159;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 121435180 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.862;BRSQ=0.235;LDAF=0.1115;AVGPOST=0.8449;RSQ=0.3603;ERATE=0.0049;THETA=0.0014;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 121435211 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.659;BRSQ=0.265;LDAF=0.3322;AVGPOST=0.6925;RSQ=0.3779;ERATE=0.0189;THETA=0.0191;AC=467;AN=2184 GT:DS:GL:BD 0.21382783 0 1 121435296 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.749;BRSQ=0.243;LDAF=0.2560;AVGPOST=0.7345;RSQ=0.3670;ERATE=0.0332;THETA=0.0114;AC=294;AN=2184 GT:DS:GL:BD 0.13461539 0 1 121435301 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.504;LDAF=0.0160;AVGPOST=0.9764;RSQ=0.3887;ERATE=0.0019;THETA=0.0063;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121435317 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.951;BRSQ=0.257;LDAF=0.0509;AVGPOST=0.9221;RSQ=0.3271;ERATE=0.0041;THETA=0.0208;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 121435416 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.958;BRSQ=0.230;LDAF=0.0136;AVGPOST=0.9790;RSQ=0.3310;ERATE=0.0011;THETA=0.0118;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121435423 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.528;BRSQ=0.431;LDAF=0.7300;AVGPOST=0.7763;RSQ=0.5905;ERATE=0.0010;THETA=0.0064;AC=1685;AN=2184 GT:DS:GL:BD 0.77152014 1 1 121435426 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.781;BRSQ=0.398;LDAF=0.1973;AVGPOST=0.8132;RSQ=0.5823;ERATE=0.0018;THETA=0.0027;AC=316;AN=2184 GT:DS:GL:BD 0.14468865 0 1 121435433 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.773;BRSQ=0.434;LDAF=0.2206;AVGPOST=0.8037;RSQ=0.5811;ERATE=0.0049;THETA=0.0065;AC=359;AN=2184 GT:DS:GL:BD 0.16437729 0 1 121435440 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.958;BRSQ=0.624;LDAF=0.0515;AVGPOST=0.9651;RSQ=0.6979;ERATE=0.0011;THETA=0.0066;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 121435452 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.439;LDAF=0.0052;AVGPOST=0.9917;RSQ=0.2807;ERATE=0.0013;THETA=0.0193;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121435467 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.922;BRSQ=0.531;LDAF=0.0980;AVGPOST=0.9146;RSQ=0.5925;ERATE=0.0119;THETA=0.0049;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 121435554 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.913;BRSQ=0.654;LDAF=0.1115;AVGPOST=0.9017;RSQ=0.6489;ERATE=0.0013;THETA=0.0107;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 121435555 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.951;BRSQ=0.292;LDAF=0.0395;AVGPOST=0.9409;RSQ=0.3420;ERATE=0.0052;THETA=0.0033;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 121435556 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.916;BRSQ=0.414;LDAF=0.0818;AVGPOST=0.9035;RSQ=0.5120;ERATE=0.0017;THETA=0.0072;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 121435560 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.909;BRSQ=0.436;LDAF=0.0928;AVGPOST=0.8993;RSQ=0.5397;ERATE=0.0016;THETA=0.0072;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 121435564 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.913;BRSQ=0.420;LDAF=0.0911;AVGPOST=0.8993;RSQ=0.5340;ERATE=0.0013;THETA=0.0076;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 121435577 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.338;LDAF=0.0167;AVGPOST=0.9782;RSQ=0.4242;ERATE=0.0013;THETA=0.0036;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 121435609 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.750;BRSQ=0.455;LDAF=0.2454;AVGPOST=0.7929;RSQ=0.6144;ERATE=0.0052;THETA=0.0050;AC=392;AN=2184 GT:DS:GL:BD 0.17948718 0 1 121435613 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.762;BRSQ=0.446;LDAF=0.2085;AVGPOST=0.8187;RSQ=0.6340;ERATE=0.0013;THETA=0.0043;AC=332;AN=2184 GT:DS:GL:BD 0.15201466 0 1 121435614 . T TAG 26 PASS INDEL;BAVGPOST=0.931;BRSQ=0.117;LDAF=0.0553;AVGPOST=0.9059;RSQ=0.2728;ERATE=0.0035;THETA=0.0053;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 121435617 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.506;LDAF=0.0136;AVGPOST=0.9747;RSQ=0.2074;ERATE=0.0010;THETA=0.0134;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121435624 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.951;BRSQ=0.333;LDAF=0.0442;AVGPOST=0.9362;RSQ=0.3641;ERATE=0.0042;THETA=0.0178;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 121435625 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.332;LDAF=0.0551;AVGPOST=0.9265;RSQ=0.4482;ERATE=0.0023;THETA=0.0020;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 121435628 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.580;LDAF=0.0020;AVGPOST=0.9970;RSQ=0.2821;ERATE=0.0006;THETA=0.0110;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121435637 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.442;LDAF=0.0039;AVGPOST=0.9954;RSQ=0.4521;ERATE=0.0008;THETA=0.0099;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121435638 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.900;BRSQ=0.333;LDAF=0.0814;AVGPOST=0.9009;RSQ=0.4754;ERATE=0.0058;THETA=0.0027;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 121435642 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.886;BRSQ=0.400;LDAF=0.1127;AVGPOST=0.8708;RSQ=0.5345;ERATE=0.0022;THETA=0.0037;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 121435643 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.949;BRSQ=0.708;LDAF=0.0594;AVGPOST=0.9599;RSQ=0.7703;ERATE=0.0008;THETA=0.0071;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 121435645 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.440;LDAF=0.0107;AVGPOST=0.9856;RSQ=0.3984;ERATE=0.0022;THETA=0.0035;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121435652 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.767;BRSQ=0.399;LDAF=0.2058;AVGPOST=0.8222;RSQ=0.5709;ERATE=0.0110;THETA=0.0023;AC=305;AN=2184 GT:DS:GL:BD 0.13965201 0 1 121435666 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.947;BRSQ=0.284;LDAF=0.0393;AVGPOST=0.9447;RSQ=0.4181;ERATE=0.0013;THETA=0.0049;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 121435672 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.865;BRSQ=0.271;LDAF=0.0986;AVGPOST=0.8723;RSQ=0.4248;ERATE=0.0042;THETA=0.0077;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 121435674 . CT C 45 PASS INDEL;BAVGPOST=0.917;BRSQ=0.155;LDAF=0.0738;AVGPOST=0.8824;RSQ=0.2928;ERATE=0.0074;THETA=0.0090;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 121435676 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.523;BRSQ=0.377;LDAF=0.7559;AVGPOST=0.7767;RSQ=0.5550;ERATE=0.0059;THETA=0.0012;AC=1779;AN=2184 GT:DS:GL:BD 0.81456041 1 1 121435677 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.805;BRSQ=0.344;LDAF=0.1562;AVGPOST=0.8313;RSQ=0.5389;ERATE=0.0023;THETA=0.0117;AC=203;AN=2184 GT:DS:GL:BD 0.09294872 0 1 121435683 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.778;BRSQ=0.320;LDAF=0.1888;AVGPOST=0.8130;RSQ=0.5187;ERATE=0.0083;THETA=0.0100;AC=257;AN=2184 GT:DS:GL:BD 0.11767399 0 1 121435685 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.569;LDAF=0.0202;AVGPOST=0.9811;RSQ=0.5878;ERATE=0.0009;THETA=0.0050;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 121435717 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.562;LDAF=0.0389;AVGPOST=0.9516;RSQ=0.5040;ERATE=0.0010;THETA=0.0125;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 121435729 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.271;LDAF=0.0197;AVGPOST=0.9716;RSQ=0.3738;ERATE=0.0021;THETA=0.0148;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 121435740 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.323;LDAF=0.0191;AVGPOST=0.9681;RSQ=0.2696;ERATE=0.0034;THETA=0.0067;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121435740 . G GC 1030 PASS INDEL;BAVGPOST=0.810;BRSQ=0.301;LDAF=0.1567;AVGPOST=0.8189;RSQ=0.4843;ERATE=0.0092;THETA=0.0087;AC=184;AN=2184 GT:DS:GL:BD 0.08424909 0 1 121435741 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.935;BRSQ=0.277;LDAF=0.0616;AVGPOST=0.9130;RSQ=0.3795;ERATE=0.0031;THETA=0.0075;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 121435744 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.937;BRSQ=0.305;LDAF=0.0471;AVGPOST=0.9395;RSQ=0.4824;ERATE=0.0006;THETA=0.0077;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 121435747 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.933;BRSQ=0.306;LDAF=0.0500;AVGPOST=0.9326;RSQ=0.4401;ERATE=0.0017;THETA=0.0021;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 121435755 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.354;LDAF=0.0059;AVGPOST=0.9929;RSQ=0.4463;ERATE=0.0007;THETA=0.0121;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121435763 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.242;LDAF=0.0069;AVGPOST=0.9880;RSQ=0.2580;ERATE=0.0012;THETA=0.0052;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121435771 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.940;BRSQ=0.551;LDAF=0.0570;AVGPOST=0.9601;RSQ=0.6950;ERATE=0.0018;THETA=0.0066;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 121435784 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.954;BRSQ=0.532;LDAF=0.0458;AVGPOST=0.9579;RSQ=0.6229;ERATE=0.0007;THETA=0.0018;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 121435788 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.954;BRSQ=0.534;LDAF=0.0415;AVGPOST=0.9656;RSQ=0.6612;ERATE=0.0006;THETA=0.0046;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 121435790 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.931;BRSQ=0.500;LDAF=0.0697;AVGPOST=0.9315;RSQ=0.5951;ERATE=0.0013;THETA=0.0095;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 121435797 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.557;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.3940;ERATE=0.0006;THETA=0.0178;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121435803 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.502;LDAF=0.0331;AVGPOST=0.9672;RSQ=0.5997;ERATE=0.0007;THETA=0.0079;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 121435808 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.928;BRSQ=0.523;LDAF=0.0813;AVGPOST=0.9213;RSQ=0.5995;ERATE=0.0009;THETA=0.0078;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 121435810 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.812;BRSQ=0.497;LDAF=0.2055;AVGPOST=0.8448;RSQ=0.6188;ERATE=0.0104;THETA=0.0154;AC=329;AN=2184 GT:DS:GL:BD 0.15064102 0 1 121435818 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.934;BRSQ=0.536;LDAF=0.0690;AVGPOST=0.9303;RSQ=0.5891;ERATE=0.0006;THETA=0.0070;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 121435821 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.649;LDAF=0.0047;AVGPOST=0.9931;RSQ=0.3704;ERATE=0.0008;THETA=0.0093;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121435826 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.924;BRSQ=0.535;LDAF=0.0740;AVGPOST=0.9256;RSQ=0.5701;ERATE=0.0013;THETA=0.0064;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 121435827 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.429;LDAF=0.0042;AVGPOST=0.9957;RSQ=0.5452;ERATE=0.0007;THETA=0.0111;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121435828 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.566;LDAF=0.0031;AVGPOST=0.9962;RSQ=0.4443;ERATE=0.0007;THETA=0.0026;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121435839 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.776;BRSQ=0.730;LDAF=0.3677;AVGPOST=0.8365;RSQ=0.7925;ERATE=0.0037;THETA=0.0073;AC=712;AN=2184 GT:DS:GL:BD 0.32600734 0 1 121435860 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.597;BRSQ=0.506;LDAF=0.6537;AVGPOST=0.7763;RSQ=0.6384;ERATE=0.0040;THETA=0.0076;AC=1429;AN=2184 GT:DS:GL:BD 0.65430403 1 1 121435861 . TA T 734 PASS INDEL;BAVGPOST=0.916;BRSQ=0.302;LDAF=0.0520;AVGPOST=0.9324;RSQ=0.4097;ERATE=0.0018;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 121435893 . A AG 1664 PASS INDEL;BAVGPOST=0.871;BRSQ=0.558;LDAF=0.1196;AVGPOST=0.9067;RSQ=0.7019;ERATE=0.0032;THETA=0.0077;AC=206;AN=2184 GT:DS:GL:BD 0.09432235 0 1 121435894 rs112092710 A AG 3148 PASS INDEL;BAVGPOST=0.842;BRSQ=0.552;LDAF=0.1973;AVGPOST=0.8624;RSQ=0.6816;ERATE=0.0086;THETA=0.0074;AC=338;AN=2184 GT:DS:GL:BD 0.15476191 0 1 121435908 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.592;LDAF=0.0093;AVGPOST=0.9873;RSQ=0.3970;ERATE=0.0012;THETA=0.0120;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121435912 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.677;BRSQ=0.566;LDAF=0.3585;AVGPOST=0.7777;RSQ=0.6571;ERATE=0.0080;THETA=0.0081;AC=682;AN=2184 GT:DS:GL:BD 0.31227106 0 1 121435920 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.429;LDAF=0.0242;AVGPOST=0.9691;RSQ=0.4299;ERATE=0.0025;THETA=0.0100;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 121435923 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.766;BRSQ=0.539;LDAF=0.2568;AVGPOST=0.8208;RSQ=0.6618;ERATE=0.0018;THETA=0.0083;AC=445;AN=2184 GT:DS:GL:BD 0.20375457 0 1 121435927 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.822;BRSQ=0.317;LDAF=0.1590;AVGPOST=0.8342;RSQ=0.5063;ERATE=0.0010;THETA=0.0056;AC=222;AN=2184 GT:DS:GL:BD 0.10164835 0 1 121435928 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.373;LDAF=0.0083;AVGPOST=0.9893;RSQ=0.4293;ERATE=0.0018;THETA=0.0075;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121435942 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.877;BRSQ=0.356;LDAF=0.1037;AVGPOST=0.8819;RSQ=0.4773;ERATE=0.0057;THETA=0.0024;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 121435947 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.815;BRSQ=0.725;LDAF=0.2443;AVGPOST=0.8715;RSQ=0.7890;ERATE=0.0017;THETA=0.0273;AC=456;AN=2184 GT:DS:GL:BD 0.20879121 0 1 121435949 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.924;BRSQ=0.454;LDAF=0.0678;AVGPOST=0.9274;RSQ=0.5313;ERATE=0.0045;THETA=0.0020;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 121436000 . GT G 132 PASS INDEL;BAVGPOST=0.958;BRSQ=0.291;LDAF=0.0355;AVGPOST=0.9476;RSQ=0.3553;ERATE=0.0036;THETA=0.0098;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 121436002 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.640;LDAF=0.0483;AVGPOST=0.9526;RSQ=0.6471;ERATE=0.0014;THETA=0.0294;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 121436007 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.935;BRSQ=0.372;LDAF=0.0732;AVGPOST=0.9025;RSQ=0.4099;ERATE=0.0058;THETA=0.0085;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 121436021 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.900;BRSQ=0.389;LDAF=0.0887;AVGPOST=0.9100;RSQ=0.5201;ERATE=0.0098;THETA=0.0044;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 121436022 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.327;LDAF=0.0024;AVGPOST=0.9959;RSQ=0.2397;ERATE=0.0007;THETA=0.0042;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121436034 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.221;LDAF=0.0085;AVGPOST=0.9861;RSQ=0.2926;ERATE=0.0021;THETA=0.0161;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121436043 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.375;LDAF=0.0094;AVGPOST=0.9848;RSQ=0.2963;ERATE=0.0010;THETA=0.0059;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121436201 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.808;BRSQ=0.543;LDAF=0.2082;AVGPOST=0.8570;RSQ=0.6824;ERATE=0.0048;THETA=0.0067;AC=338;AN=2184 GT:DS:GL:BD 0.15476191 0 1 121436201 . AT A 2919 PASS INDEL;BAVGPOST=0.945;BRSQ=0.585;LDAF=0.0576;AVGPOST=0.9529;RSQ=0.6872;ERATE=0.0015;THETA=0.0114;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 121436205 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.918;BRSQ=0.392;LDAF=0.0844;AVGPOST=0.8980;RSQ=0.4689;ERATE=0.0036;THETA=0.0173;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 121436217 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.472;LDAF=0.0031;AVGPOST=0.9965;RSQ=0.4984;ERATE=0.0009;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121436832 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.817;BRSQ=0.445;LDAF=0.1745;AVGPOST=0.8293;RSQ=0.5929;ERATE=0.0067;THETA=0.0079;AC=247;AN=2184 GT:DS:GL:BD 0.11309524 0 1 121437044 . GC G 283 PASS INDEL;BAVGPOST=0.963;BRSQ=0.319;LDAF=0.0371;AVGPOST=0.9457;RSQ=0.3448;ERATE=0.0036;THETA=0.0126;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 121437398 . T TC 26 PASS INDEL;BAVGPOST=0.928;BRSQ=0.070;LDAF=0.0855;AVGPOST=0.8485;RSQ=0.1613;ERATE=0.0059;THETA=0.0086;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 121439792 . C CAAA 29 PASS INDEL;BAVGPOST=0.672;BRSQ=0.004;LDAF=0.1251;AVGPOST=0.7797;RSQ=0.1508;ERATE=0.0068;THETA=0.0208;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 121442167 . T TCC 36 PASS INDEL;BAVGPOST=0.487;BRSQ=0.005;LDAF=0.1867;AVGPOST=0.6949;RSQ=0.1465;ERATE=0.0097;THETA=0.0030;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 121442430 . C CAG 61 PASS INDEL;BAVGPOST=0.941;BRSQ=0.085;LDAF=0.0603;AVGPOST=0.8965;RSQ=0.2481;ERATE=0.0030;THETA=0.0150;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 121442434 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.405;BRSQ=0.131;LDAF=0.3743;AVGPOST=0.5987;RSQ=0.2856;ERATE=0.0188;THETA=0.0075;AC=476;AN=2184 GT:DS:GL:BD 0.21794872 0 1 121442456 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.955;BRSQ=0.376;LDAF=0.0531;AVGPOST=0.9283;RSQ=0.4006;ERATE=0.0048;THETA=0.0091;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 121442457 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.800;BRSQ=0.354;LDAF=0.2374;AVGPOST=0.8019;RSQ=0.4826;ERATE=0.0238;THETA=0.0128;AC=331;AN=2184 GT:DS:GL:BD 0.15155677 0 1 121442480 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.514;BRSQ=0.176;LDAF=0.5622;AVGPOST=0.6490;RSQ=0.3712;ERATE=0.0180;THETA=0.0234;AC=1265;AN=2184 GT:DS:GL:BD 0.57921243 1 1 121443004 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.655;BRSQ=0.178;LDAF=0.2519;AVGPOST=0.7228;RSQ=0.4265;ERATE=0.0019;THETA=0.0047;AC=314;AN=2184 GT:DS:GL:BD 0.14377290 0 1 121443006 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.833;BRSQ=0.185;LDAF=0.1141;AVGPOST=0.8417;RSQ=0.3319;ERATE=0.0074;THETA=0.0142;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 121443040 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.399;BRSQ=0.151;LDAF=0.5111;AVGPOST=0.6065;RSQ=0.3740;ERATE=0.0071;THETA=0.0160;AC=1081;AN=2184 GT:DS:GL:BD 0.49496338 0 1 121443057 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.503;BRSQ=0.031;LDAF=0.4252;AVGPOST=0.6059;RSQ=0.3356;ERATE=0.0020;THETA=0.0278;AC=782;AN=2184 GT:DS:GL:BD 0.35805860 0 1 121443066 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.860;BRSQ=0.020;LDAF=0.0513;AVGPOST=0.9037;RSQ=0.1474;ERATE=0.0022;THETA=0.0102;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121443073 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.407;BRSQ=0.117;LDAF=0.4335;AVGPOST=0.5946;RSQ=0.2925;ERATE=0.0060;THETA=0.0046;AC=757;AN=2184 GT:DS:GL:BD 0.34661171 0 1 121443095 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.741;BRSQ=0.262;LDAF=0.1862;AVGPOST=0.8226;RSQ=0.4863;ERATE=0.0066;THETA=0.0099;AC=237;AN=2184 GT:DS:GL:BD 0.10851648 0 1 121444906 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.371;LDAF=0.0731;AVGPOST=0.8919;RSQ=0.3831;ERATE=0.0016;THETA=0.0160;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 121445300 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.875;BRSQ=0.091;LDAF=0.1193;AVGPOST=0.8039;RSQ=0.2111;ERATE=0.0060;THETA=0.0052;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 121445301 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.486;BRSQ=0.087;LDAF=0.3555;AVGPOST=0.6341;RSQ=0.3339;ERATE=0.0069;THETA=0.0072;AC=484;AN=2184 GT:DS:GL:BD 0.22161172 0 1 121445317 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.701;BRSQ=0.287;LDAF=0.2208;AVGPOST=0.7771;RSQ=0.5020;ERATE=0.0024;THETA=0.0026;AC=271;AN=2184 GT:DS:GL:BD 0.12408425 0 1 121445322 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.700;BRSQ=0.287;LDAF=0.2270;AVGPOST=0.7673;RSQ=0.4906;ERATE=0.0020;THETA=0.0074;AC=275;AN=2184 GT:DS:GL:BD 0.12591575 0 1 121445390 . C CAAA 14 PASS INDEL;BAVGPOST=0.764;BRSQ=0.009;LDAF=0.0713;AVGPOST=0.8686;RSQ=0.1688;ERATE=0.0015;THETA=0.0182;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 121447141 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.766;BRSQ=0.109;LDAF=0.1843;AVGPOST=0.7217;RSQ=0.2344;ERATE=0.0098;THETA=0.0059;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 121447147 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.478;BRSQ=0.054;LDAF=0.6965;AVGPOST=0.6371;RSQ=0.2871;ERATE=0.0096;THETA=0.0168;AC=1769;AN=2184 GT:DS:GL:BD 0.80998170 1 1 121447167 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.462;BRSQ=0.041;LDAF=0.6734;AVGPOST=0.6120;RSQ=0.2695;ERATE=0.0079;THETA=0.0045;AC=1723;AN=2184 GT:DS:GL:BD 0.78891939 1 1 121447368 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.141;LDAF=0.0255;AVGPOST=0.9553;RSQ=0.1966;ERATE=0.0014;THETA=0.0140;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 121447383 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.805;BRSQ=0.360;LDAF=0.1637;AVGPOST=0.8355;RSQ=0.4904;ERATE=0.0046;THETA=0.0147;AC=207;AN=2184 GT:DS:GL:BD 0.09478022 0 1 121448671 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.745;LDAF=0.0084;AVGPOST=0.9926;RSQ=0.6711;ERATE=0.0006;THETA=0.0092;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 121448961 . C CT 1635 PASS INDEL;BAVGPOST=0.918;BRSQ=0.552;LDAF=0.0978;AVGPOST=0.9217;RSQ=0.6606;ERATE=0.0047;THETA=0.0099;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 121449118 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.582;BRSQ=0.608;LDAF=0.7473;AVGPOST=0.8308;RSQ=0.6909;ERATE=0.0041;THETA=0.0097;AC=1689;AN=2184 GT:DS:GL:BD 0.77335167 1 1 121449360 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.944;BRSQ=0.582;LDAF=0.0776;AVGPOST=0.9321;RSQ=0.5884;ERATE=0.0078;THETA=0.0161;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 121449401 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.823;BRSQ=0.487;LDAF=0.2549;AVGPOST=0.8185;RSQ=0.5891;ERATE=0.0073;THETA=0.0025;AC=426;AN=2184 GT:DS:GL:BD 0.19505495 0 1 121449606 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.567;BRSQ=0.544;LDAF=0.3973;AVGPOST=0.7338;RSQ=0.6145;ERATE=0.0014;THETA=0.0082;AC=781;AN=2184 GT:DS:GL:BD 0.35760072 0 1 121449609 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.201;LDAF=0.0045;AVGPOST=0.9915;RSQ=0.1347;ERATE=0.0014;THETA=0.0151;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121449615 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.218;LDAF=0.0030;AVGPOST=0.9947;RSQ=0.1863;ERATE=0.0007;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121449623 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.927;BRSQ=0.307;LDAF=0.0793;AVGPOST=0.8876;RSQ=0.3340;ERATE=0.0054;THETA=0.0023;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 121449630 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.586;BRSQ=0.529;LDAF=0.3914;AVGPOST=0.7289;RSQ=0.6022;ERATE=0.0039;THETA=0.0083;AC=778;AN=2184 GT:DS:GL:BD 0.35622710 0 1 121449637 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.886;BRSQ=0.227;LDAF=0.0778;AVGPOST=0.8912;RSQ=0.3580;ERATE=0.0034;THETA=0.0022;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 121449641 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.701;BRSQ=0.353;LDAF=0.3126;AVGPOST=0.7363;RSQ=0.5214;ERATE=0.0032;THETA=0.0054;AC=574;AN=2184 GT:DS:GL:BD 0.26282051 0 1 121449646 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.930;BRSQ=0.186;LDAF=0.0608;AVGPOST=0.9046;RSQ=0.3232;ERATE=0.0021;THETA=0.0065;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 121449653 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.932;BRSQ=0.188;LDAF=0.0458;AVGPOST=0.9265;RSQ=0.3061;ERATE=0.0008;THETA=0.0073;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 121449670 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.701;BRSQ=0.374;LDAF=0.2013;AVGPOST=0.8170;RSQ=0.6200;ERATE=0.0022;THETA=0.0054;AC=296;AN=2184 GT:DS:GL:BD 0.13553114 0 1 121449888 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7575;ERATE=0.0003;THETA=0.0073;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121449927 . TC T 310 PASS INDEL;BAVGPOST=0.990;BRSQ=0.520;LDAF=0.0192;AVGPOST=0.9754;RSQ=0.4460;ERATE=0.0040;THETA=0.0117;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 121450003 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.931;BRSQ=0.532;LDAF=0.0691;AVGPOST=0.9459;RSQ=0.6578;ERATE=0.0021;THETA=0.0018;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 121450012 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.765;BRSQ=0.500;LDAF=0.2104;AVGPOST=0.8224;RSQ=0.6540;ERATE=0.0040;THETA=0.0046;AC=319;AN=2184 GT:DS:GL:BD 0.14606227 0 1 121450031 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.678;LDAF=0.0110;AVGPOST=0.9882;RSQ=0.6037;ERATE=0.0013;THETA=0.0090;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 121450032 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.839;BRSQ=0.285;LDAF=0.1424;AVGPOST=0.8227;RSQ=0.4116;ERATE=0.0091;THETA=0.0150;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 121450049 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.869;BRSQ=0.426;LDAF=0.1131;AVGPOST=0.8942;RSQ=0.5642;ERATE=0.0022;THETA=0.0088;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 121450054 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.136;LDAF=0.0079;AVGPOST=0.9864;RSQ=0.2226;ERATE=0.0010;THETA=0.0044;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121450062 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.478;LDAF=0.0108;AVGPOST=0.9838;RSQ=0.3103;ERATE=0.0018;THETA=0.0141;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 121450064 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.729;BRSQ=0.183;LDAF=0.1626;AVGPOST=0.8087;RSQ=0.4065;ERATE=0.0031;THETA=0.0030;AC=177;AN=2184 GT:DS:GL:BD 0.08104396 0 1 121450103 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.473;BRSQ=0.629;LDAF=0.7731;AVGPOST=0.8245;RSQ=0.6920;ERATE=0.0021;THETA=0.0048;AC=1798;AN=2184 GT:DS:GL:BD 0.82326007 1 1 121450110 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.432;LDAF=0.0216;AVGPOST=0.9702;RSQ=0.4514;ERATE=0.0024;THETA=0.0084;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 121450355 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.179;LDAF=0.0455;AVGPOST=0.9209;RSQ=0.2295;ERATE=0.0051;THETA=0.0084;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 121450363 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.891;BRSQ=0.217;LDAF=0.0777;AVGPOST=0.8841;RSQ=0.2991;ERATE=0.0063;THETA=0.0040;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 121450371 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.688;BRSQ=0.273;LDAF=0.2483;AVGPOST=0.6955;RSQ=0.3792;ERATE=0.0053;THETA=0.0190;AC=274;AN=2184 GT:DS:GL:BD 0.12545788 0 1 121450383 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.886;BRSQ=0.200;LDAF=0.0745;AVGPOST=0.8896;RSQ=0.3116;ERATE=0.0027;THETA=0.0030;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 121450384 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.715;BRSQ=0.259;LDAF=0.1915;AVGPOST=0.7987;RSQ=0.5087;ERATE=0.0038;THETA=0.0127;AC=244;AN=2184 GT:DS:GL:BD 0.11172161 0 1 121450542 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.700;LDAF=0.0373;AVGPOST=0.9778;RSQ=0.8000;ERATE=0.0004;THETA=0.0108;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 121451939 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.702;BRSQ=0.090;LDAF=0.2250;AVGPOST=0.6758;RSQ=0.2364;ERATE=0.0178;THETA=0.0010;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 121452386 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.652;BRSQ=0.093;LDAF=0.1598;AVGPOST=0.7871;RSQ=0.3661;ERATE=0.0065;THETA=0.0063;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 121452389 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.600;BRSQ=0.118;LDAF=0.2864;AVGPOST=0.6590;RSQ=0.2905;ERATE=0.0137;THETA=0.0162;AC=316;AN=2184 GT:DS:GL:BD 0.14468865 0 1 121452928 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.521;BRSQ=0.208;LDAF=0.3987;AVGPOST=0.6455;RSQ=0.3656;ERATE=0.0047;THETA=0.0079;AC=718;AN=2184 GT:DS:GL:BD 0.32875457 0 1 121452950 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.682;BRSQ=0.192;LDAF=0.2957;AVGPOST=0.6878;RSQ=0.4031;ERATE=0.0153;THETA=0.0174;AC=419;AN=2184 GT:DS:GL:BD 0.19184981 0 1 121452950 . G GA 292 PASS INDEL;BAVGPOST=0.888;BRSQ=0.216;LDAF=0.1141;AVGPOST=0.8263;RSQ=0.3046;ERATE=0.0030;THETA=0.0066;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 121453579 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.556;BRSQ=0.211;LDAF=0.4069;AVGPOST=0.6747;RSQ=0.3904;ERATE=0.0197;THETA=0.0163;AC=686;AN=2184 GT:DS:GL:BD 0.31410256 0 1 121454116 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.551;BRSQ=0.266;LDAF=0.2942;AVGPOST=0.7133;RSQ=0.4350;ERATE=0.0159;THETA=0.0082;AC=381;AN=2184 GT:DS:GL:BD 0.17445055 0 1 121454185 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.620;BRSQ=0.212;LDAF=0.3019;AVGPOST=0.7022;RSQ=0.3430;ERATE=0.0211;THETA=0.0131;AC=381;AN=2184 GT:DS:GL:BD 0.17445055 0 1 121455163 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.787;BRSQ=0.266;LDAF=0.2064;AVGPOST=0.7629;RSQ=0.3775;ERATE=0.0193;THETA=0.0090;AC=211;AN=2184 GT:DS:GL:BD 0.09661172 0 1 121455413 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.839;BRSQ=0.264;LDAF=0.1605;AVGPOST=0.7973;RSQ=0.3500;ERATE=0.0216;THETA=0.0080;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 121455420 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.939;BRSQ=0.269;LDAF=0.0407;AVGPOST=0.9486;RSQ=0.4340;ERATE=0.0044;THETA=0.0141;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 121455427 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.254;LDAF=0.0229;AVGPOST=0.9617;RSQ=0.2613;ERATE=0.0024;THETA=0.0049;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 121455480 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.959;BRSQ=0.204;LDAF=0.0345;AVGPOST=0.9461;RSQ=0.2711;ERATE=0.0033;THETA=0.0089;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 121455491 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.083;LDAF=0.0061;AVGPOST=0.9888;RSQ=0.1791;ERATE=0.0007;THETA=0.0103;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121455497 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.509;BRSQ=0.204;LDAF=0.1956;AVGPOST=0.7432;RSQ=0.3309;ERATE=0.0029;THETA=0.0021;AC=171;AN=2184 GT:DS:GL:BD 0.07829671 0 1 121455502 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.883;BRSQ=0.071;LDAF=0.1128;AVGPOST=0.8070;RSQ=0.1933;ERATE=0.0064;THETA=0.0041;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 121455506 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.517;BRSQ=0.193;LDAF=0.2299;AVGPOST=0.6942;RSQ=0.2942;ERATE=0.0106;THETA=0.0124;AC=191;AN=2184 GT:DS:GL:BD 0.08745421 0 1 121455510 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.895;BRSQ=0.064;LDAF=0.0892;AVGPOST=0.8470;RSQ=0.1973;ERATE=0.0058;THETA=0.0058;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 121457508 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.842;BRSQ=0.170;LDAF=0.1897;AVGPOST=0.7194;RSQ=0.2378;ERATE=0.0172;THETA=0.0089;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 121458021 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.610;BRSQ=0.119;LDAF=0.6936;AVGPOST=0.6688;RSQ=0.3042;ERATE=0.0116;THETA=0.0056;AC=1776;AN=2184 GT:DS:GL:BD 0.81318682 1 1 121458027 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.890;BRSQ=0.213;LDAF=0.0830;AVGPOST=0.8785;RSQ=0.3189;ERATE=0.0033;THETA=0.0115;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 121458049 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.436;BRSQ=0.430;LDAF=0.4453;AVGPOST=0.6606;RSQ=0.4790;ERATE=0.0043;THETA=0.0099;AC=797;AN=2184 GT:DS:GL:BD 0.36492673 0 1 121458063 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.957;BRSQ=0.057;LDAF=0.0381;AVGPOST=0.9311;RSQ=0.1832;ERATE=0.0034;THETA=0.0158;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121458066 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.683;BRSQ=0.039;LDAF=0.2072;AVGPOST=0.6754;RSQ=0.1685;ERATE=0.0194;THETA=0.0061;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 121458382 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.847;BRSQ=0.247;LDAF=0.0702;AVGPOST=0.9240;RSQ=0.5642;ERATE=0.0025;THETA=0.0163;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 121458430 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.880;BRSQ=0.222;LDAF=0.0686;AVGPOST=0.9153;RSQ=0.4511;ERATE=0.0024;THETA=0.0113;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 121459504 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.695;BRSQ=0.120;LDAF=0.2314;AVGPOST=0.6910;RSQ=0.2439;ERATE=0.0173;THETA=0.0067;AC=171;AN=2184 GT:DS:GL:BD 0.07829671 0 1 121459513 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.762;BRSQ=0.147;LDAF=0.2282;AVGPOST=0.6880;RSQ=0.2293;ERATE=0.0228;THETA=0.0165;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 121459527 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.507;BRSQ=0.052;LDAF=0.2862;AVGPOST=0.6407;RSQ=0.2204;ERATE=0.0254;THETA=0.0095;AC=236;AN=2184 GT:DS:GL:BD 0.10805861 0 1 121459940 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.627;BRSQ=0.043;LDAF=0.2325;AVGPOST=0.6451;RSQ=0.1548;ERATE=0.0221;THETA=0.0120;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 121459945 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.650;BRSQ=0.036;LDAF=0.1666;AVGPOST=0.7287;RSQ=0.1765;ERATE=0.0131;THETA=0.0037;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 121460739 . C CA 1419 PASS INDEL;BAVGPOST=0.407;BRSQ=0.041;LDAF=0.6956;AVGPOST=0.5968;RSQ=0.2012;ERATE=0.0149;THETA=0.0083;AC=1869;AN=2184 GT:DS:GL:BD 0.85576922 1 1 121461356 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.935;BRSQ=0.365;LDAF=0.0641;AVGPOST=0.9368;RSQ=0.6107;ERATE=0.0031;THETA=0.0064;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 121461648 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.824;LDAF=0.1052;AVGPOST=0.9641;RSQ=0.8390;ERATE=0.0073;THETA=0.0124;AC=204;AN=2184 GT:DS:GL:BD 0.09340660 0 1 121461666 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.640;LDAF=0.0226;AVGPOST=0.9787;RSQ=0.6361;ERATE=0.0030;THETA=0.0037;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 121461725 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.868;BRSQ=0.402;LDAF=0.1572;AVGPOST=0.8284;RSQ=0.4297;ERATE=0.0234;THETA=0.0040;AC=186;AN=2184 GT:DS:GL:BD 0.08516484 0 1 121461741 . AG A 78 PASS INDEL;BAVGPOST=0.973;BRSQ=0.248;LDAF=0.0478;AVGPOST=0.9204;RSQ=0.2349;ERATE=0.0057;THETA=0.0183;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 121462971 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.781;BRSQ=0.338;LDAF=0.2286;AVGPOST=0.7922;RSQ=0.5412;ERATE=0.0030;THETA=0.0034;AC=336;AN=2184 GT:DS:GL:BD 0.15384616 0 1 121462973 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.885;BRSQ=0.339;LDAF=0.1242;AVGPOST=0.8435;RSQ=0.4004;ERATE=0.0102;THETA=0.0074;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 121462998 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.798;BRSQ=0.318;LDAF=0.2391;AVGPOST=0.7592;RSQ=0.3351;ERATE=0.0327;THETA=0.0130;AC=271;AN=2184 GT:DS:GL:BD 0.12408425 0 1 121464870 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.926;BRSQ=0.579;LDAF=0.0989;AVGPOST=0.9131;RSQ=0.6556;ERATE=0.0013;THETA=0.0022;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 121464887 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.927;BRSQ=0.568;LDAF=0.0950;AVGPOST=0.9109;RSQ=0.6331;ERATE=0.0014;THETA=0.0041;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 121466097 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.409;LDAF=0.0101;AVGPOST=0.9850;RSQ=0.4203;ERATE=0.0018;THETA=0.0100;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121466402 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.842;LDAF=0.0055;AVGPOST=0.9981;RSQ=0.8429;ERATE=0.0005;THETA=0.0117;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121466408 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.736;LDAF=0.0783;AVGPOST=0.9620;RSQ=0.7896;ERATE=0.0032;THETA=0.0184;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 121466425 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.612;LDAF=0.0320;AVGPOST=0.9751;RSQ=0.7026;ERATE=0.0011;THETA=0.0153;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 121466894 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.879;BRSQ=0.181;LDAF=0.0775;AVGPOST=0.8874;RSQ=0.3505;ERATE=0.0017;THETA=0.0093;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 121466909 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.474;BRSQ=0.132;LDAF=0.5484;AVGPOST=0.6500;RSQ=0.4087;ERATE=0.0172;THETA=0.0107;AC=1234;AN=2184 GT:DS:GL:BD 0.56501830 1 1 121466914 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.511;BRSQ=0.176;LDAF=0.5908;AVGPOST=0.6402;RSQ=0.3843;ERATE=0.0163;THETA=0.0164;AC=1361;AN=2184 GT:DS:GL:BD 0.62316847 1 1 121467148 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.727;BRSQ=0.553;LDAF=0.5974;AVGPOST=0.7809;RSQ=0.7196;ERATE=0.0036;THETA=0.0117;AC=1260;AN=2184 GT:DS:GL:BD 0.57692307 1 1 121467155 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.438;LDAF=0.0452;AVGPOST=0.9426;RSQ=0.4658;ERATE=0.0014;THETA=0.0042;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 121467169 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.527;LDAF=0.0096;AVGPOST=0.9830;RSQ=0.2267;ERATE=0.0013;THETA=0.0144;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121467172 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.407;LDAF=0.0030;AVGPOST=0.9951;RSQ=0.2585;ERATE=0.0010;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121467176 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.884;BRSQ=0.624;LDAF=0.1974;AVGPOST=0.8360;RSQ=0.6252;ERATE=0.0056;THETA=0.0109;AC=319;AN=2184 GT:DS:GL:BD 0.14606227 0 1 121467232 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.732;BRSQ=0.574;LDAF=0.5944;AVGPOST=0.7924;RSQ=0.7361;ERATE=0.0012;THETA=0.0070;AC=1288;AN=2184 GT:DS:GL:BD 0.58974361 1 1 121467245 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.883;BRSQ=0.636;LDAF=0.2007;AVGPOST=0.8400;RSQ=0.6392;ERATE=0.0054;THETA=0.0129;AC=326;AN=2184 GT:DS:GL:BD 0.14926741 0 1 121467272 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.490;LDAF=0.0305;AVGPOST=0.9718;RSQ=0.6145;ERATE=0.0008;THETA=0.0072;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 121468053 . G GA 951 PASS INDEL;BAVGPOST=0.387;BRSQ=0.026;LDAF=0.2699;AVGPOST=0.6160;RSQ=0.1799;ERATE=0.0146;THETA=0.0063;AC=184;AN=2184 GT:DS:GL:BD 0.08424909 0 1 121469737 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.455;BRSQ=0.020;LDAF=0.2053;AVGPOST=0.7089;RSQ=0.2575;ERATE=0.0186;THETA=0.0076;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 121470049 . GA G 64 PASS INDEL;BAVGPOST=0.851;BRSQ=0.030;LDAF=0.0729;AVGPOST=0.8718;RSQ=0.2087;ERATE=0.0035;THETA=0.0120;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 121470050 . A AAGG 27 PASS INDEL;BAVGPOST=0.787;BRSQ=0.032;LDAF=0.1655;AVGPOST=0.7215;RSQ=0.1452;ERATE=0.0157;THETA=0.0200;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 121470067 . C CA 864 PASS INDEL;BAVGPOST=0.434;BRSQ=0.022;LDAF=0.8219;AVGPOST=0.7180;RSQ=0.2220;ERATE=0.0068;THETA=0.0214;AC=2073;AN=2184 GT:DS:GL:BD 0.94917583 1 1 121471053 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.777;BRSQ=0.179;LDAF=0.1810;AVGPOST=0.7501;RSQ=0.2873;ERATE=0.0111;THETA=0.0021;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 121472389 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.829;BRSQ=0.491;LDAF=0.1896;AVGPOST=0.8374;RSQ=0.6248;ERATE=0.0036;THETA=0.0037;AC=321;AN=2184 GT:DS:GL:BD 0.14697802 0 1 121472397 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.897;BRSQ=0.519;LDAF=0.1160;AVGPOST=0.9070;RSQ=0.6531;ERATE=0.0087;THETA=0.0096;AC=175;AN=2184 GT:DS:GL:BD 0.08012821 0 1 121472399 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.546;LDAF=0.0256;AVGPOST=0.9804;RSQ=0.6726;ERATE=0.0013;THETA=0.0160;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 121472418 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.600;LDAF=0.0097;AVGPOST=0.9869;RSQ=0.3812;ERATE=0.0016;THETA=0.0016;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121472419 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.666;LDAF=0.0027;AVGPOST=0.9963;RSQ=0.4049;ERATE=0.0007;THETA=0.0284;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121472431 . TC T 27 PASS INDEL;BAVGPOST=0.999;BRSQ=0.458;LDAF=0.0044;AVGPOST=0.9929;RSQ=0.2773;ERATE=0.0009;THETA=0.0112;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121472678 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.931;LDAF=0.0231;AVGPOST=0.9918;RSQ=0.8753;ERATE=0.0004;THETA=0.0085;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 121472689 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.479;LDAF=0.0289;AVGPOST=0.9675;RSQ=0.5608;ERATE=0.0047;THETA=0.0073;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 121472703 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.457;LDAF=0.0061;AVGPOST=0.9934;RSQ=0.5743;ERATE=0.0012;THETA=0.0118;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 121472712 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.951;BRSQ=0.872;LDAF=0.8902;AVGPOST=0.9626;RSQ=0.8879;ERATE=0.0007;THETA=0.0025;AC=1961;AN=2184 GT:DS:GL:BD 0.89789379 1 1 121472859 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.758;LDAF=0.0022;AVGPOST=0.9981;RSQ=0.6049;ERATE=0.0006;THETA=0.0088;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121473293 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.603;LDAF=0.0157;AVGPOST=0.9898;RSQ=0.7371;ERATE=0.0010;THETA=0.0067;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 121473395 . GC G 1059 PASS INDEL;BAVGPOST=0.900;BRSQ=0.373;LDAF=0.1074;AVGPOST=0.8639;RSQ=0.4375;ERATE=0.0022;THETA=0.0025;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 121473519 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.726;BRSQ=0.608;LDAF=0.6497;AVGPOST=0.7932;RSQ=0.7251;ERATE=0.0044;THETA=0.0055;AC=1480;AN=2184 GT:DS:GL:BD 0.67765570 1 1 121473882 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.722;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.3536;ERATE=0.0005;THETA=0.0076;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121473979 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.728;LDAF=0.0148;AVGPOST=0.9903;RSQ=0.7349;ERATE=0.0007;THETA=0.0098;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 121473981 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.644;LDAF=0.0081;AVGPOST=0.9947;RSQ=0.7281;ERATE=0.0010;THETA=0.0030;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 121473984 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.898;BRSQ=0.828;LDAF=0.4811;AVGPOST=0.9066;RSQ=0.8670;ERATE=0.0015;THETA=0.0039;AC=1053;AN=2184 GT:DS:GL:BD 0.48214287 0 1 121473988 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7129;ERATE=0.0005;THETA=0.0148;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121474197 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.869;BRSQ=0.611;LDAF=0.1858;AVGPOST=0.8732;RSQ=0.6922;ERATE=0.0050;THETA=0.0068;AC=335;AN=2184 GT:DS:GL:BD 0.15338828 0 1 121474230 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.663;LDAF=0.0032;AVGPOST=0.9946;RSQ=0.2554;ERATE=0.0007;THETA=0.0041;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121474241 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.6233;ERATE=0.0005;THETA=0.0108;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121474254 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.638;LDAF=0.0215;AVGPOST=0.9895;RSQ=0.8032;ERATE=0.0009;THETA=0.0010;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 121474285 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.959;BRSQ=0.673;LDAF=0.0637;AVGPOST=0.9573;RSQ=0.7092;ERATE=0.0113;THETA=0.0042;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 121474299 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.615;LDAF=0.0305;AVGPOST=0.9721;RSQ=0.6443;ERATE=0.0042;THETA=0.0027;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 121474393 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.782;LDAF=0.0379;AVGPOST=0.9913;RSQ=0.9210;ERATE=0.0004;THETA=0.0098;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 121474394 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.613;LDAF=0.0025;AVGPOST=0.9978;RSQ=0.6247;ERATE=0.0010;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121474414 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.540;LDAF=0.0337;AVGPOST=0.9667;RSQ=0.6042;ERATE=0.0048;THETA=0.0043;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 121474415 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.709;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.5129;ERATE=0.0004;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121474427 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.373;LDAF=0.0045;AVGPOST=0.9934;RSQ=0.4259;ERATE=0.0009;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121474440 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.879;LDAF=0.1480;AVGPOST=0.9643;RSQ=0.8800;ERATE=0.0014;THETA=0.0048;AC=304;AN=2184 GT:DS:GL:BD 0.13919415 0 1 121474446 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6620;ERATE=0.0004;THETA=0.0046;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121474466 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.738;LDAF=0.0062;AVGPOST=0.9960;RSQ=0.7584;ERATE=0.0009;THETA=0.0025;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121474548 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.842;LDAF=0.0052;AVGPOST=0.9980;RSQ=0.8480;ERATE=0.0004;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 121474553 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.720;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6458;ERATE=0.0004;THETA=0.0085;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121474565 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.693;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5877;ERATE=0.0003;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121474599 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.505;LDAF=0.0355;AVGPOST=0.9614;RSQ=0.5474;ERATE=0.0050;THETA=0.0026;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 121474608 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.720;LDAF=0.0021;AVGPOST=0.9976;RSQ=0.4627;ERATE=0.0006;THETA=0.0039;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121474609 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.639;LDAF=0.0116;AVGPOST=0.9907;RSQ=0.6647;ERATE=0.0014;THETA=0.0090;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 121474643 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.702;LDAF=0.0126;AVGPOST=0.9917;RSQ=0.7451;ERATE=0.0010;THETA=0.0041;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 121474741 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.879;BRSQ=0.685;LDAF=0.8426;AVGPOST=0.9060;RSQ=0.7696;ERATE=0.0031;THETA=0.0049;AC=1885;AN=2184 GT:DS:GL:BD 0.86309522 1 1 121474881 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0064;AVGPOST=0.9990;RSQ=0.9311;ERATE=0.0004;THETA=0.0098;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 121474910 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9426;ERATE=0.0003;THETA=0.0042;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121474929 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7795;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121474961 . CA C 375 PASS INDEL;BAVGPOST=0.986;BRSQ=0.649;LDAF=0.0234;AVGPOST=0.9814;RSQ=0.6858;ERATE=0.0014;THETA=0.0049;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 121474963 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.890;BRSQ=0.652;LDAF=0.1940;AVGPOST=0.8957;RSQ=0.7216;ERATE=0.0098;THETA=0.0032;AC=364;AN=2184 GT:DS:GL:BD 0.16666667 0 1 121474976 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.931;BRSQ=0.796;LDAF=0.8552;AVGPOST=0.9394;RSQ=0.8378;ERATE=0.0027;THETA=0.0015;AC=1893;AN=2184 GT:DS:GL:BD 0.86675823 1 1 121474993 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.677;LDAF=0.0031;AVGPOST=0.9971;RSQ=0.5830;ERATE=0.0016;THETA=0.0019;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121474999 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.744;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0004;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121475008 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.935;BRSQ=0.754;LDAF=0.1570;AVGPOST=0.9295;RSQ=0.7672;ERATE=0.0143;THETA=0.0037;AC=307;AN=2184 GT:DS:GL:BD 0.14056776 0 1 121475010 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.756;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5869;ERATE=0.0004;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121475016 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8720;ERATE=0.0004;THETA=0.0033;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121475450 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7655;ERATE=0.0004;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121475464 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.737;LDAF=0.0192;AVGPOST=0.9881;RSQ=0.7667;ERATE=0.0008;THETA=0.0049;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 121475471 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.566;LDAF=0.0004;AVGPOST=0.9995;RSQ=0.5372;ERATE=0.0003;THETA=0.0017;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 121475604 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.915;BRSQ=0.724;LDAF=0.1365;AVGPOST=0.9164;RSQ=0.7616;ERATE=0.0042;THETA=0.0018;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 121475621 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.746;LDAF=0.0037;AVGPOST=0.9983;RSQ=0.8016;ERATE=0.0008;THETA=0.0021;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121475768 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0071;AVGPOST=0.9983;RSQ=0.8858;ERATE=0.0005;THETA=0.0029;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 121475772 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.615;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4209;ERATE=0.0006;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121475783 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.700;LDAF=0.0328;AVGPOST=0.9749;RSQ=0.6947;ERATE=0.0075;THETA=0.0060;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 121475790 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7871;ERATE=0.0004;THETA=0.0031;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121475791 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.892;LDAF=0.0283;AVGPOST=0.9929;RSQ=0.9103;ERATE=0.0009;THETA=0.0017;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 121475793 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.630;LDAF=0.0041;AVGPOST=0.9957;RSQ=0.5959;ERATE=0.0012;THETA=0.0017;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121475798 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6082;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121475855 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.832;LDAF=0.0202;AVGPOST=0.9905;RSQ=0.8242;ERATE=0.0004;THETA=0.0038;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 121475858 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.756;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5951;ERATE=0.0004;THETA=0.0049;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121475865 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121475875 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.912;LDAF=0.0092;AVGPOST=0.9979;RSQ=0.9230;ERATE=0.0004;THETA=0.0039;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 121475883 . AG A 168 PASS INDEL;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0030;AVGPOST=0.9984;RSQ=0.7424;ERATE=0.0005;THETA=0.0020;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121475889 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.688;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5699;ERATE=0.0005;THETA=0.0041;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121476107 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.884;LDAF=0.0270;AVGPOST=0.9932;RSQ=0.9072;ERATE=0.0004;THETA=0.0020;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 121476144 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7527;ERATE=0.0007;THETA=0.0027;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121476156 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121476179 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6495;ERATE=0.0005;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121476192 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.707;LDAF=0.0029;AVGPOST=0.9965;RSQ=0.5578;ERATE=0.0006;THETA=0.0034;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121476193 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7000;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121476224 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.723;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4609;ERATE=0.0004;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121476234 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0025;AVGPOST=0.9991;RSQ=0.8493;ERATE=0.0004;THETA=0.0022;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121476236 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.941;BRSQ=0.850;LDAF=0.8838;AVGPOST=0.9599;RSQ=0.8862;ERATE=0.0004;THETA=0.0035;AC=1948;AN=2184 GT:DS:GL:BD 0.89194137 1 1 121476252 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.784;LDAF=0.0059;AVGPOST=0.9947;RSQ=0.6769;ERATE=0.0006;THETA=0.0019;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121476254 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.414;LDAF=0.0058;AVGPOST=0.9939;RSQ=0.5660;ERATE=0.0007;THETA=0.0035;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 121476268 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.538;LDAF=0.0022;AVGPOST=0.9965;RSQ=0.2791;ERATE=0.0010;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121476453 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.898;BRSQ=0.184;LDAF=0.0680;AVGPOST=0.8958;RSQ=0.3021;ERATE=0.0034;THETA=0.0035;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 121476456 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.268;LDAF=0.0040;AVGPOST=0.9934;RSQ=0.2467;ERATE=0.0006;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121476556 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.923;BRSQ=0.859;LDAF=0.2877;AVGPOST=0.9102;RSQ=0.8523;ERATE=0.0024;THETA=0.0038;AC=581;AN=2184 GT:DS:GL:BD 0.26602563 0 1 121476608 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.852;BRSQ=0.755;LDAF=0.4523;AVGPOST=0.8528;RSQ=0.8049;ERATE=0.0026;THETA=0.0038;AC=1014;AN=2184 GT:DS:GL:BD 0.46428570 0 1 121476845 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.599;LDAF=0.0038;AVGPOST=0.9946;RSQ=0.3678;ERATE=0.0011;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121476846 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.873;BRSQ=0.785;LDAF=0.5182;AVGPOST=0.8758;RSQ=0.8313;ERATE=0.0070;THETA=0.0035;AC=1160;AN=2184 GT:DS:GL:BD 0.53113556 1 1 121476856 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.5458;ERATE=0.0011;THETA=0.0034;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121476888 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.618;LDAF=0.0038;AVGPOST=0.9946;RSQ=0.3571;ERATE=0.0011;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121476895 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.702;LDAF=0.0030;AVGPOST=0.9968;RSQ=0.5133;ERATE=0.0006;THETA=0.0019;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121476922 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4443;ERATE=0.0004;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121476948 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.743;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.5486;ERATE=0.0007;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121476949 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.803;LDAF=0.0067;AVGPOST=0.9950;RSQ=0.7226;ERATE=0.0005;THETA=0.0027;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 121476950 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.928;BRSQ=0.871;LDAF=0.2736;AVGPOST=0.9385;RSQ=0.8994;ERATE=0.0010;THETA=0.0043;AC=567;AN=2184 GT:DS:GL:BD 0.25961539 0 1 121477270 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.524;LDAF=0.0031;AVGPOST=0.9946;RSQ=0.2483;ERATE=0.0007;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121477287 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.750;LDAF=0.0027;AVGPOST=0.9983;RSQ=0.7035;ERATE=0.0005;THETA=0.0043;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121477289 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.652;LDAF=0.0025;AVGPOST=0.9976;RSQ=0.5697;ERATE=0.0005;THETA=0.0031;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 121477320 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.942;LDAF=0.0224;AVGPOST=0.9919;RSQ=0.8734;ERATE=0.0004;THETA=0.0040;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 121477345 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.865;LDAF=0.1050;AVGPOST=0.9673;RSQ=0.8661;ERATE=0.0007;THETA=0.0020;AC=210;AN=2184 GT:DS:GL:BD 0.09615385 0 1 121477642 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.669;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6602;ERATE=0.0004;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121477665 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.613;LDAF=0.0026;AVGPOST=0.9981;RSQ=0.6818;ERATE=0.0005;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121477667 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.865;LDAF=0.1055;AVGPOST=0.9652;RSQ=0.8600;ERATE=0.0009;THETA=0.0024;AC=210;AN=2184 GT:DS:GL:BD 0.09615385 0 1 121477799 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.909;BRSQ=0.856;LDAF=0.5874;AVGPOST=0.8988;RSQ=0.8580;ERATE=0.0020;THETA=0.0072;AC=1288;AN=2184 GT:DS:GL:BD 0.58974361 1 1 121477812 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.423;LDAF=0.0099;AVGPOST=0.9833;RSQ=0.3083;ERATE=0.0011;THETA=0.0044;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 121477834 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0019;AVGPOST=0.9970;RSQ=0.3439;ERATE=0.0007;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121478115 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.478;LDAF=0.0036;AVGPOST=0.9957;RSQ=0.5147;ERATE=0.0007;THETA=0.0104;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121478209 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.871;BRSQ=0.718;LDAF=0.2361;AVGPOST=0.8787;RSQ=0.7919;ERATE=0.0013;THETA=0.0027;AC=449;AN=2184 GT:DS:GL:BD 0.20558608 0 1 121478212 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.319;LDAF=0.0138;AVGPOST=0.9802;RSQ=0.4591;ERATE=0.0005;THETA=0.0120;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121478213 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.436;LDAF=0.0077;AVGPOST=0.9887;RSQ=0.3400;ERATE=0.0015;THETA=0.0037;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 121478232 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.598;LDAF=0.0228;AVGPOST=0.9743;RSQ=0.5496;ERATE=0.0008;THETA=0.0064;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 121478234 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.602;LDAF=0.0027;AVGPOST=0.9957;RSQ=0.2444;ERATE=0.0008;THETA=0.0076;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121478243 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.506;LDAF=0.0029;AVGPOST=0.9960;RSQ=0.3808;ERATE=0.0009;THETA=0.0103;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121478256 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.938;LDAF=0.0268;AVGPOST=0.9860;RSQ=0.7983;ERATE=0.0006;THETA=0.0036;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 121478272 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.780;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.6825;ERATE=0.0004;THETA=0.0063;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121478285 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.528;LDAF=0.0089;AVGPOST=0.9901;RSQ=0.4991;ERATE=0.0009;THETA=0.0039;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 121478294 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.512;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4367;ERATE=0.0005;THETA=0.0076;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121478299 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.650;LDAF=0.0033;AVGPOST=0.9967;RSQ=0.5358;ERATE=0.0007;THETA=0.0159;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 121478307 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6335;ERATE=0.0005;THETA=0.0029;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 121478309 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.479;LDAF=0.0020;AVGPOST=0.9968;RSQ=0.3541;ERATE=0.0006;THETA=0.0065;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121480623 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.749;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6602;ERATE=0.0004;THETA=0.0152;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121480718 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5672;ERATE=0.0004;THETA=0.0149;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 121480741 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.816;LDAF=0.0399;AVGPOST=0.9903;RSQ=0.9027;ERATE=0.0007;THETA=0.0378;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 121481132 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.923;BRSQ=0.835;LDAF=0.4021;AVGPOST=0.9143;RSQ=0.8442;ERATE=0.0014;THETA=0.0371;AC=880;AN=2184 GT:DS:GL:BD 0.40293041 0 1 142544330 . A AT 803 PASS INDEL;BAVGPOST=0.963;BRSQ=0.579;LDAF=0.0594;AVGPOST=0.9419;RSQ=0.5424;ERATE=0.0140;THETA=0.0147;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 142545135 . CTT C 94 PASS INDEL;BAVGPOST=0.996;BRSQ=0.176;LDAF=0.0355;AVGPOST=0.9324;RSQ=0.1542;ERATE=0.0034;THETA=0.0146;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 142545956 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.792;LDAF=0.0663;AVGPOST=0.9762;RSQ=0.8489;ERATE=0.0041;THETA=0.0271;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 142547580 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.734;LDAF=0.0105;AVGPOST=0.9951;RSQ=0.7983;ERATE=0.0006;THETA=0.0232;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 142547584 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.469;LDAF=0.0335;AVGPOST=0.9615;RSQ=0.5302;ERATE=0.0040;THETA=0.0160;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 142547824 . AT A 26 PASS INDEL;BAVGPOST=0.978;BRSQ=0.038;LDAF=0.0580;AVGPOST=0.8895;RSQ=0.1168;ERATE=0.0054;THETA=0.0291;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 142548064 . TC T 93 PASS INDEL;BAVGPOST=0.926;BRSQ=0.111;LDAF=0.0804;AVGPOST=0.8569;RSQ=0.1682;ERATE=0.0098;THETA=0.0219;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 142548387 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0342;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142548498 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.660;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0004;THETA=0.0148;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142548690 . G GT 233 PASS INDEL;BAVGPOST=0.992;BRSQ=0.103;LDAF=0.0309;AVGPOST=0.9406;RSQ=0.1078;ERATE=0.0030;THETA=0.0269;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142548792 . ATT A 23 PASS INDEL;BAVGPOST=0.982;BRSQ=0.048;LDAF=0.0427;AVGPOST=0.9183;RSQ=0.1000;ERATE=0.0028;THETA=0.0114;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142549773 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5993;ERATE=0.0004;THETA=0.0238;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142549819 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.427;LDAF=0.0033;AVGPOST=0.9950;RSQ=0.4095;ERATE=0.0012;THETA=0.0043;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142550745 . TG T 51 PASS INDEL;BAVGPOST=0.952;BRSQ=0.084;LDAF=0.0237;AVGPOST=0.9593;RSQ=0.2677;ERATE=0.0018;THETA=0.0125;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 142551257 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.940;BRSQ=0.691;LDAF=0.8976;AVGPOST=0.9356;RSQ=0.7462;ERATE=0.0025;THETA=0.0345;AC=1999;AN=2184 GT:DS:GL:BD 0.91529304 1 1 142552743 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.735;LDAF=0.0156;AVGPOST=0.9897;RSQ=0.7218;ERATE=0.0018;THETA=0.0250;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 142555584 . TA T 6 PASS INDEL;BAVGPOST=0.994;BRSQ=0.205;LDAF=0.0182;AVGPOST=0.9659;RSQ=0.1669;ERATE=0.0018;THETA=0.0227;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142556151 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5854;ERATE=0.0004;THETA=0.0410;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142556371 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.672;LDAF=0.0078;AVGPOST=0.9954;RSQ=0.7707;ERATE=0.0008;THETA=0.0198;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 142557235 . A AT 1097 PASS INDEL;BAVGPOST=0.623;BRSQ=0.080;LDAF=0.2311;AVGPOST=0.6686;RSQ=0.1821;ERATE=0.0221;THETA=0.0053;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 142557684 . A AC 261 PASS INDEL;BAVGPOST=0.971;BRSQ=0.443;LDAF=0.0259;AVGPOST=0.9754;RSQ=0.6267;ERATE=0.0006;THETA=0.0161;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 142557970 . CCTT C 254 PASS INDEL;BAVGPOST=0.972;BRSQ=0.251;LDAF=0.0415;AVGPOST=0.9290;RSQ=0.2014;ERATE=0.0084;THETA=0.0130;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 142558125 . CA C 772 PASS INDEL;BAVGPOST=0.949;BRSQ=0.163;LDAF=0.0783;AVGPOST=0.8626;RSQ=0.1609;ERATE=0.0061;THETA=0.0207;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 142558811 . G GT 4050 PASS INDEL;BAVGPOST=0.580;BRSQ=0.163;LDAF=0.3161;AVGPOST=0.6298;RSQ=0.2627;ERATE=0.0172;THETA=0.0311;AC=287;AN=2184 GT:DS:GL:BD 0.13141026 0 1 142558915 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.774;LDAF=0.0057;AVGPOST=0.9965;RSQ=0.7734;ERATE=0.0011;THETA=0.0190;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 142559366 . TG T 3064 PASS INDEL;BAVGPOST=0.831;BRSQ=0.366;LDAF=0.1870;AVGPOST=0.8141;RSQ=0.4293;ERATE=0.0198;THETA=0.0218;AC=204;AN=2184 GT:DS:GL:BD 0.09340660 0 1 142560163 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6027;ERATE=0.0005;THETA=0.0055;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142560186 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6983;ERATE=0.0004;THETA=0.0317;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142560220 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.763;LDAF=0.0025;AVGPOST=0.9991;RSQ=0.8437;ERATE=0.0012;THETA=0.0189;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 142560269 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.655;LDAF=0.0067;AVGPOST=0.9958;RSQ=0.7294;ERATE=0.0014;THETA=0.0038;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 142560513 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5378;ERATE=0.0004;THETA=0.0189;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142561009 . G GA 518 PASS INDEL;BAVGPOST=0.872;BRSQ=0.328;LDAF=0.1056;AVGPOST=0.8806;RSQ=0.4780;ERATE=0.0125;THETA=0.0114;AC=135;AN=2184 GT:DS:GL:BD 0.06181319 0 1 142562347 . GA G 1734 PASS INDEL;BAVGPOST=0.936;BRSQ=0.521;LDAF=0.0902;AVGPOST=0.9089;RSQ=0.5021;ERATE=0.0158;THETA=0.0162;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 142562823 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.818;LDAF=0.0226;AVGPOST=0.9925;RSQ=0.8606;ERATE=0.0004;THETA=0.0064;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 142564434 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.915;BRSQ=0.860;LDAF=0.5115;AVGPOST=0.9108;RSQ=0.8746;ERATE=0.0005;THETA=0.0011;AC=1104;AN=2184 GT:DS:GL:BD 0.50549453 1 1 142564435 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.915;BRSQ=0.860;LDAF=0.5110;AVGPOST=0.9100;RSQ=0.8736;ERATE=0.0008;THETA=0.0129;AC=1103;AN=2184 GT:DS:GL:BD 0.50503665 1 1 142564648 . AG A 710 PASS INDEL;BAVGPOST=0.940;BRSQ=0.463;LDAF=0.0729;AVGPOST=0.9211;RSQ=0.5033;ERATE=0.0098;THETA=0.0175;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 142565398 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.899;BRSQ=0.645;LDAF=0.8527;AVGPOST=0.8960;RSQ=0.7076;ERATE=0.0063;THETA=0.0169;AC=1902;AN=2184 GT:DS:GL:BD 0.87087911 1 1 142565652 . G GAA 800 PASS INDEL;BAVGPOST=0.975;BRSQ=0.417;LDAF=0.0303;AVGPOST=0.9597;RSQ=0.3795;ERATE=0.0053;THETA=0.0318;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 142565708 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.800;BRSQ=0.678;LDAF=0.2899;AVGPOST=0.8218;RSQ=0.7211;ERATE=0.0023;THETA=0.0073;AC=619;AN=2184 GT:DS:GL:BD 0.28342491 0 1 142565711 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.666;LDAF=0.0206;AVGPOST=0.9791;RSQ=0.5636;ERATE=0.0011;THETA=0.0062;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 142565731 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.784;BRSQ=0.590;LDAF=0.2591;AVGPOST=0.8166;RSQ=0.6876;ERATE=0.0045;THETA=0.0076;AC=547;AN=2184 GT:DS:GL:BD 0.25045788 0 1 142565743 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.556;LDAF=0.0051;AVGPOST=0.9916;RSQ=0.2686;ERATE=0.0015;THETA=0.0161;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142565746 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.752;BRSQ=0.326;LDAF=0.1799;AVGPOST=0.8289;RSQ=0.5986;ERATE=0.0020;THETA=0.0089;AC=329;AN=2184 GT:DS:GL:BD 0.15064102 0 1 142565759 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.755;BRSQ=0.597;LDAF=0.2895;AVGPOST=0.7967;RSQ=0.6741;ERATE=0.0032;THETA=0.0130;AC=595;AN=2184 GT:DS:GL:BD 0.27243590 0 1 142566127 . CAT C 12036 PASS INDEL;BAVGPOST=0.906;BRSQ=0.643;LDAF=0.1695;AVGPOST=0.9109;RSQ=0.7029;ERATE=0.0176;THETA=0.0272;AC=276;AN=2184 GT:DS:GL:BD 0.12637363 0 1 142567109 . TAC T 1961 PASS INDEL;BAVGPOST=0.918;BRSQ=0.546;LDAF=0.1240;AVGPOST=0.8938;RSQ=0.5742;ERATE=0.0201;THETA=0.0038;AC=161;AN=2184 GT:DS:GL:BD 0.07371795 0 1 142569422 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0197;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142569870 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6392;ERATE=0.0004;THETA=0.0179;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142569885 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.750;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.6780;ERATE=0.0005;THETA=0.0134;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 142569893 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.830;LDAF=0.0166;AVGPOST=0.9932;RSQ=0.8337;ERATE=0.0008;THETA=0.0176;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 142570245 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.754;LDAF=0.9769;AVGPOST=0.9870;RSQ=0.7835;ERATE=0.0005;THETA=0.0147;AC=2143;AN=2184 GT:DS:GL:BD 0.98122710 1 1 142571198 . A AC 358 PASS INDEL;BAVGPOST=0.967;BRSQ=0.341;LDAF=0.0422;AVGPOST=0.9358;RSQ=0.3000;ERATE=0.0072;THETA=0.0054;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 142571242 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.867;BRSQ=0.765;LDAF=0.5026;AVGPOST=0.8181;RSQ=0.7187;ERATE=0.0115;THETA=0.0131;AC=1135;AN=2184 GT:DS:GL:BD 0.51968867 1 1 142572114 . CA C 26 PASS INDEL;BAVGPOST=0.995;BRSQ=0.155;LDAF=0.0116;AVGPOST=0.9780;RSQ=0.1660;ERATE=0.0008;THETA=0.0075;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142575329 . CACTT C 74 PASS INDEL;BAVGPOST=0.943;BRSQ=0.042;LDAF=0.0171;AVGPOST=0.9691;RSQ=0.1609;ERATE=0.0019;THETA=0.0254;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 142575785 . AC A 44 PASS INDEL;BAVGPOST=0.986;BRSQ=0.059;LDAF=0.0497;AVGPOST=0.9055;RSQ=0.1280;ERATE=0.0025;THETA=0.0087;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142577204 . AC A 124 PASS INDEL;BAVGPOST=0.997;BRSQ=0.225;LDAF=0.0667;AVGPOST=0.8734;RSQ=0.1194;ERATE=0.0022;THETA=0.0300;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 142577732 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.748;LDAF=0.0016;AVGPOST=0.9983;RSQ=0.5588;ERATE=0.0006;THETA=0.0058;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142577752 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7403;ERATE=0.0005;THETA=0.0118;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142577779 . CTG C 318 PASS INDEL;BAVGPOST=0.980;BRSQ=0.115;LDAF=0.0271;AVGPOST=0.9494;RSQ=0.1397;ERATE=0.0021;THETA=0.0266;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 142577972 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.827;LDAF=0.0059;AVGPOST=0.9974;RSQ=0.8136;ERATE=0.0010;THETA=0.0127;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 142578055 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.889;BRSQ=0.620;LDAF=0.2114;AVGPOST=0.8924;RSQ=0.6892;ERATE=0.0243;THETA=0.0113;AC=385;AN=2184 GT:DS:GL:BD 0.17628205 0 1 142578940 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.958;BRSQ=0.584;LDAF=0.0456;AVGPOST=0.9670;RSQ=0.6925;ERATE=0.0052;THETA=0.0075;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 142578958 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.600;LDAF=0.0017;AVGPOST=0.9982;RSQ=0.5281;ERATE=0.0007;THETA=0.0111;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142579000 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0026;AVGPOST=0.9985;RSQ=0.7754;ERATE=0.0005;THETA=0.0226;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 142579951 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.932;BRSQ=0.630;LDAF=0.9295;AVGPOST=0.9562;RSQ=0.7723;ERATE=0.0015;THETA=0.0042;AC=2058;AN=2184 GT:DS:GL:BD 0.94230771 1 1 142579952 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.813;LDAF=0.0168;AVGPOST=0.9920;RSQ=0.7967;ERATE=0.0009;THETA=0.0036;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 142581216 . GA G 344 PASS INDEL;BAVGPOST=0.961;BRSQ=0.230;LDAF=0.0293;AVGPOST=0.9579;RSQ=0.4261;ERATE=0.0015;THETA=0.0082;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 142581435 . CA C 412 PASS INDEL;BAVGPOST=0.852;BRSQ=0.197;LDAF=0.1340;AVGPOST=0.7963;RSQ=0.2474;ERATE=0.0161;THETA=0.0158;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 142581797 . CT C 164 PASS INDEL;BAVGPOST=0.948;BRSQ=0.415;LDAF=0.0574;AVGPOST=0.9278;RSQ=0.4362;ERATE=0.0114;THETA=0.0062;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 142581803 . T TC 168 PASS INDEL;BAVGPOST=0.984;BRSQ=0.583;LDAF=0.0257;AVGPOST=0.9722;RSQ=0.5133;ERATE=0.0080;THETA=0.0217;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 142582433 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.742;BRSQ=0.360;LDAF=0.4221;AVGPOST=0.7798;RSQ=0.4376;ERATE=0.0322;THETA=0.0105;AC=797;AN=2184 GT:DS:GL:BD 0.36492673 0 1 142582626 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.921;BRSQ=0.735;LDAF=0.2068;AVGPOST=0.9190;RSQ=0.7672;ERATE=0.0069;THETA=0.0082;AC=399;AN=2184 GT:DS:GL:BD 0.18269230 0 1 142582641 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6196;ERATE=0.0004;THETA=0.0107;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142583107 . T TA 481 PASS INDEL;BAVGPOST=0.974;BRSQ=0.491;LDAF=0.0306;AVGPOST=0.9651;RSQ=0.4872;ERATE=0.0073;THETA=0.0014;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 142583242 . AC A 18038 PASS INDEL;BAVGPOST=0.865;BRSQ=0.507;LDAF=0.2693;AVGPOST=0.8735;RSQ=0.6382;ERATE=0.0268;THETA=0.0067;AC=466;AN=2184 GT:DS:GL:BD 0.21336997 0 1 142583518 . T TAA 332 PASS INDEL;BAVGPOST=0.977;BRSQ=0.124;LDAF=0.1236;AVGPOST=0.7822;RSQ=0.1826;ERATE=0.0050;THETA=0.0061;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 142584624 . ATT A 41 PASS INDEL;BAVGPOST=0.984;BRSQ=0.142;LDAF=0.0158;AVGPOST=0.9715;RSQ=0.1684;ERATE=0.0016;THETA=0.0175;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 142584780 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0132;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142584786 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.806;LDAF=0.0051;AVGPOST=0.9978;RSQ=0.8219;ERATE=0.0004;THETA=0.0101;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 142588380 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.675;LDAF=0.0207;AVGPOST=0.9868;RSQ=0.7448;ERATE=0.0005;THETA=0.0044;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 142588723 . CA C 58 PASS INDEL;BAVGPOST=0.987;BRSQ=0.167;LDAF=0.0656;AVGPOST=0.8803;RSQ=0.1621;ERATE=0.0034;THETA=0.0138;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 142589385 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.586;LDAF=0.0034;AVGPOST=0.9972;RSQ=0.6380;ERATE=0.0008;THETA=0.0086;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 142589456 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0004;THETA=0.0189;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142589624 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.541;LDAF=0.0303;AVGPOST=0.9793;RSQ=0.6917;ERATE=0.0006;THETA=0.0204;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 142589664 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.740;LDAF=0.0790;AVGPOST=0.9579;RSQ=0.7741;ERATE=0.0009;THETA=0.0080;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 142589815 . G GA 7186 PASS INDEL;BAVGPOST=0.971;BRSQ=0.848;LDAF=0.1251;AVGPOST=0.9663;RSQ=0.8540;ERATE=0.0375;THETA=0.0171;AC=257;AN=2184 GT:DS:GL:BD 0.11767399 0 1 142589959 . CTTA C 60 PASS INDEL;BAVGPOST=0.994;BRSQ=0.477;LDAF=0.0160;AVGPOST=0.9750;RSQ=0.3270;ERATE=0.0025;THETA=0.0085;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 142590087 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7490;ERATE=0.0004;THETA=0.0076;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 142592472 . CA C 121 PASS INDEL;BAVGPOST=0.915;BRSQ=0.248;LDAF=0.0659;AVGPOST=0.9022;RSQ=0.3695;ERATE=0.0020;THETA=0.0063;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 142592473 . AC A 5229 PASS INDEL;BAVGPOST=0.751;BRSQ=0.412;LDAF=0.2392;AVGPOST=0.7871;RSQ=0.5666;ERATE=0.0108;THETA=0.0098;AC=357;AN=2184 GT:DS:GL:BD 0.16346154 0 1 142592478 . CA C 256 PASS INDEL;BAVGPOST=0.895;BRSQ=0.327;LDAF=0.0747;AVGPOST=0.9069;RSQ=0.4732;ERATE=0.0008;THETA=0.0082;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 142592497 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.737;LDAF=0.0029;AVGPOST=0.9978;RSQ=0.6731;ERATE=0.0010;THETA=0.0092;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 142593399 . CAA C 271 PASS INDEL;BAVGPOST=0.940;BRSQ=0.132;LDAF=0.1410;AVGPOST=0.7681;RSQ=0.1965;ERATE=0.0098;THETA=0.0098;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 142597358 . TC T 191 PASS INDEL;BAVGPOST=0.980;BRSQ=0.434;LDAF=0.0221;AVGPOST=0.9744;RSQ=0.5172;ERATE=0.0017;THETA=0.0277;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 142598092 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.929;LDAF=0.1493;AVGPOST=0.9763;RSQ=0.9150;ERATE=0.0005;THETA=0.0083;AC=314;AN=2184 GT:DS:GL:BD 0.14377290 0 1 142599212 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.765;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8313;ERATE=0.0004;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142600182 . TG T 30 PASS INDEL;BAVGPOST=0.998;BRSQ=0.288;LDAF=0.0134;AVGPOST=0.9766;RSQ=0.2247;ERATE=0.0019;THETA=0.0093;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 142600372 . T TC 82 PASS INDEL;BAVGPOST=0.994;BRSQ=0.234;LDAF=0.0738;AVGPOST=0.8638;RSQ=0.1675;ERATE=0.0025;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 142600699 . GT G 102 PASS INDEL;BAVGPOST=0.991;BRSQ=0.092;LDAF=0.0875;AVGPOST=0.8406;RSQ=0.1439;ERATE=0.0022;THETA=0.0070;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 142600745 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0110;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142600814 . AG A 9 PASS INDEL;BAVGPOST=0.956;BRSQ=0.085;LDAF=0.0854;AVGPOST=0.8537;RSQ=0.2090;ERATE=0.0069;THETA=0.0016;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 142601973 . G GA 759 PASS INDEL;BAVGPOST=0.923;BRSQ=0.155;LDAF=0.1517;AVGPOST=0.7576;RSQ=0.2005;ERATE=0.0140;THETA=0.0065;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 142602808 . T TG 493 PASS INDEL;BAVGPOST=0.981;BRSQ=0.661;LDAF=0.0341;AVGPOST=0.9713;RSQ=0.6283;ERATE=0.0139;THETA=0.0070;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 142603483 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.679;LDAF=0.0346;AVGPOST=0.9804;RSQ=0.7814;ERATE=0.0005;THETA=0.0055;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 142605819 . G GA 266 PASS INDEL;BAVGPOST=0.981;BRSQ=0.158;LDAF=0.0518;AVGPOST=0.9074;RSQ=0.2118;ERATE=0.0022;THETA=0.0078;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 142607147 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9571;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142607473 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.714;LDAF=0.0032;AVGPOST=0.9979;RSQ=0.7278;ERATE=0.0008;THETA=0.0017;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 142609073 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.7307;ERATE=0.0015;THETA=0.0028;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 142610254 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.850;BRSQ=0.685;LDAF=0.6454;AVGPOST=0.8264;RSQ=0.6738;ERATE=0.0061;THETA=0.0056;AC=1402;AN=2184 GT:DS:GL:BD 0.64194137 1 1 142610271 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.676;LDAF=0.0098;AVGPOST=0.9931;RSQ=0.6974;ERATE=0.0011;THETA=0.0076;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 142612809 . T TAC 2026 PASS INDEL;BAVGPOST=0.965;BRSQ=0.450;LDAF=0.0255;AVGPOST=0.9734;RSQ=0.5424;ERATE=0.0006;THETA=0.0123;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 142612820 . G GT 832 PASS INDEL;BAVGPOST=0.961;BRSQ=0.208;LDAF=0.1038;AVGPOST=0.8200;RSQ=0.1857;ERATE=0.0053;THETA=0.0048;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 142616197 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.655;LDAF=0.0038;AVGPOST=0.9966;RSQ=0.6239;ERATE=0.0027;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 142617237 . C CA 311 PASS INDEL;BAVGPOST=0.985;BRSQ=0.292;LDAF=0.0554;AVGPOST=0.9023;RSQ=0.2090;ERATE=0.0035;THETA=0.0060;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 142618304 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0022;AVGPOST=0.9989;RSQ=0.7719;ERATE=0.0004;THETA=0.0028;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 142619169 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.623;LDAF=0.9785;AVGPOST=0.9834;RSQ=0.6921;ERATE=0.0007;THETA=0.0033;AC=2150;AN=2184 GT:DS:GL:BD 0.98443222 1 1 142620249 . T TA 51 PASS INDEL;BAVGPOST=0.991;BRSQ=0.288;LDAF=0.0093;AVGPOST=0.9849;RSQ=0.3489;ERATE=0.0010;THETA=0.0027;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 142620766 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0004;THETA=0.0063;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142621998 . TAG T 128 PASS INDEL;BAVGPOST=0.995;BRSQ=0.164;LDAF=0.0147;AVGPOST=0.9735;RSQ=0.2449;ERATE=0.0013;THETA=0.0076;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 142622076 . AC A 187 PASS INDEL;BAVGPOST=0.984;BRSQ=0.182;LDAF=0.0462;AVGPOST=0.9215;RSQ=0.2557;ERATE=0.0044;THETA=0.0044;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 142622200 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9165;ERATE=0.0003;THETA=0.0109;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142622369 . AG A 742 PASS INDEL;BAVGPOST=0.968;BRSQ=0.178;LDAF=0.0461;AVGPOST=0.9200;RSQ=0.2111;ERATE=0.0033;THETA=0.0014;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 142623568 . ACT A 78 PASS INDEL;BAVGPOST=0.999;BRSQ=0.435;LDAF=0.0067;AVGPOST=0.9876;RSQ=0.1491;ERATE=0.0009;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142625080 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.716;LDAF=0.0030;AVGPOST=0.9983;RSQ=0.8084;ERATE=0.0004;THETA=0.0050;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 142626738 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7079;ERATE=0.0009;THETA=0.0085;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 142628714 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.792;LDAF=0.0521;AVGPOST=0.9789;RSQ=0.8266;ERATE=0.0005;THETA=0.0053;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 142630383 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.812;LDAF=0.0179;AVGPOST=0.9941;RSQ=0.8588;ERATE=0.0004;THETA=0.0116;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 142630531 . C CT 1839 PASS INDEL;BAVGPOST=0.950;BRSQ=0.610;LDAF=0.0836;AVGPOST=0.9287;RSQ=0.6081;ERATE=0.0258;THETA=0.0032;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 142630609 . A AT 268 PASS INDEL;BAVGPOST=0.990;BRSQ=0.291;LDAF=0.0727;AVGPOST=0.8719;RSQ=0.2095;ERATE=0.0060;THETA=0.0034;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 142632382 . GC G 68 PASS INDEL;BAVGPOST=0.983;BRSQ=0.132;LDAF=0.0466;AVGPOST=0.9137;RSQ=0.1705;ERATE=0.0026;THETA=0.0034;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 142632731 . C CCACT 3871 PASS INDEL;BAVGPOST=0.936;BRSQ=0.280;LDAF=0.0816;AVGPOST=0.8753;RSQ=0.2497;ERATE=0.0134;THETA=0.0080;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 142632807 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.629;LDAF=0.0022;AVGPOST=0.9982;RSQ=0.6743;ERATE=0.0014;THETA=0.0073;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 142635182 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0030;AVGPOST=0.9978;RSQ=0.7119;ERATE=0.0010;THETA=0.0118;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 142635240 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.930;BRSQ=0.781;LDAF=0.2166;AVGPOST=0.9226;RSQ=0.8040;ERATE=0.0019;THETA=0.0069;AC=444;AN=2184 GT:DS:GL:BD 0.20329671 0 1 142635257 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.427;LDAF=0.0226;AVGPOST=0.9793;RSQ=0.6476;ERATE=0.0006;THETA=0.0078;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 142636104 . AG A 80 PASS INDEL;BAVGPOST=0.980;BRSQ=0.121;LDAF=0.0147;AVGPOST=0.9752;RSQ=0.2514;ERATE=0.0014;THETA=0.0035;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 142636589 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.703;LDAF=0.0046;AVGPOST=0.9974;RSQ=0.7775;ERATE=0.0005;THETA=0.0066;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 142636862 . AG A 807 PASS INDEL;BAVGPOST=0.944;BRSQ=0.153;LDAF=0.1956;AVGPOST=0.7021;RSQ=0.2191;ERATE=0.0136;THETA=0.0167;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 142637689 . CA C 133 PASS INDEL;BAVGPOST=0.977;BRSQ=0.080;LDAF=0.0342;AVGPOST=0.9412;RSQ=0.2619;ERATE=0.0021;THETA=0.0019;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 142638098 . TC T 143 PASS INDEL;BAVGPOST=0.996;BRSQ=0.452;LDAF=0.0133;AVGPOST=0.9784;RSQ=0.2984;ERATE=0.0022;THETA=0.0056;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 142638167 . AC A 4597 PASS INDEL;BAVGPOST=0.953;BRSQ=0.627;LDAF=0.0954;AVGPOST=0.9202;RSQ=0.5927;ERATE=0.0218;THETA=0.0017;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 142639646 . TC T 257 PASS INDEL;BAVGPOST=0.993;BRSQ=0.382;LDAF=0.0114;AVGPOST=0.9817;RSQ=0.2690;ERATE=0.0038;THETA=0.0016;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 142640261 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0054;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142641275 . GT G 93 PASS INDEL;BAVGPOST=0.997;BRSQ=0.353;LDAF=0.0197;AVGPOST=0.9663;RSQ=0.2613;ERATE=0.0029;THETA=0.0034;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 142641363 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.932;BRSQ=0.846;LDAF=0.6495;AVGPOST=0.9381;RSQ=0.8824;ERATE=0.0011;THETA=0.0031;AC=1415;AN=2184 GT:DS:GL:BD 0.64789379 1 1 142642414 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0064;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142643934 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6318;ERATE=0.0004;THETA=0.0054;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142644188 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0061;AVGPOST=0.9972;RSQ=0.8421;ERATE=0.0005;THETA=0.0079;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 142644277 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.776;LDAF=0.0070;AVGPOST=0.9954;RSQ=0.7154;ERATE=0.0021;THETA=0.0043;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 142644938 . GT G 78 PASS INDEL;BAVGPOST=0.981;BRSQ=0.199;LDAF=0.0117;AVGPOST=0.9819;RSQ=0.3371;ERATE=0.0015;THETA=0.0035;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 142645720 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.912;BRSQ=0.840;LDAF=0.5867;AVGPOST=0.9065;RSQ=0.8452;ERATE=0.0067;THETA=0.0011;AC=1290;AN=2184 GT:DS:GL:BD 0.59065932 1 1 142646316 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0033;AVGPOST=0.9987;RSQ=0.8194;ERATE=0.0006;THETA=0.0036;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 142646391 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.659;LDAF=0.0133;AVGPOST=0.9868;RSQ=0.5869;ERATE=0.0042;THETA=0.0010;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 142647390 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.544;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6577;ERATE=0.0004;THETA=0.0055;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 142647478 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.826;LDAF=0.1238;AVGPOST=0.9638;RSQ=0.8575;ERATE=0.0016;THETA=0.0067;AC=259;AN=2184 GT:DS:GL:BD 0.11858974 0 1 142647481 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142647553 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6010;ERATE=0.0005;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142648541 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142648589 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4570;ERATE=0.0004;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142649401 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0004;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142650406 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8552;ERATE=0.0004;THETA=0.0061;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142650957 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7905;ERATE=0.0003;THETA=0.0059;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142651167 rs71582734 TA T 19460 PASS INDEL;BAVGPOST=0.957;BRSQ=0.819;LDAF=0.1763;AVGPOST=0.9480;RSQ=0.8246;ERATE=0.0406;THETA=0.0075;AC=345;AN=2184 GT:DS:GL:BD 0.15796703 0 1 142651485 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142651548 . C CTCCATTT 9343 PASS INDEL;BAVGPOST=0.698;BRSQ=0.364;LDAF=0.8080;AVGPOST=0.8128;RSQ=0.6082;ERATE=0.0028;THETA=0.0011;AC=1897;AN=2184 GT:DS:GL:BD 0.86858976 1 1 142651655 . A AACACTATC 140 PASS INDEL;BAVGPOST=0.999;BRSQ=0.738;LDAF=0.0029;AVGPOST=0.9960;RSQ=0.3803;ERATE=0.0013;THETA=0.0032;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142651913 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142652741 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.691;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4549;ERATE=0.0007;THETA=0.0075;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142652784 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.579;LDAF=0.0209;AVGPOST=0.9802;RSQ=0.6139;ERATE=0.0041;THETA=0.0013;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 142654443 . CAGG C 1535 PASS INDEL;BAVGPOST=0.998;BRSQ=0.896;LDAF=0.0082;AVGPOST=0.9968;RSQ=0.8546;ERATE=0.0005;THETA=0.0039;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 142656538 . AC A 359 PASS INDEL;BAVGPOST=0.998;BRSQ=0.814;LDAF=0.0061;AVGPOST=0.9978;RSQ=0.8474;ERATE=0.0030;THETA=0.0033;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 142657355 . C CT 13467 PASS INDEL;BAVGPOST=0.973;BRSQ=0.837;LDAF=0.0933;AVGPOST=0.9721;RSQ=0.8643;ERATE=0.0008;THETA=0.0026;AC=185;AN=2184 GT:DS:GL:BD 0.08470696 0 1 142658311 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.930;BRSQ=0.239;LDAF=0.9708;AVGPOST=0.9524;RSQ=0.3412;ERATE=0.0029;THETA=0.0044;AC=2163;AN=2184 GT:DS:GL:BD 0.99038464 1 1 142659029 . CCT C 767 PASS INDEL;BAVGPOST=0.995;BRSQ=0.793;LDAF=0.0145;AVGPOST=0.9894;RSQ=0.7199;ERATE=0.0008;THETA=0.0079;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 142659500 . CAT C 915 PASS INDEL;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0053;AVGPOST=0.9977;RSQ=0.8214;ERATE=0.0007;THETA=0.0096;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 142659828 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0105;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142661111 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0037;AVGPOST=0.9989;RSQ=0.8708;ERATE=0.0005;THETA=0.0016;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 142661121 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8435;ERATE=0.0003;THETA=0.0136;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142661182 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.917;BRSQ=0.751;LDAF=0.3186;AVGPOST=0.9156;RSQ=0.7911;ERATE=0.0093;THETA=0.0016;AC=668;AN=2184 GT:DS:GL:BD 0.30586082 0 1 142661302 . T TC 339 PASS INDEL;BAVGPOST=0.987;BRSQ=0.726;LDAF=0.0247;AVGPOST=0.9855;RSQ=0.7564;ERATE=0.0089;THETA=0.0040;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 142661306 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9420;ERATE=0.0003;THETA=0.0092;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 142661360 . AG A 50 PASS INDEL;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0090;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142663350 . AG A 73 PASS INDEL;BAVGPOST=0.999;BRSQ=0.698;LDAF=0.0022;AVGPOST=0.9977;RSQ=0.5915;ERATE=0.0005;THETA=0.0045;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 142665074 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.911;LDAF=0.0072;AVGPOST=0.9975;RSQ=0.8634;ERATE=0.0006;THETA=0.0020;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 142665216 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142665595 . GA G 48 PASS INDEL;BAVGPOST=0.996;BRSQ=0.621;LDAF=0.0074;AVGPOST=0.9922;RSQ=0.5417;ERATE=0.0017;THETA=0.0066;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 142668719 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.956;BRSQ=0.902;LDAF=0.6645;AVGPOST=0.9460;RSQ=0.8910;ERATE=0.0023;THETA=0.0123;AC=1452;AN=2184 GT:DS:GL:BD 0.66483516 1 1 142669217 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.924;BRSQ=0.880;LDAF=0.6103;AVGPOST=0.9229;RSQ=0.8821;ERATE=0.0034;THETA=0.0096;AC=1336;AN=2184 GT:DS:GL:BD 0.61172163 1 1 142669300 . CTG C 35 PASS INDEL;BAVGPOST=0.995;BRSQ=0.550;LDAF=0.0090;AVGPOST=0.9878;RSQ=0.4117;ERATE=0.0026;THETA=0.0129;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 142669796 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.708;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5417;ERATE=0.0004;THETA=0.0061;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142670448 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7764;ERATE=0.0003;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142670956 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.766;LDAF=0.0018;AVGPOST=0.9985;RSQ=0.6449;ERATE=0.0006;THETA=0.0044;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 142672180 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.8045;ERATE=0.0003;THETA=0.0040;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 142672346 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.738;LDAF=0.1155;AVGPOST=0.9400;RSQ=0.7514;ERATE=0.0224;THETA=0.0034;AC=218;AN=2184 GT:DS:GL:BD 0.09981685 0 1 142672643 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.697;LDAF=0.0362;AVGPOST=0.9819;RSQ=0.8170;ERATE=0.0004;THETA=0.0017;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 142673128 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.939;BRSQ=0.687;LDAF=0.1168;AVGPOST=0.9296;RSQ=0.7068;ERATE=0.0282;THETA=0.0064;AC=211;AN=2184 GT:DS:GL:BD 0.09661172 0 1 142674743 . CTT C 5230 PASS INDEL;BAVGPOST=0.956;BRSQ=0.719;LDAF=0.1105;AVGPOST=0.9274;RSQ=0.6670;ERATE=0.0293;THETA=0.0009;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 142674778 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.898;LDAF=0.1792;AVGPOST=0.9676;RSQ=0.9072;ERATE=0.0009;THETA=0.0073;AC=381;AN=2184 GT:DS:GL:BD 0.17445055 0 1 142674779 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.529;LDAF=0.0134;AVGPOST=0.9869;RSQ=0.6115;ERATE=0.0049;THETA=0.0155;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 142675851 . CA C 36 PASS INDEL;BAVGPOST=0.999;BRSQ=0.816;LDAF=0.0022;AVGPOST=0.9978;RSQ=0.5375;ERATE=0.0007;THETA=0.0035;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 142675956 . AG A 8678 PASS INDEL;BAVGPOST=0.901;BRSQ=0.573;LDAF=0.1960;AVGPOST=0.8575;RSQ=0.5654;ERATE=0.0503;THETA=0.0217;AC=280;AN=2184 GT:DS:GL:BD 0.12820514 0 1 142676454 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.957;BRSQ=0.927;LDAF=0.5911;AVGPOST=0.9123;RSQ=0.8636;ERATE=0.0048;THETA=0.0069;AC=1298;AN=2184 GT:DS:GL:BD 0.59432232 1 1 142677366 . CG C 303 PASS INDEL;BAVGPOST=0.811;BRSQ=0.141;LDAF=0.1938;AVGPOST=0.7096;RSQ=0.2093;ERATE=0.0207;THETA=0.0147;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 142677393 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.861;BRSQ=0.222;LDAF=0.1386;AVGPOST=0.7927;RSQ=0.2484;ERATE=0.0203;THETA=0.0074;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 142678171 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0048;AVGPOST=0.9968;RSQ=0.7102;ERATE=0.0020;THETA=0.0028;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 142678284 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.724;BRSQ=0.371;LDAF=0.6640;AVGPOST=0.7296;RSQ=0.4576;ERATE=0.0262;THETA=0.0073;AC=1608;AN=2184 GT:DS:GL:BD 0.73626375 1 1 142678578 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5464;ERATE=0.0005;THETA=0.0130;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142678598 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0024;AVGPOST=0.9975;RSQ=0.5687;ERATE=0.0005;THETA=0.0125;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 142678634 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.649;LDAF=0.0387;AVGPOST=0.9770;RSQ=0.7764;ERATE=0.0006;THETA=0.0101;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 142678767 . TTAGA T 991 PASS INDEL;BAVGPOST=0.995;BRSQ=0.782;LDAF=0.0119;AVGPOST=0.9938;RSQ=0.8127;ERATE=0.0004;THETA=0.0173;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 142678955 . CT C 666 PASS INDEL;BAVGPOST=0.964;BRSQ=0.623;LDAF=0.0543;AVGPOST=0.9561;RSQ=0.6498;ERATE=0.0154;THETA=0.0094;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 142679996 . CG C 67 PASS INDEL;BAVGPOST=0.994;BRSQ=0.583;LDAF=0.0100;AVGPOST=0.9899;RSQ=0.6087;ERATE=0.0024;THETA=0.0208;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 142681629 . GC G 13 PASS INDEL;BAVGPOST=0.980;BRSQ=0.247;LDAF=0.0141;AVGPOST=0.9798;RSQ=0.4103;ERATE=0.0029;THETA=0.0013;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 142681951 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.942;LDAF=0.0044;AVGPOST=0.9991;RSQ=0.9058;ERATE=0.0004;THETA=0.0048;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 142682431 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.819;LDAF=0.0057;AVGPOST=0.9981;RSQ=0.8573;ERATE=0.0009;THETA=0.0080;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 142682455 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0043;AVGPOST=0.9991;RSQ=0.9073;ERATE=0.0004;THETA=0.0074;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 142682462 . AAAG A 1468 PASS INDEL;BAVGPOST=0.996;BRSQ=0.799;LDAF=0.0093;AVGPOST=0.9952;RSQ=0.7799;ERATE=0.0006;THETA=0.0070;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 142683141 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.746;LDAF=0.0472;AVGPOST=0.9832;RSQ=0.8606;ERATE=0.0003;THETA=0.0151;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 142683182 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.779;LDAF=0.0515;AVGPOST=0.9782;RSQ=0.8313;ERATE=0.0008;THETA=0.0020;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 142683458 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.629;LDAF=0.0091;AVGPOST=0.9915;RSQ=0.6108;ERATE=0.0027;THETA=0.0044;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 142684025 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4880;ERATE=0.0004;THETA=0.0107;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142684030 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.970;LDAF=0.0655;AVGPOST=0.9892;RSQ=0.9256;ERATE=0.0024;THETA=0.0105;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 142684202 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.681;LDAF=0.0539;AVGPOST=0.9585;RSQ=0.6676;ERATE=0.0107;THETA=0.0046;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 142684297 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.585;LDAF=0.0426;AVGPOST=0.9754;RSQ=0.7867;ERATE=0.0005;THETA=0.0151;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 142684308 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.900;BRSQ=0.845;LDAF=0.4353;AVGPOST=0.8957;RSQ=0.8676;ERATE=0.0044;THETA=0.0018;AC=970;AN=2184 GT:DS:GL:BD 0.44413918 0 1 142684357 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.7826;ERATE=0.0005;THETA=0.0114;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 142684358 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.635;LDAF=0.0032;AVGPOST=0.9964;RSQ=0.5450;ERATE=0.0018;THETA=0.0124;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 142684369 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.958;BRSQ=0.944;LDAF=0.5395;AVGPOST=0.9701;RSQ=0.9621;ERATE=0.0011;THETA=0.0012;AC=1180;AN=2184 GT:DS:GL:BD 0.54029304 1 1 142684381 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.780;LDAF=0.0071;AVGPOST=0.9939;RSQ=0.6553;ERATE=0.0022;THETA=0.0023;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 142684394 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.786;LDAF=0.0049;AVGPOST=0.9975;RSQ=0.7959;ERATE=0.0007;THETA=0.0045;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 142684437 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142684764 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.400;LDAF=0.0230;AVGPOST=0.9800;RSQ=0.6674;ERATE=0.0009;THETA=0.0033;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 142684781 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.917;BRSQ=0.584;LDAF=0.1296;AVGPOST=0.8892;RSQ=0.5987;ERATE=0.0194;THETA=0.0078;AC=185;AN=2184 GT:DS:GL:BD 0.08470696 0 1 142686457 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.885;BRSQ=0.508;LDAF=0.1783;AVGPOST=0.8431;RSQ=0.5261;ERATE=0.0242;THETA=0.0097;AC=257;AN=2184 GT:DS:GL:BD 0.11767399 0 1 142686743 . GA G 2858 PASS INDEL;BAVGPOST=0.965;BRSQ=0.720;LDAF=0.0793;AVGPOST=0.9537;RSQ=0.7248;ERATE=0.0240;THETA=0.0019;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 142687533 . T TTGTC 542 PASS INDEL;BAVGPOST=0.990;BRSQ=0.558;LDAF=0.0205;AVGPOST=0.9733;RSQ=0.4414;ERATE=0.0041;THETA=0.0098;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 142688347 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.954;BRSQ=0.930;LDAF=0.5603;AVGPOST=0.9472;RSQ=0.9334;ERATE=0.0096;THETA=0.0025;AC=1226;AN=2184 GT:DS:GL:BD 0.56135529 1 1 142689118 . CCA C 159 PASS INDEL;BAVGPOST=0.957;BRSQ=0.250;LDAF=0.0657;AVGPOST=0.8993;RSQ=0.3161;ERATE=0.0071;THETA=0.0070;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 142689205 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.439;LDAF=0.0307;AVGPOST=0.9601;RSQ=0.4860;ERATE=0.0069;THETA=0.0055;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 142689893 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.774;LDAF=0.0622;AVGPOST=0.9741;RSQ=0.8269;ERATE=0.0053;THETA=0.0024;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 142691573 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.422;LDAF=0.0095;AVGPOST=0.9858;RSQ=0.3807;ERATE=0.0040;THETA=0.0012;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 142691660 . TG T 130 PASS INDEL;BAVGPOST=0.899;BRSQ=0.242;LDAF=0.0783;AVGPOST=0.9112;RSQ=0.4961;ERATE=0.0091;THETA=0.0006;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 142691665 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.902;BRSQ=0.849;LDAF=0.5162;AVGPOST=0.9069;RSQ=0.8747;ERATE=0.0061;THETA=0.0114;AC=1161;AN=2184 GT:DS:GL:BD 0.53159338 1 1 142691715 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.723;LDAF=0.0038;AVGPOST=0.9946;RSQ=0.4076;ERATE=0.0009;THETA=0.0042;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 142691736 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.959;BRSQ=0.946;LDAF=0.5996;AVGPOST=0.9558;RSQ=0.9413;ERATE=0.0031;THETA=0.0011;AC=1312;AN=2184 GT:DS:GL:BD 0.60073262 1 1 142691766 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.941;BRSQ=0.919;LDAF=0.4801;AVGPOST=0.9573;RSQ=0.9473;ERATE=0.0007;THETA=0.0005;AC=1060;AN=2184 GT:DS:GL:BD 0.48534799 0 1 142691767 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.941;BRSQ=0.919;LDAF=0.4789;AVGPOST=0.9579;RSQ=0.9485;ERATE=0.0007;THETA=0.0013;AC=1056;AN=2184 GT:DS:GL:BD 0.48351648 0 1 142692217 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0023;AVGPOST=0.9984;RSQ=0.6872;ERATE=0.0006;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 142692359 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.552;LDAF=0.0024;AVGPOST=0.9971;RSQ=0.4825;ERATE=0.0009;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142692393 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.8097;ERATE=0.0007;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 142692405 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.950;LDAF=0.0044;AVGPOST=0.9991;RSQ=0.9059;ERATE=0.0005;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 142692528 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.649;LDAF=0.0088;AVGPOST=0.9915;RSQ=0.6026;ERATE=0.0005;THETA=0.0075;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 142692538 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.766;LDAF=0.0053;AVGPOST=0.9961;RSQ=0.6926;ERATE=0.0014;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 142692554 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142692572 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.929;LDAF=0.0082;AVGPOST=0.9981;RSQ=0.9171;ERATE=0.0006;THETA=0.0017;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 142692573 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.941;BRSQ=0.911;LDAF=0.5105;AVGPOST=0.9452;RSQ=0.9272;ERATE=0.0056;THETA=0.0010;AC=1135;AN=2184 GT:DS:GL:BD 0.51968867 1 1 142692616 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.782;LDAF=0.0556;AVGPOST=0.9814;RSQ=0.8670;ERATE=0.0006;THETA=0.0040;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 142692818 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.991;LDAF=0.5553;AVGPOST=0.9896;RSQ=0.9872;ERATE=0.0006;THETA=0.0051;AC=1210;AN=2184 GT:DS:GL:BD 0.55402929 1 1 142693068 . TA T 464 PASS INDEL;BAVGPOST=0.995;BRSQ=0.679;LDAF=0.0105;AVGPOST=0.9922;RSQ=0.6852;ERATE=0.0011;THETA=0.0065;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 142693127 . TA T 50 PASS INDEL;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0056;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142693151 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.718;LDAF=0.0037;AVGPOST=0.9974;RSQ=0.7000;ERATE=0.0014;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 142693323 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.881;LDAF=0.0080;AVGPOST=0.9965;RSQ=0.8213;ERATE=0.0007;THETA=0.0028;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 142694435 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.833;BRSQ=0.733;LDAF=0.4724;AVGPOST=0.8289;RSQ=0.7634;ERATE=0.0262;THETA=0.0025;AC=1085;AN=2184 GT:DS:GL:BD 0.49679488 0 1 142694607 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.726;LDAF=0.0013;AVGPOST=0.9980;RSQ=0.2700;ERATE=0.0007;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142694619 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.645;LDAF=0.0051;AVGPOST=0.9944;RSQ=0.5365;ERATE=0.0006;THETA=0.0025;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 142695654 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.953;BRSQ=0.929;LDAF=0.5661;AVGPOST=0.9473;RSQ=0.9282;ERATE=0.0089;THETA=0.0072;AC=1230;AN=2184 GT:DS:GL:BD 0.56318682 1 1 142696167 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142696196 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.731;LDAF=0.0023;AVGPOST=0.9971;RSQ=0.4703;ERATE=0.0007;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142696469 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7891;ERATE=0.0006;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142696653 . AT A 895 PASS INDEL;BAVGPOST=0.938;BRSQ=0.464;LDAF=0.0832;AVGPOST=0.9063;RSQ=0.5071;ERATE=0.0175;THETA=0.0057;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 142696857 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.951;BRSQ=0.540;LDAF=0.0642;AVGPOST=0.9318;RSQ=0.5255;ERATE=0.0133;THETA=0.0027;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 142696877 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.647;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.3854;ERATE=0.0006;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142697261 . C CA 136 PASS INDEL;BAVGPOST=0.968;BRSQ=0.276;LDAF=0.0505;AVGPOST=0.9232;RSQ=0.3518;ERATE=0.0084;THETA=0.0031;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 142697631 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142698253 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.768;LDAF=0.0167;AVGPOST=0.9904;RSQ=0.7493;ERATE=0.0029;THETA=0.0018;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 142698952 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.3750;ERATE=0.0007;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142699960 rs74315780 AT A 17780 PASS INDEL;BAVGPOST=0.640;BRSQ=0.294;LDAF=0.3835;AVGPOST=0.6909;RSQ=0.4036;ERATE=0.0369;THETA=0.0018;AC=670;AN=2184 GT:DS:GL:BD 0.30677655 0 1 142700518 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.730;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5364;ERATE=0.0005;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142700527 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5316;ERATE=0.0006;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142700743 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.943;BRSQ=0.752;LDAF=0.1280;AVGPOST=0.9368;RSQ=0.8022;ERATE=0.0007;THETA=0.0013;AC=237;AN=2184 GT:DS:GL:BD 0.10851648 0 1 142700854 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.801;LDAF=0.0044;AVGPOST=0.9971;RSQ=0.7130;ERATE=0.0011;THETA=0.0026;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 142700855 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0109;AVGPOST=0.9972;RSQ=0.9039;ERATE=0.0004;THETA=0.0021;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 142700856 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0109;AVGPOST=0.9972;RSQ=0.9051;ERATE=0.0004;THETA=0.0039;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 142700863 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5806;ERATE=0.0006;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142700873 . AC A 724 PASS INDEL;BAVGPOST=0.996;BRSQ=0.887;LDAF=0.0188;AVGPOST=0.9967;RSQ=0.9250;ERATE=0.0005;THETA=0.0007;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 142700875 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4212;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142700886 rs111516390 C CA 163 PASS INDEL;BAVGPOST=0.970;BRSQ=0.504;LDAF=0.0479;AVGPOST=0.9400;RSQ=0.4456;ERATE=0.0152;THETA=0.0011;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 142701041 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.898;LDAF=0.0207;AVGPOST=0.9977;RSQ=0.9557;ERATE=0.0004;THETA=0.0006;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 142701414 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.905;BRSQ=0.690;LDAF=0.8434;AVGPOST=0.8718;RSQ=0.6899;ERATE=0.0065;THETA=0.0025;AC=1896;AN=2184 GT:DS:GL:BD 0.86813188 1 1 142701554 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4249;ERATE=0.0005;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142701562 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.689;LDAF=0.0050;AVGPOST=0.9958;RSQ=0.6215;ERATE=0.0022;THETA=0.0022;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 142701659 . TA T 83 PASS INDEL;BAVGPOST=0.944;BRSQ=0.252;LDAF=0.0489;AVGPOST=0.9791;RSQ=0.8310;ERATE=0.0005;THETA=0.0029;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 142701941 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.935;BRSQ=0.905;LDAF=0.5244;AVGPOST=0.9582;RSQ=0.9485;ERATE=0.0011;THETA=0.0034;AC=1151;AN=2184 GT:DS:GL:BD 0.52701467 1 1 142701945 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.640;LDAF=0.0078;AVGPOST=0.9895;RSQ=0.4381;ERATE=0.0013;THETA=0.0025;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 142702262 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0109;AVGPOST=0.9983;RSQ=0.9444;ERATE=0.0005;THETA=0.0056;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 142702510 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.728;LDAF=0.0035;AVGPOST=0.9972;RSQ=0.6600;ERATE=0.0008;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 142702584 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.980;LDAF=0.5668;AVGPOST=0.9850;RSQ=0.9812;ERATE=0.0007;THETA=0.0011;AC=1238;AN=2184 GT:DS:GL:BD 0.56684983 1 1 142702767 . AT A 8530 PASS INDEL;BAVGPOST=0.867;BRSQ=0.529;LDAF=0.1592;AVGPOST=0.8842;RSQ=0.6840;ERATE=0.0020;THETA=0.0009;AC=267;AN=2184 GT:DS:GL:BD 0.12225275 0 1 142702814 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.934;LDAF=0.2852;AVGPOST=0.9694;RSQ=0.9495;ERATE=0.0005;THETA=0.0006;AC=625;AN=2184 GT:DS:GL:BD 0.28617215 0 1 142702842 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.736;LDAF=0.0052;AVGPOST=0.9964;RSQ=0.7169;ERATE=0.0018;THETA=0.0013;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 142702865 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0004;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142702935 . C CAA 77 PASS INDEL;BAVGPOST=0.991;BRSQ=0.486;LDAF=0.0151;AVGPOST=0.9835;RSQ=0.5443;ERATE=0.0024;THETA=0.0017;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 142703037 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.810;LDAF=0.0638;AVGPOST=0.9814;RSQ=0.8787;ERATE=0.0008;THETA=0.0078;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 142703208 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.947;BRSQ=0.923;LDAF=0.5146;AVGPOST=0.9452;RSQ=0.9292;ERATE=0.0066;THETA=0.0036;AC=1131;AN=2184 GT:DS:GL:BD 0.51785713 1 1 142703245 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8743;ERATE=0.0004;THETA=0.0023;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 142703901 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.590;LDAF=0.0039;AVGPOST=0.9957;RSQ=0.5536;ERATE=0.0008;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 142705354 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.744;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4580;ERATE=0.0005;THETA=0.0066;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142705523 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.814;LDAF=0.0050;AVGPOST=0.9970;RSQ=0.7403;ERATE=0.0011;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 142706283 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5492;ERATE=0.0005;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142706285 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4199;ERATE=0.0007;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142706294 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.624;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.3846;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142706374 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.700;LDAF=0.0133;AVGPOST=0.9905;RSQ=0.6898;ERATE=0.0019;THETA=0.0071;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 142706673 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.730;LDAF=0.0232;AVGPOST=0.9839;RSQ=0.7260;ERATE=0.0026;THETA=0.0019;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 142706707 rs5777452 A AG 84 PASS INDEL;BAVGPOST=0.994;BRSQ=0.619;LDAF=0.0064;AVGPOST=0.9944;RSQ=0.6730;ERATE=0.0008;THETA=0.0035;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 142706845 . AC A 266 PASS INDEL;BAVGPOST=0.996;BRSQ=0.718;LDAF=0.0103;AVGPOST=0.9902;RSQ=0.6038;ERATE=0.0019;THETA=0.0010;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 142707113 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142707123 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.784;LDAF=0.0127;AVGPOST=0.9929;RSQ=0.7684;ERATE=0.0005;THETA=0.0043;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 142707851 . GAT G 119 PASS INDEL;BAVGPOST=0.997;BRSQ=0.829;LDAF=0.0107;AVGPOST=0.9935;RSQ=0.7617;ERATE=0.0009;THETA=0.0011;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 142707921 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6843;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142708018 . C CT 68 PASS INDEL;BAVGPOST=0.936;BRSQ=0.137;LDAF=0.0566;AVGPOST=0.9479;RSQ=0.6132;ERATE=0.0022;THETA=0.0006;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 142708039 . C CTT 105 PASS INDEL;BAVGPOST=0.962;BRSQ=0.189;LDAF=0.0613;AVGPOST=0.8934;RSQ=0.2128;ERATE=0.0076;THETA=0.0010;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 142708047 . TGA T 177 PASS INDEL;BAVGPOST=0.936;BRSQ=0.133;LDAF=0.0481;AVGPOST=0.9706;RSQ=0.7655;ERATE=0.0007;THETA=0.0033;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 142708142 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.923;BRSQ=0.881;LDAF=0.5654;AVGPOST=0.9305;RSQ=0.9074;ERATE=0.0016;THETA=0.0007;AC=1268;AN=2184 GT:DS:GL:BD 0.58058608 1 1 142708152 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4356;ERATE=0.0005;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142708180 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.756;LDAF=0.0314;AVGPOST=0.9897;RSQ=0.8627;ERATE=0.0008;THETA=0.0032;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 142708318 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9390;ERATE=0.0004;THETA=0.0057;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 142708571 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0186;AVGPOST=0.9989;RSQ=0.9764;ERATE=0.0004;THETA=0.0007;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 142708594 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5033;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142708634 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9247;ERATE=0.0004;THETA=0.0090;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 142708667 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6387;ERATE=0.0005;THETA=0.0072;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 142708691 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.758;LDAF=0.0048;AVGPOST=0.9952;RSQ=0.5825;ERATE=0.0016;THETA=0.0057;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 142708795 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.933;LDAF=0.0630;AVGPOST=0.9811;RSQ=0.8739;ERATE=0.0011;THETA=0.0043;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 142709579 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.559;LDAF=0.0035;AVGPOST=0.9967;RSQ=0.6167;ERATE=0.0004;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 142709618 . CAT C 110 PASS INDEL;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5778;ERATE=0.0004;THETA=0.0053;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142709643 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9998;AVGPOST=0.9996;RSQ=0.0496;ERATE=0.0004;THETA=0.0009;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 142709654 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7415;ERATE=0.0004;THETA=0.0055;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142709701 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.660;LDAF=0.0096;AVGPOST=0.9891;RSQ=0.4999;ERATE=0.0039;THETA=0.0078;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 142709836 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.634;LDAF=0.0106;AVGPOST=0.9867;RSQ=0.4853;ERATE=0.0013;THETA=0.0072;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 142709870 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.669;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5341;ERATE=0.0006;THETA=0.0075;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142709904 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.925;BRSQ=0.876;LDAF=0.4620;AVGPOST=0.9279;RSQ=0.9015;ERATE=0.0078;THETA=0.0019;AC=1025;AN=2184 GT:DS:GL:BD 0.46932235 0 1 142710063 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.869;BRSQ=0.729;LDAF=0.3670;AVGPOST=0.8613;RSQ=0.7555;ERATE=0.0294;THETA=0.0061;AC=803;AN=2184 GT:DS:GL:BD 0.36767399 0 1 142710100 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.867;BRSQ=0.814;LDAF=0.4485;AVGPOST=0.8780;RSQ=0.8591;ERATE=0.0052;THETA=0.0071;AC=1018;AN=2184 GT:DS:GL:BD 0.46611720 0 1 142710109 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.871;BRSQ=0.822;LDAF=0.4309;AVGPOST=0.8871;RSQ=0.8727;ERATE=0.0025;THETA=0.0020;AC=976;AN=2184 GT:DS:GL:BD 0.44688645 0 1 142710181 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.902;LDAF=0.0603;AVGPOST=0.9809;RSQ=0.8720;ERATE=0.0014;THETA=0.0011;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 142710286 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0071;AVGPOST=0.9977;RSQ=0.8956;ERATE=0.0004;THETA=0.0060;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 142711059 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.845;BRSQ=0.527;LDAF=0.2137;AVGPOST=0.8548;RSQ=0.6683;ERATE=0.0010;THETA=0.0005;AC=374;AN=2184 GT:DS:GL:BD 0.17124543 0 1 142711065 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.845;BRSQ=0.527;LDAF=0.2156;AVGPOST=0.8505;RSQ=0.6607;ERATE=0.0013;THETA=0.0049;AC=373;AN=2184 GT:DS:GL:BD 0.17078754 0 1 142711103 . T TA 1216 PASS INDEL;BAVGPOST=0.824;BRSQ=0.333;LDAF=0.1592;AVGPOST=0.8172;RSQ=0.4725;ERATE=0.0079;THETA=0.0037;AC=222;AN=2184 GT:DS:GL:BD 0.10164835 0 1 142711286 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.702;LDAF=0.0010;AVGPOST=0.9980;RSQ=0.0896;ERATE=0.0007;THETA=0.0032;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 142711683 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0659;AVGPOST=0.9947;RSQ=0.9647;ERATE=0.0007;THETA=0.0011;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 142712525 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.942;LDAF=0.0656;AVGPOST=0.9938;RSQ=0.9580;ERATE=0.0006;THETA=0.0009;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 142713152 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.954;LDAF=0.5365;AVGPOST=0.9554;RSQ=0.9420;ERATE=0.0070;THETA=0.0014;AC=1185;AN=2184 GT:DS:GL:BD 0.54258239 1 1 142713167 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.664;LDAF=0.0049;AVGPOST=0.9948;RSQ=0.5560;ERATE=0.0020;THETA=0.0043;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 142713168 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7755;ERATE=0.0006;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142713276 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.762;LDAF=0.0016;AVGPOST=0.9981;RSQ=0.5412;ERATE=0.0005;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142713346 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0096;AVGPOST=0.9971;RSQ=0.8900;ERATE=0.0004;THETA=0.0028;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 142713381 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.951;LDAF=0.5484;AVGPOST=0.9653;RSQ=0.9561;ERATE=0.0008;THETA=0.0008;AC=1209;AN=2184 GT:DS:GL:BD 0.55357140 1 1 142713411 . TTCTTA T 212 PASS INDEL;BAVGPOST=0.988;BRSQ=0.423;LDAF=0.0155;AVGPOST=0.9853;RSQ=0.6355;ERATE=0.0010;THETA=0.0076;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 142713470 . TG T 120 PASS INDEL;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0079;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142713724 . G GT 38 PASS INDEL;BAVGPOST=0.984;BRSQ=0.391;LDAF=0.0168;AVGPOST=0.9787;RSQ=0.4945;ERATE=0.0031;THETA=0.0011;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 142713815 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0096;AVGPOST=0.9964;RSQ=0.8456;ERATE=0.0007;THETA=0.0014;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 142713878 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.557;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4989;ERATE=0.0004;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142714101 . A AAC 2013 PASS INDEL;BAVGPOST=0.984;BRSQ=0.754;LDAF=0.0416;AVGPOST=0.9702;RSQ=0.6810;ERATE=0.0120;THETA=0.0021;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 142714122 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0024;AVGPOST=0.9991;RSQ=0.8483;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 142714219 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0194;AVGPOST=0.9980;RSQ=0.9560;ERATE=0.0003;THETA=0.0013;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 142714289 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0040;AVGPOST=0.9963;RSQ=0.5919;ERATE=0.0017;THETA=0.0022;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 142714337 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.8009;ERATE=0.0006;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 142714348 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.957;BRSQ=0.938;LDAF=0.5270;AVGPOST=0.9481;RSQ=0.9327;ERATE=0.0088;THETA=0.0018;AC=1166;AN=2184 GT:DS:GL:BD 0.53388280 1 1 142714355 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6082;ERATE=0.0004;THETA=0.0079;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142714401 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.619;LDAF=0.0434;AVGPOST=0.9773;RSQ=0.8051;ERATE=0.0004;THETA=0.0019;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 142714471 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0119;AVGPOST=0.9968;RSQ=0.8893;ERATE=0.0012;THETA=0.0021;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 142714532 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0050;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142714548 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.712;LDAF=0.0322;AVGPOST=0.9807;RSQ=0.7726;ERATE=0.0005;THETA=0.0011;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 142714894 . ATATT A 133 PASS INDEL;BAVGPOST=0.973;BRSQ=0.141;LDAF=0.0104;AVGPOST=0.9839;RSQ=0.3701;ERATE=0.0017;THETA=0.0032;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 142714986 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.589;LDAF=0.0218;AVGPOST=0.9778;RSQ=0.5510;ERATE=0.0040;THETA=0.0032;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 142715075 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.617;LDAF=0.0277;AVGPOST=0.9770;RSQ=0.6574;ERATE=0.0006;THETA=0.0013;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 142715273 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.277;LDAF=0.0049;AVGPOST=0.9925;RSQ=0.3642;ERATE=0.0006;THETA=0.0061;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 142715417 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.938;BRSQ=0.683;LDAF=0.1262;AVGPOST=0.9006;RSQ=0.6103;ERATE=0.0131;THETA=0.0039;AC=195;AN=2184 GT:DS:GL:BD 0.08928572 0 1 142715536 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.956;BRSQ=0.460;LDAF=0.0420;AVGPOST=0.9702;RSQ=0.7323;ERATE=0.0009;THETA=0.0006;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 142715572 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7242;ERATE=0.0004;THETA=0.0021;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 142715711 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.918;BRSQ=0.865;LDAF=0.5747;AVGPOST=0.8863;RSQ=0.8460;ERATE=0.0134;THETA=0.0059;AC=1287;AN=2184 GT:DS:GL:BD 0.58928573 1 1 142715723 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.441;LDAF=0.0100;AVGPOST=0.9885;RSQ=0.5096;ERATE=0.0012;THETA=0.0033;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 142715743 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.6823;ERATE=0.0004;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 142715820 . CCTT C 106 PASS INDEL;BAVGPOST=0.986;BRSQ=0.208;LDAF=0.0120;AVGPOST=0.9809;RSQ=0.3008;ERATE=0.0013;THETA=0.0023;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 142716000 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.902;LDAF=0.0576;AVGPOST=0.9810;RSQ=0.8573;ERATE=0.0009;THETA=0.0090;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 142716020 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.820;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8193;ERATE=0.0004;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 142716273 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.721;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4823;ERATE=0.0005;THETA=0.0041;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142716395 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.689;LDAF=0.0193;AVGPOST=0.9844;RSQ=0.7082;ERATE=0.0010;THETA=0.0016;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 142716436 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.930;LDAF=0.6741;AVGPOST=0.9613;RSQ=0.9215;ERATE=0.0027;THETA=0.0021;AC=1470;AN=2184 GT:DS:GL:BD 0.67307693 1 1 142716517 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.894;BRSQ=0.814;LDAF=0.5386;AVGPOST=0.8732;RSQ=0.8144;ERATE=0.0220;THETA=0.0044;AC=1189;AN=2184 GT:DS:GL:BD 0.54441392 1 1 142716942 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6277;ERATE=0.0006;THETA=0.0029;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142716947 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.652;LDAF=0.0073;AVGPOST=0.9917;RSQ=0.5503;ERATE=0.0025;THETA=0.0040;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 142716953 . TATC T 1053 PASS INDEL;BAVGPOST=0.997;BRSQ=0.871;LDAF=0.0100;AVGPOST=0.9940;RSQ=0.7781;ERATE=0.0006;THETA=0.0075;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 142717356 . A ATGTT 39 PASS INDEL;BAVGPOST=0.990;BRSQ=0.211;LDAF=0.0050;AVGPOST=0.9936;RSQ=0.5185;ERATE=0.0009;THETA=0.0031;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 142717369 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.728;LDAF=0.0146;AVGPOST=0.9901;RSQ=0.7217;ERATE=0.0023;THETA=0.0081;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 142717467 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7193;ERATE=0.0004;THETA=0.0042;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142717475 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7017;ERATE=0.0003;THETA=0.0047;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142717499 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0034;AVGPOST=0.9985;RSQ=0.8211;ERATE=0.0008;THETA=0.0018;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 142717557 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0019;AVGPOST=0.9972;RSQ=0.4306;ERATE=0.0005;THETA=0.0064;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142717620 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.837;LDAF=0.0285;AVGPOST=0.9854;RSQ=0.7799;ERATE=0.0096;THETA=0.0037;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 142717722 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142717800 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.383;LDAF=0.0364;AVGPOST=0.9739;RSQ=0.7244;ERATE=0.0012;THETA=0.0006;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 142717862 . CTTCT C 145 PASS INDEL;BAVGPOST=0.960;BRSQ=0.144;LDAF=0.0145;AVGPOST=0.9830;RSQ=0.4996;ERATE=0.0021;THETA=0.0112;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 142718243 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.816;LDAF=0.0095;AVGPOST=0.9937;RSQ=0.7157;ERATE=0.0030;THETA=0.0082;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 142718441 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.612;LDAF=0.0086;AVGPOST=0.9892;RSQ=0.5197;ERATE=0.0010;THETA=0.0042;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 142719277 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.738;LDAF=0.0031;AVGPOST=0.9964;RSQ=0.4726;ERATE=0.0016;THETA=0.0027;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 142719833 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.701;BRSQ=0.515;LDAF=0.3744;AVGPOST=0.7658;RSQ=0.6411;ERATE=0.0209;THETA=0.0046;AC=825;AN=2184 GT:DS:GL:BD 0.37774727 0 1 142720354 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.770;LDAF=0.0039;AVGPOST=0.9966;RSQ=0.6320;ERATE=0.0011;THETA=0.0016;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 142720680 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.803;LDAF=0.0036;AVGPOST=0.9968;RSQ=0.6619;ERATE=0.0009;THETA=0.0040;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 142720778 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6392;ERATE=0.0005;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142720897 . T TA 878 PASS INDEL;BAVGPOST=0.893;BRSQ=0.402;LDAF=0.1596;AVGPOST=0.8263;RSQ=0.4995;ERATE=0.0063;THETA=0.0017;AC=200;AN=2184 GT:DS:GL:BD 0.09157509 0 1 142721092 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.704;LDAF=0.0036;AVGPOST=0.9972;RSQ=0.6661;ERATE=0.0005;THETA=0.0039;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 142721264 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0008;AVGPOST=0.9988;RSQ=0.3721;ERATE=0.0004;THETA=0.0067;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142721274 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0045;AVGPOST=0.9957;RSQ=0.6159;ERATE=0.0023;THETA=0.0019;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 142721455 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8821;ERATE=0.0005;THETA=0.0024;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 142721456 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0040;AVGPOST=0.9992;RSQ=0.9123;ERATE=0.0004;THETA=0.0020;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 142721631 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7849;ERATE=0.0005;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142721642 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0058;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142721689 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.837;LDAF=0.0128;AVGPOST=0.9946;RSQ=0.8181;ERATE=0.0051;THETA=0.0012;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 142721725 . AT A 104 PASS INDEL;BAVGPOST=0.970;BRSQ=0.360;LDAF=0.0255;AVGPOST=0.9699;RSQ=0.5253;ERATE=0.0053;THETA=0.0030;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 142721743 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.650;LDAF=0.0454;AVGPOST=0.9659;RSQ=0.6962;ERATE=0.0040;THETA=0.0015;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 142721879 . AC A 161 PASS INDEL;BAVGPOST=0.951;BRSQ=0.492;LDAF=0.0442;AVGPOST=0.9692;RSQ=0.7197;ERATE=0.0030;THETA=0.0026;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 142722139 . G GACA 44 PASS INDEL;BAVGPOST=0.994;BRSQ=0.234;LDAF=0.0024;AVGPOST=0.9972;RSQ=0.5298;ERATE=0.0006;THETA=0.0039;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 142722270 . CA C 135 PASS INDEL;BAVGPOST=0.943;BRSQ=0.069;LDAF=0.0726;AVGPOST=0.8710;RSQ=0.1858;ERATE=0.0072;THETA=0.0043;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 142722422 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.670;LDAF=0.0057;AVGPOST=0.9948;RSQ=0.6348;ERATE=0.0010;THETA=0.0076;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 142722432 . CA C 154 PASS INDEL;BAVGPOST=0.999;BRSQ=0.669;LDAF=0.0065;AVGPOST=0.9910;RSQ=0.4453;ERATE=0.0011;THETA=0.0016;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 142722517 . AC A 63 PASS INDEL;BAVGPOST=0.999;BRSQ=0.723;LDAF=0.0025;AVGPOST=0.9967;RSQ=0.4370;ERATE=0.0009;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142722570 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.852;LDAF=0.0590;AVGPOST=0.9907;RSQ=0.9342;ERATE=0.0005;THETA=0.0024;AC=131;AN=2184 GT:DS:GL:BD 0.05998169 0 1 142722859 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9233;ERATE=0.0004;THETA=0.0055;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 142723025 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.898;BRSQ=0.776;LDAF=0.2953;AVGPOST=0.9093;RSQ=0.8268;ERATE=0.0017;THETA=0.0038;AC=627;AN=2184 GT:DS:GL:BD 0.28708792 0 1 142723240 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5407;ERATE=0.0005;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142723255 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.5411;ERATE=0.0003;THETA=0.0040;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142723288 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4659;ERATE=0.0005;THETA=0.0047;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142723341 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.910;LDAF=0.0600;AVGPOST=0.9913;RSQ=0.9387;ERATE=0.0006;THETA=0.0028;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 142723469 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6983;ERATE=0.0005;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142723798 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.604;LDAF=0.0035;AVGPOST=0.9960;RSQ=0.5782;ERATE=0.0014;THETA=0.0026;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 142723802 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.630;LDAF=0.0094;AVGPOST=0.9916;RSQ=0.6610;ERATE=0.0018;THETA=0.0049;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 142724291 . GATT G 67 PASS INDEL;BAVGPOST=0.997;BRSQ=0.456;LDAF=0.0062;AVGPOST=0.9918;RSQ=0.4991;ERATE=0.0004;THETA=0.0022;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 142724413 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.817;LDAF=0.0182;AVGPOST=0.9892;RSQ=0.7467;ERATE=0.0027;THETA=0.0036;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 142724451 . TG T 107 PASS INDEL;BAVGPOST=0.990;BRSQ=0.418;LDAF=0.0075;AVGPOST=0.9922;RSQ=0.5880;ERATE=0.0007;THETA=0.0018;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 142724964 . AG A 71 PASS INDEL;BAVGPOST=0.958;BRSQ=0.154;LDAF=0.0187;AVGPOST=0.9749;RSQ=0.5113;ERATE=0.0014;THETA=0.0063;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 142725274 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.5569;ERATE=0.0005;THETA=0.0029;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142725371 . ACT A 88 PASS INDEL;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0019;AVGPOST=0.9983;RSQ=0.6658;ERATE=0.0005;THETA=0.0039;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 142725560 . GA G 49 PASS INDEL;BAVGPOST=0.998;BRSQ=0.502;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142726168 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142726232 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.807;BRSQ=0.741;LDAF=0.4378;AVGPOST=0.8451;RSQ=0.8128;ERATE=0.0008;THETA=0.0061;AC=988;AN=2184 GT:DS:GL:BD 0.45238096 0 1 142726556 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0004;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142726624 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9400;ERATE=0.0004;THETA=0.0031;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 142726858 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0187;AVGPOST=0.9981;RSQ=0.9583;ERATE=0.0004;THETA=0.0013;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 142727012 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0052;AVGPOST=0.9989;RSQ=0.9131;ERATE=0.0019;THETA=0.0031;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 142727244 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0052;AVGPOST=0.9989;RSQ=0.9287;ERATE=0.0007;THETA=0.0039;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 142727471 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4347;ERATE=0.0006;THETA=0.0078;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142727511 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.871;LDAF=0.0027;AVGPOST=0.9986;RSQ=0.7708;ERATE=0.0006;THETA=0.0047;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 142727533 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0042;AVGPOST=0.9995;RSQ=0.9441;ERATE=0.0004;THETA=0.0025;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 142727557 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.728;LDAF=0.0310;AVGPOST=0.9794;RSQ=0.7051;ERATE=0.0019;THETA=0.0017;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 142727727 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.885;LDAF=0.0112;AVGPOST=0.9963;RSQ=0.8580;ERATE=0.0005;THETA=0.0072;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 142728364 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.958;BRSQ=0.938;LDAF=0.5121;AVGPOST=0.9358;RSQ=0.9150;ERATE=0.0051;THETA=0.0135;AC=1128;AN=2184 GT:DS:GL:BD 0.51648355 1 1 142728491 . CCT C 153 PASS INDEL;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0034;AVGPOST=0.9960;RSQ=0.5113;ERATE=0.0007;THETA=0.0123;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 142728756 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.953;BRSQ=0.708;LDAF=0.0810;AVGPOST=0.9572;RSQ=0.7622;ERATE=0.0011;THETA=0.0222;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 142728763 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.496;LDAF=0.0017;AVGPOST=0.9980;RSQ=0.4709;ERATE=0.0007;THETA=0.0068;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142728856 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.805;LDAF=0.0616;AVGPOST=0.9701;RSQ=0.7973;ERATE=0.0022;THETA=0.0097;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 142728936 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.921;BRSQ=0.841;LDAF=0.6221;AVGPOST=0.8762;RSQ=0.7851;ERATE=0.0026;THETA=0.0102;AC=1363;AN=2184 GT:DS:GL:BD 0.62408423 1 1 142728944 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.377;LDAF=0.9963;AVGPOST=0.9938;RSQ=0.2415;ERATE=0.0011;THETA=0.0266;AC=2182;AN=2184 GT:DS:GL:BD 0.99908423 1 1 142729763 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.918;BRSQ=0.724;LDAF=0.8315;AVGPOST=0.8789;RSQ=0.6622;ERATE=0.0069;THETA=0.0100;AC=1888;AN=2184 GT:DS:GL:BD 0.86446887 1 1 142729769 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.923;BRSQ=0.509;LDAF=0.0952;AVGPOST=0.9091;RSQ=0.5380;ERATE=0.0129;THETA=0.0223;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 142730319 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.451;LDAF=0.0032;AVGPOST=0.9949;RSQ=0.4033;ERATE=0.0009;THETA=0.0347;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142730653 . TC T 689 PASS INDEL;BAVGPOST=0.996;BRSQ=0.873;LDAF=0.0102;AVGPOST=0.9936;RSQ=0.7194;ERATE=0.0009;THETA=0.0194;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 142730657 . CA C 285 PASS INDEL;BAVGPOST=0.977;BRSQ=0.524;LDAF=0.0371;AVGPOST=0.9587;RSQ=0.4940;ERATE=0.0062;THETA=0.0218;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 142730718 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.881;LDAF=0.0087;AVGPOST=0.9967;RSQ=0.8285;ERATE=0.0006;THETA=0.0458;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 142730849 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.719;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5081;ERATE=0.0004;THETA=0.0485;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142730994 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.853;BRSQ=0.377;LDAF=0.1110;AVGPOST=0.8695;RSQ=0.4400;ERATE=0.0030;THETA=0.0456;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 142781369 rs71211774 TAAG T 4416 PASS INDEL;BAVGPOST=0.942;BRSQ=0.508;LDAF=0.0735;AVGPOST=0.9287;RSQ=0.5124;ERATE=0.0102;THETA=0.0355;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 142787037 rs111631612 CT C 79 PASS INDEL;BAVGPOST=0.963;BRSQ=0.321;LDAF=0.0171;AVGPOST=0.9776;RSQ=0.4758;ERATE=0.0007;THETA=0.0634;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 142787261 . TC T 596 PASS INDEL;BAVGPOST=0.997;BRSQ=0.821;LDAF=0.0105;AVGPOST=0.9928;RSQ=0.6979;ERATE=0.0030;THETA=0.0144;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 142792604 . TG T 10 PASS INDEL;BAVGPOST=0.997;BRSQ=0.331;LDAF=0.0026;AVGPOST=0.9961;RSQ=0.3553;ERATE=0.0004;THETA=0.0204;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142798435 . A AT 514 PASS INDEL;BAVGPOST=0.985;BRSQ=0.573;LDAF=0.0197;AVGPOST=0.9824;RSQ=0.5912;ERATE=0.0034;THETA=0.0262;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 142800155 . TTC T 361 PASS INDEL;BAVGPOST=0.904;BRSQ=0.173;LDAF=0.0835;AVGPOST=0.8621;RSQ=0.1990;ERATE=0.0082;THETA=0.0309;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 142800474 . A AT 1679 PASS INDEL;BAVGPOST=0.798;BRSQ=0.271;LDAF=0.1929;AVGPOST=0.7685;RSQ=0.3393;ERATE=0.0248;THETA=0.0336;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 142800699 . C CA 603 PASS INDEL;BAVGPOST=0.992;BRSQ=0.734;LDAF=0.0183;AVGPOST=0.9862;RSQ=0.6656;ERATE=0.0047;THETA=0.0529;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 142801308 . TGAC T 169 PASS INDEL;BAVGPOST=0.992;BRSQ=0.644;LDAF=0.0111;AVGPOST=0.9924;RSQ=0.6793;ERATE=0.0024;THETA=0.0313;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 142801311 . C CACATT 9848 PASS INDEL;BAVGPOST=0.872;BRSQ=0.467;LDAF=0.1397;AVGPOST=0.8856;RSQ=0.6100;ERATE=0.0133;THETA=0.0314;AC=188;AN=2184 GT:DS:GL:BD 0.08608059 0 1 142801604 . TA T 306 PASS INDEL;BAVGPOST=0.992;BRSQ=0.675;LDAF=0.0139;AVGPOST=0.9890;RSQ=0.6738;ERATE=0.0026;THETA=0.0340;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 142807094 . TTA T 102 PASS INDEL;BAVGPOST=0.992;BRSQ=0.597;LDAF=0.0107;AVGPOST=0.9892;RSQ=0.5319;ERATE=0.0027;THETA=0.0064;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 142807651 . A ATCAT 5518 PASS INDEL;BAVGPOST=0.906;BRSQ=0.448;LDAF=0.1184;AVGPOST=0.8766;RSQ=0.4503;ERATE=0.0146;THETA=0.0269;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 142809179 . A AT 1734 PASS INDEL;BAVGPOST=0.949;BRSQ=0.584;LDAF=0.0747;AVGPOST=0.9399;RSQ=0.6108;ERATE=0.0104;THETA=0.0378;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 142809369 . C CA 380 PASS INDEL;BAVGPOST=0.859;BRSQ=0.075;LDAF=0.1678;AVGPOST=0.7198;RSQ=0.1101;ERATE=0.0219;THETA=0.0145;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 142810478 . GC G 567 PASS INDEL;BAVGPOST=0.995;BRSQ=0.737;LDAF=0.0101;AVGPOST=0.9939;RSQ=0.7330;ERATE=0.0030;THETA=0.0495;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 142810716 . T TA 243 PASS INDEL;BAVGPOST=0.981;BRSQ=0.539;LDAF=0.0268;AVGPOST=0.9698;RSQ=0.4605;ERATE=0.0064;THETA=0.0129;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 142810876 . C CT 215 PASS INDEL;BAVGPOST=0.974;BRSQ=0.694;LDAF=0.0202;AVGPOST=0.9900;RSQ=0.7837;ERATE=0.0007;THETA=0.0285;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 142811071 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.781;BRSQ=0.640;LDAF=0.4512;AVGPOST=0.8241;RSQ=0.6914;ERATE=0.0132;THETA=0.0258;AC=1001;AN=2184 GT:DS:GL:BD 0.45833334 0 1 142812790 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.816;BRSQ=0.492;LDAF=0.1876;AVGPOST=0.8499;RSQ=0.6161;ERATE=0.0161;THETA=0.0073;AC=284;AN=2184 GT:DS:GL:BD 0.13003664 0 1 142812793 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.505;LDAF=0.0214;AVGPOST=0.9849;RSQ=0.7187;ERATE=0.0009;THETA=0.0361;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 142816164 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.509;LDAF=0.0040;AVGPOST=0.9948;RSQ=0.3914;ERATE=0.0009;THETA=0.0224;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 142819364 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.576;LDAF=0.0116;AVGPOST=0.9901;RSQ=0.6252;ERATE=0.0045;THETA=0.0239;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 142819441 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.859;BRSQ=0.439;LDAF=0.1507;AVGPOST=0.8609;RSQ=0.5676;ERATE=0.0113;THETA=0.0096;AC=197;AN=2184 GT:DS:GL:BD 0.09020147 0 1 142822563 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.422;LDAF=0.9669;AVGPOST=0.9591;RSQ=0.5038;ERATE=0.0032;THETA=0.0159;AC=2150;AN=2184 GT:DS:GL:BD 0.98443222 1 1 142822886 . AT A 9412 PASS INDEL;BAVGPOST=0.741;BRSQ=0.573;LDAF=0.3025;AVGPOST=0.7866;RSQ=0.6142;ERATE=0.0073;THETA=0.0135;AC=588;AN=2184 GT:DS:GL:BD 0.26923078 0 1 142823437 . G GA 674 PASS INDEL;BAVGPOST=0.950;BRSQ=0.262;LDAF=0.0501;AVGPOST=0.9225;RSQ=0.2631;ERATE=0.0062;THETA=0.0116;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 142823570 . A AG 3885 PASS INDEL;BAVGPOST=0.545;BRSQ=0.181;LDAF=0.4631;AVGPOST=0.6191;RSQ=0.3435;ERATE=0.0022;THETA=0.0118;AC=882;AN=2184 GT:DS:GL:BD 0.40384614 0 1 142823571 . G GGT 3230 PASS INDEL;BAVGPOST=0.545;BRSQ=0.184;LDAF=0.4602;AVGPOST=0.6117;RSQ=0.3194;ERATE=0.0042;THETA=0.0212;AC=887;AN=2184 GT:DS:GL:BD 0.40613553 0 1 142824832 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.955;BRSQ=0.466;LDAF=0.0540;AVGPOST=0.9328;RSQ=0.4384;ERATE=0.0069;THETA=0.0163;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 142826589 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.932;BRSQ=0.262;LDAF=0.0754;AVGPOST=0.8835;RSQ=0.2811;ERATE=0.0117;THETA=0.0186;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 142826652 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.845;BRSQ=0.297;LDAF=0.1318;AVGPOST=0.8550;RSQ=0.5112;ERATE=0.0044;THETA=0.0011;AC=163;AN=2184 GT:DS:GL:BD 0.07463370 0 1 142826685 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.634;LDAF=0.0040;AVGPOST=0.9947;RSQ=0.4279;ERATE=0.0015;THETA=0.0049;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 142826804 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.638;LDAF=0.0072;AVGPOST=0.9914;RSQ=0.4397;ERATE=0.0026;THETA=0.0212;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 142827572 . A AT 729 PASS INDEL;BAVGPOST=0.883;BRSQ=0.293;LDAF=0.1186;AVGPOST=0.8430;RSQ=0.3286;ERATE=0.0171;THETA=0.0158;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 142830400 . A ACTT 227 PASS INDEL;BAVGPOST=0.926;BRSQ=0.075;LDAF=0.0900;AVGPOST=0.8404;RSQ=0.1662;ERATE=0.0079;THETA=0.0138;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 142831587 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.617;LDAF=0.0109;AVGPOST=0.9857;RSQ=0.4121;ERATE=0.0009;THETA=0.0117;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 142833203 . TC T 209 PASS INDEL;BAVGPOST=0.994;BRSQ=0.432;LDAF=0.0071;AVGPOST=0.9910;RSQ=0.4257;ERATE=0.0016;THETA=0.0156;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 142833802 . CAG C 18 PASS INDEL;BAVGPOST=0.995;BRSQ=0.422;LDAF=0.0059;AVGPOST=0.9916;RSQ=0.3289;ERATE=0.0020;THETA=0.0168;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 142837549 . C CT 147 PASS INDEL;BAVGPOST=0.993;BRSQ=0.504;LDAF=0.0082;AVGPOST=0.9908;RSQ=0.5608;ERATE=0.0012;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 142838776 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.666;LDAF=0.0024;AVGPOST=0.9958;RSQ=0.2097;ERATE=0.0007;THETA=0.0142;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142840967 . CTAAG C 144 PASS INDEL;BAVGPOST=0.978;BRSQ=0.344;LDAF=0.0334;AVGPOST=0.9462;RSQ=0.2453;ERATE=0.0041;THETA=0.0123;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 142844059 . A AG 76 PASS INDEL;BAVGPOST=0.973;BRSQ=0.242;LDAF=0.0327;AVGPOST=0.9495;RSQ=0.3575;ERATE=0.0024;THETA=0.0099;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 142844268 . G GCCTATTAT 79 PASS INDEL;BAVGPOST=0.575;BRSQ=0.001;LDAF=0.1724;AVGPOST=0.6989;RSQ=0.0676;ERATE=0.0103;THETA=0.0170;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142846351 . AC A 81 PASS INDEL;BAVGPOST=0.927;BRSQ=0.083;LDAF=0.0237;AVGPOST=0.9607;RSQ=0.2311;ERATE=0.0039;THETA=0.0124;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 142850048 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.385;LDAF=0.0053;AVGPOST=0.9915;RSQ=0.2632;ERATE=0.0015;THETA=0.0119;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 142850256 . TG T 103 PASS INDEL;BAVGPOST=0.871;BRSQ=0.038;LDAF=0.0507;AVGPOST=0.9074;RSQ=0.1452;ERATE=0.0068;THETA=0.0072;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 142853465 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.862;BRSQ=0.523;LDAF=0.2198;AVGPOST=0.8671;RSQ=0.6425;ERATE=0.0100;THETA=0.0142;AC=377;AN=2184 GT:DS:GL:BD 0.17261904 0 1 142853729 . G GA 104 PASS INDEL;BAVGPOST=0.997;BRSQ=0.319;LDAF=0.0020;AVGPOST=0.9969;RSQ=0.3017;ERATE=0.0008;THETA=0.0056;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142853778 . T TG 16 PASS INDEL;BAVGPOST=0.997;BRSQ=0.461;LDAF=0.0026;AVGPOST=0.9968;RSQ=0.4418;ERATE=0.0007;THETA=0.0141;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142853802 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.359;LDAF=0.0320;AVGPOST=0.9552;RSQ=0.4279;ERATE=0.0018;THETA=0.0108;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 142853804 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.286;LDAF=0.0075;AVGPOST=0.9876;RSQ=0.2880;ERATE=0.0013;THETA=0.0047;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 142853868 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.617;LDAF=0.0048;AVGPOST=0.9946;RSQ=0.5187;ERATE=0.0016;THETA=0.0103;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 142853876 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.953;BRSQ=0.542;LDAF=0.0535;AVGPOST=0.9509;RSQ=0.6000;ERATE=0.0104;THETA=0.0143;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 142854283 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.434;LDAF=0.0322;AVGPOST=0.9665;RSQ=0.5931;ERATE=0.0017;THETA=0.0199;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 142854315 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.669;LDAF=0.0134;AVGPOST=0.9905;RSQ=0.6763;ERATE=0.0018;THETA=0.0146;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 142854342 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.833;BRSQ=0.461;LDAF=0.1755;AVGPOST=0.8494;RSQ=0.6013;ERATE=0.0117;THETA=0.0109;AC=286;AN=2184 GT:DS:GL:BD 0.13095239 0 1 142854356 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.344;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.3544;ERATE=0.0005;THETA=0.0139;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142854380 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.876;BRSQ=0.351;LDAF=0.1029;AVGPOST=0.8880;RSQ=0.5364;ERATE=0.0022;THETA=0.0086;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 142856380 . AT A 19 PASS INDEL;BAVGPOST=0.848;BRSQ=0.020;LDAF=0.1152;AVGPOST=0.7921;RSQ=0.0928;ERATE=0.0063;THETA=0.0084;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 142856940 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.271;LDAF=0.0191;AVGPOST=0.9757;RSQ=0.4999;ERATE=0.0008;THETA=0.0176;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 142856963 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.443;LDAF=0.0016;AVGPOST=0.9971;RSQ=0.1960;ERATE=0.0007;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142856997 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.539;LDAF=0.0093;AVGPOST=0.9864;RSQ=0.3814;ERATE=0.0013;THETA=0.0149;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 142856998 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.259;LDAF=0.0199;AVGPOST=0.9750;RSQ=0.4972;ERATE=0.0010;THETA=0.0065;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 142857460 . GA G 48 PASS INDEL;BAVGPOST=0.903;BRSQ=0.030;LDAF=0.1008;AVGPOST=0.8143;RSQ=0.0914;ERATE=0.0038;THETA=0.0146;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 142857673 . AAG A 165 PASS INDEL;BAVGPOST=0.846;BRSQ=0.054;LDAF=0.1436;AVGPOST=0.7544;RSQ=0.0996;ERATE=0.0149;THETA=0.0080;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 142858556 . C CT 66 PASS INDEL;BAVGPOST=0.922;BRSQ=0.232;LDAF=0.0528;AVGPOST=0.9267;RSQ=0.4295;ERATE=0.0054;THETA=0.0067;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 142858559 . T TG 92 PASS INDEL;BAVGPOST=0.967;BRSQ=0.223;LDAF=0.0280;AVGPOST=0.9621;RSQ=0.4609;ERATE=0.0010;THETA=0.0088;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 142858713 . A AT 57 PASS INDEL;BAVGPOST=0.905;BRSQ=0.026;LDAF=0.1112;AVGPOST=0.7954;RSQ=0.0953;ERATE=0.0133;THETA=0.0057;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 142859581 . GA G 99 PASS INDEL;BAVGPOST=0.914;BRSQ=0.090;LDAF=0.0853;AVGPOST=0.8494;RSQ=0.1538;ERATE=0.0100;THETA=0.0052;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 142860389 . A AT 498 PASS INDEL;BAVGPOST=0.922;BRSQ=0.305;LDAF=0.0703;AVGPOST=0.9089;RSQ=0.4319;ERATE=0.0092;THETA=0.0154;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 142860707 . A AG 379 PASS INDEL;BAVGPOST=0.995;BRSQ=0.585;LDAF=0.0100;AVGPOST=0.9873;RSQ=0.4323;ERATE=0.0024;THETA=0.0175;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 142862990 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.751;BRSQ=0.452;LDAF=0.3176;AVGPOST=0.7952;RSQ=0.6071;ERATE=0.0036;THETA=0.0209;AC=577;AN=2184 GT:DS:GL:BD 0.26419413 0 1 142863598 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.947;BRSQ=0.344;LDAF=0.0676;AVGPOST=0.9058;RSQ=0.4220;ERATE=0.0071;THETA=0.0213;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 142863616 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.289;LDAF=0.0127;AVGPOST=0.9802;RSQ=0.3406;ERATE=0.0011;THETA=0.0093;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 142863631 . G GA 107 PASS INDEL;BAVGPOST=0.957;BRSQ=0.424;LDAF=0.0482;AVGPOST=0.9346;RSQ=0.4197;ERATE=0.0018;THETA=0.0154;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 142863633 . A AT 429 PASS INDEL;BAVGPOST=0.955;BRSQ=0.446;LDAF=0.0530;AVGPOST=0.9353;RSQ=0.4580;ERATE=0.0044;THETA=0.0164;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 142864699 . CAAAAG C 668 PASS INDEL;BAVGPOST=0.878;BRSQ=0.137;LDAF=0.1129;AVGPOST=0.8139;RSQ=0.1963;ERATE=0.0109;THETA=0.0048;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 142865820 . T TA 1168 PASS INDEL;BAVGPOST=0.966;BRSQ=0.429;LDAF=0.0442;AVGPOST=0.9396;RSQ=0.4139;ERATE=0.0073;THETA=0.0209;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 142866326 . G GA 76 PASS INDEL;BAVGPOST=0.953;BRSQ=0.129;LDAF=0.0412;AVGPOST=0.9285;RSQ=0.1809;ERATE=0.0067;THETA=0.0049;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 142867565 . CAT C 338 PASS INDEL;BAVGPOST=0.752;BRSQ=0.083;LDAF=0.1575;AVGPOST=0.7510;RSQ=0.2209;ERATE=0.0084;THETA=0.0085;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 142868174 . CA C 1604 PASS INDEL;BAVGPOST=0.928;BRSQ=0.367;LDAF=0.0742;AVGPOST=0.9045;RSQ=0.3872;ERATE=0.0056;THETA=0.0211;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 142868845 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.456;LDAF=0.0031;AVGPOST=0.9950;RSQ=0.2600;ERATE=0.0011;THETA=0.0038;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142870401 . GA G 497 PASS INDEL;BAVGPOST=0.882;BRSQ=0.404;LDAF=0.1225;AVGPOST=0.8773;RSQ=0.5371;ERATE=0.0139;THETA=0.0174;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 142870587 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.440;LDAF=0.0050;AVGPOST=0.9934;RSQ=0.4066;ERATE=0.0007;THETA=0.0129;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 142870666 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.238;LDAF=0.0290;AVGPOST=0.9560;RSQ=0.3772;ERATE=0.0037;THETA=0.0046;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 142871971 . G GT 129 PASS INDEL;BAVGPOST=0.783;BRSQ=0.028;LDAF=0.1077;AVGPOST=0.8063;RSQ=0.0982;ERATE=0.0056;THETA=0.0033;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 142872404 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.252;LDAF=0.0131;AVGPOST=0.9803;RSQ=0.3493;ERATE=0.0049;THETA=0.0035;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 142872424 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.954;BRSQ=0.344;LDAF=0.0369;AVGPOST=0.9521;RSQ=0.4150;ERATE=0.0067;THETA=0.0121;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 142872448 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.333;LDAF=0.0169;AVGPOST=0.9719;RSQ=0.2800;ERATE=0.0030;THETA=0.0034;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 142872456 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.281;LDAF=0.0133;AVGPOST=0.9759;RSQ=0.2207;ERATE=0.0024;THETA=0.0021;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 142872831 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.246;LDAF=0.0254;AVGPOST=0.9595;RSQ=0.3656;ERATE=0.0022;THETA=0.0089;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 142873260 . CT C 27 PASS INDEL;BAVGPOST=0.988;BRSQ=0.289;LDAF=0.0159;AVGPOST=0.9754;RSQ=0.2991;ERATE=0.0015;THETA=0.0087;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 142873603 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.342;LDAF=0.0120;AVGPOST=0.9824;RSQ=0.3502;ERATE=0.0023;THETA=0.0109;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 142873998 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.443;BRSQ=0.040;LDAF=0.6844;AVGPOST=0.5730;RSQ=0.1403;ERATE=0.0303;THETA=0.0190;AC=1878;AN=2184 GT:DS:GL:BD 0.85989010 1 1 142874178 . GCA G 548 PASS INDEL;BAVGPOST=0.756;BRSQ=0.050;LDAF=0.1703;AVGPOST=0.7149;RSQ=0.1367;ERATE=0.0148;THETA=0.0257;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 142874326 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.798;BRSQ=0.531;LDAF=0.2605;AVGPOST=0.8315;RSQ=0.6485;ERATE=0.0066;THETA=0.0217;AC=458;AN=2184 GT:DS:GL:BD 0.20970696 0 1 142874336 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.684;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5266;ERATE=0.0005;THETA=0.0130;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142875783 . AGT A 568 PASS INDEL;BAVGPOST=0.557;BRSQ=0.035;LDAF=0.2820;AVGPOST=0.5845;RSQ=0.1123;ERATE=0.0282;THETA=0.0061;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 142876067 . GAA G 900 PASS INDEL;BAVGPOST=0.989;BRSQ=0.684;LDAF=0.0205;AVGPOST=0.9862;RSQ=0.6883;ERATE=0.0050;THETA=0.0191;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 142876512 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.925;BRSQ=0.384;LDAF=0.0744;AVGPOST=0.9181;RSQ=0.5628;ERATE=0.0018;THETA=0.0135;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 142885060 . C CA 59 PASS INDEL;BAVGPOST=0.985;BRSQ=0.374;LDAF=0.0182;AVGPOST=0.9733;RSQ=0.3089;ERATE=0.0040;THETA=0.0083;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 142887230 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.526;LDAF=0.0037;AVGPOST=0.9952;RSQ=0.4409;ERATE=0.0012;THETA=0.0174;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 142889165 . TTAAC T 77 PASS INDEL;BAVGPOST=0.988;BRSQ=0.333;LDAF=0.0200;AVGPOST=0.9659;RSQ=0.2075;ERATE=0.0033;THETA=0.0071;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 142889482 . CTTTCCTT C 249 PASS INDEL;BAVGPOST=0.885;BRSQ=0.011;LDAF=0.0490;AVGPOST=0.9069;RSQ=0.0983;ERATE=0.0019;THETA=0.0053;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 142891342 . G GT 65 PASS INDEL;BAVGPOST=0.446;BRSQ=0.015;LDAF=0.2589;AVGPOST=0.5922;RSQ=0.0807;ERATE=0.0192;THETA=0.0097;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 142893636 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.757;BRSQ=0.470;LDAF=0.3902;AVGPOST=0.7762;RSQ=0.5754;ERATE=0.0052;THETA=0.0134;AC=739;AN=2184 GT:DS:GL:BD 0.33836997 0 1 142893797 . AC A 740 PASS INDEL;BAVGPOST=0.634;BRSQ=0.063;LDAF=0.2133;AVGPOST=0.6723;RSQ=0.1604;ERATE=0.0159;THETA=0.0079;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 142895441 . CA C 593 PASS INDEL;BAVGPOST=0.522;BRSQ=0.037;LDAF=0.2019;AVGPOST=0.6843;RSQ=0.1584;ERATE=0.0076;THETA=0.0124;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 142896279 . GA G 1073 PASS INDEL;BAVGPOST=0.680;BRSQ=0.106;LDAF=0.1821;AVGPOST=0.7256;RSQ=0.2072;ERATE=0.0063;THETA=0.0166;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 142896767 . AC A 60 PASS INDEL;BAVGPOST=0.913;BRSQ=0.095;LDAF=0.0701;AVGPOST=0.8759;RSQ=0.1448;ERATE=0.0082;THETA=0.0311;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 142899233 . CT C 78 PASS INDEL;BAVGPOST=0.665;BRSQ=0.013;LDAF=0.1516;AVGPOST=0.7327;RSQ=0.0824;ERATE=0.0093;THETA=0.0217;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 142900098 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.378;LDAF=0.0131;AVGPOST=0.9817;RSQ=0.3883;ERATE=0.0014;THETA=0.0203;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 142907895 . A AT 1200 PASS INDEL;BAVGPOST=0.613;BRSQ=0.077;LDAF=0.2637;AVGPOST=0.6217;RSQ=0.1524;ERATE=0.0178;THETA=0.0140;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 142909874 . A AG 90 PASS INDEL;BAVGPOST=0.716;BRSQ=0.012;LDAF=0.2024;AVGPOST=0.6570;RSQ=0.0723;ERATE=0.0214;THETA=0.0082;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 142913583 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.901;BRSQ=0.421;LDAF=0.1079;AVGPOST=0.8788;RSQ=0.4641;ERATE=0.0122;THETA=0.0135;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 142913657 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.540;LDAF=0.0193;AVGPOST=0.9846;RSQ=0.6676;ERATE=0.0007;THETA=0.0220;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 142913689 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.940;BRSQ=0.743;LDAF=0.1465;AVGPOST=0.9358;RSQ=0.7831;ERATE=0.0059;THETA=0.0196;AC=274;AN=2184 GT:DS:GL:BD 0.12545788 0 1 142913713 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.750;LDAF=0.0033;AVGPOST=0.9977;RSQ=0.7185;ERATE=0.0013;THETA=0.0080;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 142913728 . A AT 141 PASS INDEL;BAVGPOST=0.995;BRSQ=0.475;LDAF=0.0069;AVGPOST=0.9919;RSQ=0.5417;ERATE=0.0016;THETA=0.0215;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 142913784 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.582;LDAF=0.0225;AVGPOST=0.9787;RSQ=0.6329;ERATE=0.0052;THETA=0.0341;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 142913787 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7443;ERATE=0.0005;THETA=0.0194;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 142914088 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.656;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7040;ERATE=0.0007;THETA=0.0036;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 142914245 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0014;AVGPOST=0.9977;RSQ=0.2758;ERATE=0.0006;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142914301 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.534;LDAF=0.0045;AVGPOST=0.9947;RSQ=0.5305;ERATE=0.0017;THETA=0.0194;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 142914748 . GC G 247 PASS INDEL;BAVGPOST=0.999;BRSQ=0.800;LDAF=0.0033;AVGPOST=0.9978;RSQ=0.6759;ERATE=0.0015;THETA=0.0192;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 142914884 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.565;LDAF=0.0260;AVGPOST=0.9836;RSQ=0.7459;ERATE=0.0005;THETA=0.0152;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 142915407 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.595;LDAF=0.0340;AVGPOST=0.9728;RSQ=0.6681;ERATE=0.0020;THETA=0.0061;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 142915418 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0005;THETA=0.0241;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142915464 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.890;BRSQ=0.621;LDAF=0.1913;AVGPOST=0.8919;RSQ=0.7132;ERATE=0.0126;THETA=0.0048;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 142915517 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.677;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.5496;ERATE=0.0007;THETA=0.0129;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142915561 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.658;LDAF=0.0032;AVGPOST=0.9972;RSQ=0.6441;ERATE=0.0007;THETA=0.0143;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 142915567 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.485;LDAF=0.0331;AVGPOST=0.9640;RSQ=0.5616;ERATE=0.0035;THETA=0.0103;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 142915715 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.381;LDAF=0.0250;AVGPOST=0.9672;RSQ=0.4857;ERATE=0.0021;THETA=0.0220;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 142915949 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.932;BRSQ=0.622;LDAF=0.1181;AVGPOST=0.9115;RSQ=0.6266;ERATE=0.0109;THETA=0.0107;AC=170;AN=2184 GT:DS:GL:BD 0.07783883 0 1 142915968 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.509;LDAF=0.0104;AVGPOST=0.9867;RSQ=0.4758;ERATE=0.0007;THETA=0.0034;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 142916021 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6252;ERATE=0.0004;THETA=0.0069;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142916035 . AT A 208 PASS INDEL;BAVGPOST=0.989;BRSQ=0.659;LDAF=0.0147;AVGPOST=0.9883;RSQ=0.6501;ERATE=0.0041;THETA=0.0229;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 142916342 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.502;LDAF=0.0145;AVGPOST=0.9896;RSQ=0.7205;ERATE=0.0008;THETA=0.0168;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 142916442 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.688;LDAF=0.0140;AVGPOST=0.9941;RSQ=0.8203;ERATE=0.0010;THETA=0.0123;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 142916463 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.749;LDAF=0.0082;AVGPOST=0.9937;RSQ=0.6628;ERATE=0.0018;THETA=0.0351;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 142916952 . GTTTT G 131 PASS INDEL;BAVGPOST=0.986;BRSQ=0.282;LDAF=0.0158;AVGPOST=0.9741;RSQ=0.2486;ERATE=0.0021;THETA=0.0090;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 142917402 . A AAC 2391 PASS INDEL;BAVGPOST=0.915;BRSQ=0.462;LDAF=0.1012;AVGPOST=0.8994;RSQ=0.5002;ERATE=0.0123;THETA=0.0096;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 142917859 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.449;LDAF=0.0103;AVGPOST=0.9892;RSQ=0.5199;ERATE=0.0011;THETA=0.0096;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 142919083 . A AT 221 PASS INDEL;BAVGPOST=0.370;BRSQ=0.013;LDAF=0.2296;AVGPOST=0.6298;RSQ=0.0977;ERATE=0.0086;THETA=0.0204;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 142919704 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.245;LDAF=0.0095;AVGPOST=0.9874;RSQ=0.4622;ERATE=0.0008;THETA=0.0178;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 142919716 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.836;BRSQ=0.615;LDAF=0.2614;AVGPOST=0.8498;RSQ=0.6946;ERATE=0.0032;THETA=0.0047;AC=489;AN=2184 GT:DS:GL:BD 0.22390109 0 1 142919720 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.833;BRSQ=0.624;LDAF=0.2592;AVGPOST=0.8434;RSQ=0.6820;ERATE=0.0023;THETA=0.0186;AC=478;AN=2184 GT:DS:GL:BD 0.21886447 0 1 142919726 . T TG 4808 PASS INDEL;BAVGPOST=0.827;BRSQ=0.537;LDAF=0.2177;AVGPOST=0.8314;RSQ=0.6289;ERATE=0.0018;THETA=0.0191;AC=396;AN=2184 GT:DS:GL:BD 0.18131869 0 1 142919777 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.437;LDAF=0.0045;AVGPOST=0.9917;RSQ=0.1890;ERATE=0.0007;THETA=0.0146;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 142919778 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.899;BRSQ=0.326;LDAF=0.0695;AVGPOST=0.9182;RSQ=0.5067;ERATE=0.0028;THETA=0.0252;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 142920074 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.834;BRSQ=0.427;LDAF=0.1652;AVGPOST=0.8415;RSQ=0.5459;ERATE=0.0112;THETA=0.0130;AC=240;AN=2184 GT:DS:GL:BD 0.10989011 0 1 142920159 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.856;BRSQ=0.366;LDAF=0.1229;AVGPOST=0.8687;RSQ=0.5227;ERATE=0.0032;THETA=0.0095;AC=169;AN=2184 GT:DS:GL:BD 0.07738096 0 1 142920287 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.820;BRSQ=0.533;LDAF=0.2372;AVGPOST=0.8332;RSQ=0.6322;ERATE=0.0171;THETA=0.0202;AC=402;AN=2184 GT:DS:GL:BD 0.18406594 0 1 142921180 . ATAAAT A 2117 PASS INDEL;BAVGPOST=0.343;BRSQ=0.017;LDAF=0.7591;AVGPOST=0.6148;RSQ=0.0932;ERATE=0.0168;THETA=0.0290;AC=2127;AN=2184 GT:DS:GL:BD 0.97390109 1 1 142922418 . AAG A 67 PASS INDEL;BAVGPOST=0.983;BRSQ=0.363;LDAF=0.0149;AVGPOST=0.9798;RSQ=0.3662;ERATE=0.0018;THETA=0.0271;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 142924002 . TTA T 86 PASS INDEL;BAVGPOST=0.633;BRSQ=0.010;LDAF=0.1503;AVGPOST=0.7348;RSQ=0.0812;ERATE=0.0079;THETA=0.0379;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 142925537 . GT G 497 PASS INDEL;BAVGPOST=0.464;BRSQ=0.044;LDAF=0.3169;AVGPOST=0.5707;RSQ=0.1512;ERATE=0.0099;THETA=0.0143;AC=211;AN=2184 GT:DS:GL:BD 0.09661172 0 1 142925763 MERGED_DEL_2_5148 A . . SV;BAVGPOST=1.000;BRSQ=0;LDAF=0.0008;AVGPOST=0.9983;RSQ=0.1459;ERATE=0.0006;THETA=0.0297;CIEND=-10,25;CIPOS=-25,9;END=143502338;SOURCE=EMBLdelly_142925763_143502338;SVTYPE=DEL;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 142934117 . ATC A 135 PASS INDEL;BAVGPOST=0.463;BRSQ=0.009;LDAF=0.1633;AVGPOST=0.7155;RSQ=0.0809;ERATE=0.0136;THETA=0.0173;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 142937733 . AC A 55 PASS INDEL;BAVGPOST=0.500;BRSQ=0.001;LDAF=0.1158;AVGPOST=0.7878;RSQ=0.0649;ERATE=0.0066;THETA=0.0244;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 142938282 . AG A 19 PASS INDEL;BAVGPOST=0.774;BRSQ=0.002;LDAF=0.1585;AVGPOST=0.7190;RSQ=0.0715;ERATE=0.0066;THETA=0.0164;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 142945349 . TC T 371 PASS INDEL;BAVGPOST=0.486;BRSQ=0.018;LDAF=0.2710;AVGPOST=0.5888;RSQ=0.0822;ERATE=0.0185;THETA=0.0219;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 142945764 . AG A 38 PASS INDEL;BAVGPOST=0.837;BRSQ=0.018;LDAF=0.1393;AVGPOST=0.7473;RSQ=0.0836;ERATE=0.0090;THETA=0.0084;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 142947029 . C CA 34 PASS INDEL;BAVGPOST=0.633;BRSQ=0.006;LDAF=0.1779;AVGPOST=0.6899;RSQ=0.0714;ERATE=0.0108;THETA=0.0303;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 142948760 . A AT 343 PASS INDEL;BAVGPOST=0.497;BRSQ=0.012;LDAF=0.2635;AVGPOST=0.5881;RSQ=0.0735;ERATE=0.0184;THETA=0.0071;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 142948881 . AC A 27 PASS INDEL;BAVGPOST=0.810;BRSQ=0.012;LDAF=0.0515;AVGPOST=0.9032;RSQ=0.0895;ERATE=0.0029;THETA=0.0307;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 142950802 . AAC A 75 PASS INDEL;BAVGPOST=0.676;BRSQ=0.007;LDAF=0.1640;AVGPOST=0.7090;RSQ=0.0751;ERATE=0.0093;THETA=0.0456;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 142953004 . A ATT 852 PASS INDEL;BAVGPOST=0.556;BRSQ=0.037;LDAF=0.3116;AVGPOST=0.5640;RSQ=0.1219;ERATE=0.0169;THETA=0.0271;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 142953755 . TA T 83 PASS INDEL;BAVGPOST=0.599;BRSQ=0.012;LDAF=0.1274;AVGPOST=0.7724;RSQ=0.0924;ERATE=0.0080;THETA=0.0219;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 142954688 . G GA 23 PASS INDEL;BAVGPOST=0.600;BRSQ=0.002;LDAF=0.1216;AVGPOST=0.7760;RSQ=0.0651;ERATE=0.0106;THETA=0.0222;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 142955538 . TC T 112 PASS INDEL;BAVGPOST=0.664;BRSQ=0.011;LDAF=0.1696;AVGPOST=0.7048;RSQ=0.0763;ERATE=0.0168;THETA=0.0178;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 142955622 . ACTAT A 323 PASS INDEL;BAVGPOST=0.524;BRSQ=0.013;LDAF=0.1740;AVGPOST=0.7050;RSQ=0.0793;ERATE=0.0149;THETA=0.0204;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 142956796 . TC T 314 PASS INDEL;BAVGPOST=0.647;BRSQ=0.020;LDAF=0.2912;AVGPOST=0.5639;RSQ=0.0863;ERATE=0.0207;THETA=0.0197;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 142957315 . TTAAG T 1437 PASS INDEL;BAVGPOST=0.994;BRSQ=0.834;LDAF=0.0173;AVGPOST=0.9945;RSQ=0.8580;ERATE=0.0024;THETA=0.0257;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 142959639 . AG A 13036 PASS INDEL;BAVGPOST=0.797;BRSQ=0.383;LDAF=0.2630;AVGPOST=0.8170;RSQ=0.5309;ERATE=0.0081;THETA=0.0336;AC=371;AN=2184 GT:DS:GL:BD 0.16987179 0 1 142961634 . G GT 213 PASS INDEL;BAVGPOST=0.982;BRSQ=0.582;LDAF=0.0255;AVGPOST=0.9751;RSQ=0.5851;ERATE=0.0050;THETA=0.0424;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 142961637 . A AT 90 PASS INDEL;BAVGPOST=0.996;BRSQ=0.685;LDAF=0.0077;AVGPOST=0.9933;RSQ=0.6088;ERATE=0.0014;THETA=0.0279;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 142961643 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.951;BRSQ=0.696;LDAF=0.0960;AVGPOST=0.9378;RSQ=0.7038;ERATE=0.0084;THETA=0.0140;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 142963753 . A AG 248 PASS INDEL;BAVGPOST=0.760;BRSQ=0.029;LDAF=0.0966;AVGPOST=0.8256;RSQ=0.1077;ERATE=0.0082;THETA=0.0085;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 142964511 . CTA C 278 PASS INDEL;BAVGPOST=0.987;BRSQ=0.288;LDAF=0.0117;AVGPOST=0.9821;RSQ=0.3111;ERATE=0.0013;THETA=0.0331;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 142966235 . AT A 376 PASS INDEL;BAVGPOST=0.991;BRSQ=0.797;LDAF=0.0244;AVGPOST=0.9899;RSQ=0.8110;ERATE=0.0004;THETA=0.0232;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 142966237 . GAA G 644 PASS INDEL;BAVGPOST=0.991;BRSQ=0.797;LDAF=0.0250;AVGPOST=0.9889;RSQ=0.7986;ERATE=0.0009;THETA=0.0208;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 142967489 . GA G 2145 PASS INDEL;BAVGPOST=0.717;BRSQ=0.125;LDAF=0.8004;AVGPOST=0.7129;RSQ=0.2209;ERATE=0.0195;THETA=0.0241;AC=2051;AN=2184 GT:DS:GL:BD 0.93910259 1 1 142967583 . TC T 20119 PASS INDEL;BAVGPOST=0.937;BRSQ=0.254;LDAF=0.9402;AVGPOST=0.9115;RSQ=0.3180;ERATE=0.0084;THETA=0.0119;AC=2141;AN=2184 GT:DS:GL:BD 0.98031133 1 1 142967756 . G GGTTC 668 PASS INDEL;BAVGPOST=0.306;BRSQ=0.044;LDAF=0.4611;AVGPOST=0.5335;RSQ=0.1633;ERATE=0.0133;THETA=0.0244;AC=786;AN=2184 GT:DS:GL:BD 0.35989010 0 1 142967757 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.647;BRSQ=0.209;LDAF=0.3222;AVGPOST=0.6477;RSQ=0.3190;ERATE=0.0318;THETA=0.0223;AC=354;AN=2184 GT:DS:GL:BD 0.16208792 0 1 143118143 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6082;ERATE=0.0004;THETA=0.0347;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143118202 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0004;THETA=0.0383;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143118215 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.819;LDAF=0.0141;AVGPOST=0.9957;RSQ=0.8677;ERATE=0.0006;THETA=0.0398;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 143118230 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.653;LDAF=0.0050;AVGPOST=0.9962;RSQ=0.7109;ERATE=0.0007;THETA=0.0446;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 143118242 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5641;ERATE=0.0004;THETA=0.0120;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143118593 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.649;LDAF=0.0048;AVGPOST=0.9971;RSQ=0.7306;ERATE=0.0014;THETA=0.0326;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 143118681 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0270;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143118910 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.881;LDAF=0.1015;AVGPOST=0.9649;RSQ=0.8553;ERATE=0.0017;THETA=0.0334;AC=197;AN=2184 GT:DS:GL:BD 0.09020147 0 1 143118950 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6966;ERATE=0.0004;THETA=0.0078;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143119946 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0020;AVGPOST=0.9985;RSQ=0.6577;ERATE=0.0004;THETA=0.0276;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143120016 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.900;LDAF=0.2434;AVGPOST=0.9595;RSQ=0.9044;ERATE=0.0007;THETA=0.0127;AC=521;AN=2184 GT:DS:GL:BD 0.23855311 0 1 143120095 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.883;LDAF=0.0340;AVGPOST=0.9891;RSQ=0.8667;ERATE=0.0007;THETA=0.0073;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 143120124 . GA G 256 PASS INDEL;BAVGPOST=0.965;BRSQ=0.536;LDAF=0.0471;AVGPOST=0.9516;RSQ=0.5443;ERATE=0.0159;THETA=0.0033;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 143120145 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.790;LDAF=0.0189;AVGPOST=0.9915;RSQ=0.8131;ERATE=0.0011;THETA=0.0098;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 143120542 . C CA 559 PASS INDEL;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0032;AVGPOST=0.9984;RSQ=0.7834;ERATE=0.0009;THETA=0.0074;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 143120731 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.6582;ERATE=0.0006;THETA=0.0052;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143120737 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.887;LDAF=0.0133;AVGPOST=0.9954;RSQ=0.8491;ERATE=0.0005;THETA=0.0043;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 143120738 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.526;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.3927;ERATE=0.0007;THETA=0.0067;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143120862 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.913;LDAF=0.0568;AVGPOST=0.9910;RSQ=0.9316;ERATE=0.0011;THETA=0.0012;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 143120887 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.783;LDAF=0.0467;AVGPOST=0.9824;RSQ=0.8415;ERATE=0.0007;THETA=0.0011;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 143121502 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6073;ERATE=0.0004;THETA=0.0044;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143121937 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8220;ERATE=0.0004;THETA=0.0044;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143121950 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.758;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0004;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143121968 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.783;LDAF=0.9796;AVGPOST=0.9932;RSQ=0.8637;ERATE=0.0004;THETA=0.0015;AC=2145;AN=2184 GT:DS:GL:BD 0.98214287 1 1 143121975 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0004;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143122353 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0004;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143122379 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.491;LDAF=0.0087;AVGPOST=0.9889;RSQ=0.5402;ERATE=0.0036;THETA=0.0015;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 143122438 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6554;ERATE=0.0007;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143122536 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143122877 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9424;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143122924 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0008;AVGPOST=0.9989;RSQ=0.4692;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143123061 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0049;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143123062 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.921;LDAF=0.2927;AVGPOST=0.9646;RSQ=0.9200;ERATE=0.0011;THETA=0.0031;AC=639;AN=2184 GT:DS:GL:BD 0.29258242 0 1 143123125 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.815;LDAF=0.0131;AVGPOST=0.9940;RSQ=0.8302;ERATE=0.0006;THETA=0.0009;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 143123290 . AT A 2824 PASS INDEL;BAVGPOST=0.980;BRSQ=0.761;LDAF=0.0459;AVGPOST=0.9803;RSQ=0.8144;ERATE=0.0007;THETA=0.0020;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 143123393 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.749;LDAF=0.0298;AVGPOST=0.9872;RSQ=0.8112;ERATE=0.0005;THETA=0.0019;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 143123483 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.731;LDAF=0.9757;AVGPOST=0.9860;RSQ=0.7562;ERATE=0.0010;THETA=0.0043;AC=2142;AN=2184 GT:DS:GL:BD 0.98076922 1 1 143123556 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.693;LDAF=0.9609;AVGPOST=0.9731;RSQ=0.7456;ERATE=0.0008;THETA=0.0017;AC=2122;AN=2184 GT:DS:GL:BD 0.97161174 1 1 143123644 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.854;LDAF=0.0066;AVGPOST=0.9974;RSQ=0.8417;ERATE=0.0004;THETA=0.0012;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 143123781 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6620;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143123819 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.808;LDAF=0.0041;AVGPOST=0.9985;RSQ=0.8377;ERATE=0.0004;THETA=0.0012;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 143123976 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.953;BRSQ=0.470;LDAF=0.0524;AVGPOST=0.9435;RSQ=0.5324;ERATE=0.0113;THETA=0.0018;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 143124073 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.721;LDAF=0.0082;AVGPOST=0.9949;RSQ=0.7462;ERATE=0.0011;THETA=0.0021;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 143124078 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.732;LDAF=0.0025;AVGPOST=0.9976;RSQ=0.5745;ERATE=0.0011;THETA=0.0039;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143124263 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5715;ERATE=0.0008;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143124268 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143124612 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.597;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.3638;ERATE=0.0009;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143124633 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.3744;ERATE=0.0006;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143125036 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4979;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143125056 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.619;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8348;ERATE=0.0006;THETA=0.0029;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143125071 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.903;BRSQ=0.763;LDAF=0.2510;AVGPOST=0.8966;RSQ=0.7849;ERATE=0.0141;THETA=0.0034;AC=517;AN=2184 GT:DS:GL:BD 0.23672161 0 1 143125157 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.655;LDAF=0.0045;AVGPOST=0.9973;RSQ=0.7580;ERATE=0.0005;THETA=0.0020;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 143125210 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.890;BRSQ=0.693;LDAF=0.2890;AVGPOST=0.8744;RSQ=0.7053;ERATE=0.0309;THETA=0.0019;AC=570;AN=2184 GT:DS:GL:BD 0.26098901 0 1 143125340 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143125341 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5223;ERATE=0.0007;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143125348 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.6120;ERATE=0.0004;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143125366 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.761;LDAF=0.0032;AVGPOST=0.9965;RSQ=0.4993;ERATE=0.0016;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143125367 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.928;BRSQ=0.865;LDAF=0.3363;AVGPOST=0.9110;RSQ=0.8642;ERATE=0.0118;THETA=0.0015;AC=727;AN=2184 GT:DS:GL:BD 0.33287546 0 1 143125394 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.670;LDAF=0.0074;AVGPOST=0.9931;RSQ=0.6017;ERATE=0.0011;THETA=0.0027;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 143125409 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.655;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5658;ERATE=0.0006;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143125752 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7455;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143125762 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5817;ERATE=0.0004;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143125784 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.775;LDAF=0.0067;AVGPOST=0.9979;RSQ=0.8545;ERATE=0.0004;THETA=0.0026;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 143125868 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.7704;ERATE=0.0003;THETA=0.0019;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143126160 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.852;BRSQ=0.505;LDAF=0.2360;AVGPOST=0.8306;RSQ=0.5346;ERATE=0.0407;THETA=0.0024;AC=374;AN=2184 GT:DS:GL:BD 0.17124543 0 1 143126215 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.5309;ERATE=0.0007;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143126240 . CT C 61 PASS INDEL;BAVGPOST=0.999;BRSQ=0.727;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7265;ERATE=0.0005;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143126527 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5073;ERATE=0.0004;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143126555 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6584;ERATE=0.0007;THETA=0.0042;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143126659 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.755;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6145;ERATE=0.0007;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143126666 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.648;LDAF=0.0045;AVGPOST=0.9953;RSQ=0.5824;ERATE=0.0005;THETA=0.0034;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143126988 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.709;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4134;ERATE=0.0005;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143127046 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0004;THETA=0.0048;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143127097 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.772;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143127201 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.962;LDAF=0.3091;AVGPOST=0.9779;RSQ=0.9667;ERATE=0.0007;THETA=0.0016;AC=678;AN=2184 GT:DS:GL:BD 0.31043956 0 1 143127209 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.3536;ERATE=0.0005;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143127641 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.503;LDAF=0.0028;AVGPOST=0.9960;RSQ=0.3744;ERATE=0.0006;THETA=0.0024;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143127907 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.880;LDAF=0.0029;AVGPOST=0.9990;RSQ=0.8507;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 143128027 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.901;LDAF=0.0043;AVGPOST=0.9984;RSQ=0.8311;ERATE=0.0004;THETA=0.0017;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 143128113 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.945;BRSQ=0.790;LDAF=0.1564;AVGPOST=0.9547;RSQ=0.8622;ERATE=0.0008;THETA=0.0022;AC=341;AN=2184 GT:DS:GL:BD 0.15613553 0 1 143128393 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.668;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.6222;ERATE=0.0004;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143128472 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.741;LDAF=0.0086;AVGPOST=0.9937;RSQ=0.6851;ERATE=0.0022;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 143128513 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.671;LDAF=0.0022;AVGPOST=0.9976;RSQ=0.5428;ERATE=0.0005;THETA=0.0037;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143128544 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.580;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5019;ERATE=0.0006;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143128641 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.448;LDAF=0.0035;AVGPOST=0.9943;RSQ=0.3441;ERATE=0.0010;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143128799 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.716;LDAF=0.0017;AVGPOST=0.9973;RSQ=0.3464;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143128814 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.494;LDAF=0.0031;AVGPOST=0.9952;RSQ=0.3885;ERATE=0.0007;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143128907 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5771;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143128909 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.672;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5086;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143128975 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8025;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143129002 . TGAG T 406 PASS INDEL;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9013;ERATE=0.0003;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143129150 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.873;LDAF=0.0065;AVGPOST=0.9983;RSQ=0.8880;ERATE=0.0004;THETA=0.0039;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 143129211 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8075;ERATE=0.0004;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143129572 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.818;LDAF=0.0032;AVGPOST=0.9983;RSQ=0.7600;ERATE=0.0005;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 143129647 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4074;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143129702 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5854;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143129703 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7194;ERATE=0.0004;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143130009 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6272;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143130024 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.992;LDAF=0.3185;AVGPOST=0.9875;RSQ=0.9805;ERATE=0.0007;THETA=0.0007;AC=697;AN=2184 GT:DS:GL:BD 0.31913918 0 1 143130416 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.771;LDAF=0.0458;AVGPOST=0.9800;RSQ=0.8293;ERATE=0.0007;THETA=0.0014;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 143130452 . TC T 729 PASS INDEL;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0058;AVGPOST=0.9993;RSQ=0.9434;ERATE=0.0003;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 143130486 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.782;LDAF=0.0021;AVGPOST=0.9990;RSQ=0.8003;ERATE=0.0012;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143130511 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.684;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143130731 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.788;LDAF=0.0050;AVGPOST=0.9971;RSQ=0.7562;ERATE=0.0005;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 143130854 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143130923 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.763;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7175;ERATE=0.0004;THETA=0.0036;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143130930 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0006;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143130996 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.666;LDAF=0.0019;AVGPOST=0.9970;RSQ=0.4786;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143131167 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.682;LDAF=0.0021;AVGPOST=0.9980;RSQ=0.5816;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143131192 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.944;BRSQ=0.878;LDAF=0.2751;AVGPOST=0.9660;RSQ=0.9340;ERATE=0.0006;THETA=0.0013;AC=607;AN=2184 GT:DS:GL:BD 0.27793041 0 1 143131201 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.655;LDAF=0.0016;AVGPOST=0.9982;RSQ=0.5084;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143131283 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.4905;ERATE=0.0007;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143131294 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.671;LDAF=0.0044;AVGPOST=0.9967;RSQ=0.6906;ERATE=0.0007;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 143131323 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.764;LDAF=0.0888;AVGPOST=0.9595;RSQ=0.8096;ERATE=0.0007;THETA=0.0021;AC=163;AN=2184 GT:DS:GL:BD 0.07463370 0 1 143131385 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.928;BRSQ=0.867;LDAF=0.4215;AVGPOST=0.9169;RSQ=0.8588;ERATE=0.0111;THETA=0.0009;AC=898;AN=2184 GT:DS:GL:BD 0.41117215 0 1 143131466 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.644;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.3915;ERATE=0.0007;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143131486 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4444;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143131489 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.843;LDAF=0.0040;AVGPOST=0.9985;RSQ=0.8692;ERATE=0.0004;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 143131522 . AG A 57 PASS INDEL;BAVGPOST=0.990;BRSQ=0.543;LDAF=0.0169;AVGPOST=0.9785;RSQ=0.4532;ERATE=0.0056;THETA=0.0031;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 143131638 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.3852;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143131686 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.515;LDAF=0.0021;AVGPOST=0.9967;RSQ=0.3153;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143131882 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.738;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4050;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143131898 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5854;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143131908 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.3905;ERATE=0.0006;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143131937 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0043;AVGPOST=0.9984;RSQ=0.8779;ERATE=0.0005;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 143131958 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.926;BRSQ=0.629;LDAF=0.1242;AVGPOST=0.9048;RSQ=0.6292;ERATE=0.0264;THETA=0.0009;AC=207;AN=2184 GT:DS:GL:BD 0.09478022 0 1 143131979 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.950;BRSQ=0.858;LDAF=0.1920;AVGPOST=0.9643;RSQ=0.9060;ERATE=0.0013;THETA=0.0040;AC=413;AN=2184 GT:DS:GL:BD 0.18910256 0 1 143132007 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4510;ERATE=0.0004;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143132034 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5403;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143132052 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143132091 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.573;LDAF=0.0038;AVGPOST=0.9961;RSQ=0.5789;ERATE=0.0007;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143132353 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.930;BRSQ=0.826;LDAF=0.2340;AVGPOST=0.9423;RSQ=0.8814;ERATE=0.0008;THETA=0.0006;AC=513;AN=2184 GT:DS:GL:BD 0.23489010 0 1 143132368 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.934;BRSQ=0.877;LDAF=0.2875;AVGPOST=0.9490;RSQ=0.9245;ERATE=0.0028;THETA=0.0013;AC=634;AN=2184 GT:DS:GL:BD 0.29029304 0 1 143132431 . CT C 47 PASS INDEL;BAVGPOST=0.990;BRSQ=0.083;LDAF=0.1076;AVGPOST=0.8239;RSQ=0.2494;ERATE=0.0101;THETA=0.0012;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 143132513 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.705;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6208;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143132541 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.898;LDAF=0.2515;AVGPOST=0.9724;RSQ=0.9366;ERATE=0.0009;THETA=0.0018;AC=550;AN=2184 GT:DS:GL:BD 0.25183150 0 1 143132555 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143132582 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.632;LDAF=0.0045;AVGPOST=0.9970;RSQ=0.7182;ERATE=0.0005;THETA=0.0053;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 143132614 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.613;LDAF=0.0028;AVGPOST=0.9971;RSQ=0.5772;ERATE=0.0007;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143132689 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.595;LDAF=0.0024;AVGPOST=0.9970;RSQ=0.4807;ERATE=0.0007;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143132713 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.644;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4140;ERATE=0.0006;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143132728 rs71225005 GA G 26 PASS INDEL;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5216;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143132732 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.669;LDAF=0.0035;AVGPOST=0.9972;RSQ=0.6462;ERATE=0.0005;THETA=0.0060;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143132763 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.700;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4979;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143132832 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.845;LDAF=0.2365;AVGPOST=0.9634;RSQ=0.9065;ERATE=0.0013;THETA=0.0013;AC=523;AN=2184 GT:DS:GL:BD 0.23946886 0 1 143132908 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3899;ERATE=0.0007;THETA=0.0060;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143132915 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.928;BRSQ=0.789;LDAF=0.2297;AVGPOST=0.9487;RSQ=0.8776;ERATE=0.0010;THETA=0.0021;AC=509;AN=2184 GT:DS:GL:BD 0.23305860 0 1 143133101 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.476;LDAF=0.0097;AVGPOST=0.9873;RSQ=0.4808;ERATE=0.0013;THETA=0.0021;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 143133184 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.929;BRSQ=0.777;LDAF=0.2489;AVGPOST=0.9366;RSQ=0.8452;ERATE=0.0012;THETA=0.0034;AC=541;AN=2184 GT:DS:GL:BD 0.24771062 0 1 143133442 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6860;ERATE=0.0005;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143133522 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.973;LDAF=0.3136;AVGPOST=0.9845;RSQ=0.9763;ERATE=0.0007;THETA=0.0020;AC=691;AN=2184 GT:DS:GL:BD 0.31639194 0 1 143133536 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5195;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143133572 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.959;BRSQ=0.881;LDAF=0.2875;AVGPOST=0.9552;RSQ=0.8931;ERATE=0.0012;THETA=0.0027;AC=615;AN=2184 GT:DS:GL:BD 0.28159341 0 1 143133599 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.836;LDAF=0.0057;AVGPOST=0.9964;RSQ=0.7487;ERATE=0.0006;THETA=0.0036;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 143133611 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.885;LDAF=0.0187;AVGPOST=0.9958;RSQ=0.9064;ERATE=0.0022;THETA=0.0013;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 143133654 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.934;LDAF=0.2941;AVGPOST=0.9675;RSQ=0.9432;ERATE=0.0009;THETA=0.0041;AC=653;AN=2184 GT:DS:GL:BD 0.29899266 0 1 143133777 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.535;LDAF=0.0069;AVGPOST=0.9934;RSQ=0.6291;ERATE=0.0008;THETA=0.0015;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 143134057 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0045;AVGPOST=0.9987;RSQ=0.8770;ERATE=0.0006;THETA=0.0012;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 143134062 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.525;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.3899;ERATE=0.0005;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143134089 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.730;LDAF=0.0081;AVGPOST=0.9972;RSQ=0.8412;ERATE=0.0007;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 143134163 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.733;LDAF=0.0035;AVGPOST=0.9961;RSQ=0.5712;ERATE=0.0006;THETA=0.0074;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 143134359 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.879;LDAF=0.0383;AVGPOST=0.9865;RSQ=0.8523;ERATE=0.0010;THETA=0.0018;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 143134637 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.878;BRSQ=0.534;LDAF=0.1985;AVGPOST=0.8529;RSQ=0.5789;ERATE=0.0361;THETA=0.0040;AC=323;AN=2184 GT:DS:GL:BD 0.14789377 0 1 143134654 rs111591645 GA G 101 PASS INDEL;BAVGPOST=0.993;BRSQ=0.681;LDAF=0.0149;AVGPOST=0.9856;RSQ=0.6095;ERATE=0.0029;THETA=0.0053;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 143135422 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.437;LDAF=0.0042;AVGPOST=0.9935;RSQ=0.3131;ERATE=0.0020;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143135443 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0063;AVGPOST=0.9984;RSQ=0.9022;ERATE=0.0004;THETA=0.0047;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 143135471 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0064;AVGPOST=0.9983;RSQ=0.8967;ERATE=0.0006;THETA=0.0014;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 143135595 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.961;LDAF=0.3286;AVGPOST=0.9619;RSQ=0.9396;ERATE=0.0012;THETA=0.0096;AC=719;AN=2184 GT:DS:GL:BD 0.32921246 0 1 143135608 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5922;ERATE=0.0004;THETA=0.0041;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143135612 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5519;ERATE=0.0004;THETA=0.0053;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143135985 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.907;LDAF=0.0103;AVGPOST=0.9976;RSQ=0.9112;ERATE=0.0004;THETA=0.0040;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 143136010 . TA T 45 PASS INDEL;BAVGPOST=0.996;BRSQ=0.727;LDAF=0.0086;AVGPOST=0.9935;RSQ=0.6684;ERATE=0.0008;THETA=0.0141;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 143136996 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.479;LDAF=0.0177;AVGPOST=0.9781;RSQ=0.4886;ERATE=0.0046;THETA=0.0183;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 143136998 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.870;BRSQ=0.538;LDAF=0.2217;AVGPOST=0.8522;RSQ=0.5863;ERATE=0.0460;THETA=0.0143;AC=366;AN=2184 GT:DS:GL:BD 0.16758242 0 1 143137039 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0004;THETA=0.0104;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143137375 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.728;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.5867;ERATE=0.0004;THETA=0.0075;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143137538 . TC T 11305 PASS INDEL;BAVGPOST=0.977;BRSQ=0.346;LDAF=0.9726;AVGPOST=0.9611;RSQ=0.3835;ERATE=0.0053;THETA=0.0080;AC=2163;AN=2184 GT:DS:GL:BD 0.99038464 1 1 143137549 . C CT 272 PASS INDEL;BAVGPOST=0.955;BRSQ=0.434;LDAF=0.0547;AVGPOST=0.9339;RSQ=0.4463;ERATE=0.0083;THETA=0.0080;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 143138226 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.524;LDAF=0.0288;AVGPOST=0.9666;RSQ=0.5243;ERATE=0.0057;THETA=0.0022;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 143138247 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.706;LDAF=0.9715;AVGPOST=0.9773;RSQ=0.6774;ERATE=0.0011;THETA=0.0042;AC=2142;AN=2184 GT:DS:GL:BD 0.98076922 1 1 143138711 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.696;LDAF=0.0020;AVGPOST=0.9980;RSQ=0.6260;ERATE=0.0009;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143138846 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.907;LDAF=0.0353;AVGPOST=0.9916;RSQ=0.9058;ERATE=0.0005;THETA=0.0062;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 143139265 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9612;ERATE=0.0004;THETA=0.0114;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 143139297 . AT A 230 PASS INDEL;BAVGPOST=0.973;BRSQ=0.526;LDAF=0.0342;AVGPOST=0.9600;RSQ=0.5048;ERATE=0.0133;THETA=0.0175;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 143139307 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.430;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4553;ERATE=0.0006;THETA=0.0046;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143139812 . C CA 95 PASS INDEL;BAVGPOST=0.981;BRSQ=0.469;LDAF=0.0244;AVGPOST=0.9680;RSQ=0.4354;ERATE=0.0069;THETA=0.0040;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 143139820 . AC A 244 PASS INDEL;BAVGPOST=0.997;BRSQ=0.682;LDAF=0.0043;AVGPOST=0.9972;RSQ=0.7180;ERATE=0.0008;THETA=0.0013;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 143139991 . AT A 3212 PASS INDEL;BAVGPOST=0.892;BRSQ=0.524;LDAF=0.1651;AVGPOST=0.8712;RSQ=0.5606;ERATE=0.0346;THETA=0.0062;AC=233;AN=2184 GT:DS:GL:BD 0.10668498 0 1 143140207 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9330;ERATE=0.0004;THETA=0.0030;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 143140344 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0010;AVGPOST=0.9985;RSQ=0.3662;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143140990 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.759;LDAF=0.0049;AVGPOST=0.9981;RSQ=0.8433;ERATE=0.0004;THETA=0.0064;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 143141258 . TAAG T 513 PASS INDEL;BAVGPOST=0.997;BRSQ=0.685;LDAF=0.0057;AVGPOST=0.9950;RSQ=0.6404;ERATE=0.0016;THETA=0.0060;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 143141346 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.829;LDAF=0.0050;AVGPOST=0.9972;RSQ=0.7902;ERATE=0.0005;THETA=0.0050;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 143141372 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0004;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143141550 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.608;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5142;ERATE=0.0004;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143141562 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5441;ERATE=0.0004;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143142094 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.700;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.6861;ERATE=0.0008;THETA=0.0054;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143142336 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.761;LDAF=0.0034;AVGPOST=0.9979;RSQ=0.7544;ERATE=0.0004;THETA=0.0089;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143142554 rs111246166 AT A 85 PASS INDEL;BAVGPOST=0.979;BRSQ=0.503;LDAF=0.0217;AVGPOST=0.9771;RSQ=0.5652;ERATE=0.0062;THETA=0.0061;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 143142583 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.693;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5687;ERATE=0.0004;THETA=0.0068;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143142846 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.510;LDAF=0.0073;AVGPOST=0.9912;RSQ=0.4955;ERATE=0.0022;THETA=0.0049;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 143143247 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.844;LDAF=0.0042;AVGPOST=0.9979;RSQ=0.7834;ERATE=0.0006;THETA=0.0015;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 143143483 . TAG T 131 PASS INDEL;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7683;ERATE=0.0005;THETA=0.0115;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143143569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.881;LDAF=0.0103;AVGPOST=0.9932;RSQ=0.7501;ERATE=0.0006;THETA=0.0070;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 143144208 . TG T 139 PASS INDEL;BAVGPOST=0.992;BRSQ=0.503;LDAF=0.0133;AVGPOST=0.9818;RSQ=0.4114;ERATE=0.0026;THETA=0.0017;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 143144446 . C CT 2549 PASS INDEL;BAVGPOST=0.899;BRSQ=0.510;LDAF=0.1601;AVGPOST=0.8540;RSQ=0.5033;ERATE=0.0438;THETA=0.0123;AC=197;AN=2184 GT:DS:GL:BD 0.09020147 0 1 143144453 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.743;LDAF=0.0059;AVGPOST=0.9956;RSQ=0.6735;ERATE=0.0006;THETA=0.0035;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 143144808 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.550;LDAF=0.0024;AVGPOST=0.9969;RSQ=0.4780;ERATE=0.0009;THETA=0.0109;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143145584 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.515;LDAF=0.0406;AVGPOST=0.9701;RSQ=0.6965;ERATE=0.0005;THETA=0.0083;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 143145755 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.734;LDAF=0.0032;AVGPOST=0.9980;RSQ=0.7390;ERATE=0.0008;THETA=0.0063;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143145802 . T TTGTC 1589 PASS INDEL;BAVGPOST=0.988;BRSQ=0.807;LDAF=0.0309;AVGPOST=0.9876;RSQ=0.8144;ERATE=0.0004;THETA=0.0015;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 143145804 . G GTCTT 1423 PASS INDEL;BAVGPOST=0.988;BRSQ=0.813;LDAF=0.0334;AVGPOST=0.9855;RSQ=0.7993;ERATE=0.0010;THETA=0.0037;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 143145817 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.548;LDAF=0.0019;AVGPOST=0.9973;RSQ=0.4527;ERATE=0.0006;THETA=0.0063;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143145863 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.903;LDAF=0.0645;AVGPOST=0.9709;RSQ=0.8194;ERATE=0.0007;THETA=0.0023;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 143145939 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.739;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4432;ERATE=0.0005;THETA=0.0108;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143145947 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0013;AVGPOST=0.9981;RSQ=0.3207;ERATE=0.0006;THETA=0.0108;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143146003 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4967;ERATE=0.0005;THETA=0.0079;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143146106 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143146389 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.866;BRSQ=0.722;LDAF=0.2449;AVGPOST=0.8621;RSQ=0.7650;ERATE=0.0068;THETA=0.0085;AC=502;AN=2184 GT:DS:GL:BD 0.22985348 0 1 143146445 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.760;LDAF=0.0041;AVGPOST=0.9961;RSQ=0.6499;ERATE=0.0015;THETA=0.0060;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143147611 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6710;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143147891 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0079;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143148430 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0038;AVGPOST=0.9978;RSQ=0.7404;ERATE=0.0004;THETA=0.0020;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 143148486 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143148623 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.757;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4676;ERATE=0.0004;THETA=0.0063;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143148659 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.690;LDAF=0.9522;AVGPOST=0.9662;RSQ=0.7474;ERATE=0.0016;THETA=0.0096;AC=2096;AN=2184 GT:DS:GL:BD 0.95970696 1 1 143148764 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.804;LDAF=0.0051;AVGPOST=0.9971;RSQ=0.7519;ERATE=0.0012;THETA=0.0030;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 143148770 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9550;ERATE=0.0004;THETA=0.0046;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 143148790 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5670;ERATE=0.0004;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143148807 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143148846 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.782;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7605;ERATE=0.0005;THETA=0.0038;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143148847 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.762;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0004;THETA=0.0090;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143148979 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.704;LDAF=0.0168;AVGPOST=0.9865;RSQ=0.7177;ERATE=0.0011;THETA=0.0019;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 143149005 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0004;THETA=0.0046;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143149294 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.877;LDAF=0.0667;AVGPOST=0.9845;RSQ=0.8990;ERATE=0.0004;THETA=0.0051;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 143149349 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.711;LDAF=0.9730;AVGPOST=0.9812;RSQ=0.7246;ERATE=0.0006;THETA=0.0047;AC=2136;AN=2184 GT:DS:GL:BD 0.97802198 1 1 143150074 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.695;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5567;ERATE=0.0004;THETA=0.0156;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143151799 . TC T 107 PASS INDEL;BAVGPOST=0.995;BRSQ=0.690;LDAF=0.0089;AVGPOST=0.9917;RSQ=0.6081;ERATE=0.0023;THETA=0.0048;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 143152291 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0054;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143152624 . CTAG C 29 PASS INDEL;BAVGPOST=0.997;BRSQ=0.572;LDAF=0.0083;AVGPOST=0.9872;RSQ=0.3745;ERATE=0.0022;THETA=0.0084;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 143152663 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.866;BRSQ=0.762;LDAF=0.4592;AVGPOST=0.8662;RSQ=0.7882;ERATE=0.0244;THETA=0.0025;AC=990;AN=2184 GT:DS:GL:BD 0.45329669 0 1 143153803 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.733;LDAF=0.0040;AVGPOST=0.9973;RSQ=0.6884;ERATE=0.0009;THETA=0.0131;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 143153813 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.855;BRSQ=0.696;LDAF=0.2931;AVGPOST=0.8571;RSQ=0.7456;ERATE=0.0242;THETA=0.0055;AC=605;AN=2184 GT:DS:GL:BD 0.27701464 0 1 143154591 . GCTGA G 69 PASS INDEL;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6397;ERATE=0.0006;THETA=0.0048;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143154599 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.842;LDAF=0.0064;AVGPOST=0.9966;RSQ=0.7995;ERATE=0.0006;THETA=0.0058;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 143154666 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.643;LDAF=0.0041;AVGPOST=0.9951;RSQ=0.4686;ERATE=0.0008;THETA=0.0026;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143155858 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.910;BRSQ=0.422;LDAF=0.0964;AVGPOST=0.8929;RSQ=0.4825;ERATE=0.0208;THETA=0.0049;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 143156507 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0056;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143157192 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0004;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143157362 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7403;ERATE=0.0005;THETA=0.0025;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143157364 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.866;LDAF=0.0184;AVGPOST=0.9948;RSQ=0.8812;ERATE=0.0005;THETA=0.0096;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 143157368 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6094;ERATE=0.0006;THETA=0.0089;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143157645 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.949;BRSQ=0.874;LDAF=0.2509;AVGPOST=0.9537;RSQ=0.9034;ERATE=0.0013;THETA=0.0132;AC=548;AN=2184 GT:DS:GL:BD 0.25091577 0 1 143157725 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.937;BRSQ=0.696;LDAF=0.1344;AVGPOST=0.9257;RSQ=0.7232;ERATE=0.0287;THETA=0.0011;AC=251;AN=2184 GT:DS:GL:BD 0.11492674 0 1 143157973 . AG A 108 PASS INDEL;BAVGPOST=0.993;BRSQ=0.520;LDAF=0.0119;AVGPOST=0.9843;RSQ=0.3884;ERATE=0.0041;THETA=0.0067;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 143158220 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.661;LDAF=0.0096;AVGPOST=0.9937;RSQ=0.7271;ERATE=0.0005;THETA=0.0128;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 143158307 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.894;LDAF=0.0718;AVGPOST=0.9825;RSQ=0.8976;ERATE=0.0005;THETA=0.0078;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 143159358 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.950;BRSQ=0.884;LDAF=0.2690;AVGPOST=0.9479;RSQ=0.9017;ERATE=0.0020;THETA=0.0015;AC=588;AN=2184 GT:DS:GL:BD 0.26923078 0 1 143160180 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.949;BRSQ=0.679;LDAF=0.0901;AVGPOST=0.9416;RSQ=0.7065;ERATE=0.0177;THETA=0.0093;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 143160344 . GA G 249 PASS INDEL;BAVGPOST=0.998;BRSQ=0.734;LDAF=0.0055;AVGPOST=0.9986;RSQ=0.9000;ERATE=0.0005;THETA=0.0046;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 143160441 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0052;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143160569 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.759;LDAF=0.0043;AVGPOST=0.9964;RSQ=0.6678;ERATE=0.0004;THETA=0.0031;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 143160599 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.722;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4443;ERATE=0.0004;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143161141 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5797;ERATE=0.0005;THETA=0.0057;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143162852 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9398;ERATE=0.0003;THETA=0.0034;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 143164315 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0056;AVGPOST=0.9976;RSQ=0.8310;ERATE=0.0005;THETA=0.0015;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 143164325 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0028;AVGPOST=0.9985;RSQ=0.7502;ERATE=0.0007;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143166169 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4934;ERATE=0.0004;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143166870 . CAT C 237 PASS INDEL;BAVGPOST=0.988;BRSQ=0.714;LDAF=0.0255;AVGPOST=0.9851;RSQ=0.7837;ERATE=0.0005;THETA=0.0015;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 143168128 . CAT C 1082 PASS INDEL;BAVGPOST=0.996;BRSQ=0.898;LDAF=0.0122;AVGPOST=0.9965;RSQ=0.8908;ERATE=0.0005;THETA=0.0014;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 143170243 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.717;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5620;ERATE=0.0004;THETA=0.0038;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143170264 . AG A 88 PASS INDEL;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.3750;ERATE=0.0004;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143170620 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.655;LDAF=0.0345;AVGPOST=0.9790;RSQ=0.7656;ERATE=0.0007;THETA=0.0043;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 143170701 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.800;LDAF=0.0017;AVGPOST=0.9973;RSQ=0.3668;ERATE=0.0006;THETA=0.0033;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143170720 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.651;LDAF=0.0010;AVGPOST=0.9986;RSQ=0.4079;ERATE=0.0004;THETA=0.0069;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143170976 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.968;LDAF=0.2982;AVGPOST=0.9530;RSQ=0.9262;ERATE=0.0010;THETA=0.0019;AC=651;AN=2184 GT:DS:GL:BD 0.29807693 0 1 143170994 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.404;LDAF=0.0288;AVGPOST=0.9727;RSQ=0.6472;ERATE=0.0010;THETA=0.0046;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 143171094 . AGCT A 354 PASS INDEL;BAVGPOST=0.998;BRSQ=0.617;LDAF=0.0034;AVGPOST=0.9959;RSQ=0.4415;ERATE=0.0007;THETA=0.0056;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143171155 . CA C 895 PASS INDEL;BAVGPOST=0.995;BRSQ=0.672;LDAF=0.0069;AVGPOST=0.9967;RSQ=0.7790;ERATE=0.0005;THETA=0.0047;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 143171350 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5675;ERATE=0.0004;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143171378 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.527;LDAF=0.0263;AVGPOST=0.9753;RSQ=0.6459;ERATE=0.0007;THETA=0.0061;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 143172270 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.619;LDAF=0.0307;AVGPOST=0.9794;RSQ=0.7475;ERATE=0.0011;THETA=0.0082;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 143172846 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.675;LDAF=0.0047;AVGPOST=0.9979;RSQ=0.8313;ERATE=0.0005;THETA=0.0045;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 143172994 . CT C 112 PASS INDEL;BAVGPOST=0.991;BRSQ=0.666;LDAF=0.0159;AVGPOST=0.9871;RSQ=0.6505;ERATE=0.0041;THETA=0.0037;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 143173031 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7305;ERATE=0.0004;THETA=0.0043;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143173295 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.877;LDAF=0.0193;AVGPOST=0.9927;RSQ=0.8483;ERATE=0.0005;THETA=0.0152;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 143173379 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4468;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143173395 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.755;LDAF=0.0451;AVGPOST=0.9789;RSQ=0.8223;ERATE=0.0010;THETA=0.0042;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 143173457 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.6600;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143173675 . TC T 225 PASS INDEL;BAVGPOST=0.963;BRSQ=0.344;LDAF=0.0341;AVGPOST=0.9697;RSQ=0.6569;ERATE=0.0014;THETA=0.0072;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 143173821 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.276;LDAF=0.0452;AVGPOST=0.9325;RSQ=0.3807;ERATE=0.0037;THETA=0.0018;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 143173879 . C CA 1085 PASS INDEL;BAVGPOST=0.905;BRSQ=0.357;LDAF=0.1050;AVGPOST=0.8675;RSQ=0.4372;ERATE=0.0040;THETA=0.0011;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 143173880 . A AC 878 PASS INDEL;BAVGPOST=0.871;BRSQ=0.560;LDAF=0.1817;AVGPOST=0.8583;RSQ=0.6209;ERATE=0.0014;THETA=0.0008;AC=277;AN=2184 GT:DS:GL:BD 0.12683150 0 1 143173886 . C CT 6546 PASS INDEL;BAVGPOST=0.872;BRSQ=0.562;LDAF=0.1788;AVGPOST=0.8662;RSQ=0.6414;ERATE=0.0009;THETA=0.0027;AC=279;AN=2184 GT:DS:GL:BD 0.12774725 0 1 143173898 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.872;BRSQ=0.581;LDAF=0.2196;AVGPOST=0.8396;RSQ=0.5929;ERATE=0.0126;THETA=0.0043;AC=338;AN=2184 GT:DS:GL:BD 0.15476191 0 1 143173951 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.397;LDAF=0.0149;AVGPOST=0.9814;RSQ=0.4896;ERATE=0.0027;THETA=0.0102;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 143174330 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7217;ERATE=0.0004;THETA=0.0058;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143174385 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.525;LDAF=0.0061;AVGPOST=0.9938;RSQ=0.6012;ERATE=0.0005;THETA=0.0073;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 143174440 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5869;ERATE=0.0005;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143174450 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.933;LDAF=0.0876;AVGPOST=0.9762;RSQ=0.8921;ERATE=0.0004;THETA=0.0035;AC=176;AN=2184 GT:DS:GL:BD 0.08058608 0 1 143174576 . AC A 1410 PASS INDEL;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0140;AVGPOST=0.9962;RSQ=0.8830;ERATE=0.0007;THETA=0.0128;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 143174658 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0064;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143174862 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.681;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.5879;ERATE=0.0006;THETA=0.0088;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143175236 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.905;LDAF=0.0088;AVGPOST=0.9970;RSQ=0.8584;ERATE=0.0004;THETA=0.0011;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 143176174 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5044;ERATE=0.0004;THETA=0.0072;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143176330 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.839;BRSQ=0.244;LDAF=0.8955;AVGPOST=0.8787;RSQ=0.5074;ERATE=0.0040;THETA=0.0009;AC=2038;AN=2184 GT:DS:GL:BD 0.93315017 1 1 143176574 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143176816 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.757;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6540;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143177745 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7545;ERATE=0.0004;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143177790 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.694;LDAF=0.0035;AVGPOST=0.9959;RSQ=0.5035;ERATE=0.0009;THETA=0.0117;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143177897 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5552;ERATE=0.0003;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143177921 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.936;BRSQ=0.887;LDAF=0.3644;AVGPOST=0.9176;RSQ=0.8689;ERATE=0.0168;THETA=0.0035;AC=766;AN=2184 GT:DS:GL:BD 0.35073259 0 1 143178455 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4991;ERATE=0.0004;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143178481 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9691;ERATE=0.0003;THETA=0.0063;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 143179082 . G GGCTTCT 5482 PASS INDEL;BAVGPOST=0.967;BRSQ=0.661;LDAF=0.0665;AVGPOST=0.9433;RSQ=0.6080;ERATE=0.0184;THETA=0.0016;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 143179128 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.669;LDAF=0.0108;AVGPOST=0.9931;RSQ=0.7551;ERATE=0.0006;THETA=0.0102;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 143179185 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6505;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143179814 . G GA 2389 PASS INDEL;BAVGPOST=0.935;BRSQ=0.572;LDAF=0.1032;AVGPOST=0.9091;RSQ=0.5738;ERATE=0.0227;THETA=0.0021;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 143180094 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0066;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143180204 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.785;BRSQ=0.428;LDAF=0.3485;AVGPOST=0.8030;RSQ=0.5221;ERATE=0.0452;THETA=0.0134;AC=619;AN=2184 GT:DS:GL:BD 0.28342491 0 1 143180206 . AC A 307 PASS INDEL;BAVGPOST=0.962;BRSQ=0.490;LDAF=0.0393;AVGPOST=0.9593;RSQ=0.5484;ERATE=0.0022;THETA=0.0060;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 143180248 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.940;BRSQ=0.516;LDAF=0.0825;AVGPOST=0.9118;RSQ=0.5087;ERATE=0.0093;THETA=0.0113;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 143180256 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.677;BRSQ=0.358;LDAF=0.4034;AVGPOST=0.7539;RSQ=0.5018;ERATE=0.0084;THETA=0.0057;AC=768;AN=2184 GT:DS:GL:BD 0.35164836 0 1 143180263 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.364;LDAF=0.0547;AVGPOST=0.9155;RSQ=0.3023;ERATE=0.0083;THETA=0.0018;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 143180268 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.655;BRSQ=0.348;LDAF=0.4152;AVGPOST=0.7216;RSQ=0.4701;ERATE=0.0083;THETA=0.0051;AC=794;AN=2184 GT:DS:GL:BD 0.36355311 0 1 143182268 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.923;LDAF=0.1844;AVGPOST=0.9772;RSQ=0.9389;ERATE=0.0004;THETA=0.0059;AC=402;AN=2184 GT:DS:GL:BD 0.18406594 0 1 143182580 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.903;LDAF=0.0777;AVGPOST=0.9742;RSQ=0.8681;ERATE=0.0005;THETA=0.0030;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 143182651 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.0940;ERATE=0.0004;THETA=0.0026;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 143182690 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.766;LDAF=0.0015;AVGPOST=0.9991;RSQ=0.8136;ERATE=0.0003;THETA=0.0056;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143183320 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.952;LDAF=0.0650;AVGPOST=0.9925;RSQ=0.9485;ERATE=0.0004;THETA=0.0036;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 143183386 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0055;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143183439 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5799;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143183441 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.688;LDAF=0.0404;AVGPOST=0.9846;RSQ=0.8526;ERATE=0.0008;THETA=0.0016;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 143183499 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0004;THETA=0.0049;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143183671 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0004;THETA=0.0047;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143183826 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143183988 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.317;LDAF=0.9855;AVGPOST=0.9763;RSQ=0.3062;ERATE=0.0026;THETA=0.0029;AC=2178;AN=2184 GT:DS:GL:BD 0.99725276 1 1 143185370 . T TC 445 PASS INDEL;BAVGPOST=0.943;BRSQ=0.326;LDAF=0.0789;AVGPOST=0.8830;RSQ=0.3111;ERATE=0.0112;THETA=0.0015;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 143185849 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.952;BRSQ=0.876;LDAF=0.2010;AVGPOST=0.9626;RSQ=0.9271;ERATE=0.0019;THETA=0.0130;AC=438;AN=2184 GT:DS:GL:BD 0.20054945 0 1 143185912 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.905;BRSQ=0.818;LDAF=0.2638;AVGPOST=0.9165;RSQ=0.8723;ERATE=0.0033;THETA=0.0018;AC=580;AN=2184 GT:DS:GL:BD 0.26556778 0 1 143186134 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.637;LDAF=0.0137;AVGPOST=0.9864;RSQ=0.5775;ERATE=0.0008;THETA=0.0128;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 143186323 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143186356 . TA T 109 PASS INDEL;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0028;AVGPOST=0.9968;RSQ=0.5728;ERATE=0.0005;THETA=0.0020;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143186462 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.843;LDAF=0.0064;AVGPOST=0.9963;RSQ=0.7571;ERATE=0.0008;THETA=0.0077;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 143187175 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.819;LDAF=0.0209;AVGPOST=0.9915;RSQ=0.8402;ERATE=0.0004;THETA=0.0042;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 143187245 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.915;LDAF=0.0711;AVGPOST=0.9893;RSQ=0.9339;ERATE=0.0010;THETA=0.0023;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 143187379 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.563;LDAF=0.0024;AVGPOST=0.9961;RSQ=0.2961;ERATE=0.0005;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143187413 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.936;LDAF=0.0678;AVGPOST=0.9935;RSQ=0.9565;ERATE=0.0004;THETA=0.0080;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 143188631 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.899;BRSQ=0.815;LDAF=0.2854;AVGPOST=0.9099;RSQ=0.8644;ERATE=0.0119;THETA=0.0035;AC=613;AN=2184 GT:DS:GL:BD 0.28067765 0 1 143189340 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5758;ERATE=0.0004;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143189342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.736;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5491;ERATE=0.0004;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143189407 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.814;LDAF=0.0061;AVGPOST=0.9977;RSQ=0.8428;ERATE=0.0004;THETA=0.0024;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 143189418 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8085;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143189594 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.856;BRSQ=0.699;LDAF=0.2393;AVGPOST=0.8727;RSQ=0.7753;ERATE=0.0167;THETA=0.0022;AC=503;AN=2184 GT:DS:GL:BD 0.23031135 0 1 143189597 . GAA G 125 PASS INDEL;BAVGPOST=0.984;BRSQ=0.465;LDAF=0.0213;AVGPOST=0.9745;RSQ=0.5164;ERATE=0.0023;THETA=0.0051;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 143189629 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.590;LDAF=0.0096;AVGPOST=0.9920;RSQ=0.6674;ERATE=0.0007;THETA=0.0052;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 143189757 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0059;AVGPOST=0.9987;RSQ=0.9004;ERATE=0.0004;THETA=0.0068;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 143189767 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.834;LDAF=0.0057;AVGPOST=0.9977;RSQ=0.8297;ERATE=0.0006;THETA=0.0073;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 143189774 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.805;LDAF=0.0394;AVGPOST=0.9899;RSQ=0.9021;ERATE=0.0008;THETA=0.0091;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 143189827 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7335;ERATE=0.0004;THETA=0.0044;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143189853 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5898;ERATE=0.0005;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143189859 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.838;LDAF=0.0418;AVGPOST=0.9883;RSQ=0.8794;ERATE=0.0005;THETA=0.0088;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 143189862 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.947;LDAF=0.3043;AVGPOST=0.9688;RSQ=0.9508;ERATE=0.0031;THETA=0.0017;AC=668;AN=2184 GT:DS:GL:BD 0.30586082 0 1 143190193 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8316;ERATE=0.0003;THETA=0.0152;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143190696 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5252;ERATE=0.0004;THETA=0.0062;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143190945 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0004;THETA=0.0049;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143191286 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.771;BRSQ=0.354;LDAF=0.2987;AVGPOST=0.7698;RSQ=0.4578;ERATE=0.0440;THETA=0.0037;AC=467;AN=2184 GT:DS:GL:BD 0.21382783 0 1 143191398 . A AT 11 PASS INDEL;BAVGPOST=0.998;BRSQ=0.499;LDAF=0.0054;AVGPOST=0.9920;RSQ=0.3632;ERATE=0.0009;THETA=0.0068;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143191623 . TC T 164 PASS INDEL;BAVGPOST=0.964;BRSQ=0.141;LDAF=0.0984;AVGPOST=0.8309;RSQ=0.2293;ERATE=0.0046;THETA=0.0010;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 143192085 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6443;ERATE=0.0006;THETA=0.0030;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143192329 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5048;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143193604 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.861;BRSQ=0.436;LDAF=0.1120;AVGPOST=0.8819;RSQ=0.5506;ERATE=0.0118;THETA=0.0011;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 143194536 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5086;ERATE=0.0005;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143194591 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4322;ERATE=0.0006;THETA=0.0046;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143194651 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.915;BRSQ=0.838;LDAF=0.2764;AVGPOST=0.9356;RSQ=0.9072;ERATE=0.0014;THETA=0.0025;AC=611;AN=2184 GT:DS:GL:BD 0.27976191 0 1 143194823 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.577;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3774;ERATE=0.0006;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143194852 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6008;ERATE=0.0005;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143195203 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.697;LDAF=0.0052;AVGPOST=0.9977;RSQ=0.8153;ERATE=0.0004;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 143195484 . TGAGAG T 367 PASS INDEL;BAVGPOST=0.994;BRSQ=0.498;LDAF=0.0096;AVGPOST=0.9888;RSQ=0.4716;ERATE=0.0013;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 143195889 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.629;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7442;ERATE=0.0004;THETA=0.0138;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143195910 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.611;LDAF=0.0049;AVGPOST=0.9961;RSQ=0.6461;ERATE=0.0008;THETA=0.0030;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 143196347 . A AT 414 PASS INDEL;BAVGPOST=0.735;BRSQ=0.072;LDAF=0.1647;AVGPOST=0.7477;RSQ=0.2213;ERATE=0.0146;THETA=0.0049;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 143196401 . C CTA 212 PASS INDEL;BAVGPOST=0.362;BRSQ=0.012;LDAF=0.2197;AVGPOST=0.6695;RSQ=0.1822;ERATE=0.0162;THETA=0.0010;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 143196437 . AT A 180 PASS INDEL;BAVGPOST=0.912;BRSQ=0.109;LDAF=0.0850;AVGPOST=0.8635;RSQ=0.2625;ERATE=0.0066;THETA=0.0007;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 143196449 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.610;BRSQ=0.171;LDAF=0.6829;AVGPOST=0.6613;RSQ=0.3190;ERATE=0.0304;THETA=0.0050;AC=1686;AN=2184 GT:DS:GL:BD 0.77197802 1 1 143196868 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5377;ERATE=0.0004;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143197075 . TG T 950 PASS INDEL;BAVGPOST=0.941;BRSQ=0.361;LDAF=0.0533;AVGPOST=0.9421;RSQ=0.5753;ERATE=0.0010;THETA=0.0066;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 143198151 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.520;LDAF=0.0025;AVGPOST=0.9959;RSQ=0.2933;ERATE=0.0007;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143198171 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.595;LDAF=0.0026;AVGPOST=0.9969;RSQ=0.5328;ERATE=0.0008;THETA=0.0064;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143198212 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.581;LDAF=0.0189;AVGPOST=0.9793;RSQ=0.5498;ERATE=0.0047;THETA=0.0030;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 143198863 . CA C 1929 PASS INDEL;BAVGPOST=0.902;BRSQ=0.481;LDAF=0.1464;AVGPOST=0.8586;RSQ=0.4910;ERATE=0.0355;THETA=0.0019;AC=176;AN=2184 GT:DS:GL:BD 0.08058608 0 1 143199489 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.674;LDAF=0.0066;AVGPOST=0.9996;RSQ=0.9706;ERATE=0.0004;THETA=0.0016;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 143199698 . GA G 395 PASS INDEL;BAVGPOST=0.964;BRSQ=0.529;LDAF=0.0284;AVGPOST=0.9766;RSQ=0.7055;ERATE=0.0005;THETA=0.0063;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 143199744 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.740;LDAF=0.0305;AVGPOST=0.9849;RSQ=0.8057;ERATE=0.0004;THETA=0.0021;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 143199864 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.831;LDAF=0.0306;AVGPOST=0.9875;RSQ=0.8314;ERATE=0.0007;THETA=0.0184;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 143199896 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.787;LDAF=0.0145;AVGPOST=0.9917;RSQ=0.7719;ERATE=0.0005;THETA=0.0043;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 143199903 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.949;LDAF=0.1168;AVGPOST=0.9786;RSQ=0.9237;ERATE=0.0006;THETA=0.0034;AC=250;AN=2184 GT:DS:GL:BD 0.11446887 0 1 143199926 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4979;ERATE=0.0005;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143200050 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.724;LDAF=0.0010;AVGPOST=0.9987;RSQ=0.4396;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143201201 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.765;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.6074;ERATE=0.0004;THETA=0.0084;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143201304 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.771;LDAF=0.0043;AVGPOST=0.9973;RSQ=0.7500;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 143202242 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.711;LDAF=0.0240;AVGPOST=0.9844;RSQ=0.7597;ERATE=0.0008;THETA=0.0022;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 143202771 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8344;ERATE=0.0004;THETA=0.0034;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143202850 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.6872;ERATE=0.0006;THETA=0.0022;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143202993 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.761;LDAF=0.0245;AVGPOST=0.9904;RSQ=0.8414;ERATE=0.0007;THETA=0.0032;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 143203057 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.694;LDAF=0.0128;AVGPOST=0.9924;RSQ=0.7568;ERATE=0.0008;THETA=0.0019;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 143203296 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.494;LDAF=0.0025;AVGPOST=0.9977;RSQ=0.5903;ERATE=0.0008;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143203297 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4088;ERATE=0.0006;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143203340 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.637;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6247;ERATE=0.0004;THETA=0.0032;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143203460 . TA T 1460 PASS INDEL;BAVGPOST=0.863;BRSQ=0.402;LDAF=0.1599;AVGPOST=0.8274;RSQ=0.4550;ERATE=0.0267;THETA=0.0064;AC=179;AN=2184 GT:DS:GL:BD 0.08195971 0 1 143203782 . GA G 90 PASS INDEL;BAVGPOST=0.987;BRSQ=0.589;LDAF=0.0163;AVGPOST=0.9861;RSQ=0.6733;ERATE=0.0007;THETA=0.0081;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 143203798 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0004;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143204173 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.880;BRSQ=0.710;LDAF=0.2018;AVGPOST=0.8948;RSQ=0.8035;ERATE=0.0051;THETA=0.0061;AC=426;AN=2184 GT:DS:GL:BD 0.19505495 0 1 143204409 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.699;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6299;ERATE=0.0004;THETA=0.0090;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143204459 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.673;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5871;ERATE=0.0004;THETA=0.0046;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143204468 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.716;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5090;ERATE=0.0004;THETA=0.0056;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143204504 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.957;BRSQ=0.914;LDAF=0.2944;AVGPOST=0.9408;RSQ=0.9017;ERATE=0.0013;THETA=0.0020;AC=647;AN=2184 GT:DS:GL:BD 0.29624543 0 1 143204695 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.783;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.5826;ERATE=0.0005;THETA=0.0033;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143204749 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0045;AVGPOST=0.9961;RSQ=0.6240;ERATE=0.0013;THETA=0.0036;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 143204781 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0028;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143204794 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6796;ERATE=0.0004;THETA=0.0072;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143204906 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6141;ERATE=0.0005;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143204911 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.726;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.6381;ERATE=0.0005;THETA=0.0096;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143204914 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.944;LDAF=0.2902;AVGPOST=0.9698;RSQ=0.9491;ERATE=0.0006;THETA=0.0032;AC=639;AN=2184 GT:DS:GL:BD 0.29258242 0 1 143204931 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.934;BRSQ=0.661;LDAF=0.1147;AVGPOST=0.9220;RSQ=0.6685;ERATE=0.0341;THETA=0.0020;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 143204938 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4645;ERATE=0.0005;THETA=0.0054;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143205080 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.656;LDAF=0.0031;AVGPOST=0.9974;RSQ=0.6305;ERATE=0.0005;THETA=0.0059;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143205085 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.974;LDAF=0.0614;AVGPOST=0.9898;RSQ=0.9289;ERATE=0.0004;THETA=0.0006;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 143205409 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.869;BRSQ=0.565;LDAF=0.3016;AVGPOST=0.8548;RSQ=0.5956;ERATE=0.0657;THETA=0.0010;AC=555;AN=2184 GT:DS:GL:BD 0.25412089 0 1 143205857 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.866;BRSQ=0.696;LDAF=0.2290;AVGPOST=0.8798;RSQ=0.7952;ERATE=0.0141;THETA=0.0008;AC=474;AN=2184 GT:DS:GL:BD 0.21703297 0 1 143205948 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.740;LDAF=0.0053;AVGPOST=0.9963;RSQ=0.7495;ERATE=0.0005;THETA=0.0054;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 143206212 . TA T 36 PASS INDEL;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5235;ERATE=0.0004;THETA=0.0047;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143206506 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.175;LDAF=0.9907;AVGPOST=0.9873;RSQ=0.4063;ERATE=0.0011;THETA=0.0006;AC=2176;AN=2184 GT:DS:GL:BD 0.99633700 1 1 143206711 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0652;AVGPOST=0.9913;RSQ=0.9397;ERATE=0.0007;THETA=0.0011;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 143207263 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0004;THETA=0.0043;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143207286 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.966;LDAF=0.3055;AVGPOST=0.9772;RSQ=0.9631;ERATE=0.0006;THETA=0.0044;AC=672;AN=2184 GT:DS:GL:BD 0.30769232 0 1 143207799 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.882;BRSQ=0.504;LDAF=0.1633;AVGPOST=0.8587;RSQ=0.5314;ERATE=0.0220;THETA=0.0056;AC=250;AN=2184 GT:DS:GL:BD 0.11446887 0 1 143207881 . GA G 37 PASS INDEL;BAVGPOST=0.982;BRSQ=0.308;LDAF=0.0157;AVGPOST=0.9802;RSQ=0.5277;ERATE=0.0023;THETA=0.0041;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 143208009 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.959;LDAF=0.1217;AVGPOST=0.9776;RSQ=0.9202;ERATE=0.0013;THETA=0.0020;AC=260;AN=2184 GT:DS:GL:BD 0.11904762 0 1 143208267 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4723;ERATE=0.0004;THETA=0.0063;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143208283 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4902;ERATE=0.0005;THETA=0.0053;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143208605 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.685;LDAF=0.0025;AVGPOST=0.9974;RSQ=0.5690;ERATE=0.0006;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143208676 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.930;BRSQ=0.829;LDAF=0.2233;AVGPOST=0.9598;RSQ=0.9238;ERATE=0.0010;THETA=0.0022;AC=484;AN=2184 GT:DS:GL:BD 0.22161172 0 1 143208754 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.426;LDAF=0.0029;AVGPOST=0.9962;RSQ=0.4881;ERATE=0.0011;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143208975 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.692;LDAF=0.0019;AVGPOST=0.9968;RSQ=0.2494;ERATE=0.0007;THETA=0.0055;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 143209032 . C CT 313 PASS INDEL;BAVGPOST=0.977;BRSQ=0.449;LDAF=0.0295;AVGPOST=0.9616;RSQ=0.4643;ERATE=0.0069;THETA=0.0045;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 143209072 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.700;LDAF=0.0023;AVGPOST=0.9979;RSQ=0.6082;ERATE=0.0006;THETA=0.0030;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143209251 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6091;ERATE=0.0004;THETA=0.0065;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143209277 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.921;LDAF=0.0245;AVGPOST=0.9945;RSQ=0.9052;ERATE=0.0007;THETA=0.0025;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 143209361 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.743;LDAF=0.0027;AVGPOST=0.9975;RSQ=0.5725;ERATE=0.0007;THETA=0.0046;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143209415 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.880;LDAF=0.1056;AVGPOST=0.9624;RSQ=0.8510;ERATE=0.0011;THETA=0.0016;AC=206;AN=2184 GT:DS:GL:BD 0.09432235 0 1 143209585 . CCT C 40 PASS INDEL;BAVGPOST=0.992;BRSQ=0.244;LDAF=0.0156;AVGPOST=0.9726;RSQ=0.2649;ERATE=0.0024;THETA=0.0017;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 143209856 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5489;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143209927 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.838;LDAF=0.0045;AVGPOST=0.9981;RSQ=0.8260;ERATE=0.0006;THETA=0.0034;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 143210107 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.748;LDAF=0.0040;AVGPOST=0.9989;RSQ=0.8948;ERATE=0.0003;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 143210222 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.919;LDAF=0.1092;AVGPOST=0.9819;RSQ=0.9268;ERATE=0.0008;THETA=0.0006;AC=238;AN=2184 GT:DS:GL:BD 0.10897436 0 1 143210256 . AT A 148 PASS INDEL;BAVGPOST=0.987;BRSQ=0.467;LDAF=0.0161;AVGPOST=0.9837;RSQ=0.6245;ERATE=0.0005;THETA=0.0094;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 143210319 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.807;LDAF=0.0153;AVGPOST=0.9943;RSQ=0.8326;ERATE=0.0008;THETA=0.0009;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 143210361 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.748;LDAF=0.0027;AVGPOST=0.9982;RSQ=0.7078;ERATE=0.0007;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143210391 . AATAAC A 218 PASS INDEL;BAVGPOST=0.947;BRSQ=0.527;LDAF=0.0546;AVGPOST=0.9752;RSQ=0.8210;ERATE=0.0009;THETA=0.0013;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 143210398 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6874;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143210438 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4628;ERATE=0.0004;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143210539 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.944;BRSQ=0.872;LDAF=0.2724;AVGPOST=0.9486;RSQ=0.9022;ERATE=0.0006;THETA=0.0013;AC=611;AN=2184 GT:DS:GL:BD 0.27976191 0 1 143210568 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4800;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143210581 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.710;LDAF=0.0018;AVGPOST=0.9987;RSQ=0.6776;ERATE=0.0006;THETA=0.0023;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143210582 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7118;ERATE=0.0004;THETA=0.0026;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143210902 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.766;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.5651;ERATE=0.0007;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143210959 . GA G 201 PASS INDEL;BAVGPOST=0.969;BRSQ=0.404;LDAF=0.0423;AVGPOST=0.9458;RSQ=0.4445;ERATE=0.0101;THETA=0.0023;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 143211035 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.709;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4534;ERATE=0.0006;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143211194 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.725;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.3763;ERATE=0.0006;THETA=0.0053;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143211703 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.947;BRSQ=0.608;LDAF=0.0535;AVGPOST=0.9718;RSQ=0.7994;ERATE=0.0007;THETA=0.0033;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 143211739 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.663;LDAF=0.0035;AVGPOST=0.9965;RSQ=0.5423;ERATE=0.0006;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143211780 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.662;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4282;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143212073 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6678;ERATE=0.0004;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143212285 . CCTT C 16 PASS INDEL;BAVGPOST=0.980;BRSQ=0.116;LDAF=0.0275;AVGPOST=0.9546;RSQ=0.2813;ERATE=0.0036;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 143212680 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.657;LDAF=0.0326;AVGPOST=0.9776;RSQ=0.7416;ERATE=0.0010;THETA=0.0030;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 143212728 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0005;AVGPOST=0.9993;RSQ=0.4312;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143212878 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143212886 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7520;ERATE=0.0004;THETA=0.0091;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143212915 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.843;LDAF=0.0242;AVGPOST=0.9916;RSQ=0.8646;ERATE=0.0005;THETA=0.0008;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 143213053 . CA C 133 PASS INDEL;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0021;AVGPOST=0.9977;RSQ=0.5193;ERATE=0.0005;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143213063 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.5330;ERATE=0.0004;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143213092 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.765;LDAF=0.0123;AVGPOST=0.9920;RSQ=0.7952;ERATE=0.0021;THETA=0.0024;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 143213100 . GCT G 8341 PASS INDEL;BAVGPOST=0.971;BRSQ=0.800;LDAF=0.0693;AVGPOST=0.9710;RSQ=0.8496;ERATE=0.0006;THETA=0.0039;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 143213156 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.850;LDAF=0.0350;AVGPOST=0.9829;RSQ=0.8101;ERATE=0.0006;THETA=0.0097;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 143213752 . CTCT C 4465 PASS INDEL;BAVGPOST=0.901;BRSQ=0.755;LDAF=0.2122;AVGPOST=0.8989;RSQ=0.8109;ERATE=0.0005;THETA=0.0023;AC=466;AN=2184 GT:DS:GL:BD 0.21336997 0 1 143213753 . TC T 10893 PASS INDEL;BAVGPOST=0.918;BRSQ=0.819;LDAF=0.2543;AVGPOST=0.9239;RSQ=0.8756;ERATE=0.0005;THETA=0.0021;AC=569;AN=2184 GT:DS:GL:BD 0.26053113 0 1 143213754 . CT C 219 PASS INDEL;BAVGPOST=0.860;BRSQ=0.227;LDAF=0.1481;AVGPOST=0.7934;RSQ=0.3361;ERATE=0.0233;THETA=0.0033;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 143213755 . T TC 240 PASS INDEL;BAVGPOST=0.961;BRSQ=0.434;LDAF=0.0468;AVGPOST=0.9425;RSQ=0.4783;ERATE=0.0080;THETA=0.0020;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 143213798 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.650;LDAF=0.0037;AVGPOST=0.9954;RSQ=0.4534;ERATE=0.0009;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143213810 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4227;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143213819 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0026;AVGPOST=0.9980;RSQ=0.6775;ERATE=0.0006;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143213900 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.638;LDAF=0.0063;AVGPOST=0.9949;RSQ=0.6792;ERATE=0.0006;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 143213952 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.723;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8276;ERATE=0.0004;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143214001 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.505;LDAF=0.0022;AVGPOST=0.9972;RSQ=0.5128;ERATE=0.0006;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143214004 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.672;LDAF=0.0028;AVGPOST=0.9970;RSQ=0.5142;ERATE=0.0007;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143214083 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.720;LDAF=0.0024;AVGPOST=0.9978;RSQ=0.5842;ERATE=0.0004;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143214151 . CCT C 610 PASS INDEL;BAVGPOST=0.974;BRSQ=0.530;LDAF=0.0302;AVGPOST=0.9788;RSQ=0.7419;ERATE=0.0009;THETA=0.0026;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 143214179 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.828;LDAF=0.0064;AVGPOST=0.9988;RSQ=0.9214;ERATE=0.0004;THETA=0.0061;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 143214192 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.798;LDAF=0.0063;AVGPOST=0.9962;RSQ=0.7614;ERATE=0.0005;THETA=0.0010;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 143214281 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.616;LDAF=0.0079;AVGPOST=0.9924;RSQ=0.5966;ERATE=0.0012;THETA=0.0011;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 143214291 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.941;LDAF=0.0638;AVGPOST=0.9909;RSQ=0.9315;ERATE=0.0006;THETA=0.0036;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 143214358 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4110;ERATE=0.0007;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143214385 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.557;LDAF=0.0029;AVGPOST=0.9952;RSQ=0.2720;ERATE=0.0007;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143214778 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4330;ERATE=0.0006;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143216518 . TAAGA T 48 PASS INDEL;BAVGPOST=0.998;BRSQ=0.354;LDAF=0.0172;AVGPOST=0.9687;RSQ=0.3040;ERATE=0.0014;THETA=0.0017;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 143217275 . A AC 140 PASS INDEL;BAVGPOST=0.952;BRSQ=0.261;LDAF=0.0454;AVGPOST=0.9376;RSQ=0.4708;ERATE=0.0038;THETA=0.0009;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 143218882 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.914;LDAF=0.0271;AVGPOST=0.9879;RSQ=0.8363;ERATE=0.0007;THETA=0.0026;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 143218998 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5999;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143219429 . TG T 1338 PASS INDEL;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0648;AVGPOST=0.9893;RSQ=0.9216;ERATE=0.0010;THETA=0.0014;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 143219436 . GT G 16876 PASS INDEL;BAVGPOST=0.871;BRSQ=0.765;LDAF=0.4129;AVGPOST=0.8304;RSQ=0.7260;ERATE=0.0207;THETA=0.0043;AC=902;AN=2184 GT:DS:GL:BD 0.41300365 0 1 143219478 . TGTTGTG T 495 PASS INDEL;BAVGPOST=0.974;BRSQ=0.372;LDAF=0.0542;AVGPOST=0.9171;RSQ=0.3045;ERATE=0.0082;THETA=0.0006;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 143219494 . GTTT G 279 PASS INDEL;BAVGPOST=0.979;BRSQ=0.354;LDAF=0.0337;AVGPOST=0.9484;RSQ=0.3072;ERATE=0.0051;THETA=0.0040;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 143220644 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.885;BRSQ=0.647;LDAF=0.1795;AVGPOST=0.8871;RSQ=0.7397;ERATE=0.0098;THETA=0.0009;AC=369;AN=2184 GT:DS:GL:BD 0.16895604 0 1 143220700 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.951;LDAF=0.0654;AVGPOST=0.9887;RSQ=0.9222;ERATE=0.0009;THETA=0.0012;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 143220769 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.669;LDAF=0.0026;AVGPOST=0.9968;RSQ=0.5014;ERATE=0.0005;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143220770 . TG T 16 PASS INDEL;BAVGPOST=0.995;BRSQ=0.509;LDAF=0.0028;AVGPOST=0.9961;RSQ=0.5230;ERATE=0.0005;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143220775 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.739;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6432;ERATE=0.0006;THETA=0.0019;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143220787 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.679;LDAF=0.0063;AVGPOST=0.9943;RSQ=0.6460;ERATE=0.0008;THETA=0.0048;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 143220917 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.878;BRSQ=0.693;LDAF=0.2194;AVGPOST=0.8814;RSQ=0.7668;ERATE=0.0082;THETA=0.0046;AC=456;AN=2184 GT:DS:GL:BD 0.20879121 0 1 143221095 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.4825;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143221358 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.719;LDAF=0.0195;AVGPOST=0.9891;RSQ=0.7645;ERATE=0.0008;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 143221411 rs71248081 C CA 7782 PASS INDEL;BAVGPOST=0.969;BRSQ=0.837;LDAF=0.1056;AVGPOST=0.9744;RSQ=0.8966;ERATE=0.0006;THETA=0.0017;AC=228;AN=2184 GT:DS:GL:BD 0.10439561 0 1 143221823 . C CAG 44 PASS INDEL;BAVGPOST=0.998;BRSQ=0.346;LDAF=0.0077;AVGPOST=0.9859;RSQ=0.2095;ERATE=0.0015;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143222300 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0015;AVGPOST=0.9978;RSQ=0.3779;ERATE=0.0004;THETA=0.0064;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143222531 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.891;BRSQ=0.681;LDAF=0.1862;AVGPOST=0.8999;RSQ=0.7657;ERATE=0.0054;THETA=0.0021;AC=383;AN=2184 GT:DS:GL:BD 0.17536630 0 1 143223731 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6400;ERATE=0.0006;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143224312 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.714;LDAF=0.0072;AVGPOST=0.9930;RSQ=0.6005;ERATE=0.0008;THETA=0.0021;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 143224337 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.766;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.6548;ERATE=0.0004;THETA=0.0030;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143226193 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5882;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143226219 . GC G 55 PASS INDEL;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4989;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143227012 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.616;LDAF=0.0093;AVGPOST=0.9920;RSQ=0.6551;ERATE=0.0005;THETA=0.0034;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 143227079 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.774;LDAF=0.0017;AVGPOST=0.9986;RSQ=0.6542;ERATE=0.0006;THETA=0.0031;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143228020 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.767;LDAF=0.0010;AVGPOST=0.9986;RSQ=0.4600;ERATE=0.0004;THETA=0.0117;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143228068 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.522;LDAF=0.0054;AVGPOST=0.9967;RSQ=0.7375;ERATE=0.0006;THETA=0.0074;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 143228404 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.684;LDAF=0.0026;AVGPOST=0.9975;RSQ=0.6015;ERATE=0.0005;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143229176 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.957;LDAF=0.3032;AVGPOST=0.9757;RSQ=0.9607;ERATE=0.0015;THETA=0.0018;AC=672;AN=2184 GT:DS:GL:BD 0.30769232 0 1 143229337 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.945;BRSQ=0.690;LDAF=0.1086;AVGPOST=0.9305;RSQ=0.6846;ERATE=0.0175;THETA=0.0014;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 143229768 . T TG 25 PASS INDEL;BAVGPOST=0.975;BRSQ=0.139;LDAF=0.0625;AVGPOST=0.8959;RSQ=0.2534;ERATE=0.0072;THETA=0.0092;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 143230134 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.741;LDAF=0.0251;AVGPOST=0.9910;RSQ=0.8485;ERATE=0.0008;THETA=0.0013;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 143230480 . TATA T 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5736;ERATE=0.0004;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143230854 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5270;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143230925 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4468;ERATE=0.0005;THETA=0.0042;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143230944 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.992;LDAF=0.3112;AVGPOST=0.9899;RSQ=0.9840;ERATE=0.0004;THETA=0.0005;AC=683;AN=2184 GT:DS:GL:BD 0.31272894 0 1 143232342 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0025;AVGPOST=0.9977;RSQ=0.6428;ERATE=0.0007;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143234310 . GC G 37 PASS INDEL;BAVGPOST=0.973;BRSQ=0.244;LDAF=0.0442;AVGPOST=0.9312;RSQ=0.3373;ERATE=0.0060;THETA=0.0026;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 143234734 . A AGG 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5655;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143235316 . AC A 21 PASS INDEL;BAVGPOST=0.999;BRSQ=0.723;LDAF=0.0038;AVGPOST=0.9950;RSQ=0.4727;ERATE=0.0008;THETA=0.0069;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143235508 . T TA 772 PASS INDEL;BAVGPOST=0.903;BRSQ=0.365;LDAF=0.0998;AVGPOST=0.9019;RSQ=0.6057;ERATE=0.0083;THETA=0.0027;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 143235533 . TG T 773 PASS INDEL;BAVGPOST=0.996;BRSQ=0.794;LDAF=0.0090;AVGPOST=0.9902;RSQ=0.6003;ERATE=0.0010;THETA=0.0057;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 143235535 . GC G 93 PASS INDEL;BAVGPOST=0.965;BRSQ=0.270;LDAF=0.0701;AVGPOST=0.8852;RSQ=0.2821;ERATE=0.0038;THETA=0.0010;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 143235571 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.838;LDAF=0.0848;AVGPOST=0.9644;RSQ=0.8091;ERATE=0.0055;THETA=0.0037;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 143236488 . CAG C 364 PASS INDEL;BAVGPOST=0.921;BRSQ=0.199;LDAF=0.1032;AVGPOST=0.8383;RSQ=0.2707;ERATE=0.0109;THETA=0.0009;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 143236682 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.708;LDAF=0.0090;AVGPOST=0.9957;RSQ=0.7840;ERATE=0.0004;THETA=0.0013;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 143236684 . A ATAT 1606 PASS INDEL;BAVGPOST=0.955;BRSQ=0.536;LDAF=0.0584;AVGPOST=0.9520;RSQ=0.6526;ERATE=0.0109;THETA=0.0035;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 143236922 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.859;BRSQ=0.708;LDAF=0.2410;AVGPOST=0.8681;RSQ=0.7614;ERATE=0.0231;THETA=0.0005;AC=482;AN=2184 GT:DS:GL:BD 0.22069597 0 1 143237366 . A AG 1317 PASS INDEL;BAVGPOST=0.987;BRSQ=0.865;LDAF=0.0586;AVGPOST=0.9892;RSQ=0.9206;ERATE=0.0008;THETA=0.0014;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 143237674 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5545;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143238088 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.346;LDAF=0.9851;AVGPOST=0.9814;RSQ=0.5547;ERATE=0.0006;THETA=0.0020;AC=2164;AN=2184 GT:DS:GL:BD 0.99084246 1 1 143238413 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0023;AVGPOST=0.9976;RSQ=0.5587;ERATE=0.0006;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143238640 . GA G 853 PASS INDEL;BAVGPOST=0.866;BRSQ=0.648;LDAF=0.1758;AVGPOST=0.8498;RSQ=0.6837;ERATE=0.0089;THETA=0.0010;AC=319;AN=2184 GT:DS:GL:BD 0.14606227 0 1 143238642 rs71582742 AG A 25501 PASS INDEL;BAVGPOST=0.963;BRSQ=0.937;LDAF=0.3044;AVGPOST=0.9822;RSQ=0.9722;ERATE=0.0008;THETA=0.0032;AC=670;AN=2184 GT:DS:GL:BD 0.30677655 0 1 143238754 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.863;BRSQ=0.693;LDAF=0.3263;AVGPOST=0.8663;RSQ=0.7487;ERATE=0.0125;THETA=0.0016;AC=684;AN=2184 GT:DS:GL:BD 0.31318682 0 1 143238844 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.651;LDAF=0.0053;AVGPOST=0.9948;RSQ=0.6193;ERATE=0.0020;THETA=0.0048;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 143238980 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5709;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143239359 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0021;AVGPOST=0.9990;RSQ=0.7866;ERATE=0.0005;THETA=0.0020;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143239372 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5136;ERATE=0.0006;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143239419 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0045;AVGPOST=0.9982;RSQ=0.8257;ERATE=0.0004;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 143239481 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.932;BRSQ=0.872;LDAF=0.3862;AVGPOST=0.9105;RSQ=0.8586;ERATE=0.0142;THETA=0.0011;AC=852;AN=2184 GT:DS:GL:BD 0.39010990 0 1 143239517 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.921;BRSQ=0.712;LDAF=0.1861;AVGPOST=0.8941;RSQ=0.7054;ERATE=0.0292;THETA=0.0023;AC=339;AN=2184 GT:DS:GL:BD 0.15521978 0 1 143239520 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0030;AVGPOST=0.9992;RSQ=0.8778;ERATE=0.0004;THETA=0.0049;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 143239526 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.471;LDAF=0.0022;AVGPOST=0.9976;RSQ=0.5565;ERATE=0.0005;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143239547 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.597;LDAF=0.0038;AVGPOST=0.9945;RSQ=0.3649;ERATE=0.0014;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143239572 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.585;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4684;ERATE=0.0005;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143239705 . CT C 373 PASS INDEL;BAVGPOST=0.995;BRSQ=0.607;LDAF=0.0107;AVGPOST=0.9869;RSQ=0.4745;ERATE=0.0038;THETA=0.0013;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 143239768 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.688;LDAF=0.0042;AVGPOST=0.9970;RSQ=0.6851;ERATE=0.0007;THETA=0.0017;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 143240436 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.785;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7914;ERATE=0.0005;THETA=0.0045;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143240464 . CG C 34 PASS INDEL;BAVGPOST=0.999;BRSQ=0.790;LDAF=0.0027;AVGPOST=0.9982;RSQ=0.6971;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143240695 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143240722 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.852;LDAF=0.0090;AVGPOST=0.9979;RSQ=0.9049;ERATE=0.0004;THETA=0.0043;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 143241015 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.930;LDAF=0.1020;AVGPOST=0.9849;RSQ=0.9393;ERATE=0.0005;THETA=0.0008;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 143241090 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143241474 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.635;LDAF=0.0658;AVGPOST=0.9583;RSQ=0.7326;ERATE=0.0050;THETA=0.0012;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 143241515 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.684;LDAF=0.0124;AVGPOST=0.9898;RSQ=0.6688;ERATE=0.0006;THETA=0.0029;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 143241710 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.798;LDAF=0.0053;AVGPOST=0.9932;RSQ=0.4905;ERATE=0.0007;THETA=0.0020;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143241715 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7258;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143241759 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.953;BRSQ=0.898;LDAF=0.2846;AVGPOST=0.9629;RSQ=0.9332;ERATE=0.0008;THETA=0.0059;AC=634;AN=2184 GT:DS:GL:BD 0.29029304 0 1 143241835 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.973;LDAF=0.3277;AVGPOST=0.9589;RSQ=0.9370;ERATE=0.0083;THETA=0.0043;AC=710;AN=2184 GT:DS:GL:BD 0.32509157 0 1 143241892 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.822;LDAF=0.0575;AVGPOST=0.9858;RSQ=0.8983;ERATE=0.0010;THETA=0.0045;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 143241952 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.895;LDAF=0.0569;AVGPOST=0.9824;RSQ=0.8708;ERATE=0.0008;THETA=0.0056;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 143242243 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5470;ERATE=0.0005;THETA=0.0061;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143242600 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.886;LDAF=0.0080;AVGPOST=0.9964;RSQ=0.8186;ERATE=0.0007;THETA=0.0012;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 143242613 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.881;LDAF=0.0102;AVGPOST=0.9942;RSQ=0.7773;ERATE=0.0013;THETA=0.0034;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 143242638 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.848;LDAF=0.0553;AVGPOST=0.9805;RSQ=0.8561;ERATE=0.0009;THETA=0.0010;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 143242746 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7543;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143242839 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.783;LDAF=0.0403;AVGPOST=0.9792;RSQ=0.7880;ERATE=0.0007;THETA=0.0040;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 143242950 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.396;LDAF=0.0040;AVGPOST=0.9952;RSQ=0.4670;ERATE=0.0009;THETA=0.0023;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143243387 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0004;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143243405 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6384;ERATE=0.0004;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143243998 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.738;LDAF=0.0054;AVGPOST=0.9957;RSQ=0.7002;ERATE=0.0006;THETA=0.0013;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 143244016 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.709;LDAF=0.0044;AVGPOST=0.9959;RSQ=0.6464;ERATE=0.0006;THETA=0.0025;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 143244030 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.883;LDAF=0.0060;AVGPOST=0.9967;RSQ=0.7895;ERATE=0.0004;THETA=0.0020;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 143244072 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143244213 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0027;AVGPOST=0.9995;RSQ=0.9288;ERATE=0.0003;THETA=0.0023;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 143244461 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.812;LDAF=0.0023;AVGPOST=0.9988;RSQ=0.7599;ERATE=0.0005;THETA=0.0116;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143244467 . GGC G 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.6079;ERATE=0.0004;THETA=0.0033;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143244635 . C CA 600 PASS INDEL;BAVGPOST=0.981;BRSQ=0.675;LDAF=0.0591;AVGPOST=0.9257;RSQ=0.4242;ERATE=0.0142;THETA=0.0016;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 143245417 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.786;LDAF=0.0152;AVGPOST=0.9922;RSQ=0.7933;ERATE=0.0006;THETA=0.0023;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 143245437 . CG C 121 PASS INDEL;BAVGPOST=0.972;BRSQ=0.532;LDAF=0.0291;AVGPOST=0.9772;RSQ=0.7167;ERATE=0.0007;THETA=0.0011;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 143245442 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5441;ERATE=0.0004;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143245656 rs4061273 CACT C 1321 PASS INDEL;BAVGPOST=0.991;BRSQ=0.855;LDAF=0.0365;AVGPOST=0.9872;RSQ=0.8585;ERATE=0.0015;THETA=0.0106;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 143245708 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.922;BRSQ=0.791;LDAF=0.2969;AVGPOST=0.9309;RSQ=0.8501;ERATE=0.0083;THETA=0.0009;AC=663;AN=2184 GT:DS:GL:BD 0.30357143 0 1 143245922 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.938;LDAF=0.3110;AVGPOST=0.9736;RSQ=0.9576;ERATE=0.0007;THETA=0.0014;AC=683;AN=2184 GT:DS:GL:BD 0.31272894 0 1 143245936 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.883;BRSQ=0.789;LDAF=0.4100;AVGPOST=0.8465;RSQ=0.7584;ERATE=0.0248;THETA=0.0012;AC=868;AN=2184 GT:DS:GL:BD 0.39743590 0 1 143245938 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.467;LDAF=0.0212;AVGPOST=0.9734;RSQ=0.4847;ERATE=0.0036;THETA=0.0032;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 143246139 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.590;LDAF=0.0146;AVGPOST=0.9854;RSQ=0.5824;ERATE=0.0014;THETA=0.0067;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 143246288 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0066;AVGPOST=0.9976;RSQ=0.8483;ERATE=0.0003;THETA=0.0016;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 143246619 rs113915518 GTTA G 39 PASS INDEL;BAVGPOST=0.988;BRSQ=0.385;LDAF=0.0276;AVGPOST=0.9584;RSQ=0.3700;ERATE=0.0037;THETA=0.0026;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 143246628 . GACA G 119 PASS INDEL;BAVGPOST=0.999;BRSQ=0.466;LDAF=0.0060;AVGPOST=0.9921;RSQ=0.4341;ERATE=0.0011;THETA=0.0064;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 143246645 . G GTGC 167 PASS INDEL;BAVGPOST=0.986;BRSQ=0.119;LDAF=0.0539;AVGPOST=0.9077;RSQ=0.2835;ERATE=0.0056;THETA=0.0012;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 143247233 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.709;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7571;ERATE=0.0003;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143247245 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5188;ERATE=0.0004;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143247380 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.526;LDAF=0.0044;AVGPOST=0.9963;RSQ=0.6621;ERATE=0.0008;THETA=0.0014;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 143247462 . AATG A 9 PASS INDEL;BAVGPOST=0.987;BRSQ=0.187;LDAF=0.0094;AVGPOST=0.9888;RSQ=0.5146;ERATE=0.0012;THETA=0.0040;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 143247508 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.608;LDAF=0.0051;AVGPOST=0.9959;RSQ=0.6659;ERATE=0.0007;THETA=0.0026;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 143247520 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.992;LDAF=0.3132;AVGPOST=0.9862;RSQ=0.9777;ERATE=0.0010;THETA=0.0043;AC=682;AN=2184 GT:DS:GL:BD 0.31227106 0 1 143247783 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.8957;ERATE=0.0004;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143248168 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5672;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143248211 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0009;AVGPOST=0.9988;RSQ=0.4304;ERATE=0.0005;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143248231 rs71582745 A AC 19294 PASS INDEL;BAVGPOST=0.956;BRSQ=0.914;LDAF=0.3132;AVGPOST=0.9507;RSQ=0.9186;ERATE=0.0098;THETA=0.0018;AC=675;AN=2184 GT:DS:GL:BD 0.30906594 0 1 143248384 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.649;LDAF=0.0530;AVGPOST=0.9824;RSQ=0.8642;ERATE=0.0006;THETA=0.0040;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 143248422 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.820;LDAF=0.0565;AVGPOST=0.9874;RSQ=0.9052;ERATE=0.0005;THETA=0.0033;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 143248460 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.597;LDAF=0.0385;AVGPOST=0.9765;RSQ=0.7801;ERATE=0.0008;THETA=0.0014;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 143248462 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5589;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143248686 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4371;ERATE=0.0006;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143248727 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.572;LDAF=0.0077;AVGPOST=0.9922;RSQ=0.5775;ERATE=0.0016;THETA=0.0012;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 143248744 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0114;AVGPOST=0.9910;RSQ=0.6998;ERATE=0.0007;THETA=0.0010;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 143248793 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.733;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4335;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143248847 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.737;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.3064;ERATE=0.0005;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143250126 . CA C 128 PASS INDEL;BAVGPOST=0.955;BRSQ=0.292;LDAF=0.0316;AVGPOST=0.9702;RSQ=0.6514;ERATE=0.0023;THETA=0.0045;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 143250543 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.7097;ERATE=0.0004;THETA=0.0024;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143251524 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6374;ERATE=0.0008;THETA=0.0028;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143251974 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6574;ERATE=0.0004;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143251993 . T TA 91 PASS INDEL;BAVGPOST=0.992;BRSQ=0.587;LDAF=0.0115;AVGPOST=0.9895;RSQ=0.6290;ERATE=0.0025;THETA=0.0013;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 143252009 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.658;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6581;ERATE=0.0003;THETA=0.0050;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143252018 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.884;LDAF=0.0086;AVGPOST=0.9956;RSQ=0.8085;ERATE=0.0005;THETA=0.0011;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 143252216 . GATTA G 3222 PASS INDEL;BAVGPOST=0.905;BRSQ=0.365;LDAF=0.1324;AVGPOST=0.8284;RSQ=0.3557;ERATE=0.0178;THETA=0.0006;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 143252304 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.941;LDAF=0.0345;AVGPOST=0.9887;RSQ=0.8674;ERATE=0.0006;THETA=0.0016;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 143252323 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.902;BRSQ=0.799;LDAF=0.2800;AVGPOST=0.9389;RSQ=0.9058;ERATE=0.0018;THETA=0.0045;AC=631;AN=2184 GT:DS:GL:BD 0.28891942 0 1 143252377 . TA T 282 PASS INDEL;BAVGPOST=0.998;BRSQ=0.610;LDAF=0.0107;AVGPOST=0.9846;RSQ=0.4224;ERATE=0.0016;THETA=0.0034;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 143252605 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6205;ERATE=0.0006;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143252607 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.712;LDAF=0.0204;AVGPOST=0.9825;RSQ=0.6749;ERATE=0.0010;THETA=0.0015;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 143252618 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.908;LDAF=0.0093;AVGPOST=0.9941;RSQ=0.7538;ERATE=0.0008;THETA=0.0029;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 143253700 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.727;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.3924;ERATE=0.0005;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143254525 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0029;AVGPOST=0.9975;RSQ=0.6182;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143254649 . GA G 26 PASS INDEL;BAVGPOST=0.994;BRSQ=0.295;LDAF=0.0089;AVGPOST=0.9888;RSQ=0.4855;ERATE=0.0007;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 143256336 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.869;BRSQ=0.338;LDAF=0.9032;AVGPOST=0.8728;RSQ=0.4463;ERATE=0.0068;THETA=0.0027;AC=2086;AN=2184 GT:DS:GL:BD 0.95512819 1 1 143256639 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5198;ERATE=0.0004;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143256640 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.935;LDAF=0.0604;AVGPOST=0.9947;RSQ=0.9621;ERATE=0.0007;THETA=0.0050;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 143258590 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.999;LDAF=0.3130;AVGPOST=0.9909;RSQ=0.9856;ERATE=0.0005;THETA=0.0022;AC=686;AN=2184 GT:DS:GL:BD 0.31410256 0 1 143258603 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0024;AVGPOST=0.9981;RSQ=0.6577;ERATE=0.0006;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143258865 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0619;AVGPOST=0.9962;RSQ=0.9735;ERATE=0.0004;THETA=0.0025;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 143259128 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.939;BRSQ=0.506;LDAF=0.9382;AVGPOST=0.9316;RSQ=0.5603;ERATE=0.0017;THETA=0.0010;AC=2101;AN=2184 GT:DS:GL:BD 0.96199632 1 1 143259170 . CAT C 18 PASS INDEL;BAVGPOST=0.999;BRSQ=0.756;LDAF=0.0041;AVGPOST=0.9947;RSQ=0.4359;ERATE=0.0016;THETA=0.0079;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143259435 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0027;AVGPOST=0.9965;RSQ=0.4237;ERATE=0.0005;THETA=0.0035;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143259973 . CGA C 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.711;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5519;ERATE=0.0004;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143259979 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.719;LDAF=0.0431;AVGPOST=0.9714;RSQ=0.7394;ERATE=0.0033;THETA=0.0015;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 143261009 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.710;LDAF=0.0060;AVGPOST=0.9979;RSQ=0.8413;ERATE=0.0004;THETA=0.0065;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 143261917 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.858;LDAF=0.0826;AVGPOST=0.9769;RSQ=0.8853;ERATE=0.0009;THETA=0.0011;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 143261935 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.757;LDAF=0.0049;AVGPOST=0.9953;RSQ=0.6006;ERATE=0.0014;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 143261952 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.823;LDAF=0.0870;AVGPOST=0.9708;RSQ=0.8694;ERATE=0.0005;THETA=0.0018;AC=179;AN=2184 GT:DS:GL:BD 0.08195971 0 1 143262013 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0024;AVGPOST=0.9985;RSQ=0.7430;ERATE=0.0005;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143262037 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.960;LDAF=0.2996;AVGPOST=0.9766;RSQ=0.9602;ERATE=0.0012;THETA=0.0079;AC=663;AN=2184 GT:DS:GL:BD 0.30357143 0 1 143262060 . GCATCC G 147 PASS INDEL;BAVGPOST=0.998;BRSQ=0.744;LDAF=0.0086;AVGPOST=0.9919;RSQ=0.6089;ERATE=0.0017;THETA=0.0107;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 143262166 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.757;LDAF=0.0037;AVGPOST=0.9966;RSQ=0.6074;ERATE=0.0005;THETA=0.0038;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143262185 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.942;LDAF=0.3378;AVGPOST=0.9618;RSQ=0.9432;ERATE=0.0065;THETA=0.0012;AC=745;AN=2184 GT:DS:GL:BD 0.34111720 0 1 143262197 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.667;LDAF=0.0020;AVGPOST=0.9982;RSQ=0.6147;ERATE=0.0007;THETA=0.0033;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143262578 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.555;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.3254;ERATE=0.0004;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143262599 . A AC 5968 PASS INDEL;BAVGPOST=0.884;BRSQ=0.593;LDAF=0.1882;AVGPOST=0.8852;RSQ=0.7365;ERATE=0.0072;THETA=0.0062;AC=358;AN=2184 GT:DS:GL:BD 0.16391942 0 1 143262600 . C CA 1528 PASS INDEL;BAVGPOST=0.886;BRSQ=0.595;LDAF=0.1606;AVGPOST=0.9026;RSQ=0.7552;ERATE=0.0009;THETA=0.0012;AC=323;AN=2184 GT:DS:GL:BD 0.14789377 0 1 143263802 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.954;LDAF=0.3181;AVGPOST=0.9702;RSQ=0.9555;ERATE=0.0016;THETA=0.0022;AC=698;AN=2184 GT:DS:GL:BD 0.31959707 0 1 143263827 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.732;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5394;ERATE=0.0004;THETA=0.0095;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143264142 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143264171 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143264198 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0004;THETA=0.0036;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143264344 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7741;ERATE=0.0004;THETA=0.0071;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143264377 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.942;BRSQ=0.872;LDAF=0.3149;AVGPOST=0.9319;RSQ=0.8717;ERATE=0.0009;THETA=0.0071;AC=679;AN=2184 GT:DS:GL:BD 0.31089744 0 1 143265013 . CAAA C 949 PASS INDEL;BAVGPOST=0.988;BRSQ=0.784;LDAF=0.0380;AVGPOST=0.9753;RSQ=0.7224;ERATE=0.0113;THETA=0.0024;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 143266107 . C CA 187 PASS INDEL;BAVGPOST=0.927;BRSQ=0.237;LDAF=0.0537;AVGPOST=0.9203;RSQ=0.3406;ERATE=0.0072;THETA=0.0042;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 143266170 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.623;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6227;ERATE=0.0005;THETA=0.0047;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143266217 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.848;LDAF=0.0040;AVGPOST=0.9981;RSQ=0.8010;ERATE=0.0008;THETA=0.0021;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 143266250 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.838;LDAF=0.0511;AVGPOST=0.9852;RSQ=0.8912;ERATE=0.0005;THETA=0.0066;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 143266439 rs71286790 A ATT 659 PASS INDEL;BAVGPOST=0.643;BRSQ=0.144;LDAF=0.2824;AVGPOST=0.6461;RSQ=0.2593;ERATE=0.0288;THETA=0.0057;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 143266535 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.649;LDAF=0.0028;AVGPOST=0.9987;RSQ=0.7832;ERATE=0.0005;THETA=0.0060;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143266977 . TCA T 86 PASS INDEL;BAVGPOST=0.990;BRSQ=0.515;LDAF=0.0143;AVGPOST=0.9847;RSQ=0.5636;ERATE=0.0017;THETA=0.0009;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 143267288 . CA C 104 PASS INDEL;BAVGPOST=0.999;BRSQ=0.719;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.4397;ERATE=0.0006;THETA=0.0038;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143269235 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.600;LDAF=0.0077;AVGPOST=0.9926;RSQ=0.5967;ERATE=0.0016;THETA=0.0057;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 143269246 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.907;BRSQ=0.391;LDAF=0.0944;AVGPOST=0.9055;RSQ=0.6089;ERATE=0.0060;THETA=0.0092;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 143269435 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.591;LDAF=0.0025;AVGPOST=0.9960;RSQ=0.2937;ERATE=0.0007;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143269557 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.438;LDAF=0.0304;AVGPOST=0.9724;RSQ=0.6498;ERATE=0.0025;THETA=0.0058;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 143269606 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.538;LDAF=0.0074;AVGPOST=0.9927;RSQ=0.6178;ERATE=0.0012;THETA=0.0049;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 143269615 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5149;ERATE=0.0005;THETA=0.0054;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143269636 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.852;BRSQ=0.569;LDAF=0.1501;AVGPOST=0.8778;RSQ=0.6635;ERATE=0.0083;THETA=0.0042;AC=260;AN=2184 GT:DS:GL:BD 0.11904762 0 1 143269836 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.699;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.6102;ERATE=0.0004;THETA=0.0101;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143269875 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.651;LDAF=0.9542;AVGPOST=0.9553;RSQ=0.6265;ERATE=0.0019;THETA=0.0044;AC=2116;AN=2184 GT:DS:GL:BD 0.96886444 1 1 143270191 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.944;BRSQ=0.434;LDAF=0.0523;AVGPOST=0.9479;RSQ=0.5782;ERATE=0.0092;THETA=0.0009;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 143270283 . TC T 7230 PASS INDEL;BAVGPOST=0.805;BRSQ=0.395;LDAF=0.2502;AVGPOST=0.7739;RSQ=0.4464;ERATE=0.0427;THETA=0.0036;AC=311;AN=2184 GT:DS:GL:BD 0.14239927 0 1 143270284 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.941;LDAF=0.3166;AVGPOST=0.9356;RSQ=0.8960;ERATE=0.0036;THETA=0.0036;AC=694;AN=2184 GT:DS:GL:BD 0.31776556 0 1 143270300 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.894;LDAF=0.0340;AVGPOST=0.9749;RSQ=0.6862;ERATE=0.0007;THETA=0.0075;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 143270331 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.686;LDAF=0.0033;AVGPOST=0.9944;RSQ=0.2134;ERATE=0.0012;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143270636 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.703;LDAF=0.0276;AVGPOST=0.9771;RSQ=0.6638;ERATE=0.0013;THETA=0.0168;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 143270648 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.602;LDAF=0.0050;AVGPOST=0.9926;RSQ=0.3568;ERATE=0.0011;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143270835 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.291;LDAF=0.0064;AVGPOST=0.9914;RSQ=0.4195;ERATE=0.0013;THETA=0.0070;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143270842 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.913;BRSQ=0.839;LDAF=0.3638;AVGPOST=0.8736;RSQ=0.7982;ERATE=0.0059;THETA=0.0104;AC=769;AN=2184 GT:DS:GL:BD 0.35210621 0 1 143271058 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.590;LDAF=0.0225;AVGPOST=0.9781;RSQ=0.6067;ERATE=0.0006;THETA=0.0099;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 143271084 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.638;LDAF=0.0034;AVGPOST=0.9952;RSQ=0.3531;ERATE=0.0010;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143271102 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.497;LDAF=0.0064;AVGPOST=0.9928;RSQ=0.5599;ERATE=0.0006;THETA=0.0036;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 143271156 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.267;LDAF=0.0203;AVGPOST=0.9691;RSQ=0.3947;ERATE=0.0028;THETA=0.0078;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 143271162 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.216;LDAF=0.0069;AVGPOST=0.9892;RSQ=0.3524;ERATE=0.0023;THETA=0.0044;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143272358 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.820;LDAF=0.0419;AVGPOST=0.9838;RSQ=0.8464;ERATE=0.0007;THETA=0.0068;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 143272512 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.950;BRSQ=0.904;LDAF=0.3256;AVGPOST=0.9484;RSQ=0.9200;ERATE=0.0015;THETA=0.0144;AC=713;AN=2184 GT:DS:GL:BD 0.32646519 0 1 143272536 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.647;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5126;ERATE=0.0005;THETA=0.0063;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143272544 . CAG C 188 PASS INDEL;BAVGPOST=0.996;BRSQ=0.722;LDAF=0.0083;AVGPOST=0.9942;RSQ=0.7003;ERATE=0.0027;THETA=0.0082;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 143272545 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4734;ERATE=0.0005;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143272546 . GA G 320 PASS INDEL;BAVGPOST=0.980;BRSQ=0.633;LDAF=0.0284;AVGPOST=0.9765;RSQ=0.6774;ERATE=0.0030;THETA=0.0112;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 143272774 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.770;LDAF=0.0698;AVGPOST=0.9618;RSQ=0.7960;ERATE=0.0010;THETA=0.0072;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 143272917 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.775;LDAF=0.0060;AVGPOST=0.9970;RSQ=0.7857;ERATE=0.0004;THETA=0.0049;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 143273377 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.399;LDAF=0.0019;AVGPOST=0.9977;RSQ=0.5542;ERATE=0.0007;THETA=0.0024;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143274242 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7679;ERATE=0.0004;THETA=0.0137;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143274258 . AC A 275 PASS INDEL;BAVGPOST=0.998;BRSQ=0.688;LDAF=0.0045;AVGPOST=0.9968;RSQ=0.6898;ERATE=0.0007;THETA=0.0044;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 143274266 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.848;LDAF=0.0039;AVGPOST=0.9986;RSQ=0.8500;ERATE=0.0005;THETA=0.0083;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 143274372 . T TATTG 212 PASS INDEL;BAVGPOST=0.996;BRSQ=0.694;LDAF=0.0099;AVGPOST=0.9897;RSQ=0.5426;ERATE=0.0024;THETA=0.0085;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 143274464 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0019;AVGPOST=0.9993;RSQ=0.8494;ERATE=0.0004;THETA=0.0063;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143274494 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5611;ERATE=0.0005;THETA=0.0122;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143274514 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.4759;ERATE=0.0006;THETA=0.0138;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143274617 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.953;BRSQ=0.518;LDAF=0.0592;AVGPOST=0.9415;RSQ=0.5837;ERATE=0.0073;THETA=0.0037;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 143274643 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.908;BRSQ=0.752;LDAF=0.1955;AVGPOST=0.9404;RSQ=0.8697;ERATE=0.0009;THETA=0.0096;AC=416;AN=2184 GT:DS:GL:BD 0.19047619 0 1 143274736 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.761;LDAF=0.0027;AVGPOST=0.9981;RSQ=0.6749;ERATE=0.0008;THETA=0.0277;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143275107 rs113148680 G GA 54 PASS INDEL;BAVGPOST=0.995;BRSQ=0.509;LDAF=0.0100;AVGPOST=0.9853;RSQ=0.3910;ERATE=0.0023;THETA=0.0118;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 143275322 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.916;BRSQ=0.594;LDAF=0.1398;AVGPOST=0.8958;RSQ=0.6147;ERATE=0.0394;THETA=0.0124;AC=225;AN=2184 GT:DS:GL:BD 0.10302198 0 1 143276409 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.826;BRSQ=0.406;LDAF=0.2362;AVGPOST=0.7850;RSQ=0.4452;ERATE=0.0484;THETA=0.0062;AC=310;AN=2184 GT:DS:GL:BD 0.14194140 0 1 143276449 rs74209891 AC A 8082 PASS INDEL;BAVGPOST=0.735;BRSQ=0.423;LDAF=0.4001;AVGPOST=0.7435;RSQ=0.5207;ERATE=0.0401;THETA=0.0054;AC=770;AN=2184 GT:DS:GL:BD 0.35256410 0 1 143276604 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.777;BRSQ=0.406;LDAF=0.3141;AVGPOST=0.7781;RSQ=0.5071;ERATE=0.0360;THETA=0.0016;AC=499;AN=2184 GT:DS:GL:BD 0.22847985 0 1 143276738 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.324;LDAF=0.0356;AVGPOST=0.9477;RSQ=0.3511;ERATE=0.0049;THETA=0.0208;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 143276863 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.709;BRSQ=0.338;LDAF=0.3521;AVGPOST=0.7347;RSQ=0.4131;ERATE=0.0460;THETA=0.0088;AC=550;AN=2184 GT:DS:GL:BD 0.25183150 0 1 143276892 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.905;BRSQ=0.677;LDAF=0.1830;AVGPOST=0.9065;RSQ=0.7471;ERATE=0.0040;THETA=0.0123;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 143276924 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.877;BRSQ=0.510;LDAF=0.1837;AVGPOST=0.8502;RSQ=0.5537;ERATE=0.0214;THETA=0.0068;AC=265;AN=2184 GT:DS:GL:BD 0.12133700 0 1 143277108 . GAA G 903 PASS INDEL;BAVGPOST=0.831;BRSQ=0.314;LDAF=0.1539;AVGPOST=0.8344;RSQ=0.4557;ERATE=0.0173;THETA=0.0051;AC=184;AN=2184 GT:DS:GL:BD 0.08424909 0 1 143277463 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.946;BRSQ=0.881;LDAF=0.2726;AVGPOST=0.9392;RSQ=0.8870;ERATE=0.0023;THETA=0.0059;AC=607;AN=2184 GT:DS:GL:BD 0.27793041 0 1 143277469 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.660;LDAF=0.0048;AVGPOST=0.9948;RSQ=0.5145;ERATE=0.0007;THETA=0.0063;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143278212 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.853;BRSQ=0.485;LDAF=0.2160;AVGPOST=0.8339;RSQ=0.5406;ERATE=0.0340;THETA=0.0087;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 143278237 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.862;BRSQ=0.488;LDAF=0.1922;AVGPOST=0.8527;RSQ=0.5694;ERATE=0.0301;THETA=0.0096;AC=306;AN=2184 GT:DS:GL:BD 0.14010990 0 1 143279833 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.904;LDAF=0.0380;AVGPOST=0.9918;RSQ=0.9197;ERATE=0.0004;THETA=0.0028;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 143279837 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5729;ERATE=0.0005;THETA=0.0109;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143280614 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.822;LDAF=0.0130;AVGPOST=0.9960;RSQ=0.8604;ERATE=0.0004;THETA=0.0067;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 143281133 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.879;BRSQ=0.705;LDAF=0.2544;AVGPOST=0.8925;RSQ=0.7762;ERATE=0.0093;THETA=0.0023;AC=547;AN=2184 GT:DS:GL:BD 0.25045788 0 1 143281274 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.653;LDAF=0.0543;AVGPOST=0.9593;RSQ=0.6834;ERATE=0.0064;THETA=0.0049;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 143281280 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.641;LDAF=0.0077;AVGPOST=0.9947;RSQ=0.7182;ERATE=0.0005;THETA=0.0115;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 143281318 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.995;LDAF=0.3109;AVGPOST=0.9792;RSQ=0.9682;ERATE=0.0007;THETA=0.0056;AC=684;AN=2184 GT:DS:GL:BD 0.31318682 0 1 143281326 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6010;ERATE=0.0004;THETA=0.0059;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143281379 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143281383 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7645;ERATE=0.0004;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143281469 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0032;AVGPOST=0.9989;RSQ=0.8579;ERATE=0.0004;THETA=0.0065;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 143282327 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0026;AVGPOST=0.9987;RSQ=0.8074;ERATE=0.0004;THETA=0.0042;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143282839 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.635;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6960;ERATE=0.0004;THETA=0.0107;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143282857 . AG A 180 PASS INDEL;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0039;AVGPOST=0.9984;RSQ=0.8251;ERATE=0.0004;THETA=0.0024;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 143283020 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9007;ERATE=0.0005;THETA=0.0057;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143283095 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.947;BRSQ=0.659;LDAF=0.0986;AVGPOST=0.9354;RSQ=0.6917;ERATE=0.0214;THETA=0.0036;AC=175;AN=2184 GT:DS:GL:BD 0.08012821 0 1 143284259 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.923;BRSQ=0.805;LDAF=0.2570;AVGPOST=0.9272;RSQ=0.8619;ERATE=0.0035;THETA=0.0010;AC=568;AN=2184 GT:DS:GL:BD 0.26007327 0 1 143284565 . CCT C 140 PASS INDEL;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4656;ERATE=0.0004;THETA=0.0065;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143284577 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.6858;ERATE=0.0004;THETA=0.0031;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143284584 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.746;LDAF=0.0457;AVGPOST=0.9843;RSQ=0.8659;ERATE=0.0004;THETA=0.0045;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 143284668 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.934;LDAF=0.3022;AVGPOST=0.9809;RSQ=0.9707;ERATE=0.0006;THETA=0.0018;AC=663;AN=2184 GT:DS:GL:BD 0.30357143 0 1 143284685 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.940;LDAF=0.3243;AVGPOST=0.9780;RSQ=0.9668;ERATE=0.0016;THETA=0.0051;AC=710;AN=2184 GT:DS:GL:BD 0.32509157 0 1 143284851 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.748;LDAF=0.0254;AVGPOST=0.9874;RSQ=0.8043;ERATE=0.0008;THETA=0.0018;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 143285212 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0083;AVGPOST=0.9938;RSQ=0.6803;ERATE=0.0013;THETA=0.0022;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 143285256 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.863;BRSQ=0.615;LDAF=0.1823;AVGPOST=0.8766;RSQ=0.7077;ERATE=0.0067;THETA=0.0039;AC=339;AN=2184 GT:DS:GL:BD 0.15521978 0 1 143285878 . G GT 269 PASS INDEL;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5030;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143285994 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.914;LDAF=0.0559;AVGPOST=0.9883;RSQ=0.9174;ERATE=0.0006;THETA=0.0043;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 143286338 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.952;BRSQ=0.915;LDAF=0.3170;AVGPOST=0.9644;RSQ=0.9474;ERATE=0.0037;THETA=0.0031;AC=699;AN=2184 GT:DS:GL:BD 0.32005495 0 1 143286342 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.642;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6213;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143286349 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7374;ERATE=0.0004;THETA=0.0035;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143287179 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4979;ERATE=0.0004;THETA=0.0086;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143287271 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.996;LDAF=0.3149;AVGPOST=0.9840;RSQ=0.9746;ERATE=0.0007;THETA=0.0027;AC=692;AN=2184 GT:DS:GL:BD 0.31684983 0 1 143287285 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.645;LDAF=0.0191;AVGPOST=0.9834;RSQ=0.6603;ERATE=0.0017;THETA=0.0011;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 143287314 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.592;LDAF=0.0238;AVGPOST=0.9786;RSQ=0.6257;ERATE=0.0011;THETA=0.0013;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 143287718 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.613;LDAF=0.0073;AVGPOST=0.9938;RSQ=0.6480;ERATE=0.0006;THETA=0.0050;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 143287726 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.525;LDAF=0.0247;AVGPOST=0.9788;RSQ=0.6814;ERATE=0.0010;THETA=0.0015;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 143287769 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.602;LDAF=0.0176;AVGPOST=0.9827;RSQ=0.5890;ERATE=0.0011;THETA=0.0045;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 143287772 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.603;LDAF=0.0193;AVGPOST=0.9830;RSQ=0.6675;ERATE=0.0008;THETA=0.0070;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 143287773 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.726;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.3949;ERATE=0.0005;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143287816 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.7605;ERATE=0.0007;THETA=0.0022;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143287840 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.703;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6005;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143287991 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.953;BRSQ=0.711;LDAF=0.0851;AVGPOST=0.9615;RSQ=0.8207;ERATE=0.0008;THETA=0.0039;AC=171;AN=2184 GT:DS:GL:BD 0.07829671 0 1 143288063 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.505;LDAF=0.0126;AVGPOST=0.9827;RSQ=0.4547;ERATE=0.0029;THETA=0.0042;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 143288113 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.591;LDAF=0.0079;AVGPOST=0.9931;RSQ=0.6385;ERATE=0.0006;THETA=0.0016;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 143288242 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.918;LDAF=0.2932;AVGPOST=0.9637;RSQ=0.9388;ERATE=0.0007;THETA=0.0032;AC=655;AN=2184 GT:DS:GL:BD 0.29990843 0 1 143288300 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.595;LDAF=0.0261;AVGPOST=0.9823;RSQ=0.7426;ERATE=0.0004;THETA=0.0031;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 143288309 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5601;ERATE=0.0004;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143288314 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.748;LDAF=0.0059;AVGPOST=0.9957;RSQ=0.6889;ERATE=0.0017;THETA=0.0036;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 143288315 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.777;LDAF=0.0036;AVGPOST=0.9990;RSQ=0.8716;ERATE=0.0003;THETA=0.0034;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 143288341 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.719;LDAF=0.0026;AVGPOST=0.9987;RSQ=0.7891;ERATE=0.0004;THETA=0.0047;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143288390 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0064;AVGPOST=0.9991;RSQ=0.9400;ERATE=0.0004;THETA=0.0011;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 143288520 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.919;BRSQ=0.393;LDAF=0.0786;AVGPOST=0.9199;RSQ=0.5534;ERATE=0.0088;THETA=0.0005;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 143288569 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.911;LDAF=0.0391;AVGPOST=0.9909;RSQ=0.9092;ERATE=0.0004;THETA=0.0017;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 143288630 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.665;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7694;ERATE=0.0004;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143288639 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.696;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5181;ERATE=0.0005;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143288961 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.595;LDAF=0.0072;AVGPOST=0.9932;RSQ=0.6297;ERATE=0.0005;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 143289021 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.221;LDAF=0.9975;AVGPOST=0.9966;RSQ=0.4128;ERATE=0.0007;THETA=0.0035;AC=2182;AN=2184 GT:DS:GL:BD 0.99908423 1 1 143289133 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.3941;ERATE=0.0005;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143289150 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0021;AVGPOST=0.9978;RSQ=0.5649;ERATE=0.0006;THETA=0.0083;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143289160 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.393;LDAF=0.9877;AVGPOST=0.9877;RSQ=0.6071;ERATE=0.0006;THETA=0.0018;AC=2163;AN=2184 GT:DS:GL:BD 0.99038464 1 1 143289327 . AC A 6 PASS INDEL;BAVGPOST=0.999;BRSQ=0.530;LDAF=0.0027;AVGPOST=0.9954;RSQ=0.2903;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143289466 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.790;LDAF=0.0308;AVGPOST=0.9827;RSQ=0.7819;ERATE=0.0011;THETA=0.0032;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 143289478 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0004;THETA=0.0067;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143289533 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.802;LDAF=0.0454;AVGPOST=0.9795;RSQ=0.8377;ERATE=0.0007;THETA=0.0007;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 143289536 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.820;LDAF=0.1128;AVGPOST=0.9581;RSQ=0.8533;ERATE=0.0012;THETA=0.0059;AC=227;AN=2184 GT:DS:GL:BD 0.10393773 0 1 143289925 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.424;LDAF=0.0020;AVGPOST=0.9974;RSQ=0.4044;ERATE=0.0007;THETA=0.0046;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143291128 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.531;LDAF=0.0316;AVGPOST=0.9663;RSQ=0.5467;ERATE=0.0021;THETA=0.0022;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 143291170 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5900;ERATE=0.0004;THETA=0.0067;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143291192 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5048;ERATE=0.0006;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143291239 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.464;LDAF=0.0386;AVGPOST=0.9597;RSQ=0.5499;ERATE=0.0039;THETA=0.0020;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 143291462 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.954;LDAF=0.3073;AVGPOST=0.9656;RSQ=0.9456;ERATE=0.0008;THETA=0.0057;AC=676;AN=2184 GT:DS:GL:BD 0.30952382 0 1 143291522 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.725;LDAF=0.0031;AVGPOST=0.9975;RSQ=0.6771;ERATE=0.0006;THETA=0.0064;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143291532 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0004;AVGPOST=0.9993;RSQ=0.2244;ERATE=0.0004;THETA=0.0028;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 143291641 . GGCT G 121 PASS INDEL;BAVGPOST=0.999;BRSQ=0.428;LDAF=0.0033;AVGPOST=0.9964;RSQ=0.5652;ERATE=0.0008;THETA=0.0016;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143291739 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.430;LDAF=0.0221;AVGPOST=0.9749;RSQ=0.5807;ERATE=0.0006;THETA=0.0037;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 143291778 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5491;ERATE=0.0005;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143291805 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6343;ERATE=0.0004;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143291806 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0003;THETA=0.0057;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143291826 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.594;LDAF=0.0059;AVGPOST=0.9931;RSQ=0.5617;ERATE=0.0004;THETA=0.0018;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 143291836 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.359;LDAF=0.0026;AVGPOST=0.9959;RSQ=0.4034;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143291855 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.874;LDAF=0.2146;AVGPOST=0.9459;RSQ=0.8993;ERATE=0.0007;THETA=0.0036;AC=457;AN=2184 GT:DS:GL:BD 0.20924908 0 1 143291971 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.774;LDAF=0.0434;AVGPOST=0.9811;RSQ=0.8310;ERATE=0.0013;THETA=0.0017;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 143291979 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.873;BRSQ=0.778;LDAF=0.4266;AVGPOST=0.8687;RSQ=0.8091;ERATE=0.0065;THETA=0.0100;AC=948;AN=2184 GT:DS:GL:BD 0.43406594 0 1 143292026 . GTGTT G 99 PASS INDEL;BAVGPOST=0.998;BRSQ=0.318;LDAF=0.0030;AVGPOST=0.9950;RSQ=0.2625;ERATE=0.0009;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143292176 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.985;LDAF=0.3099;AVGPOST=0.9682;RSQ=0.9520;ERATE=0.0010;THETA=0.0978;AC=675;AN=2184 GT:DS:GL:BD 0.30906594 0 1 143292284 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.723;LDAF=0.0022;AVGPOST=0.9982;RSQ=0.6354;ERATE=0.0005;THETA=0.0434;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143292300 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.736;LDAF=0.0217;AVGPOST=0.9859;RSQ=0.7540;ERATE=0.0006;THETA=0.0354;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 143292302 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7739;ERATE=0.0004;THETA=0.0593;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143292646 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5541;ERATE=0.0006;THETA=0.0639;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143343629 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.734;BRSQ=0.576;LDAF=0.5561;AVGPOST=0.7879;RSQ=0.6747;ERATE=0.0093;THETA=0.0412;AC=1233;AN=2184 GT:DS:GL:BD 0.56456041 1 1 143344296 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.337;LDAF=0.0129;AVGPOST=0.9793;RSQ=0.3094;ERATE=0.0019;THETA=0.0496;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 143349415 . AT A 767 PASS INDEL;BAVGPOST=0.864;BRSQ=0.214;LDAF=0.1093;AVGPOST=0.8400;RSQ=0.2821;ERATE=0.0109;THETA=0.0449;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 143353662 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.296;LDAF=0.0152;AVGPOST=0.9726;RSQ=0.1839;ERATE=0.0021;THETA=0.0302;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143356329 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.718;BRSQ=0.479;LDAF=0.3734;AVGPOST=0.7654;RSQ=0.5872;ERATE=0.0013;THETA=0.0093;AC=690;AN=2184 GT:DS:GL:BD 0.31593406 0 1 143356335 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.726;BRSQ=0.475;LDAF=0.3443;AVGPOST=0.7783;RSQ=0.5935;ERATE=0.0012;THETA=0.0181;AC=628;AN=2184 GT:DS:GL:BD 0.28754580 0 1 143356514 . TA T 855 PASS INDEL;BAVGPOST=0.627;BRSQ=0.070;LDAF=0.2654;AVGPOST=0.6190;RSQ=0.1489;ERATE=0.0307;THETA=0.0241;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 143357299 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.422;LDAF=0.0043;AVGPOST=0.9923;RSQ=0.1721;ERATE=0.0010;THETA=0.0430;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143358379 . CTT C 290 PASS INDEL;BAVGPOST=0.990;BRSQ=0.501;LDAF=0.0160;AVGPOST=0.9790;RSQ=0.3911;ERATE=0.0034;THETA=0.0313;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 143359383 . A AG 143 PASS INDEL;BAVGPOST=0.971;BRSQ=0.264;LDAF=0.0312;AVGPOST=0.9491;RSQ=0.2600;ERATE=0.0024;THETA=0.0189;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 143359386 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.270;LDAF=0.0029;AVGPOST=0.9950;RSQ=0.1903;ERATE=0.0011;THETA=0.0291;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143362426 . T TA 1974 PASS INDEL;BAVGPOST=0.915;BRSQ=0.454;LDAF=0.1086;AVGPOST=0.8842;RSQ=0.4547;ERATE=0.0201;THETA=0.0193;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 143366097 . AACTATG A 102 PASS INDEL;BAVGPOST=0.333;BRSQ=0.002;LDAF=0.1109;AVGPOST=0.7989;RSQ=0.0946;ERATE=0.0089;THETA=0.0122;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 143368804 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.371;LDAF=0.0365;AVGPOST=0.9494;RSQ=0.3755;ERATE=0.0042;THETA=0.0202;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 143372323 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.773;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6615;ERATE=0.0005;THETA=0.0152;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143372325 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.741;LDAF=0.0212;AVGPOST=0.9888;RSQ=0.7927;ERATE=0.0019;THETA=0.0335;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 143372331 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.731;LDAF=0.0087;AVGPOST=0.9947;RSQ=0.7271;ERATE=0.0026;THETA=0.0145;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 143375292 . G GTT 758 PASS INDEL;BAVGPOST=0.343;BRSQ=0.038;LDAF=0.3725;AVGPOST=0.5344;RSQ=0.1276;ERATE=0.0435;THETA=0.0096;AC=324;AN=2184 GT:DS:GL:BD 0.14835165 0 1 143375435 . TGAGATTACAGAC T 2489 PASS INDEL;BAVGPOST=0.846;BRSQ=0.100;LDAF=0.1373;AVGPOST=0.7720;RSQ=0.1682;ERATE=0.0090;THETA=0.0235;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 143375825 . AG A 338 PASS INDEL;BAVGPOST=0.333;BRSQ=0.008;LDAF=0.1618;AVGPOST=0.7242;RSQ=0.1110;ERATE=0.0063;THETA=0.0176;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 143376681 . AC A 339 PASS INDEL;BAVGPOST=0.982;BRSQ=0.375;LDAF=0.0187;AVGPOST=0.9762;RSQ=0.4793;ERATE=0.0011;THETA=0.0370;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 143376682 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.549;LDAF=0.0337;AVGPOST=0.9754;RSQ=0.6891;ERATE=0.0014;THETA=0.0218;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 143376703 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.900;BRSQ=0.802;LDAF=0.2467;AVGPOST=0.8990;RSQ=0.8225;ERATE=0.0006;THETA=0.0026;AC=474;AN=2184 GT:DS:GL:BD 0.21703297 0 1 143376705 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.900;BRSQ=0.802;LDAF=0.2461;AVGPOST=0.8991;RSQ=0.8229;ERATE=0.0005;THETA=0.0066;AC=474;AN=2184 GT:DS:GL:BD 0.21703297 0 1 143376716 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.624;LDAF=0.0020;AVGPOST=0.9970;RSQ=0.2902;ERATE=0.0007;THETA=0.0137;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143377584 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.879;BRSQ=0.343;LDAF=0.1057;AVGPOST=0.8740;RSQ=0.4180;ERATE=0.0112;THETA=0.0133;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 143377929 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.912;BRSQ=0.235;LDAF=0.0641;AVGPOST=0.9006;RSQ=0.3207;ERATE=0.0027;THETA=0.0177;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 143377935 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.928;BRSQ=0.250;LDAF=0.0500;AVGPOST=0.9205;RSQ=0.2940;ERATE=0.0032;THETA=0.0120;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 143378173 . AG A 805 PASS INDEL;BAVGPOST=0.995;BRSQ=0.672;LDAF=0.0090;AVGPOST=0.9917;RSQ=0.5924;ERATE=0.0029;THETA=0.0116;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 143384888 . CT C 145 PASS INDEL;BAVGPOST=0.991;BRSQ=0.750;LDAF=0.0178;AVGPOST=0.9869;RSQ=0.6937;ERATE=0.0023;THETA=0.0105;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 143385105 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.590;LDAF=0.0070;AVGPOST=0.9944;RSQ=0.6936;ERATE=0.0008;THETA=0.0077;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 143385154 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.639;LDAF=0.0339;AVGPOST=0.9750;RSQ=0.6865;ERATE=0.0045;THETA=0.0066;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 143385171 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5364;ERATE=0.0004;THETA=0.0205;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143385174 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.726;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4734;ERATE=0.0006;THETA=0.0051;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143385191 . C CA 22 PASS INDEL;BAVGPOST=0.998;BRSQ=0.589;LDAF=0.0041;AVGPOST=0.9957;RSQ=0.5724;ERATE=0.0006;THETA=0.0053;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 143385194 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.889;LDAF=0.0537;AVGPOST=0.9890;RSQ=0.9182;ERATE=0.0005;THETA=0.0075;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 143385769 . GT G 168 PASS INDEL;BAVGPOST=0.998;BRSQ=0.778;LDAF=0.0056;AVGPOST=0.9961;RSQ=0.7290;ERATE=0.0020;THETA=0.0141;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 143385861 . TA T 8 PASS INDEL;BAVGPOST=0.996;BRSQ=0.548;LDAF=0.0030;AVGPOST=0.9978;RSQ=0.7120;ERATE=0.0004;THETA=0.0168;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143386128 . AC A 7133 PASS INDEL;BAVGPOST=0.975;BRSQ=0.817;LDAF=0.0516;AVGPOST=0.9833;RSQ=0.8707;ERATE=0.0005;THETA=0.0170;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 143386261 . T TG 383 PASS INDEL;BAVGPOST=0.952;BRSQ=0.309;LDAF=0.0362;AVGPOST=0.9638;RSQ=0.5982;ERATE=0.0014;THETA=0.0187;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 143387485 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.766;BRSQ=0.494;LDAF=0.2712;AVGPOST=0.8035;RSQ=0.6085;ERATE=0.0132;THETA=0.0027;AC=469;AN=2184 GT:DS:GL:BD 0.21474358 0 1 143388062 . G GA 416 PASS INDEL;BAVGPOST=0.983;BRSQ=0.615;LDAF=0.0268;AVGPOST=0.9796;RSQ=0.7259;ERATE=0.0005;THETA=0.0076;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 143388127 . ATAT A 131 PASS INDEL;BAVGPOST=0.977;BRSQ=0.294;LDAF=0.0259;AVGPOST=0.9602;RSQ=0.3377;ERATE=0.0036;THETA=0.0136;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 143388458 . CAATA C 290 PASS INDEL;BAVGPOST=0.969;BRSQ=0.315;LDAF=0.0365;AVGPOST=0.9551;RSQ=0.4669;ERATE=0.0032;THETA=0.0101;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 143388651 . G GT 194 PASS INDEL;BAVGPOST=0.966;BRSQ=0.463;LDAF=0.0259;AVGPOST=0.9749;RSQ=0.6516;ERATE=0.0006;THETA=0.0110;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 143388748 . GC G 4645 PASS INDEL;BAVGPOST=0.877;BRSQ=0.554;LDAF=0.1375;AVGPOST=0.8896;RSQ=0.6196;ERATE=0.0012;THETA=0.0152;AC=214;AN=2184 GT:DS:GL:BD 0.09798535 0 1 143389310 . TG T 1099 PASS INDEL;BAVGPOST=0.956;BRSQ=0.511;LDAF=0.0410;AVGPOST=0.9625;RSQ=0.5982;ERATE=0.0034;THETA=0.0120;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 143389527 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0089;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143390685 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.925;BRSQ=0.748;LDAF=0.2276;AVGPOST=0.9188;RSQ=0.7789;ERATE=0.0031;THETA=0.0077;AC=452;AN=2184 GT:DS:GL:BD 0.20695971 0 1 143390976 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.718;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4414;ERATE=0.0005;THETA=0.0091;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143391039 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.452;LDAF=0.0047;AVGPOST=0.9946;RSQ=0.5581;ERATE=0.0004;THETA=0.0047;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 143391329 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.700;BRSQ=0.452;LDAF=0.3975;AVGPOST=0.7505;RSQ=0.5969;ERATE=0.0259;THETA=0.0054;AC=821;AN=2184 GT:DS:GL:BD 0.37591577 0 1 143391699 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.677;LDAF=0.0074;AVGPOST=0.9944;RSQ=0.7249;ERATE=0.0011;THETA=0.0067;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 143391905 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.475;LDAF=0.0255;AVGPOST=0.9771;RSQ=0.6569;ERATE=0.0011;THETA=0.0020;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 143392481 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.796;LDAF=0.0133;AVGPOST=0.9920;RSQ=0.7536;ERATE=0.0028;THETA=0.0014;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 143392655 . AAGT A 258 PASS INDEL;BAVGPOST=0.925;BRSQ=0.152;LDAF=0.0909;AVGPOST=0.8434;RSQ=0.1759;ERATE=0.0160;THETA=0.0048;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 143392779 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8020;ERATE=0.0003;THETA=0.0076;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143392788 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143393449 . G GAAA 251 PASS INDEL;BAVGPOST=0.977;BRSQ=0.292;LDAF=0.0242;AVGPOST=0.9639;RSQ=0.3506;ERATE=0.0029;THETA=0.0049;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 143394624 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8258;ERATE=0.0003;THETA=0.0057;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143395044 . AT A 12 PASS INDEL;BAVGPOST=0.993;BRSQ=0.556;LDAF=0.0148;AVGPOST=0.9807;RSQ=0.4567;ERATE=0.0031;THETA=0.0106;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 143395133 . GT G 754 PASS INDEL;BAVGPOST=0.997;BRSQ=0.799;LDAF=0.0080;AVGPOST=0.9961;RSQ=0.7814;ERATE=0.0020;THETA=0.0072;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 143395443 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.934;BRSQ=0.783;LDAF=0.2394;AVGPOST=0.9386;RSQ=0.8300;ERATE=0.0025;THETA=0.0016;AC=498;AN=2184 GT:DS:GL:BD 0.22802198 0 1 143396140 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.873;LDAF=0.0077;AVGPOST=0.9984;RSQ=0.9056;ERATE=0.0008;THETA=0.0025;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 143396615 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.631;LDAF=0.0024;AVGPOST=0.9973;RSQ=0.5381;ERATE=0.0007;THETA=0.0038;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143396739 . T TG 6 PASS INDEL;BAVGPOST=0.999;BRSQ=0.700;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4699;ERATE=0.0006;THETA=0.0053;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143396824 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.916;BRSQ=0.446;LDAF=0.0854;AVGPOST=0.9163;RSQ=0.5911;ERATE=0.0025;THETA=0.0021;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 143397145 . C CA 112 PASS INDEL;BAVGPOST=0.915;BRSQ=0.148;LDAF=0.0734;AVGPOST=0.8750;RSQ=0.1976;ERATE=0.0092;THETA=0.0070;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 143397662 . CAA C 7882 PASS INDEL;BAVGPOST=0.494;BRSQ=0.119;LDAF=0.4155;AVGPOST=0.6125;RSQ=0.2401;ERATE=0.0329;THETA=0.0125;AC=644;AN=2184 GT:DS:GL:BD 0.29487181 0 1 143397778 . A ATT 89 PASS INDEL;BAVGPOST=0.996;BRSQ=0.709;LDAF=0.0106;AVGPOST=0.9898;RSQ=0.6225;ERATE=0.0005;THETA=0.0023;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 143397911 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.817;LDAF=0.0069;AVGPOST=0.9968;RSQ=0.8061;ERATE=0.0011;THETA=0.0065;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 143398729 . ATT A 122 PASS INDEL;BAVGPOST=0.989;BRSQ=0.451;LDAF=0.0156;AVGPOST=0.9820;RSQ=0.5516;ERATE=0.0011;THETA=0.0053;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 143399083 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.794;BRSQ=0.256;LDAF=0.1967;AVGPOST=0.7821;RSQ=0.4393;ERATE=0.0144;THETA=0.0017;AC=250;AN=2184 GT:DS:GL:BD 0.11446887 0 1 143399176 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4003;ERATE=0.0005;THETA=0.0055;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143399651 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.851;BRSQ=0.277;LDAF=0.1351;AVGPOST=0.8501;RSQ=0.5331;ERATE=0.0072;THETA=0.0041;AC=203;AN=2184 GT:DS:GL:BD 0.09294872 0 1 143399733 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.934;BRSQ=0.779;LDAF=0.2338;AVGPOST=0.9345;RSQ=0.8248;ERATE=0.0045;THETA=0.0185;AC=482;AN=2184 GT:DS:GL:BD 0.22069597 0 1 143399779 . GT G 1028 PASS INDEL;BAVGPOST=0.983;BRSQ=0.597;LDAF=0.0260;AVGPOST=0.9752;RSQ=0.5591;ERATE=0.0053;THETA=0.0199;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 143400137 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.874;LDAF=0.1537;AVGPOST=0.9617;RSQ=0.8703;ERATE=0.0013;THETA=0.0184;AC=322;AN=2184 GT:DS:GL:BD 0.14743590 0 1 143400792 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0004;THETA=0.0287;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143400906 . GA G 32 PASS INDEL;BAVGPOST=0.975;BRSQ=0.338;LDAF=0.0343;AVGPOST=0.9478;RSQ=0.3232;ERATE=0.0052;THETA=0.0144;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 143400954 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.957;BRSQ=0.691;LDAF=0.0678;AVGPOST=0.9610;RSQ=0.7647;ERATE=0.0019;THETA=0.0095;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 143401063 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.748;BRSQ=0.410;LDAF=0.2917;AVGPOST=0.7707;RSQ=0.6079;ERATE=0.0122;THETA=0.0054;AC=561;AN=2184 GT:DS:GL:BD 0.25686812 0 1 143401926 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.884;BRSQ=0.786;LDAF=0.7192;AVGPOST=0.9186;RSQ=0.8089;ERATE=0.0014;THETA=0.0014;AC=1595;AN=2184 GT:DS:GL:BD 0.73031133 1 1 143402422 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.535;LDAF=0.0079;AVGPOST=0.9871;RSQ=0.2686;ERATE=0.0020;THETA=0.0197;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143402460 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.670;LDAF=0.0482;AVGPOST=0.9649;RSQ=0.7136;ERATE=0.0052;THETA=0.0129;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 143405479 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.785;LDAF=0.0922;AVGPOST=0.9656;RSQ=0.8285;ERATE=0.0137;THETA=0.0071;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 143407038 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.932;LDAF=0.1070;AVGPOST=0.9866;RSQ=0.9414;ERATE=0.0006;THETA=0.0019;AC=228;AN=2184 GT:DS:GL:BD 0.10439561 0 1 143407046 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.936;LDAF=0.1069;AVGPOST=0.9867;RSQ=0.9418;ERATE=0.0004;THETA=0.0085;AC=229;AN=2184 GT:DS:GL:BD 0.10485348 0 1 143407912 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.958;BRSQ=0.857;LDAF=0.1644;AVGPOST=0.9388;RSQ=0.8157;ERATE=0.0019;THETA=0.0071;AC=334;AN=2184 GT:DS:GL:BD 0.15293041 0 1 143407976 . AC A 96 PASS INDEL;BAVGPOST=0.910;BRSQ=0.098;LDAF=0.1082;AVGPOST=0.8174;RSQ=0.2179;ERATE=0.0073;THETA=0.0049;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 143408035 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.759;BRSQ=0.146;LDAF=0.2150;AVGPOST=0.6880;RSQ=0.2116;ERATE=0.0215;THETA=0.0112;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 143408681 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.694;LDAF=0.0921;AVGPOST=0.9490;RSQ=0.7539;ERATE=0.0151;THETA=0.0116;AC=170;AN=2184 GT:DS:GL:BD 0.07783883 0 1 143408817 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.750;BRSQ=0.580;LDAF=0.5012;AVGPOST=0.8083;RSQ=0.6929;ERATE=0.0024;THETA=0.0106;AC=1132;AN=2184 GT:DS:GL:BD 0.51831502 1 1 143409190 . TC T 133 PASS INDEL;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6574;ERATE=0.0007;THETA=0.0037;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143410782 rs71208378 C CA 588 PASS INDEL;BAVGPOST=0.975;BRSQ=0.586;LDAF=0.0373;AVGPOST=0.9652;RSQ=0.5817;ERATE=0.0117;THETA=0.0045;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 143411113 . TGTAA T 296 PASS INDEL;BAVGPOST=0.997;BRSQ=0.704;LDAF=0.0055;AVGPOST=0.9964;RSQ=0.7111;ERATE=0.0010;THETA=0.0012;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 143411738 . GAGA G 2423 PASS INDEL;BAVGPOST=0.994;BRSQ=0.888;LDAF=0.0274;AVGPOST=0.9949;RSQ=0.9227;ERATE=0.0011;THETA=0.0046;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 143411822 . TC T 9035 PASS INDEL;BAVGPOST=0.954;BRSQ=0.766;LDAF=0.1309;AVGPOST=0.9543;RSQ=0.8203;ERATE=0.0165;THETA=0.0083;AC=250;AN=2184 GT:DS:GL:BD 0.11446887 0 1 143413250 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143413531 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.904;BRSQ=0.843;LDAF=0.6393;AVGPOST=0.9245;RSQ=0.8262;ERATE=0.0023;THETA=0.0034;AC=1402;AN=2184 GT:DS:GL:BD 0.64194137 1 1 143414189 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.806;BRSQ=0.037;LDAF=0.8897;AVGPOST=0.8061;RSQ=0.1571;ERATE=0.0102;THETA=0.0103;AC=2137;AN=2184 GT:DS:GL:BD 0.97847986 1 1 143414191 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.760;BRSQ=0.032;LDAF=0.9027;AVGPOST=0.8244;RSQ=0.1541;ERATE=0.0089;THETA=0.0062;AC=2144;AN=2184 GT:DS:GL:BD 0.98168498 1 1 143414196 . G GGAATGAGTTCA 2628 PASS INDEL;BAVGPOST=0.377;BRSQ=0.031;LDAF=0.6653;AVGPOST=0.5783;RSQ=0.1742;ERATE=0.0221;THETA=0.0072;AC=1812;AN=2184 GT:DS:GL:BD 0.82967031 1 1 143414349 rs113645099 CGTA C 11670 PASS INDEL;BAVGPOST=0.736;BRSQ=0.313;LDAF=0.3031;AVGPOST=0.7527;RSQ=0.4463;ERATE=0.0350;THETA=0.0036;AC=449;AN=2184 GT:DS:GL:BD 0.20558608 0 1 143415765 . CT C 374 PASS INDEL;BAVGPOST=0.998;BRSQ=0.782;LDAF=0.0051;AVGPOST=0.9973;RSQ=0.7904;ERATE=0.0020;THETA=0.0028;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 143415828 . G GAGA 860 PASS INDEL;BAVGPOST=0.989;BRSQ=0.548;LDAF=0.0126;AVGPOST=0.9880;RSQ=0.5735;ERATE=0.0024;THETA=0.0024;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 143415892 . GA G 4445 PASS INDEL;BAVGPOST=0.990;BRSQ=0.868;LDAF=0.0405;AVGPOST=0.9892;RSQ=0.8819;ERATE=0.0051;THETA=0.0059;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 143416900 . GC G 2344 PASS INDEL;BAVGPOST=0.888;BRSQ=0.547;LDAF=0.1544;AVGPOST=0.9116;RSQ=0.7043;ERATE=0.0052;THETA=0.0098;AC=318;AN=2184 GT:DS:GL:BD 0.14560440 0 1 143416947 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.849;BRSQ=0.701;LDAF=0.5673;AVGPOST=0.8412;RSQ=0.7086;ERATE=0.0103;THETA=0.0059;AC=1270;AN=2184 GT:DS:GL:BD 0.58150184 1 1 143417378 . TG T 296 PASS INDEL;BAVGPOST=0.990;BRSQ=0.492;LDAF=0.0090;AVGPOST=0.9910;RSQ=0.5661;ERATE=0.0011;THETA=0.0023;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 143418338 . CCT C 16829 PASS INDEL;BAVGPOST=0.964;BRSQ=0.851;LDAF=0.1583;AVGPOST=0.9650;RSQ=0.8822;ERATE=0.0017;THETA=0.0191;AC=330;AN=2184 GT:DS:GL:BD 0.15109891 0 1 143418587 . GT G 87 PASS INDEL;BAVGPOST=0.999;BRSQ=0.658;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6443;ERATE=0.0005;THETA=0.0213;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143418691 . G GA 16 PASS INDEL;BAVGPOST=0.999;BRSQ=0.566;LDAF=0.0016;AVGPOST=0.9976;RSQ=0.3794;ERATE=0.0005;THETA=0.0140;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143419695 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.863;BRSQ=0.733;LDAF=0.5816;AVGPOST=0.8588;RSQ=0.7309;ERATE=0.0027;THETA=0.0066;AC=1310;AN=2184 GT:DS:GL:BD 0.59981686 1 1 143421220 . TA T 1163 PASS INDEL;BAVGPOST=0.988;BRSQ=0.702;LDAF=0.0225;AVGPOST=0.9900;RSQ=0.8184;ERATE=0.0008;THETA=0.0213;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 143421854 . A AG 68 PASS INDEL;BAVGPOST=0.994;BRSQ=0.419;LDAF=0.0056;AVGPOST=0.9926;RSQ=0.3893;ERATE=0.0014;THETA=0.0196;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143423460 rs113197697 A AG 2175 PASS INDEL;BAVGPOST=0.947;BRSQ=0.637;LDAF=0.0968;AVGPOST=0.9256;RSQ=0.6163;ERATE=0.0178;THETA=0.0143;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 143424294 . T TGAG 150 PASS INDEL;BAVGPOST=0.996;BRSQ=0.796;LDAF=0.0074;AVGPOST=0.9953;RSQ=0.7447;ERATE=0.0031;THETA=0.0183;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 143428107 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.783;BRSQ=0.590;LDAF=0.5281;AVGPOST=0.7842;RSQ=0.6501;ERATE=0.0022;THETA=0.0116;AC=1208;AN=2184 GT:DS:GL:BD 0.55311358 1 1 143428504 . T TG 46 PASS INDEL;BAVGPOST=0.767;BRSQ=0.023;LDAF=0.2015;AVGPOST=0.6636;RSQ=0.0969;ERATE=0.0218;THETA=0.0156;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 143432182 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.380;LDAF=0.0186;AVGPOST=0.9716;RSQ=0.3659;ERATE=0.0019;THETA=0.0015;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 143432185 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.210;LDAF=0.0093;AVGPOST=0.9829;RSQ=0.2133;ERATE=0.0016;THETA=0.0141;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143436404 . GC G 51 PASS INDEL;BAVGPOST=0.590;BRSQ=0.012;LDAF=0.1825;AVGPOST=0.6901;RSQ=0.1108;ERATE=0.0116;THETA=0.0081;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 143436409 . GT G 39 PASS INDEL;BAVGPOST=0.557;BRSQ=0.012;LDAF=0.1269;AVGPOST=0.7790;RSQ=0.1594;ERATE=0.0042;THETA=0.0147;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 143444963 . CAT C 88 PASS INDEL;BAVGPOST=0.984;BRSQ=0.221;LDAF=0.0221;AVGPOST=0.9607;RSQ=0.2073;ERATE=0.0035;THETA=0.0061;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143445011 . A AC 37 PASS INDEL;BAVGPOST=0.974;BRSQ=0.248;LDAF=0.0223;AVGPOST=0.9643;RSQ=0.3127;ERATE=0.0028;THETA=0.0103;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 143445102 . AC A 334 PASS INDEL;BAVGPOST=0.962;BRSQ=0.174;LDAF=0.0662;AVGPOST=0.8846;RSQ=0.2264;ERATE=0.0089;THETA=0.0052;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 143450718 . A AT 2696 PASS INDEL;BAVGPOST=0.978;BRSQ=0.797;LDAF=0.0691;AVGPOST=0.9666;RSQ=0.7712;ERATE=0.0136;THETA=0.0088;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 143451520 . T TTTAA 497 PASS INDEL;BAVGPOST=0.946;BRSQ=0.134;LDAF=0.0762;AVGPOST=0.8635;RSQ=0.1602;ERATE=0.0117;THETA=0.0095;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 143451830 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.817;BRSQ=0.704;LDAF=0.5382;AVGPOST=0.8210;RSQ=0.7167;ERATE=0.0022;THETA=0.0240;AC=1173;AN=2184 GT:DS:GL:BD 0.53708792 1 1 143453429 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.859;BRSQ=0.364;LDAF=0.1270;AVGPOST=0.8771;RSQ=0.5360;ERATE=0.0130;THETA=0.0209;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 143453643 rs78296026 G GA 620 PASS INDEL;BAVGPOST=0.905;BRSQ=0.194;LDAF=0.0890;AVGPOST=0.8571;RSQ=0.2515;ERATE=0.0106;THETA=0.0152;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 143453813 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.465;LDAF=0.0092;AVGPOST=0.9861;RSQ=0.3448;ERATE=0.0014;THETA=0.0151;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143453817 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.881;BRSQ=0.276;LDAF=0.1060;AVGPOST=0.8621;RSQ=0.4095;ERATE=0.0042;THETA=0.0138;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 143459293 . C CAA 2536 PASS INDEL;BAVGPOST=0.451;BRSQ=0.105;LDAF=0.4368;AVGPOST=0.5963;RSQ=0.2720;ERATE=0.0251;THETA=0.0181;AC=751;AN=2184 GT:DS:GL:BD 0.34386447 0 1 143459880 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.798;BRSQ=0.573;LDAF=0.3843;AVGPOST=0.8193;RSQ=0.6566;ERATE=0.0093;THETA=0.0049;AC=772;AN=2184 GT:DS:GL:BD 0.35347986 0 1 143459906 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.794;BRSQ=0.686;LDAF=0.4955;AVGPOST=0.7941;RSQ=0.7164;ERATE=0.0038;THETA=0.0194;AC=1082;AN=2184 GT:DS:GL:BD 0.49542123 0 1 143461924 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.836;BRSQ=0.508;LDAF=0.2529;AVGPOST=0.8433;RSQ=0.5831;ERATE=0.0141;THETA=0.0291;AC=444;AN=2184 GT:DS:GL:BD 0.20329671 0 1 143461950 rs112965568 TC T 8 PASS INDEL;BAVGPOST=0.982;BRSQ=0.329;LDAF=0.0249;AVGPOST=0.9592;RSQ=0.2802;ERATE=0.0040;THETA=0.0144;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 143462878 . A AT 1701 PASS INDEL;BAVGPOST=0.990;BRSQ=0.830;LDAF=0.0303;AVGPOST=0.9910;RSQ=0.8784;ERATE=0.0018;THETA=0.0082;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 143463643 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.495;LDAF=0.0050;AVGPOST=0.9917;RSQ=0.2589;ERATE=0.0008;THETA=0.0077;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143463776 . C CT 487 PASS INDEL;BAVGPOST=0.997;BRSQ=0.778;LDAF=0.0080;AVGPOST=0.9929;RSQ=0.6188;ERATE=0.0019;THETA=0.0053;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 143464471 rs67398727 GC G 2564 PASS INDEL;BAVGPOST=0.890;BRSQ=0.427;LDAF=0.1289;AVGPOST=0.8752;RSQ=0.4964;ERATE=0.0163;THETA=0.0055;AC=161;AN=2184 GT:DS:GL:BD 0.07371795 0 1 143465154 . CT C 318 PASS INDEL;BAVGPOST=0.994;BRSQ=0.557;LDAF=0.0110;AVGPOST=0.9844;RSQ=0.3568;ERATE=0.0030;THETA=0.0089;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 143465811 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.745;LDAF=0.0031;AVGPOST=0.9969;RSQ=0.6338;ERATE=0.0014;THETA=0.0170;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143465875 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.757;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6674;ERATE=0.0004;THETA=0.0184;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143465892 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.540;LDAF=0.0124;AVGPOST=0.9874;RSQ=0.6368;ERATE=0.0013;THETA=0.0166;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 143466398 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0058;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143467057 rs76730143 C CG 28 PASS INDEL;BAVGPOST=0.997;BRSQ=0.754;LDAF=0.0055;AVGPOST=0.9968;RSQ=0.7414;ERATE=0.0032;THETA=0.0078;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 143467386 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.763;BRSQ=0.423;LDAF=0.4450;AVGPOST=0.8108;RSQ=0.5212;ERATE=0.0287;THETA=0.0119;AC=898;AN=2184 GT:DS:GL:BD 0.41117215 0 1 143467643 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.718;LDAF=0.0048;AVGPOST=0.9958;RSQ=0.6623;ERATE=0.0025;THETA=0.0145;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 143467660 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.801;LDAF=0.0204;AVGPOST=0.9919;RSQ=0.8473;ERATE=0.0017;THETA=0.0075;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 143467682 rs79892366 G GAA 181223 PASS INDEL;BAVGPOST=0.997;BRSQ=0.725;LDAF=0.9942;AVGPOST=0.9957;RSQ=0.6875;ERATE=0.0023;THETA=0.0075;AC=2174;AN=2184 GT:DS:GL:BD 0.99542123 1 1 143467975 . C CT 951 PASS INDEL;BAVGPOST=0.827;BRSQ=0.260;LDAF=0.1664;AVGPOST=0.7791;RSQ=0.3131;ERATE=0.0221;THETA=0.0183;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 143468813 . TGG T 292 PASS INDEL;BAVGPOST=0.983;BRSQ=0.355;LDAF=0.0220;AVGPOST=0.9664;RSQ=0.3068;ERATE=0.0029;THETA=0.0158;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 143470253 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.856;BRSQ=0.386;LDAF=0.1543;AVGPOST=0.8424;RSQ=0.4772;ERATE=0.0193;THETA=0.0121;AC=192;AN=2184 GT:DS:GL:BD 0.08791209 0 1 143470267 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.516;LDAF=0.0034;AVGPOST=0.9941;RSQ=0.1936;ERATE=0.0010;THETA=0.0077;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143470425 . CT C 166 PASS INDEL;BAVGPOST=0.997;BRSQ=0.613;LDAF=0.0066;AVGPOST=0.9914;RSQ=0.4265;ERATE=0.0014;THETA=0.0130;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 143470625 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.703;LDAF=0.0753;AVGPOST=0.9631;RSQ=0.7787;ERATE=0.0045;THETA=0.0101;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 143470807 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.833;BRSQ=0.707;LDAF=0.4220;AVGPOST=0.8388;RSQ=0.7434;ERATE=0.0058;THETA=0.0089;AC=908;AN=2184 GT:DS:GL:BD 0.41575092 0 1 143470916 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0081;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143470956 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.786;LDAF=0.0158;AVGPOST=0.9918;RSQ=0.7897;ERATE=0.0009;THETA=0.0069;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 143471052 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4292;ERATE=0.0006;THETA=0.0151;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143471222 rs72455492 C CA 1043 PASS INDEL;BAVGPOST=0.871;BRSQ=0.013;LDAF=0.8431;AVGPOST=0.7301;RSQ=0.1184;ERATE=0.0217;THETA=0.0145;AC=2140;AN=2184 GT:DS:GL:BD 0.97985345 1 1 143471229 . A AAC 60 PASS INDEL;BAVGPOST=0.985;BRSQ=0.630;LDAF=0.0178;AVGPOST=0.9846;RSQ=0.6323;ERATE=0.0007;THETA=0.0029;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 143471230 . A AC 27 PASS INDEL;BAVGPOST=0.985;BRSQ=0.631;LDAF=0.0186;AVGPOST=0.9835;RSQ=0.6187;ERATE=0.0010;THETA=0.0189;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 143471843 . G GA 114 PASS INDEL;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0004;THETA=0.0216;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143472681 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7448;ERATE=0.0004;THETA=0.0167;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143472708 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.956;BRSQ=0.733;LDAF=0.0864;AVGPOST=0.9608;RSQ=0.7938;ERATE=0.0058;THETA=0.0050;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 143472722 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.780;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0065;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143472937 . CTT C 111 PASS INDEL;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0004;THETA=0.0181;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143472969 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.845;LDAF=0.0080;AVGPOST=0.9967;RSQ=0.8304;ERATE=0.0027;THETA=0.0082;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 143473042 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.795;LDAF=0.0817;AVGPOST=0.9718;RSQ=0.8346;ERATE=0.0074;THETA=0.0132;AC=163;AN=2184 GT:DS:GL:BD 0.07463370 0 1 143474837 . A AT 89 PASS INDEL;BAVGPOST=0.996;BRSQ=0.175;LDAF=0.0550;AVGPOST=0.8942;RSQ=0.1199;ERATE=0.0030;THETA=0.0157;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143475921 . CT C 120 PASS INDEL;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0004;THETA=0.0170;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143477827 . CTT C 864 PASS INDEL;BAVGPOST=0.972;BRSQ=0.577;LDAF=0.0403;AVGPOST=0.9601;RSQ=0.5503;ERATE=0.0061;THETA=0.0031;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 143478459 . TC T 70 PASS INDEL;BAVGPOST=0.996;BRSQ=0.655;LDAF=0.0066;AVGPOST=0.9930;RSQ=0.5169;ERATE=0.0005;THETA=0.0024;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 143478661 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.701;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4121;ERATE=0.0005;THETA=0.0245;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143479302 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.730;LDAF=0.0113;AVGPOST=0.9877;RSQ=0.5063;ERATE=0.0038;THETA=0.0119;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 143480047 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5594;ERATE=0.0004;THETA=0.0102;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143480064 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.869;BRSQ=0.827;LDAF=0.6403;AVGPOST=0.9032;RSQ=0.8289;ERATE=0.0026;THETA=0.0118;AC=1403;AN=2184 GT:DS:GL:BD 0.64239925 1 1 143481223 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.852;BRSQ=0.801;LDAF=0.5717;AVGPOST=0.8721;RSQ=0.8161;ERATE=0.0068;THETA=0.0213;AC=1265;AN=2184 GT:DS:GL:BD 0.57921243 1 1 143481720 . G GA 196 PASS INDEL;BAVGPOST=0.928;BRSQ=0.089;LDAF=0.1968;AVGPOST=0.6838;RSQ=0.1613;ERATE=0.0171;THETA=0.0012;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 143482127 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.826;BRSQ=0.747;LDAF=0.5519;AVGPOST=0.8413;RSQ=0.7790;ERATE=0.0100;THETA=0.0037;AC=1232;AN=2184 GT:DS:GL:BD 0.56410259 1 1 143482311 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.889;BRSQ=0.661;LDAF=0.2934;AVGPOST=0.8845;RSQ=0.7179;ERATE=0.0021;THETA=0.0077;AC=590;AN=2184 GT:DS:GL:BD 0.27014652 0 1 143482352 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.900;BRSQ=0.698;LDAF=0.3032;AVGPOST=0.9037;RSQ=0.7636;ERATE=0.0056;THETA=0.0015;AC=613;AN=2184 GT:DS:GL:BD 0.28067765 0 1 143482417 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.878;BRSQ=0.696;LDAF=0.3954;AVGPOST=0.8839;RSQ=0.7560;ERATE=0.0068;THETA=0.0039;AC=842;AN=2184 GT:DS:GL:BD 0.38553113 0 1 143482427 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.873;BRSQ=0.747;LDAF=0.4242;AVGPOST=0.8868;RSQ=0.8026;ERATE=0.0036;THETA=0.0131;AC=925;AN=2184 GT:DS:GL:BD 0.42353481 0 1 143483311 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5722;ERATE=0.0006;THETA=0.0037;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143483473 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.667;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8599;ERATE=0.0004;THETA=0.0052;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143483512 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0021;AVGPOST=0.9990;RSQ=0.8018;ERATE=0.0004;THETA=0.0133;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143483676 . A AG 154 PASS INDEL;BAVGPOST=0.985;BRSQ=0.373;LDAF=0.0239;AVGPOST=0.9616;RSQ=0.2695;ERATE=0.0036;THETA=0.0101;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 143483938 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.532;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4196;ERATE=0.0006;THETA=0.0088;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143486046 . CAGAGTGAGACCTT C 648 PASS INDEL;BAVGPOST=0.726;BRSQ=0.027;LDAF=0.1608;AVGPOST=0.7264;RSQ=0.1093;ERATE=0.0166;THETA=0.0237;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 143486642 . G GTA 6269 PASS INDEL;BAVGPOST=0.966;BRSQ=0.713;LDAF=0.0658;AVGPOST=0.9621;RSQ=0.7273;ERATE=0.0053;THETA=0.0050;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 143488692 . C CT 60 PASS INDEL;BAVGPOST=0.992;BRSQ=0.480;LDAF=0.0095;AVGPOST=0.9885;RSQ=0.5009;ERATE=0.0048;THETA=0.0207;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 143489439 . A AT 24 PASS INDEL;BAVGPOST=0.976;BRSQ=0.285;LDAF=0.0273;AVGPOST=0.9570;RSQ=0.2748;ERATE=0.0055;THETA=0.0178;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 143490424 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.793;LDAF=0.0488;AVGPOST=0.9810;RSQ=0.8303;ERATE=0.0068;THETA=0.0266;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 143490780 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.847;BRSQ=0.787;LDAF=0.5505;AVGPOST=0.8545;RSQ=0.7922;ERATE=0.0096;THETA=0.0372;AC=1221;AN=2184 GT:DS:GL:BD 0.55906594 1 1 143491307 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.855;BRSQ=0.846;LDAF=0.4928;AVGPOST=0.8725;RSQ=0.8496;ERATE=0.0006;THETA=0.0042;AC=1093;AN=2184 GT:DS:GL:BD 0.50045788 1 1 143491312 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.855;BRSQ=0.846;LDAF=0.4934;AVGPOST=0.8718;RSQ=0.8488;ERATE=0.0015;THETA=0.0251;AC=1093;AN=2184 GT:DS:GL:BD 0.50045788 1 1 143491817 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6194;ERATE=0.0006;THETA=0.0318;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143492606 . T TC 81 PASS INDEL;BAVGPOST=0.995;BRSQ=0.515;LDAF=0.0061;AVGPOST=0.9934;RSQ=0.5322;ERATE=0.0009;THETA=0.0149;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 143494456 rs71206413 TA T 5112 PASS INDEL;BAVGPOST=0.954;BRSQ=0.753;LDAF=0.1115;AVGPOST=0.9523;RSQ=0.7933;ERATE=0.0116;THETA=0.0354;AC=213;AN=2184 GT:DS:GL:BD 0.09752747 0 1 143494786 . TC T 97 PASS INDEL;BAVGPOST=0.993;BRSQ=0.269;LDAF=0.0246;AVGPOST=0.9556;RSQ=0.2280;ERATE=0.0037;THETA=0.0094;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 143495631 . C CT 346 PASS INDEL;BAVGPOST=0.984;BRSQ=0.543;LDAF=0.0297;AVGPOST=0.9613;RSQ=0.4158;ERATE=0.0112;THETA=0.0217;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 143496270 . C CT 1358 PASS INDEL;BAVGPOST=0.832;BRSQ=0.298;LDAF=0.1629;AVGPOST=0.8032;RSQ=0.3933;ERATE=0.0232;THETA=0.0104;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 143496351 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.664;LDAF=0.0601;AVGPOST=0.9541;RSQ=0.6721;ERATE=0.0149;THETA=0.0215;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 143496371 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8236;ERATE=0.0010;THETA=0.0148;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143496540 . GT G 2263 PASS INDEL;BAVGPOST=0.948;BRSQ=0.684;LDAF=0.0973;AVGPOST=0.9402;RSQ=0.7133;ERATE=0.0097;THETA=0.0037;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 143496547 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.753;LDAF=0.0055;AVGPOST=0.9975;RSQ=0.8081;ERATE=0.0005;THETA=0.0214;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 143496570 . T TA 1570 PASS INDEL;BAVGPOST=0.949;BRSQ=0.652;LDAF=0.0795;AVGPOST=0.9448;RSQ=0.6844;ERATE=0.0086;THETA=0.0517;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 143496669 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.807;BRSQ=0.678;LDAF=0.3301;AVGPOST=0.8229;RSQ=0.7097;ERATE=0.0218;THETA=0.0065;AC=667;AN=2184 GT:DS:GL:BD 0.30540293 0 1 143496773 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.904;LDAF=0.0561;AVGPOST=0.9843;RSQ=0.8827;ERATE=0.0005;THETA=0.0059;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 143496829 . CCT C 1537 PASS INDEL;BAVGPOST=0.990;BRSQ=0.592;LDAF=0.0140;AVGPOST=0.9890;RSQ=0.6848;ERATE=0.0005;THETA=0.0085;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 143497031 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.765;LDAF=0.0101;AVGPOST=0.9939;RSQ=0.7579;ERATE=0.0008;THETA=0.0209;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 143497043 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.734;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6731;ERATE=0.0011;THETA=0.0130;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143497104 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.796;BRSQ=0.651;LDAF=0.3799;AVGPOST=0.8164;RSQ=0.6875;ERATE=0.0172;THETA=0.0112;AC=779;AN=2184 GT:DS:GL:BD 0.35668498 0 1 143497154 . AT A 332 PASS INDEL;BAVGPOST=0.998;BRSQ=0.880;LDAF=0.0093;AVGPOST=0.9929;RSQ=0.6607;ERATE=0.0006;THETA=0.0092;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 143497179 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.321;LDAF=0.0049;AVGPOST=0.9943;RSQ=0.5451;ERATE=0.0009;THETA=0.0206;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 143497291 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.384;LDAF=0.0223;AVGPOST=0.9665;RSQ=0.3952;ERATE=0.0042;THETA=0.0041;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 143497503 . CG C 10 PASS INDEL;BAVGPOST=0.995;BRSQ=0.386;LDAF=0.0044;AVGPOST=0.9953;RSQ=0.5259;ERATE=0.0007;THETA=0.0025;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143497520 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.935;BRSQ=0.490;LDAF=0.0665;AVGPOST=0.9329;RSQ=0.5524;ERATE=0.0089;THETA=0.0144;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 143497531 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.538;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.3478;ERATE=0.0008;THETA=0.0082;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143497564 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.925;LDAF=0.0535;AVGPOST=0.9925;RSQ=0.9426;ERATE=0.0005;THETA=0.0113;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 143497606 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.538;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6978;ERATE=0.0004;THETA=0.0205;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143497786 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.941;BRSQ=0.509;LDAF=0.0580;AVGPOST=0.9441;RSQ=0.5805;ERATE=0.0118;THETA=0.0043;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 143497852 . G GT 585 PASS INDEL;BAVGPOST=0.984;BRSQ=0.703;LDAF=0.0313;AVGPOST=0.9770;RSQ=0.6709;ERATE=0.0125;THETA=0.0123;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 143497854 . AG A 716 PASS INDEL;BAVGPOST=0.997;BRSQ=0.842;LDAF=0.0106;AVGPOST=0.9932;RSQ=0.7116;ERATE=0.0010;THETA=0.0197;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 143498642 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0284;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143499315 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.858;BRSQ=0.480;LDAF=0.2025;AVGPOST=0.8422;RSQ=0.5477;ERATE=0.0437;THETA=0.0063;AC=321;AN=2184 GT:DS:GL:BD 0.14697802 0 1 143499355 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.901;LDAF=0.0577;AVGPOST=0.9878;RSQ=0.9104;ERATE=0.0005;THETA=0.0290;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 143499463 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.652;LDAF=0.0179;AVGPOST=0.9845;RSQ=0.6162;ERATE=0.0011;THETA=0.0334;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 143500219 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.874;BRSQ=0.859;LDAF=0.6578;AVGPOST=0.9078;RSQ=0.8440;ERATE=0.0032;THETA=0.0174;AC=1453;AN=2184 GT:DS:GL:BD 0.66529304 1 1 143500235 . TGA T 306 PASS INDEL;BAVGPOST=0.998;BRSQ=0.696;LDAF=0.0025;AVGPOST=0.9969;RSQ=0.5078;ERATE=0.0006;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143500464 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.855;BRSQ=0.854;LDAF=0.5211;AVGPOST=0.8766;RSQ=0.8549;ERATE=0.0014;THETA=0.0053;AC=1174;AN=2184 GT:DS:GL:BD 0.53754580 1 1 143500475 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.870;BRSQ=0.696;LDAF=0.2355;AVGPOST=0.8785;RSQ=0.7329;ERATE=0.0070;THETA=0.0078;AC=477;AN=2184 GT:DS:GL:BD 0.21840659 0 1 143500496 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.708;LDAF=0.0164;AVGPOST=0.9868;RSQ=0.6558;ERATE=0.0017;THETA=0.0029;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 143500620 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.751;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4380;ERATE=0.0004;THETA=0.0105;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143500987 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.898;BRSQ=0.305;LDAF=0.0918;AVGPOST=0.8824;RSQ=0.4502;ERATE=0.0102;THETA=0.0065;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 143501123 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.765;LDAF=0.0028;AVGPOST=0.9994;RSQ=0.8998;ERATE=0.0004;THETA=0.0052;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 143501422 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.734;LDAF=0.0476;AVGPOST=0.9759;RSQ=0.7997;ERATE=0.0019;THETA=0.0081;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 143501554 . T TC 277 PASS INDEL;BAVGPOST=0.873;BRSQ=0.197;LDAF=0.1031;AVGPOST=0.8559;RSQ=0.4247;ERATE=0.0026;THETA=0.0036;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 143501562 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.907;BRSQ=0.354;LDAF=0.0820;AVGPOST=0.8987;RSQ=0.4624;ERATE=0.0098;THETA=0.0067;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 143501841 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.470;LDAF=0.0036;AVGPOST=0.9940;RSQ=0.3129;ERATE=0.0011;THETA=0.0035;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143501854 . CT C 2861 PASS INDEL;BAVGPOST=0.843;BRSQ=0.448;LDAF=0.1697;AVGPOST=0.8228;RSQ=0.4711;ERATE=0.0170;THETA=0.0050;AC=210;AN=2184 GT:DS:GL:BD 0.09615385 0 1 143501951 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.799;LDAF=0.0042;AVGPOST=0.9966;RSQ=0.6432;ERATE=0.0008;THETA=0.0018;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 143502380 . CA C 1134 PASS INDEL;BAVGPOST=0.938;BRSQ=0.562;LDAF=0.0949;AVGPOST=0.9126;RSQ=0.5663;ERATE=0.0249;THETA=0.0112;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 143502964 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.534;LDAF=0.0020;AVGPOST=0.9968;RSQ=0.2816;ERATE=0.0007;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143503029 rs75328513 A ATT 14101 PASS INDEL;BAVGPOST=0.798;BRSQ=0.541;LDAF=0.4491;AVGPOST=0.8212;RSQ=0.6269;ERATE=0.0227;THETA=0.0041;AC=947;AN=2184 GT:DS:GL:BD 0.43360806 0 1 143503447 . A AT 585 PASS INDEL;BAVGPOST=0.995;BRSQ=0.705;LDAF=0.0064;AVGPOST=0.9966;RSQ=0.7718;ERATE=0.0010;THETA=0.0173;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 143503749 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.925;BRSQ=0.857;LDAF=0.1984;AVGPOST=0.9314;RSQ=0.8412;ERATE=0.0011;THETA=0.0074;AC=398;AN=2184 GT:DS:GL:BD 0.18223444 0 1 143503761 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.853;LDAF=0.0696;AVGPOST=0.9831;RSQ=0.8951;ERATE=0.0029;THETA=0.0007;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 143503813 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.3450;ERATE=0.0008;THETA=0.0093;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143504090 . AT A 236 PASS INDEL;BAVGPOST=0.988;BRSQ=0.441;LDAF=0.0236;AVGPOST=0.9634;RSQ=0.3381;ERATE=0.0036;THETA=0.0055;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 143504118 rs75663247 T TG 472 PASS INDEL;BAVGPOST=0.940;BRSQ=0.477;LDAF=0.0819;AVGPOST=0.9043;RSQ=0.4723;ERATE=0.0064;THETA=0.0133;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 143504644 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.855;BRSQ=0.837;LDAF=0.5723;AVGPOST=0.8761;RSQ=0.8415;ERATE=0.0024;THETA=0.0066;AC=1262;AN=2184 GT:DS:GL:BD 0.57783884 1 1 143504864 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.894;BRSQ=0.564;LDAF=0.1709;AVGPOST=0.8807;RSQ=0.6227;ERATE=0.0366;THETA=0.0154;AC=270;AN=2184 GT:DS:GL:BD 0.12362637 0 1 143505065 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.950;BRSQ=0.743;LDAF=0.1211;AVGPOST=0.9353;RSQ=0.7445;ERATE=0.0125;THETA=0.0062;AC=219;AN=2184 GT:DS:GL:BD 0.10027473 0 1 143505081 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.3586;ERATE=0.0007;THETA=0.0043;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143505083 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5367;ERATE=0.0004;THETA=0.0099;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143505095 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4595;ERATE=0.0006;THETA=0.0202;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143505209 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.887;BRSQ=0.690;LDAF=0.2439;AVGPOST=0.8951;RSQ=0.7451;ERATE=0.0025;THETA=0.0074;AC=474;AN=2184 GT:DS:GL:BD 0.21703297 0 1 143505242 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.875;BRSQ=0.848;LDAF=0.6470;AVGPOST=0.9056;RSQ=0.8516;ERATE=0.0022;THETA=0.0089;AC=1429;AN=2184 GT:DS:GL:BD 0.65430403 1 1 143505245 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0004;THETA=0.0123;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143505248 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.706;LDAF=0.0147;AVGPOST=0.9887;RSQ=0.6782;ERATE=0.0022;THETA=0.0076;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 143505268 . CT C 1684 PASS INDEL;BAVGPOST=0.986;BRSQ=0.760;LDAF=0.0239;AVGPOST=0.9872;RSQ=0.7918;ERATE=0.0011;THETA=0.0074;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 143505323 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.693;LDAF=0.0084;AVGPOST=0.9935;RSQ=0.6842;ERATE=0.0005;THETA=0.0085;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 143505366 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.633;LDAF=0.0028;AVGPOST=0.9965;RSQ=0.4712;ERATE=0.0015;THETA=0.0031;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143505402 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.759;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.4939;ERATE=0.0007;THETA=0.0053;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143505411 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5922;ERATE=0.0005;THETA=0.0088;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143505419 . GC G 392 PASS INDEL;BAVGPOST=0.997;BRSQ=0.661;LDAF=0.0049;AVGPOST=0.9954;RSQ=0.5747;ERATE=0.0014;THETA=0.0026;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 143505628 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0011;AVGPOST=0.9984;RSQ=0.3273;ERATE=0.0006;THETA=0.0048;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143505723 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.842;BRSQ=0.589;LDAF=0.2573;AVGPOST=0.8373;RSQ=0.6471;ERATE=0.0226;THETA=0.0106;AC=485;AN=2184 GT:DS:GL:BD 0.22206959 0 1 143505964 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.600;LDAF=0.0162;AVGPOST=0.9853;RSQ=0.6309;ERATE=0.0010;THETA=0.0091;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 143506086 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.732;LDAF=0.0047;AVGPOST=0.9956;RSQ=0.6075;ERATE=0.0013;THETA=0.0060;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 143506089 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.957;LDAF=0.0584;AVGPOST=0.9912;RSQ=0.9391;ERATE=0.0004;THETA=0.0112;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 143506104 . GT G 8721 PASS INDEL;BAVGPOST=0.992;BRSQ=0.948;LDAF=0.0639;AVGPOST=0.9889;RSQ=0.9289;ERATE=0.0006;THETA=0.0023;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 143506115 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.472;LDAF=0.0045;AVGPOST=0.9946;RSQ=0.5190;ERATE=0.0008;THETA=0.0064;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 143506376 . CT C 330 PASS INDEL;BAVGPOST=0.954;BRSQ=0.418;LDAF=0.0638;AVGPOST=0.9138;RSQ=0.3924;ERATE=0.0103;THETA=0.0052;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 143507998 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.628;LDAF=0.0022;AVGPOST=0.9980;RSQ=0.6228;ERATE=0.0017;THETA=0.0060;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143508050 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.876;LDAF=0.0640;AVGPOST=0.9847;RSQ=0.8997;ERATE=0.0031;THETA=0.0045;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 143508069 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.716;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6380;ERATE=0.0006;THETA=0.0087;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143508073 . C CA 24 PASS INDEL;BAVGPOST=0.984;BRSQ=0.151;LDAF=0.0237;AVGPOST=0.9557;RSQ=0.2268;ERATE=0.0024;THETA=0.0114;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 143508530 rs67673979 GTA G 4986 PASS INDEL;BAVGPOST=0.869;BRSQ=0.703;LDAF=0.2896;AVGPOST=0.8713;RSQ=0.7481;ERATE=0.0021;THETA=0.0077;AC=580;AN=2184 GT:DS:GL:BD 0.26556778 0 1 143508534 rs75454158 AT A 19422 PASS INDEL;BAVGPOST=0.867;BRSQ=0.706;LDAF=0.3030;AVGPOST=0.8722;RSQ=0.7525;ERATE=0.0025;THETA=0.0183;AC=601;AN=2184 GT:DS:GL:BD 0.27518314 0 1 143508578 . CT C 171 PASS INDEL;BAVGPOST=0.998;BRSQ=0.579;LDAF=0.0022;AVGPOST=0.9982;RSQ=0.7254;ERATE=0.0004;THETA=0.0045;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143509092 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.904;BRSQ=0.796;LDAF=0.3519;AVGPOST=0.9128;RSQ=0.8191;ERATE=0.0014;THETA=0.0077;AC=738;AN=2184 GT:DS:GL:BD 0.33791208 0 1 143509160 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.895;LDAF=0.0952;AVGPOST=0.9746;RSQ=0.8971;ERATE=0.0012;THETA=0.0137;AC=195;AN=2184 GT:DS:GL:BD 0.08928572 0 1 143509170 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.861;BRSQ=0.547;LDAF=0.1770;AVGPOST=0.8629;RSQ=0.6407;ERATE=0.0153;THETA=0.0036;AC=333;AN=2184 GT:DS:GL:BD 0.15247253 0 1 143509363 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.906;BRSQ=0.791;LDAF=0.2942;AVGPOST=0.9171;RSQ=0.8181;ERATE=0.0160;THETA=0.0162;AC=617;AN=2184 GT:DS:GL:BD 0.28250915 0 1 143509364 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.757;LDAF=0.0094;AVGPOST=0.9932;RSQ=0.6979;ERATE=0.0007;THETA=0.0046;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 143511197 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.750;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4609;ERATE=0.0005;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143511514 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0027;AVGPOST=0.9990;RSQ=0.8526;ERATE=0.0004;THETA=0.0038;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 143511519 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.609;LDAF=0.0215;AVGPOST=0.9795;RSQ=0.6293;ERATE=0.0073;THETA=0.0139;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 143511645 . GGT G 1454 PASS INDEL;BAVGPOST=0.998;BRSQ=0.886;LDAF=0.0113;AVGPOST=0.9966;RSQ=0.8799;ERATE=0.0018;THETA=0.0053;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 143511671 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143512223 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.725;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5980;ERATE=0.0004;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143512249 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6141;ERATE=0.0004;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143512681 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.827;LDAF=0.0138;AVGPOST=0.9931;RSQ=0.7923;ERATE=0.0004;THETA=0.0109;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 143512729 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.937;BRSQ=0.495;LDAF=0.0631;AVGPOST=0.9335;RSQ=0.5409;ERATE=0.0093;THETA=0.0070;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 143512777 rs76883964 C CT 346 PASS INDEL;BAVGPOST=0.974;BRSQ=0.529;LDAF=0.0353;AVGPOST=0.9606;RSQ=0.5211;ERATE=0.0079;THETA=0.0098;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 143513133 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.921;BRSQ=0.829;LDAF=0.2045;AVGPOST=0.8886;RSQ=0.7371;ERATE=0.0014;THETA=0.0102;AC=380;AN=2184 GT:DS:GL:BD 0.17399268 0 1 143513537 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.959;BRSQ=0.457;LDAF=0.0322;AVGPOST=0.9712;RSQ=0.6229;ERATE=0.0039;THETA=0.0061;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 143513613 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5471;ERATE=0.0006;THETA=0.0033;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143514177 . CA C 121 PASS INDEL;BAVGPOST=0.995;BRSQ=0.157;LDAF=0.0753;AVGPOST=0.8613;RSQ=0.1596;ERATE=0.0028;THETA=0.0101;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 143514853 rs112599339 AG A 101 PASS INDEL;BAVGPOST=0.996;BRSQ=0.611;LDAF=0.0076;AVGPOST=0.9896;RSQ=0.4525;ERATE=0.0011;THETA=0.0076;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 143516123 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.777;LDAF=0.0059;AVGPOST=0.9955;RSQ=0.6621;ERATE=0.0029;THETA=0.0102;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 143516994 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.827;LDAF=0.0076;AVGPOST=0.9968;RSQ=0.8233;ERATE=0.0006;THETA=0.0061;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 143517337 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.879;BRSQ=0.717;LDAF=0.3429;AVGPOST=0.8792;RSQ=0.7655;ERATE=0.0210;THETA=0.0062;AC=705;AN=2184 GT:DS:GL:BD 0.32280219 0 1 143517582 . TC T 15 PASS INDEL;BAVGPOST=0.995;BRSQ=0.395;LDAF=0.0082;AVGPOST=0.9862;RSQ=0.2671;ERATE=0.0011;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143517708 . AC A 1220 PASS INDEL;BAVGPOST=0.919;BRSQ=0.454;LDAF=0.1119;AVGPOST=0.8702;RSQ=0.4218;ERATE=0.0187;THETA=0.0103;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 143517878 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.682;LDAF=0.0015;AVGPOST=0.9978;RSQ=0.3122;ERATE=0.0006;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143517905 . T TC 321 PASS INDEL;BAVGPOST=0.981;BRSQ=0.595;LDAF=0.0296;AVGPOST=0.9688;RSQ=0.5456;ERATE=0.0094;THETA=0.0036;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 143518606 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.871;BRSQ=0.801;LDAF=0.6566;AVGPOST=0.8958;RSQ=0.8134;ERATE=0.0014;THETA=0.0125;AC=1452;AN=2184 GT:DS:GL:BD 0.66483516 1 1 143518611 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0005;THETA=0.0065;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143519120 . GT G 35 PASS INDEL;BAVGPOST=0.991;BRSQ=0.389;LDAF=0.0136;AVGPOST=0.9780;RSQ=0.3145;ERATE=0.0022;THETA=0.0086;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 143520077 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.959;BRSQ=0.748;LDAF=0.0864;AVGPOST=0.9548;RSQ=0.7817;ERATE=0.0043;THETA=0.0154;AC=155;AN=2184 GT:DS:GL:BD 0.07097070 0 1 143520226 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.876;LDAF=0.0217;AVGPOST=0.9925;RSQ=0.8649;ERATE=0.0007;THETA=0.0144;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 143520455 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8005;ERATE=0.0005;THETA=0.0107;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143520810 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.877;BRSQ=0.718;LDAF=0.3702;AVGPOST=0.8912;RSQ=0.7503;ERATE=0.0146;THETA=0.0050;AC=769;AN=2184 GT:DS:GL:BD 0.35210621 0 1 143520860 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.877;BRSQ=0.667;LDAF=0.3229;AVGPOST=0.8819;RSQ=0.7116;ERATE=0.0104;THETA=0.0008;AC=674;AN=2184 GT:DS:GL:BD 0.30860806 0 1 143521106 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.807;LDAF=0.0033;AVGPOST=0.9986;RSQ=0.8011;ERATE=0.0007;THETA=0.0096;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 143521130 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.924;LDAF=0.0248;AVGPOST=0.9966;RSQ=0.9397;ERATE=0.0006;THETA=0.0180;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 143521218 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.886;BRSQ=0.715;LDAF=0.2558;AVGPOST=0.8802;RSQ=0.7283;ERATE=0.0043;THETA=0.0238;AC=490;AN=2184 GT:DS:GL:BD 0.22435898 0 1 143521225 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.943;BRSQ=0.511;LDAF=0.0677;AVGPOST=0.9440;RSQ=0.6501;ERATE=0.0023;THETA=0.0109;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 143521289 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.932;LDAF=0.0565;AVGPOST=0.9853;RSQ=0.8924;ERATE=0.0008;THETA=0.0043;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 143521410 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.837;BRSQ=0.510;LDAF=0.2025;AVGPOST=0.8254;RSQ=0.5456;ERATE=0.0157;THETA=0.0075;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 143522173 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.879;BRSQ=0.569;LDAF=0.1751;AVGPOST=0.8669;RSQ=0.6138;ERATE=0.0144;THETA=0.0116;AC=305;AN=2184 GT:DS:GL:BD 0.13965201 0 1 143522648 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.780;BRSQ=0.569;LDAF=0.3132;AVGPOST=0.8058;RSQ=0.6805;ERATE=0.0142;THETA=0.0064;AC=610;AN=2184 GT:DS:GL:BD 0.27930403 0 1 143522668 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.946;BRSQ=0.479;LDAF=0.0568;AVGPOST=0.9387;RSQ=0.5599;ERATE=0.0039;THETA=0.0034;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 143522843 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5854;ERATE=0.0005;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143523131 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.669;LDAF=0.0043;AVGPOST=0.9957;RSQ=0.5499;ERATE=0.0015;THETA=0.0065;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143523366 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.818;LDAF=0.0187;AVGPOST=0.9878;RSQ=0.7140;ERATE=0.0007;THETA=0.0093;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 143523518 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4325;ERATE=0.0004;THETA=0.0074;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143523566 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.751;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4360;ERATE=0.0004;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143524092 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.671;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.6812;ERATE=0.0004;THETA=0.0108;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143524154 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.530;LDAF=0.0101;AVGPOST=0.9830;RSQ=0.2587;ERATE=0.0026;THETA=0.0023;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143524174 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.936;BRSQ=0.337;LDAF=0.0616;AVGPOST=0.9482;RSQ=0.6800;ERATE=0.0022;THETA=0.0085;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 143524179 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.431;LDAF=0.0014;AVGPOST=0.9976;RSQ=0.2964;ERATE=0.0007;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143524247 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.560;LDAF=0.0252;AVGPOST=0.9721;RSQ=0.5193;ERATE=0.0023;THETA=0.0033;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 143524265 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.673;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3511;ERATE=0.0005;THETA=0.0039;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143524270 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.3766;ERATE=0.0005;THETA=0.0104;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143524379 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.424;LDAF=0.0149;AVGPOST=0.9767;RSQ=0.3495;ERATE=0.0011;THETA=0.0055;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 143524606 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.882;LDAF=0.0236;AVGPOST=0.9942;RSQ=0.8964;ERATE=0.0005;THETA=0.0085;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 143524615 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5174;ERATE=0.0005;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143524625 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.746;LDAF=0.0056;AVGPOST=0.9958;RSQ=0.6790;ERATE=0.0007;THETA=0.0114;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 143524988 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.745;LDAF=0.0472;AVGPOST=0.9732;RSQ=0.7483;ERATE=0.0020;THETA=0.0097;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 143524994 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.941;BRSQ=0.448;LDAF=0.0643;AVGPOST=0.9288;RSQ=0.4952;ERATE=0.0081;THETA=0.0083;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 143525667 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.773;LDAF=0.0591;AVGPOST=0.9761;RSQ=0.8302;ERATE=0.0049;THETA=0.0052;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 143525703 . TC T 103 PASS INDEL;BAVGPOST=0.997;BRSQ=0.452;LDAF=0.0046;AVGPOST=0.9935;RSQ=0.3385;ERATE=0.0011;THETA=0.0138;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143525874 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.781;BRSQ=0.580;LDAF=0.2843;AVGPOST=0.8016;RSQ=0.6386;ERATE=0.0193;THETA=0.0127;AC=526;AN=2184 GT:DS:GL:BD 0.24084249 0 1 143525979 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.862;BRSQ=0.659;LDAF=0.2785;AVGPOST=0.8564;RSQ=0.7091;ERATE=0.0171;THETA=0.0132;AC=560;AN=2184 GT:DS:GL:BD 0.25641027 0 1 143526034 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.420;LDAF=0.0137;AVGPOST=0.9835;RSQ=0.5248;ERATE=0.0031;THETA=0.0129;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 143526935 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.927;BRSQ=0.477;LDAF=0.0894;AVGPOST=0.9017;RSQ=0.5026;ERATE=0.0192;THETA=0.0059;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 143527688 . TA T 61 PASS INDEL;BAVGPOST=0.996;BRSQ=0.598;LDAF=0.0077;AVGPOST=0.9895;RSQ=0.3992;ERATE=0.0009;THETA=0.0131;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 143527888 . CT C 117 PASS INDEL;BAVGPOST=0.993;BRSQ=0.115;LDAF=0.0542;AVGPOST=0.8979;RSQ=0.1283;ERATE=0.0029;THETA=0.0042;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143527933 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.855;BRSQ=0.550;LDAF=0.2396;AVGPOST=0.8562;RSQ=0.6352;ERATE=0.0359;THETA=0.0205;AC=424;AN=2184 GT:DS:GL:BD 0.19413920 0 1 143528403 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.603;LDAF=0.0017;AVGPOST=0.9972;RSQ=0.2581;ERATE=0.0007;THETA=0.0071;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143528570 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.865;BRSQ=0.714;LDAF=0.3023;AVGPOST=0.8708;RSQ=0.7393;ERATE=0.0123;THETA=0.0143;AC=606;AN=2184 GT:DS:GL:BD 0.27747253 0 1 143528581 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.712;LDAF=0.0025;AVGPOST=0.9975;RSQ=0.5256;ERATE=0.0015;THETA=0.0027;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143528585 . CA C 733 PASS INDEL;BAVGPOST=0.980;BRSQ=0.548;LDAF=0.0258;AVGPOST=0.9747;RSQ=0.5807;ERATE=0.0059;THETA=0.0093;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 143528606 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.797;LDAF=0.0029;AVGPOST=0.9968;RSQ=0.4982;ERATE=0.0010;THETA=0.0151;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143529330 . A AG 10959 PASS INDEL;BAVGPOST=0.990;BRSQ=0.922;LDAF=0.0571;AVGPOST=0.9890;RSQ=0.9157;ERATE=0.0007;THETA=0.0187;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 143529442 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.891;BRSQ=0.498;LDAF=0.1389;AVGPOST=0.8792;RSQ=0.5975;ERATE=0.0163;THETA=0.0161;AC=218;AN=2184 GT:DS:GL:BD 0.09981685 0 1 143529516 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.857;BRSQ=0.606;LDAF=0.2699;AVGPOST=0.8632;RSQ=0.6684;ERATE=0.0360;THETA=0.0099;AC=504;AN=2184 GT:DS:GL:BD 0.23076923 0 1 143529588 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.498;LDAF=0.0379;AVGPOST=0.9574;RSQ=0.5559;ERATE=0.0042;THETA=0.0063;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 143529600 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.653;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5001;ERATE=0.0004;THETA=0.0069;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143529691 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.851;BRSQ=0.504;LDAF=0.1976;AVGPOST=0.8480;RSQ=0.5804;ERATE=0.0219;THETA=0.0056;AC=332;AN=2184 GT:DS:GL:BD 0.15201466 0 1 143529978 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.890;BRSQ=0.762;LDAF=0.3173;AVGPOST=0.8950;RSQ=0.7776;ERATE=0.0019;THETA=0.0159;AC=640;AN=2184 GT:DS:GL:BD 0.29304031 0 1 143530000 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.682;LDAF=0.0261;AVGPOST=0.9822;RSQ=0.7118;ERATE=0.0019;THETA=0.0035;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 143530004 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5771;ERATE=0.0004;THETA=0.0041;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143530007 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.551;LDAF=0.0224;AVGPOST=0.9777;RSQ=0.5834;ERATE=0.0015;THETA=0.0241;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 143530019 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.706;LDAF=0.0027;AVGPOST=0.9970;RSQ=0.5270;ERATE=0.0009;THETA=0.0074;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143530032 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.892;BRSQ=0.790;LDAF=0.3258;AVGPOST=0.9023;RSQ=0.8089;ERATE=0.0006;THETA=0.0014;AC=675;AN=2184 GT:DS:GL:BD 0.30906594 0 1 143530043 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.890;BRSQ=0.784;LDAF=0.3213;AVGPOST=0.9017;RSQ=0.8071;ERATE=0.0014;THETA=0.0161;AC=667;AN=2184 GT:DS:GL:BD 0.30540293 0 1 143530075 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.826;BRSQ=0.767;LDAF=0.5483;AVGPOST=0.8473;RSQ=0.7974;ERATE=0.0022;THETA=0.0069;AC=1192;AN=2184 GT:DS:GL:BD 0.54578757 1 1 143530246 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.911;LDAF=0.0487;AVGPOST=0.9859;RSQ=0.8830;ERATE=0.0006;THETA=0.0281;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 143530261 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.954;BRSQ=0.607;LDAF=0.0639;AVGPOST=0.9476;RSQ=0.6498;ERATE=0.0056;THETA=0.0100;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 143530308 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.858;BRSQ=0.560;LDAF=0.1993;AVGPOST=0.8618;RSQ=0.6567;ERATE=0.0124;THETA=0.0025;AC=374;AN=2184 GT:DS:GL:BD 0.17124543 0 1 143530483 . T TA 14617 PASS INDEL;BAVGPOST=0.854;BRSQ=0.686;LDAF=0.2979;AVGPOST=0.8691;RSQ=0.7304;ERATE=0.0079;THETA=0.0195;AC=595;AN=2184 GT:DS:GL:BD 0.27243590 0 1 143530835 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.812;BRSQ=0.752;LDAF=0.5321;AVGPOST=0.8335;RSQ=0.7743;ERATE=0.0072;THETA=0.0067;AC=1174;AN=2184 GT:DS:GL:BD 0.53754580 1 1 143531035 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.841;BRSQ=0.581;LDAF=0.2315;AVGPOST=0.8455;RSQ=0.6705;ERATE=0.0196;THETA=0.0215;AC=438;AN=2184 GT:DS:GL:BD 0.20054945 0 1 143531835 . GA G 156 PASS INDEL;BAVGPOST=0.945;BRSQ=0.147;LDAF=0.0894;AVGPOST=0.8457;RSQ=0.1973;ERATE=0.0095;THETA=0.0065;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 143531971 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.908;BRSQ=0.821;LDAF=0.2211;AVGPOST=0.9152;RSQ=0.8315;ERATE=0.0049;THETA=0.0088;AC=436;AN=2184 GT:DS:GL:BD 0.19963370 0 1 143531999 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.881;BRSQ=0.649;LDAF=0.2016;AVGPOST=0.8920;RSQ=0.7119;ERATE=0.0185;THETA=0.0137;AC=385;AN=2184 GT:DS:GL:BD 0.17628205 0 1 143532819 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.932;BRSQ=0.823;LDAF=0.1559;AVGPOST=0.9543;RSQ=0.8659;ERATE=0.0006;THETA=0.0116;AC=321;AN=2184 GT:DS:GL:BD 0.14697802 0 1 143533188 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.569;LDAF=0.0158;AVGPOST=0.9878;RSQ=0.6640;ERATE=0.0041;THETA=0.0099;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 143536178 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.571;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.3966;ERATE=0.0005;THETA=0.0147;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143536307 . GGA G 1607 PASS INDEL;BAVGPOST=0.931;BRSQ=0.538;LDAF=0.0936;AVGPOST=0.9169;RSQ=0.5750;ERATE=0.0204;THETA=0.0157;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 143537228 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.854;BRSQ=0.703;LDAF=0.2307;AVGPOST=0.8723;RSQ=0.7734;ERATE=0.0083;THETA=0.0074;AC=431;AN=2184 GT:DS:GL:BD 0.19734432 0 1 143537234 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.502;LDAF=0.0281;AVGPOST=0.9660;RSQ=0.4857;ERATE=0.0033;THETA=0.0131;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 143537253 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.612;LDAF=0.0030;AVGPOST=0.9964;RSQ=0.4754;ERATE=0.0013;THETA=0.0056;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143537268 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.612;LDAF=0.0280;AVGPOST=0.9745;RSQ=0.6251;ERATE=0.0048;THETA=0.0101;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 143538594 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.806;BRSQ=0.625;LDAF=0.2848;AVGPOST=0.8187;RSQ=0.6695;ERATE=0.0265;THETA=0.0050;AC=550;AN=2184 GT:DS:GL:BD 0.25183150 0 1 143541240 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.818;BRSQ=0.701;LDAF=0.5288;AVGPOST=0.8500;RSQ=0.7225;ERATE=0.0080;THETA=0.0046;AC=1160;AN=2184 GT:DS:GL:BD 0.53113556 1 1 143541253 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.929;BRSQ=0.861;LDAF=0.2319;AVGPOST=0.9351;RSQ=0.8356;ERATE=0.0025;THETA=0.0144;AC=479;AN=2184 GT:DS:GL:BD 0.21932234 0 1 143541738 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.814;BRSQ=0.555;LDAF=0.3314;AVGPOST=0.8373;RSQ=0.6594;ERATE=0.0215;THETA=0.0161;AC=661;AN=2184 GT:DS:GL:BD 0.30265567 0 1 143541790 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.798;BRSQ=0.750;LDAF=0.4978;AVGPOST=0.8296;RSQ=0.7859;ERATE=0.0025;THETA=0.0134;AC=1094;AN=2184 GT:DS:GL:BD 0.50091577 1 1 143541793 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.814;BRSQ=0.521;LDAF=0.2173;AVGPOST=0.8434;RSQ=0.6368;ERATE=0.0077;THETA=0.0447;AC=403;AN=2184 GT:DS:GL:BD 0.18452381 0 1 143541912 . A AT 53 PASS INDEL;BAVGPOST=0.977;BRSQ=0.651;LDAF=0.0269;AVGPOST=0.9775;RSQ=0.6743;ERATE=0.0004;THETA=0.0166;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 143541915 rs78578726 T TA 1460 PASS INDEL;BAVGPOST=0.981;BRSQ=0.765;LDAF=0.0483;AVGPOST=0.9747;RSQ=0.7592;ERATE=0.0073;THETA=0.0067;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 143542011 . AC A 6211 PASS INDEL;BAVGPOST=0.976;BRSQ=0.842;LDAF=0.0529;AVGPOST=0.9784;RSQ=0.8312;ERATE=0.0007;THETA=0.0346;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 143542170 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.723;LDAF=0.0184;AVGPOST=0.9874;RSQ=0.6931;ERATE=0.0017;THETA=0.0203;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 143542397 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.860;BRSQ=0.610;LDAF=0.2353;AVGPOST=0.8737;RSQ=0.6870;ERATE=0.0089;THETA=0.0054;AC=440;AN=2184 GT:DS:GL:BD 0.20146520 0 1 143542478 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.810;BRSQ=0.499;LDAF=0.2998;AVGPOST=0.8236;RSQ=0.5909;ERATE=0.0174;THETA=0.0189;AC=569;AN=2184 GT:DS:GL:BD 0.26053113 0 1 143542490 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.854;BRSQ=0.562;LDAF=0.2003;AVGPOST=0.8685;RSQ=0.6476;ERATE=0.0056;THETA=0.0190;AC=369;AN=2184 GT:DS:GL:BD 0.16895604 0 1 143542499 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.919;BRSQ=0.626;LDAF=0.1024;AVGPOST=0.9419;RSQ=0.7580;ERATE=0.0035;THETA=0.0103;AC=182;AN=2184 GT:DS:GL:BD 0.08333334 0 1 143542565 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.566;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.3332;ERATE=0.0006;THETA=0.0128;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143542577 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.802;BRSQ=0.688;LDAF=0.5278;AVGPOST=0.7938;RSQ=0.6837;ERATE=0.0053;THETA=0.0271;AC=1155;AN=2184 GT:DS:GL:BD 0.52884614 1 1 143542598 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.538;LDAF=0.0052;AVGPOST=0.9950;RSQ=0.5586;ERATE=0.0012;THETA=0.0217;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 143542619 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.647;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4592;ERATE=0.0005;THETA=0.0364;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143542688 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.771;BRSQ=0.478;LDAF=0.3484;AVGPOST=0.7930;RSQ=0.5548;ERATE=0.0035;THETA=0.0192;AC=641;AN=2184 GT:DS:GL:BD 0.29349816 0 1 143542700 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.846;BRSQ=0.563;LDAF=0.2246;AVGPOST=0.8443;RSQ=0.6137;ERATE=0.0023;THETA=0.0236;AC=402;AN=2184 GT:DS:GL:BD 0.18406594 0 1 143542707 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.949;BRSQ=0.618;LDAF=0.0568;AVGPOST=0.9531;RSQ=0.6346;ERATE=0.0023;THETA=0.0477;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 143542772 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.825;BRSQ=0.457;LDAF=0.1764;AVGPOST=0.8445;RSQ=0.5342;ERATE=0.0017;THETA=0.0564;AC=268;AN=2184 GT:DS:GL:BD 0.12271062 0 1 143542816 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.855;BRSQ=0.413;LDAF=0.1508;AVGPOST=0.8516;RSQ=0.4865;ERATE=0.0114;THETA=0.0193;AC=203;AN=2184 GT:DS:GL:BD 0.09294872 0 1 143542826 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.900;BRSQ=0.447;LDAF=0.0965;AVGPOST=0.9000;RSQ=0.5171;ERATE=0.0032;THETA=0.0354;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 143542943 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.300;LDAF=0.0260;AVGPOST=0.9583;RSQ=0.2605;ERATE=0.0019;THETA=0.0200;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 143542965 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.899;BRSQ=0.401;LDAF=0.0968;AVGPOST=0.8915;RSQ=0.4555;ERATE=0.0011;THETA=0.0247;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 143542967 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.847;BRSQ=0.291;LDAF=0.1459;AVGPOST=0.8136;RSQ=0.3423;ERATE=0.0164;THETA=0.0150;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 143542972 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.894;BRSQ=0.402;LDAF=0.1101;AVGPOST=0.8764;RSQ=0.4364;ERATE=0.0037;THETA=0.0201;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 143543006 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.793;BRSQ=0.289;LDAF=0.1628;AVGPOST=0.8025;RSQ=0.3720;ERATE=0.0060;THETA=0.0271;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 143543016 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.806;BRSQ=0.329;LDAF=0.1299;AVGPOST=0.8483;RSQ=0.4255;ERATE=0.0018;THETA=0.0218;AC=131;AN=2184 GT:DS:GL:BD 0.05998169 0 1 143543033 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.808;BRSQ=0.523;LDAF=0.2725;AVGPOST=0.8018;RSQ=0.5717;ERATE=0.0091;THETA=0.0254;AC=424;AN=2184 GT:DS:GL:BD 0.19413920 0 1 143543064 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.472;LDAF=0.0169;AVGPOST=0.9856;RSQ=0.6128;ERATE=0.0017;THETA=0.0264;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 143543065 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.717;BRSQ=0.325;LDAF=0.3178;AVGPOST=0.7517;RSQ=0.4673;ERATE=0.0027;THETA=0.0529;AC=472;AN=2184 GT:DS:GL:BD 0.21611722 0 1 143543068 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.321;LDAF=0.0040;AVGPOST=0.9931;RSQ=0.2000;ERATE=0.0013;THETA=0.0303;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143645275 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.510;LDAF=0.0090;AVGPOST=0.9886;RSQ=0.4200;ERATE=0.0013;THETA=0.0223;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 143654911 . C CT 354 PASS INDEL;BAVGPOST=0.479;BRSQ=0.031;LDAF=0.7218;AVGPOST=0.5831;RSQ=0.1062;ERATE=0.0167;THETA=0.0429;AC=2030;AN=2184 GT:DS:GL:BD 0.92948717 1 1 143658876 . C CA 6 PASS INDEL;BAVGPOST=0.648;BRSQ=0.002;LDAF=0.1082;AVGPOST=0.7993;RSQ=0.0720;ERATE=0.0085;THETA=0.0244;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143658885 . A ATT 13 PASS INDEL;BAVGPOST=0.684;BRSQ=0.002;LDAF=0.1236;AVGPOST=0.7731;RSQ=0.0693;ERATE=0.0042;THETA=0.0353;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143661166 . A AAG 37 PASS INDEL;BAVGPOST=0.248;BRSQ=0.001;LDAF=0.7311;AVGPOST=0.5755;RSQ=0.0589;ERATE=0.0185;THETA=0.0320;AC=2114;AN=2184 GT:DS:GL:BD 0.96794873 1 1 143661168 . G GA 59 PASS INDEL;BAVGPOST=0.499;BRSQ=0;LDAF=0.9008;AVGPOST=0.8139;RSQ=0.0639;ERATE=0.0099;THETA=0.0338;AC=2181;AN=2184 GT:DS:GL:BD 0.99862635 1 1 143661243 . GA G 12 PASS INDEL;BAVGPOST=0.318;BRSQ=0.001;LDAF=0.9340;AVGPOST=0.8739;RSQ=0.0794;ERATE=0.0053;THETA=0.0309;AC=2183;AN=2184 GT:DS:GL:BD 0.99954212 1 1 143662665 . T TA 392 PASS INDEL;BAVGPOST=0.963;BRSQ=0.481;LDAF=0.0431;AVGPOST=0.9534;RSQ=0.4886;ERATE=0.0059;THETA=0.0460;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 143663529 . G GA 305 PASS INDEL;BAVGPOST=0.426;BRSQ=0.026;LDAF=0.3078;AVGPOST=0.5610;RSQ=0.1007;ERATE=0.0208;THETA=0.0047;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 143663645 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.956;BRSQ=0.555;LDAF=0.0463;AVGPOST=0.9619;RSQ=0.6669;ERATE=0.0018;THETA=0.0090;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 143663665 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.368;LDAF=0.0258;AVGPOST=0.9702;RSQ=0.4999;ERATE=0.0016;THETA=0.0314;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 143663769 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6188;ERATE=0.0004;THETA=0.0218;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143663776 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0028;AVGPOST=0.9988;RSQ=0.8332;ERATE=0.0004;THETA=0.0066;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143663882 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.911;BRSQ=0.355;LDAF=0.0846;AVGPOST=0.9000;RSQ=0.4540;ERATE=0.0104;THETA=0.0258;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 143664074 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.830;BRSQ=0.596;LDAF=0.3335;AVGPOST=0.8455;RSQ=0.7031;ERATE=0.0010;THETA=0.0045;AC=651;AN=2184 GT:DS:GL:BD 0.29807693 0 1 143664091 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.831;BRSQ=0.597;LDAF=0.3323;AVGPOST=0.8471;RSQ=0.7063;ERATE=0.0010;THETA=0.0227;AC=658;AN=2184 GT:DS:GL:BD 0.30128205 0 1 143664135 rs78827372 C CACG 2312 PASS INDEL;BAVGPOST=0.935;BRSQ=0.541;LDAF=0.0897;AVGPOST=0.9180;RSQ=0.5558;ERATE=0.0163;THETA=0.0063;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 143664183 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.710;BRSQ=0.362;LDAF=0.3637;AVGPOST=0.7335;RSQ=0.4799;ERATE=0.0122;THETA=0.0279;AC=657;AN=2184 GT:DS:GL:BD 0.30082417 0 1 143664390 . G GA 101 PASS INDEL;BAVGPOST=0.978;BRSQ=0.338;LDAF=0.0251;AVGPOST=0.9635;RSQ=0.3447;ERATE=0.0017;THETA=0.0216;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 143664451 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.826;BRSQ=0.275;LDAF=0.1270;AVGPOST=0.8406;RSQ=0.3841;ERATE=0.0046;THETA=0.0183;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 143664458 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.654;BRSQ=0.294;LDAF=0.3289;AVGPOST=0.6808;RSQ=0.4215;ERATE=0.0125;THETA=0.0156;AC=449;AN=2184 GT:DS:GL:BD 0.20558608 0 1 143664590 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.402;LDAF=0.0106;AVGPOST=0.9856;RSQ=0.4324;ERATE=0.0010;THETA=0.0333;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 143664657 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.743;BRSQ=0.268;LDAF=0.2114;AVGPOST=0.7626;RSQ=0.3866;ERATE=0.0045;THETA=0.0165;AC=235;AN=2184 GT:DS:GL:BD 0.10760073 0 1 143664677 . A ATCT 69 PASS INDEL;BAVGPOST=0.982;BRSQ=0.254;LDAF=0.0287;AVGPOST=0.9499;RSQ=0.2035;ERATE=0.0053;THETA=0.0186;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 143664698 . TGTTGTTGTTG T 2771 PASS INDEL;BAVGPOST=0.931;BRSQ=0.409;LDAF=0.0550;AVGPOST=0.9427;RSQ=0.5294;ERATE=0.0037;THETA=0.0310;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 143664941 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.548;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.3224;ERATE=0.0008;THETA=0.0295;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143665041 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.430;LDAF=0.0131;AVGPOST=0.9835;RSQ=0.4758;ERATE=0.0014;THETA=0.0197;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 143666534 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.567;LDAF=0.0023;AVGPOST=0.9964;RSQ=0.2537;ERATE=0.0009;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143666540 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.959;BRSQ=0.537;LDAF=0.0444;AVGPOST=0.9573;RSQ=0.5753;ERATE=0.0053;THETA=0.0160;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 143666540 . T TAC 558 PASS INDEL;BAVGPOST=0.963;BRSQ=0.461;LDAF=0.0329;AVGPOST=0.9628;RSQ=0.5046;ERATE=0.0028;THETA=0.0274;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 143666544 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.545;LDAF=0.0231;AVGPOST=0.9765;RSQ=0.5650;ERATE=0.0016;THETA=0.0262;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 143666568 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.546;LDAF=0.0028;AVGPOST=0.9968;RSQ=0.5320;ERATE=0.0004;THETA=0.0088;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143667491 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.882;BRSQ=0.592;LDAF=0.1742;AVGPOST=0.8902;RSQ=0.6896;ERATE=0.0008;THETA=0.0085;AC=280;AN=2184 GT:DS:GL:BD 0.12820514 0 1 143667505 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.888;BRSQ=0.605;LDAF=0.1672;AVGPOST=0.9012;RSQ=0.7174;ERATE=0.0009;THETA=0.0041;AC=277;AN=2184 GT:DS:GL:BD 0.12683150 0 1 143667508 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.888;BRSQ=0.607;LDAF=0.1669;AVGPOST=0.9018;RSQ=0.7197;ERATE=0.0007;THETA=0.0137;AC=277;AN=2184 GT:DS:GL:BD 0.12683150 0 1 143667527 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.885;BRSQ=0.590;LDAF=0.1641;AVGPOST=0.9013;RSQ=0.7112;ERATE=0.0019;THETA=0.0104;AC=276;AN=2184 GT:DS:GL:BD 0.12637363 0 1 143667844 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.863;BRSQ=0.409;LDAF=0.1332;AVGPOST=0.8655;RSQ=0.4981;ERATE=0.0065;THETA=0.0329;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 143670654 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.697;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5261;ERATE=0.0004;THETA=0.0275;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143670851 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.610;LDAF=0.0185;AVGPOST=0.9865;RSQ=0.6651;ERATE=0.0008;THETA=0.0287;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 143671698 . G GT 302 PASS INDEL;BAVGPOST=0.981;BRSQ=0.449;LDAF=0.0314;AVGPOST=0.9563;RSQ=0.3640;ERATE=0.0072;THETA=0.0188;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 143671708 . G GTTGTT 460 PASS INDEL;BAVGPOST=0.989;BRSQ=0.355;LDAF=0.0096;AVGPOST=0.9887;RSQ=0.4774;ERATE=0.0009;THETA=0.0112;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 143671816 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.516;LDAF=0.0214;AVGPOST=0.9775;RSQ=0.5539;ERATE=0.0019;THETA=0.0136;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 143671894 . C CT 360 PASS INDEL;BAVGPOST=0.426;BRSQ=0.066;LDAF=0.3441;AVGPOST=0.5811;RSQ=0.1916;ERATE=0.0119;THETA=0.0352;AC=347;AN=2184 GT:DS:GL:BD 0.15888278 0 1 143680299 . AT A 155 PASS INDEL;BAVGPOST=0.526;BRSQ=0.028;LDAF=0.2010;AVGPOST=0.6726;RSQ=0.1291;ERATE=0.0113;THETA=0.0266;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 143682766 . A ATATT 1351 PASS INDEL;BAVGPOST=0.597;BRSQ=0.032;LDAF=0.2229;AVGPOST=0.6442;RSQ=0.1247;ERATE=0.0131;THETA=0.0087;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 143689667 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.947;BRSQ=0.338;LDAF=0.0368;AVGPOST=0.9554;RSQ=0.4728;ERATE=0.0023;THETA=0.0164;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 143721945 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.057;LDAF=0.0416;AVGPOST=0.9211;RSQ=0.1448;ERATE=0.0028;THETA=0.0113;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143723117 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.632;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5492;ERATE=0.0004;THETA=0.0068;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143725579 . C CT 189 PASS INDEL;BAVGPOST=0.942;BRSQ=0.399;LDAF=0.0646;AVGPOST=0.9166;RSQ=0.4085;ERATE=0.0112;THETA=0.0243;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 143727708 . G GA 870 PASS INDEL;BAVGPOST=0.930;BRSQ=0.234;LDAF=0.0612;AVGPOST=0.9081;RSQ=0.2879;ERATE=0.0051;THETA=0.0302;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 143729960 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.558;LDAF=0.0084;AVGPOST=0.9925;RSQ=0.6075;ERATE=0.0010;THETA=0.0231;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 143732489 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5270;ERATE=0.0004;THETA=0.0343;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143732839 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.638;LDAF=0.0084;AVGPOST=0.9934;RSQ=0.6499;ERATE=0.0008;THETA=0.0044;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 143732861 . CTA C 184 PASS INDEL;BAVGPOST=0.997;BRSQ=0.640;LDAF=0.0067;AVGPOST=0.9921;RSQ=0.4625;ERATE=0.0018;THETA=0.0050;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 143733467 . C CG 479 PASS INDEL;BAVGPOST=0.988;BRSQ=0.439;LDAF=0.0146;AVGPOST=0.9818;RSQ=0.4518;ERATE=0.0051;THETA=0.0110;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 143733921 . C CAA 415 PASS INDEL;BAVGPOST=0.431;BRSQ=0.025;LDAF=0.2359;AVGPOST=0.6388;RSQ=0.1580;ERATE=0.0112;THETA=0.0157;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 143734242 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.928;BRSQ=0.854;LDAF=0.3048;AVGPOST=0.8917;RSQ=0.8261;ERATE=0.0004;THETA=0.0121;AC=644;AN=2184 GT:DS:GL:BD 0.29487181 0 1 143740298 . TG T 130 PASS INDEL;BAVGPOST=0.999;BRSQ=0.463;LDAF=0.0042;AVGPOST=0.9925;RSQ=0.1834;ERATE=0.0008;THETA=0.0041;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143743774 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.857;BRSQ=0.328;LDAF=0.1234;AVGPOST=0.8554;RSQ=0.4267;ERATE=0.0040;THETA=0.0013;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 143743783 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.837;BRSQ=0.358;LDAF=0.1760;AVGPOST=0.8052;RSQ=0.4222;ERATE=0.0089;THETA=0.0109;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 143744064 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.434;LDAF=0.0157;AVGPOST=0.9804;RSQ=0.4413;ERATE=0.0014;THETA=0.0028;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 143744411 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.729;BRSQ=0.328;LDAF=0.4043;AVGPOST=0.7773;RSQ=0.4961;ERATE=0.0161;THETA=0.0085;AC=774;AN=2184 GT:DS:GL:BD 0.35439560 0 1 143745163 . AC A 55 PASS INDEL;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6496;ERATE=0.0004;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143746594 . AG A 911 PASS INDEL;BAVGPOST=0.990;BRSQ=0.629;LDAF=0.0143;AVGPOST=0.9885;RSQ=0.6411;ERATE=0.0011;THETA=0.0031;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 143746616 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.561;LDAF=0.0325;AVGPOST=0.9705;RSQ=0.5947;ERATE=0.0011;THETA=0.0095;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 143746881 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.943;BRSQ=0.888;LDAF=0.3192;AVGPOST=0.9291;RSQ=0.8875;ERATE=0.0012;THETA=0.0048;AC=681;AN=2184 GT:DS:GL:BD 0.31181318 0 1 143747335 . TA T 1827 PASS INDEL;BAVGPOST=0.987;BRSQ=0.667;LDAF=0.0184;AVGPOST=0.9905;RSQ=0.8021;ERATE=0.0006;THETA=0.0135;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 143747460 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4553;ERATE=0.0005;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143748380 . AC A 175 PASS INDEL;BAVGPOST=0.998;BRSQ=0.659;LDAF=0.0028;AVGPOST=0.9978;RSQ=0.6375;ERATE=0.0015;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143748520 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0038;AVGPOST=0.9987;RSQ=0.8674;ERATE=0.0004;THETA=0.0048;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 143748638 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.773;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6061;ERATE=0.0005;THETA=0.0078;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143748661 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7817;ERATE=0.0004;THETA=0.0048;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143750150 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.635;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5596;ERATE=0.0007;THETA=0.0089;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143750176 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.536;LDAF=0.0398;AVGPOST=0.9729;RSQ=0.7149;ERATE=0.0015;THETA=0.0055;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 143750262 . CA C 119 PASS INDEL;BAVGPOST=0.602;BRSQ=0.040;LDAF=0.2896;AVGPOST=0.5847;RSQ=0.1407;ERATE=0.0205;THETA=0.0161;AC=182;AN=2184 GT:DS:GL:BD 0.08333334 0 1 143751131 . T TA 200 PASS INDEL;BAVGPOST=0.991;BRSQ=0.170;LDAF=0.0933;AVGPOST=0.8273;RSQ=0.1243;ERATE=0.0063;THETA=0.0081;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143751357 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4989;ERATE=0.0005;THETA=0.0069;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143751452 . TG T 98 PASS INDEL;BAVGPOST=0.978;BRSQ=0.038;LDAF=0.1223;AVGPOST=0.7873;RSQ=0.1641;ERATE=0.0097;THETA=0.0037;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 143752170 . TTCTG T 296 PASS INDEL;BAVGPOST=0.988;BRSQ=0.555;LDAF=0.0231;AVGPOST=0.9724;RSQ=0.5445;ERATE=0.0008;THETA=0.0035;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 143752611 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.899;BRSQ=0.496;LDAF=0.1154;AVGPOST=0.8941;RSQ=0.5706;ERATE=0.0019;THETA=0.0084;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 143753176 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0009;AVGPOST=0.9987;RSQ=0.3439;ERATE=0.0006;THETA=0.0094;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143753520 . AT A 421 PASS INDEL;BAVGPOST=0.995;BRSQ=0.627;LDAF=0.0079;AVGPOST=0.9943;RSQ=0.6988;ERATE=0.0007;THETA=0.0037;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 143753766 . T TAA 264 PASS INDEL;BAVGPOST=0.988;BRSQ=0.524;LDAF=0.0144;AVGPOST=0.9841;RSQ=0.5015;ERATE=0.0044;THETA=0.0035;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 143755907 . GTGTATATATA G 536 PASS INDEL;BAVGPOST=0.969;BRSQ=0.307;LDAF=0.0338;AVGPOST=0.9482;RSQ=0.2853;ERATE=0.0066;THETA=0.0054;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 143755911 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.835;BRSQ=0.273;LDAF=0.1439;AVGPOST=0.8254;RSQ=0.4058;ERATE=0.0101;THETA=0.0045;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 143755932 . T TATAC 8980 PASS INDEL;BAVGPOST=0.434;BRSQ=0.136;LDAF=0.5884;AVGPOST=0.6149;RSQ=0.3078;ERATE=0.0108;THETA=0.0099;AC=1473;AN=2184 GT:DS:GL:BD 0.67445058 1 1 143756602 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.6162;ERATE=0.0004;THETA=0.0108;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143757360 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.808;LDAF=0.0439;AVGPOST=0.9809;RSQ=0.8073;ERATE=0.0005;THETA=0.0013;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 143757705 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9244;ERATE=0.0004;THETA=0.0035;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143758660 . C CT 280 PASS INDEL;BAVGPOST=0.717;BRSQ=0.123;LDAF=0.2115;AVGPOST=0.6912;RSQ=0.2195;ERATE=0.0129;THETA=0.0039;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 143758888 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.681;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7560;ERATE=0.0005;THETA=0.0024;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143759119 . AC A 395 PASS INDEL;BAVGPOST=0.983;BRSQ=0.407;LDAF=0.0212;AVGPOST=0.9701;RSQ=0.3584;ERATE=0.0017;THETA=0.0066;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 143759509 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.742;LDAF=0.0172;AVGPOST=0.9919;RSQ=0.7975;ERATE=0.0018;THETA=0.0065;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 143759805 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7038;ERATE=0.0005;THETA=0.0056;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143760087 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.550;LDAF=0.0016;AVGPOST=0.9968;RSQ=0.1246;ERATE=0.0006;THETA=0.0040;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 143760090 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.587;LDAF=0.0302;AVGPOST=0.9748;RSQ=0.6723;ERATE=0.0012;THETA=0.0069;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 143760243 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.660;LDAF=0.0198;AVGPOST=0.9901;RSQ=0.7887;ERATE=0.0008;THETA=0.0027;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 143761299 . G GC 800 PASS INDEL;BAVGPOST=0.979;BRSQ=0.641;LDAF=0.0377;AVGPOST=0.9685;RSQ=0.6604;ERATE=0.0053;THETA=0.0059;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 143761330 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.552;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5938;ERATE=0.0004;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143761353 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.812;LDAF=0.0475;AVGPOST=0.9770;RSQ=0.7847;ERATE=0.0007;THETA=0.0109;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 143761875 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.699;LDAF=0.0650;AVGPOST=0.9591;RSQ=0.7377;ERATE=0.0013;THETA=0.0072;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 143761892 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.547;LDAF=0.0155;AVGPOST=0.9877;RSQ=0.6971;ERATE=0.0007;THETA=0.0051;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 143761911 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4765;ERATE=0.0005;THETA=0.0129;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143761982 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0053;AVGPOST=0.9985;RSQ=0.8803;ERATE=0.0004;THETA=0.0051;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 143762373 . A AT 30 PASS INDEL;BAVGPOST=0.993;BRSQ=0.413;LDAF=0.0098;AVGPOST=0.9855;RSQ=0.3453;ERATE=0.0035;THETA=0.0069;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 143764776 . T TA 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0021;AVGPOST=0.9967;RSQ=0.3200;ERATE=0.0004;THETA=0.0119;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143765225 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.471;LDAF=0.0142;AVGPOST=0.9834;RSQ=0.5275;ERATE=0.0017;THETA=0.0068;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 143766328 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6392;ERATE=0.0004;THETA=0.0192;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143767605 . TC T 203 PASS INDEL;BAVGPOST=0.998;BRSQ=0.571;LDAF=0.0027;AVGPOST=0.9976;RSQ=0.5395;ERATE=0.0007;THETA=0.0102;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143767646 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0076;AVGPOST=0.9982;RSQ=0.8931;ERATE=0.0011;THETA=0.0030;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 143767784 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0034;AVGPOST=0.9992;RSQ=0.9098;ERATE=0.0004;THETA=0.0068;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 143767943 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.879;LDAF=0.0782;AVGPOST=0.9831;RSQ=0.9028;ERATE=0.0007;THETA=0.0056;AC=161;AN=2184 GT:DS:GL:BD 0.07371795 0 1 143768084 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.767;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.5917;ERATE=0.0004;THETA=0.0068;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143768151 . ATTTCTTTC A 899 PASS INDEL;BAVGPOST=0.934;BRSQ=0.324;LDAF=0.0636;AVGPOST=0.9170;RSQ=0.3995;ERATE=0.0056;THETA=0.0073;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 143768207 . C CT 1278 PASS INDEL;BAVGPOST=0.891;BRSQ=0.411;LDAF=0.1002;AVGPOST=0.9014;RSQ=0.5138;ERATE=0.0019;THETA=0.0117;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 143768209 . TC T 465 PASS INDEL;BAVGPOST=0.893;BRSQ=0.403;LDAF=0.1019;AVGPOST=0.9003;RSQ=0.5146;ERATE=0.0032;THETA=0.0160;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 143769535 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.760;LDAF=0.0024;AVGPOST=0.9991;RSQ=0.8265;ERATE=0.0004;THETA=0.0068;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143769556 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0055;AVGPOST=0.9983;RSQ=0.8970;ERATE=0.0004;THETA=0.0032;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 143769609 . C CT 128 PASS INDEL;BAVGPOST=0.698;BRSQ=0.091;LDAF=0.2011;AVGPOST=0.6911;RSQ=0.1853;ERATE=0.0171;THETA=0.0094;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 143769721 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.655;LDAF=0.0033;AVGPOST=0.9962;RSQ=0.5588;ERATE=0.0013;THETA=0.0093;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143770217 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.533;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5512;ERATE=0.0006;THETA=0.0061;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143770250 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7457;ERATE=0.0005;THETA=0.0179;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143770262 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.778;LDAF=0.0218;AVGPOST=0.9887;RSQ=0.7728;ERATE=0.0025;THETA=0.0182;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 143770509 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.587;LDAF=0.0077;AVGPOST=0.9934;RSQ=0.6500;ERATE=0.0005;THETA=0.0109;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 143770556 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.875;BRSQ=0.750;LDAF=0.2382;AVGPOST=0.8505;RSQ=0.7275;ERATE=0.0006;THETA=0.0160;AC=458;AN=2184 GT:DS:GL:BD 0.20970696 0 1 143770586 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.481;LDAF=0.0057;AVGPOST=0.9941;RSQ=0.5561;ERATE=0.0009;THETA=0.0361;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 143879830 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.614;LDAF=0.0028;AVGPOST=0.9983;RSQ=0.7199;ERATE=0.0005;THETA=0.0145;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143879835 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.759;LDAF=0.0031;AVGPOST=0.9979;RSQ=0.7095;ERATE=0.0009;THETA=0.0372;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143879866 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.604;LDAF=0.0063;AVGPOST=0.9955;RSQ=0.6876;ERATE=0.0006;THETA=0.0248;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 143879871 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7421;ERATE=0.0004;THETA=0.0206;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143895898 . A ACC 461 PASS INDEL;BAVGPOST=0.748;BRSQ=0.038;LDAF=0.1747;AVGPOST=0.7056;RSQ=0.1141;ERATE=0.0157;THETA=0.0096;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 143897292 . C CCT 22 PASS INDEL;BAVGPOST=0.444;BRSQ=0.000;LDAF=0.1128;AVGPOST=0.7942;RSQ=0.0790;ERATE=0.0098;THETA=0.0161;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 143901888 . A AG 2271 PASS INDEL;BAVGPOST=0.994;BRSQ=0.882;LDAF=0.0292;AVGPOST=0.9807;RSQ=0.7200;ERATE=0.0010;THETA=0.0278;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 143901955 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.591;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5734;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143903462 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.457;LDAF=0.0108;AVGPOST=0.9861;RSQ=0.4478;ERATE=0.0016;THETA=0.0113;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 143903481 . CT C 200 PASS INDEL;BAVGPOST=0.955;BRSQ=0.404;LDAF=0.0430;AVGPOST=0.9489;RSQ=0.4897;ERATE=0.0101;THETA=0.0103;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 143904970 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5326;ERATE=0.0005;THETA=0.0119;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143905339 . AAT A 240 PASS INDEL;BAVGPOST=0.999;BRSQ=0.682;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7061;ERATE=0.0004;THETA=0.0036;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143905655 . TAC T 49 PASS INDEL;BAVGPOST=0.932;BRSQ=0.056;LDAF=0.1433;AVGPOST=0.7506;RSQ=0.1198;ERATE=0.0084;THETA=0.0100;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 143907064 . A AT 5364 PASS INDEL;BAVGPOST=0.902;BRSQ=0.493;LDAF=0.1136;AVGPOST=0.8975;RSQ=0.5751;ERATE=0.0050;THETA=0.0184;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 143908052 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.690;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4211;ERATE=0.0006;THETA=0.0175;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143908346 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.646;LDAF=0.0202;AVGPOST=0.9837;RSQ=0.6820;ERATE=0.0008;THETA=0.0061;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 143908347 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.600;LDAF=0.0037;AVGPOST=0.9967;RSQ=0.6405;ERATE=0.0009;THETA=0.0073;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143908633 . TA T 162 PASS INDEL;BAVGPOST=0.781;BRSQ=0.175;LDAF=0.1521;AVGPOST=0.7814;RSQ=0.2789;ERATE=0.0135;THETA=0.0277;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 143910179 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.533;LDAF=0.0089;AVGPOST=0.9901;RSQ=0.5088;ERATE=0.0010;THETA=0.0120;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 143911315 . CCTTTT C 590 PASS INDEL;BAVGPOST=0.953;BRSQ=0.186;LDAF=0.0345;AVGPOST=0.9508;RSQ=0.4163;ERATE=0.0011;THETA=0.0266;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 143911499 . AGT A 17 PASS INDEL;BAVGPOST=0.995;BRSQ=0.147;LDAF=0.0150;AVGPOST=0.9724;RSQ=0.1386;ERATE=0.0027;THETA=0.0133;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143911511 . CA C 30 PASS INDEL;BAVGPOST=0.992;BRSQ=0.128;LDAF=0.0281;AVGPOST=0.9461;RSQ=0.1079;ERATE=0.0034;THETA=0.0234;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143911729 . AT A 1884 PASS INDEL;BAVGPOST=0.893;BRSQ=0.506;LDAF=0.1237;AVGPOST=0.9073;RSQ=0.6540;ERATE=0.0117;THETA=0.0257;AC=225;AN=2184 GT:DS:GL:BD 0.10302198 0 1 143911971 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.890;LDAF=0.1092;AVGPOST=0.9711;RSQ=0.8823;ERATE=0.0040;THETA=0.0081;AC=221;AN=2184 GT:DS:GL:BD 0.10119048 0 1 143912009 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.860;LDAF=0.1092;AVGPOST=0.9733;RSQ=0.8846;ERATE=0.0092;THETA=0.0119;AC=222;AN=2184 GT:DS:GL:BD 0.10164835 0 1 143912754 . CT C 7 PASS INDEL;BAVGPOST=0.842;BRSQ=0.005;LDAF=0.0612;AVGPOST=0.8835;RSQ=0.0980;ERATE=0.0048;THETA=0.0163;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143913441 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.950;LDAF=0.0290;AVGPOST=0.9978;RSQ=0.9668;ERATE=0.0004;THETA=0.0085;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 143913526 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.957;LDAF=0.0642;AVGPOST=0.9966;RSQ=0.9766;ERATE=0.0005;THETA=0.0106;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 143913825 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.748;LDAF=0.0427;AVGPOST=0.9783;RSQ=0.8037;ERATE=0.0005;THETA=0.0169;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 143914163 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.775;LDAF=0.0600;AVGPOST=0.9756;RSQ=0.8337;ERATE=0.0008;THETA=0.0121;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 143915206 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.921;LDAF=0.0304;AVGPOST=0.9928;RSQ=0.8983;ERATE=0.0008;THETA=0.0007;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 143915793 . C CA 732 PASS INDEL;BAVGPOST=0.695;BRSQ=0.044;LDAF=0.1583;AVGPOST=0.7461;RSQ=0.1495;ERATE=0.0116;THETA=0.0038;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 143917186 . G GT 2158 PASS INDEL;BAVGPOST=0.888;BRSQ=0.418;LDAF=0.1242;AVGPOST=0.8704;RSQ=0.4646;ERATE=0.0133;THETA=0.0101;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 143917892 . C CT 488 PASS INDEL;BAVGPOST=0.605;BRSQ=0.084;LDAF=0.2285;AVGPOST=0.6705;RSQ=0.1892;ERATE=0.0119;THETA=0.0026;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 143918454 . AATTCTCT A 1958 PASS INDEL;BAVGPOST=0.952;BRSQ=0.409;LDAF=0.0316;AVGPOST=0.9838;RSQ=0.7760;ERATE=0.0011;THETA=0.0105;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 143918945 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0074;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143919960 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0023;AVGPOST=0.9974;RSQ=0.5611;ERATE=0.0006;THETA=0.0085;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143921163 . CA C 905 PASS INDEL;BAVGPOST=0.997;BRSQ=0.810;LDAF=0.0084;AVGPOST=0.9961;RSQ=0.8219;ERATE=0.0010;THETA=0.0055;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 143921918 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.714;BRSQ=0.150;LDAF=0.8039;AVGPOST=0.7137;RSQ=0.2940;ERATE=0.0074;THETA=0.0059;AC=2049;AN=2184 GT:DS:GL:BD 0.93818682 1 1 143922447 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.738;BRSQ=0.368;LDAF=0.4891;AVGPOST=0.7860;RSQ=0.4874;ERATE=0.0171;THETA=0.0084;AC=1007;AN=2184 GT:DS:GL:BD 0.46108058 0 1 143923153 . G GA 231 PASS INDEL;BAVGPOST=0.979;BRSQ=0.496;LDAF=0.0219;AVGPOST=0.9763;RSQ=0.5515;ERATE=0.0064;THETA=0.0026;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 143924810 . CCTT C 24154 PASS INDEL;BAVGPOST=0.619;BRSQ=0.291;LDAF=0.4267;AVGPOST=0.7306;RSQ=0.3756;ERATE=0.0253;THETA=0.0104;AC=775;AN=2184 GT:DS:GL:BD 0.35485348 0 1 143925719 . AT A 15 PASS INDEL;BAVGPOST=0.944;BRSQ=0.198;LDAF=0.0622;AVGPOST=0.9902;RSQ=0.9276;ERATE=0.0005;THETA=0.0072;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 143925953 . C CA 37 PASS INDEL;BAVGPOST=0.998;BRSQ=0.567;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.4863;ERATE=0.0006;THETA=0.0048;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143926023 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.950;BRSQ=0.781;LDAF=0.1280;AVGPOST=0.9529;RSQ=0.8240;ERATE=0.0082;THETA=0.0073;AC=249;AN=2184 GT:DS:GL:BD 0.11401099 0 1 143928194 . TC T 132 PASS INDEL;BAVGPOST=0.999;BRSQ=0.570;LDAF=0.0025;AVGPOST=0.9969;RSQ=0.4175;ERATE=0.0007;THETA=0.0028;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143928303 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.925;BRSQ=0.705;LDAF=0.1794;AVGPOST=0.9224;RSQ=0.7515;ERATE=0.0108;THETA=0.0138;AC=338;AN=2184 GT:DS:GL:BD 0.15476191 0 1 143928449 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6378;ERATE=0.0005;THETA=0.0149;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143932223 . C CT 58 PASS INDEL;BAVGPOST=0.882;BRSQ=0.081;LDAF=0.0731;AVGPOST=0.8716;RSQ=0.1653;ERATE=0.0060;THETA=0.0184;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 143932563 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.914;LDAF=0.0935;AVGPOST=0.9818;RSQ=0.9195;ERATE=0.0006;THETA=0.0049;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 143932597 . C CT 51 PASS INDEL;BAVGPOST=0.985;BRSQ=0.502;LDAF=0.0163;AVGPOST=0.9820;RSQ=0.5326;ERATE=0.0050;THETA=0.0215;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 143932606 . T TC 80 PASS INDEL;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5128;ERATE=0.0006;THETA=0.0096;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143932628 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.785;LDAF=0.0093;AVGPOST=0.9970;RSQ=0.8817;ERATE=0.0006;THETA=0.0041;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 143932766 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0005;THETA=0.0069;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143932796 . A AT 38 PASS INDEL;BAVGPOST=1.000;BRSQ=0.653;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4078;ERATE=0.0005;THETA=0.0098;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143932820 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.735;LDAF=0.0027;AVGPOST=0.9979;RSQ=0.6449;ERATE=0.0006;THETA=0.0059;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143933184 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.635;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6188;ERATE=0.0004;THETA=0.0073;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143933317 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.734;LDAF=0.0702;AVGPOST=0.9782;RSQ=0.8569;ERATE=0.0019;THETA=0.0062;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 143933335 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.653;LDAF=0.0028;AVGPOST=0.9971;RSQ=0.5746;ERATE=0.0006;THETA=0.0066;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143935953 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.918;LDAF=0.0283;AVGPOST=0.9961;RSQ=0.9482;ERATE=0.0005;THETA=0.0083;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 143936436 . AAG A 108 PASS INDEL;BAVGPOST=0.999;BRSQ=0.561;LDAF=0.0026;AVGPOST=0.9974;RSQ=0.5315;ERATE=0.0006;THETA=0.0147;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143937410 . TCA T 42 PASS INDEL;BAVGPOST=0.996;BRSQ=0.193;LDAF=0.0072;AVGPOST=0.9866;RSQ=0.1199;ERATE=0.0018;THETA=0.0120;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143939270 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.899;LDAF=0.0244;AVGPOST=0.9943;RSQ=0.9169;ERATE=0.0005;THETA=0.0076;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 143940312 . CT C 133 PASS INDEL;BAVGPOST=0.999;BRSQ=0.748;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.5167;ERATE=0.0006;THETA=0.0128;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143940876 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.956;BRSQ=0.770;LDAF=0.1149;AVGPOST=0.9514;RSQ=0.7981;ERATE=0.0085;THETA=0.0106;AC=226;AN=2184 GT:DS:GL:BD 0.10347985 0 1 143940909 rs71919334 G GT 554 PASS INDEL;BAVGPOST=0.375;BRSQ=0.037;LDAF=0.6425;AVGPOST=0.5565;RSQ=0.1554;ERATE=0.0122;THETA=0.0147;AC=1749;AN=2184 GT:DS:GL:BD 0.80082417 1 1 143941437 . GT G 106 PASS INDEL;BAVGPOST=0.987;BRSQ=0.272;LDAF=0.0224;AVGPOST=0.9662;RSQ=0.3968;ERATE=0.0033;THETA=0.0077;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 143943786 . TG T 28 PASS INDEL;BAVGPOST=0.959;BRSQ=0.035;LDAF=0.0807;AVGPOST=0.8646;RSQ=0.2165;ERATE=0.0061;THETA=0.0012;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 143945244 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.686;LDAF=0.0138;AVGPOST=0.9881;RSQ=0.6529;ERATE=0.0011;THETA=0.0103;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 143946683 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.784;LDAF=0.0201;AVGPOST=0.9951;RSQ=0.9021;ERATE=0.0007;THETA=0.0090;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 143946858 . CA C 142 PASS INDEL;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0141;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143947169 . A AT 373 PASS INDEL;BAVGPOST=0.860;BRSQ=0.131;LDAF=0.1240;AVGPOST=0.8097;RSQ=0.2511;ERATE=0.0070;THETA=0.0092;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 143947540 . GA G 10369 PASS INDEL;BAVGPOST=0.829;BRSQ=0.518;LDAF=0.2349;AVGPOST=0.8435;RSQ=0.6339;ERATE=0.0215;THETA=0.0043;AC=382;AN=2184 GT:DS:GL:BD 0.17490843 0 1 143947549 . AG A 57 PASS INDEL;BAVGPOST=0.986;BRSQ=0.577;LDAF=0.0203;AVGPOST=0.9783;RSQ=0.5940;ERATE=0.0008;THETA=0.0105;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 143947925 . TAAC T 379 PASS INDEL;BAVGPOST=0.983;BRSQ=0.517;LDAF=0.0120;AVGPOST=0.9894;RSQ=0.6688;ERATE=0.0005;THETA=0.0008;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 143949700 . C CT 544 PASS INDEL;BAVGPOST=0.992;BRSQ=0.598;LDAF=0.0103;AVGPOST=0.9918;RSQ=0.6474;ERATE=0.0009;THETA=0.0180;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 143951289 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.547;LDAF=0.0343;AVGPOST=0.9676;RSQ=0.6693;ERATE=0.0004;THETA=0.0028;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 143951397 . G GTTT 118 PASS INDEL;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5266;ERATE=0.0006;THETA=0.0105;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143951400 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.731;LDAF=0.0043;AVGPOST=0.9973;RSQ=0.7494;ERATE=0.0007;THETA=0.0134;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 143952889 . GC G 16995 PASS INDEL;BAVGPOST=0.964;BRSQ=0.831;LDAF=0.0889;AVGPOST=0.9783;RSQ=0.9180;ERATE=0.0020;THETA=0.0045;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 143959618 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.797;LDAF=0.0054;AVGPOST=0.9972;RSQ=0.8117;ERATE=0.0004;THETA=0.0063;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 143963903 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.636;LDAF=0.0251;AVGPOST=0.9912;RSQ=0.8565;ERATE=0.0006;THETA=0.0098;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 143964223 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.920;BRSQ=0.728;LDAF=0.2153;AVGPOST=0.9180;RSQ=0.7660;ERATE=0.0140;THETA=0.0152;AC=413;AN=2184 GT:DS:GL:BD 0.18910256 0 1 143967430 . CT C 835 PASS INDEL;BAVGPOST=0.838;BRSQ=0.262;LDAF=0.1636;AVGPOST=0.7807;RSQ=0.2975;ERATE=0.0293;THETA=0.0108;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 143968236 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.941;BRSQ=0.731;LDAF=0.1325;AVGPOST=0.9381;RSQ=0.7690;ERATE=0.0060;THETA=0.0084;AC=242;AN=2184 GT:DS:GL:BD 0.11080586 0 1 143968246 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.634;LDAF=0.0100;AVGPOST=0.9912;RSQ=0.6175;ERATE=0.0009;THETA=0.0130;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 143968436 . A AG 2673 PASS INDEL;BAVGPOST=0.693;BRSQ=0.180;LDAF=0.2598;AVGPOST=0.6794;RSQ=0.2767;ERATE=0.0300;THETA=0.0083;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 143970436 . CA C 104 PASS INDEL;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5655;ERATE=0.0005;THETA=0.0175;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143971810 . A AG 15 PASS INDEL;BAVGPOST=0.970;BRSQ=0.041;LDAF=0.0505;AVGPOST=0.9037;RSQ=0.1095;ERATE=0.0045;THETA=0.0331;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143972584 . T TG 1049 PASS INDEL;BAVGPOST=0.996;BRSQ=0.834;LDAF=0.0100;AVGPOST=0.9961;RSQ=0.8451;ERATE=0.0008;THETA=0.0197;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 143972870 . TCA T 110 PASS INDEL;BAVGPOST=0.997;BRSQ=0.590;LDAF=0.0056;AVGPOST=0.9933;RSQ=0.4458;ERATE=0.0013;THETA=0.0117;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143972898 . TA T 900 PASS INDEL;BAVGPOST=0.845;BRSQ=0.309;LDAF=0.1455;AVGPOST=0.8351;RSQ=0.3980;ERATE=0.0162;THETA=0.0134;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 143977832 . A AT 18 PASS INDEL;BAVGPOST=0.997;BRSQ=0.502;LDAF=0.0043;AVGPOST=0.9943;RSQ=0.4527;ERATE=0.0011;THETA=0.0138;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143978374 rs3035943 TA T 44 PASS INDEL;BAVGPOST=0.768;BRSQ=0.016;LDAF=0.0985;AVGPOST=0.8241;RSQ=0.1167;ERATE=0.0071;THETA=0.0131;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 143978376 . TA T 995 PASS INDEL;BAVGPOST=0.477;BRSQ=0.037;LDAF=0.3057;AVGPOST=0.5846;RSQ=0.1502;ERATE=0.0212;THETA=0.0126;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 143978378 . T TA 772 PASS INDEL;BAVGPOST=0.509;BRSQ=0.027;LDAF=0.2823;AVGPOST=0.6029;RSQ=0.1510;ERATE=0.0164;THETA=0.0036;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 143978380 . T TA 188 PASS INDEL;BAVGPOST=0.777;BRSQ=0.067;LDAF=0.1113;AVGPOST=0.8122;RSQ=0.1774;ERATE=0.0047;THETA=0.0084;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 143980507 . ACT A 72 PASS INDEL;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0011;AVGPOST=0.9984;RSQ=0.3605;ERATE=0.0006;THETA=0.0042;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143981227 . T TA 9 PASS INDEL;BAVGPOST=0.976;BRSQ=0.060;LDAF=0.1283;AVGPOST=0.7700;RSQ=0.1233;ERATE=0.0045;THETA=0.0077;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 143982817 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.680;LDAF=0.0319;AVGPOST=0.9781;RSQ=0.7284;ERATE=0.0015;THETA=0.0058;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 143983223 rs72506218 T TA 27503 PASS INDEL;BAVGPOST=0.866;BRSQ=0.564;LDAF=0.3647;AVGPOST=0.8801;RSQ=0.6313;ERATE=0.0180;THETA=0.0033;AC=698;AN=2184 GT:DS:GL:BD 0.31959707 0 1 143986059 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.949;BRSQ=0.750;LDAF=0.1232;AVGPOST=0.9378;RSQ=0.7471;ERATE=0.0072;THETA=0.0142;AC=237;AN=2184 GT:DS:GL:BD 0.10851648 0 1 143986108 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.881;LDAF=0.0489;AVGPOST=0.9883;RSQ=0.9048;ERATE=0.0005;THETA=0.0172;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 143986125 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.691;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7272;ERATE=0.0003;THETA=0.0262;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 143986504 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.664;LDAF=0.0070;AVGPOST=0.9962;RSQ=0.7868;ERATE=0.0009;THETA=0.0130;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 143987268 . CTT C 411 PASS INDEL;BAVGPOST=0.882;BRSQ=0.348;LDAF=0.1009;AVGPOST=0.8778;RSQ=0.4119;ERATE=0.0061;THETA=0.0062;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 143987969 . TTATC T 173 PASS INDEL;BAVGPOST=0.991;BRSQ=0.436;LDAF=0.0125;AVGPOST=0.9825;RSQ=0.3783;ERATE=0.0034;THETA=0.0214;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 143988353 . ATATACT A 1313 PASS INDEL;BAVGPOST=0.992;BRSQ=0.728;LDAF=0.0163;AVGPOST=0.9914;RSQ=0.8039;ERATE=0.0006;THETA=0.0260;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 143988432 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.758;LDAF=0.0025;AVGPOST=0.9977;RSQ=0.6044;ERATE=0.0004;THETA=0.0089;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 143988648 . C CT 142 PASS INDEL;BAVGPOST=0.862;BRSQ=0.175;LDAF=0.1047;AVGPOST=0.8365;RSQ=0.2486;ERATE=0.0084;THETA=0.0104;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 143988961 . TG T 270 PASS INDEL;BAVGPOST=0.994;BRSQ=0.544;LDAF=0.0091;AVGPOST=0.9885;RSQ=0.4626;ERATE=0.0009;THETA=0.0118;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 143989071 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.824;LDAF=0.0048;AVGPOST=0.9986;RSQ=0.8811;ERATE=0.0008;THETA=0.0113;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 143989140 rs67614190 TAAGGCTC T 25576 PASS INDEL;BAVGPOST=0.836;BRSQ=0.494;LDAF=0.2765;AVGPOST=0.8304;RSQ=0.5719;ERATE=0.0354;THETA=0.0253;AC=429;AN=2184 GT:DS:GL:BD 0.19642857 0 1 143989224 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.960;LDAF=0.0267;AVGPOST=0.9961;RSQ=0.9447;ERATE=0.0006;THETA=0.0032;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 143989225 . GAA G 3079 PASS INDEL;BAVGPOST=0.976;BRSQ=0.804;LDAF=0.0714;AVGPOST=0.9749;RSQ=0.8523;ERATE=0.0076;THETA=0.0069;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 143989731 . CTTTTTTCTT C 17 PASS INDEL;BAVGPOST=0.992;BRSQ=0.102;LDAF=0.0084;AVGPOST=0.9860;RSQ=0.2209;ERATE=0.0021;THETA=0.0135;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 143989860 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.942;BRSQ=0.543;LDAF=0.0705;AVGPOST=0.9369;RSQ=0.6081;ERATE=0.0090;THETA=0.0081;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 143991250 . CT C 439 PASS INDEL;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9449;ERATE=0.0004;THETA=0.0072;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143991363 . T TTA 284 PASS INDEL;BAVGPOST=0.997;BRSQ=0.616;LDAF=0.0050;AVGPOST=0.9946;RSQ=0.4896;ERATE=0.0004;THETA=0.0112;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 143991608 . GT G 826 PASS INDEL;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0645;AVGPOST=0.9909;RSQ=0.9366;ERATE=0.0010;THETA=0.0098;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 143991880 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.849;LDAF=0.0512;AVGPOST=0.9863;RSQ=0.8962;ERATE=0.0008;THETA=0.0019;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 143994271 . ATTTG A 572 PASS INDEL;BAVGPOST=0.950;BRSQ=0.175;LDAF=0.0625;AVGPOST=0.8942;RSQ=0.2172;ERATE=0.0064;THETA=0.0044;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 143994791 . G GT 189 PASS INDEL;BAVGPOST=0.997;BRSQ=0.582;LDAF=0.0039;AVGPOST=0.9970;RSQ=0.7063;ERATE=0.0009;THETA=0.0082;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 143994869 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.878;LDAF=0.0482;AVGPOST=0.9870;RSQ=0.8943;ERATE=0.0005;THETA=0.0149;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 143995245 . CT C 282 PASS INDEL;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0026;AVGPOST=0.9988;RSQ=0.8298;ERATE=0.0008;THETA=0.0030;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 143996101 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5519;ERATE=0.0004;THETA=0.0135;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143996103 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.977;LDAF=0.0656;AVGPOST=0.9930;RSQ=0.9540;ERATE=0.0010;THETA=0.0036;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 143996176 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.660;LDAF=0.0650;AVGPOST=0.9621;RSQ=0.7766;ERATE=0.0013;THETA=0.0082;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 143996182 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.748;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5223;ERATE=0.0004;THETA=0.0123;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 143996712 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.618;LDAF=0.0269;AVGPOST=0.9778;RSQ=0.7033;ERATE=0.0005;THETA=0.0047;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 143997095 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.868;LDAF=0.7550;AVGPOST=0.9222;RSQ=0.8388;ERATE=0.0013;THETA=0.0076;AC=1684;AN=2184 GT:DS:GL:BD 0.77106225 1 1 143997630 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.813;LDAF=0.1177;AVGPOST=0.9646;RSQ=0.8549;ERATE=0.0033;THETA=0.0039;AC=236;AN=2184 GT:DS:GL:BD 0.10805861 0 1 143997633 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.878;LDAF=0.0154;AVGPOST=0.9944;RSQ=0.8651;ERATE=0.0023;THETA=0.0060;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 143997652 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.950;LDAF=0.0415;AVGPOST=0.9947;RSQ=0.9543;ERATE=0.0005;THETA=0.0034;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 144000083 . AT A 90 PASS INDEL;BAVGPOST=0.936;BRSQ=0.468;LDAF=0.0617;AVGPOST=0.9628;RSQ=0.7391;ERATE=0.0027;THETA=0.0054;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 144000202 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.908;LDAF=0.0291;AVGPOST=0.9951;RSQ=0.9349;ERATE=0.0005;THETA=0.0069;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 144000217 . G GT 1961 PASS INDEL;BAVGPOST=0.913;BRSQ=0.581;LDAF=0.1374;AVGPOST=0.8930;RSQ=0.5968;ERATE=0.0232;THETA=0.0074;AC=219;AN=2184 GT:DS:GL:BD 0.10027473 0 1 144000409 . AAG A 1311 PASS INDEL;BAVGPOST=0.986;BRSQ=0.747;LDAF=0.0306;AVGPOST=0.9906;RSQ=0.8774;ERATE=0.0010;THETA=0.0067;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 144002177 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9302;ERATE=0.0003;THETA=0.0058;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144002737 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.858;LDAF=0.0185;AVGPOST=0.9951;RSQ=0.8922;ERATE=0.0006;THETA=0.0056;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 144002800 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.976;LDAF=0.0252;AVGPOST=0.9979;RSQ=0.9688;ERATE=0.0003;THETA=0.0108;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 144002803 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8421;ERATE=0.0004;THETA=0.0091;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 144002837 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.797;LDAF=0.0092;AVGPOST=0.9969;RSQ=0.8596;ERATE=0.0008;THETA=0.0127;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 144002999 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144003000 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.894;LDAF=0.0589;AVGPOST=0.9923;RSQ=0.9461;ERATE=0.0005;THETA=0.0057;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 144003002 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.970;LDAF=0.0614;AVGPOST=0.9941;RSQ=0.9628;ERATE=0.0004;THETA=0.0046;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 144003003 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.943;LDAF=0.0237;AVGPOST=0.9963;RSQ=0.9452;ERATE=0.0004;THETA=0.0061;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 144003007 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.653;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6661;ERATE=0.0004;THETA=0.0155;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144003176 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.699;LDAF=0.0175;AVGPOST=0.9884;RSQ=0.7009;ERATE=0.0015;THETA=0.0107;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 144004160 . T TC 625 PASS INDEL;BAVGPOST=0.997;BRSQ=0.852;LDAF=0.0094;AVGPOST=0.9980;RSQ=0.9046;ERATE=0.0005;THETA=0.0037;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 144004385 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.937;BRSQ=0.424;LDAF=0.9419;AVGPOST=0.9298;RSQ=0.5273;ERATE=0.0025;THETA=0.0288;AC=2120;AN=2184 GT:DS:GL:BD 0.97069597 1 1 144006337 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.810;LDAF=0.0162;AVGPOST=0.9923;RSQ=0.8234;ERATE=0.0004;THETA=0.0079;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 144006901 . GC G 37 PASS INDEL;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.4243;ERATE=0.0003;THETA=0.0140;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144010636 . C CT 1518 PASS INDEL;BAVGPOST=0.990;BRSQ=0.761;LDAF=0.0221;AVGPOST=0.9874;RSQ=0.7621;ERATE=0.0027;THETA=0.0125;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 144010652 . CA C 522 PASS INDEL;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0077;AVGPOST=0.9979;RSQ=0.8828;ERATE=0.0006;THETA=0.0238;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 144010858 . A AG 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0026;AVGPOST=0.9965;RSQ=0.4337;ERATE=0.0004;THETA=0.0153;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144011543 . CA C 157 PASS INDEL;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8455;ERATE=0.0003;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144016494 . G GT 755 PASS INDEL;BAVGPOST=0.996;BRSQ=0.809;LDAF=0.0096;AVGPOST=0.9971;RSQ=0.8778;ERATE=0.0013;THETA=0.0121;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 144016928 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.554;LDAF=0.0142;AVGPOST=0.9917;RSQ=0.7505;ERATE=0.0011;THETA=0.0028;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 144018423 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.679;LDAF=0.0021;AVGPOST=0.9968;RSQ=0.3109;ERATE=0.0005;THETA=0.0190;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144018521 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.635;LDAF=0.0095;AVGPOST=0.9920;RSQ=0.6616;ERATE=0.0009;THETA=0.0132;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 144019282 . TG T 230 PASS INDEL;BAVGPOST=0.999;BRSQ=0.820;LDAF=0.0026;AVGPOST=0.9990;RSQ=0.8241;ERATE=0.0005;THETA=0.0023;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 144019508 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.692;LDAF=0.0176;AVGPOST=0.9858;RSQ=0.6923;ERATE=0.0003;THETA=0.0100;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 144019667 . CT C 149 PASS INDEL;BAVGPOST=0.998;BRSQ=0.737;LDAF=0.0061;AVGPOST=0.9931;RSQ=0.5281;ERATE=0.0014;THETA=0.0043;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 144019965 . AT A 79 PASS INDEL;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8338;ERATE=0.0003;THETA=0.0109;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144020056 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.905;BRSQ=0.647;LDAF=0.1956;AVGPOST=0.8966;RSQ=0.6855;ERATE=0.0213;THETA=0.0222;AC=359;AN=2184 GT:DS:GL:BD 0.16437729 0 1 144020170 . ATAAC A 493 PASS INDEL;BAVGPOST=0.997;BRSQ=0.659;LDAF=0.0065;AVGPOST=0.9935;RSQ=0.5481;ERATE=0.0009;THETA=0.0109;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 144020792 . G GT 137 PASS INDEL;BAVGPOST=0.998;BRSQ=0.729;LDAF=0.0041;AVGPOST=0.9974;RSQ=0.7446;ERATE=0.0008;THETA=0.0077;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 144021214 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.819;LDAF=0.0134;AVGPOST=0.9967;RSQ=0.8895;ERATE=0.0019;THETA=0.0058;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 144021258 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5922;ERATE=0.0005;THETA=0.0115;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144022238 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9201;ERATE=0.0004;THETA=0.0062;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144023499 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5624;ERATE=0.0004;THETA=0.0141;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144023523 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.732;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7212;ERATE=0.0004;THETA=0.0107;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144023671 . A AT 553 PASS INDEL;BAVGPOST=0.960;BRSQ=0.598;LDAF=0.0581;AVGPOST=0.9502;RSQ=0.6037;ERATE=0.0108;THETA=0.0145;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 144023684 . CT C 36 PASS INDEL;BAVGPOST=0.968;BRSQ=0.364;LDAF=0.0293;AVGPOST=0.9571;RSQ=0.3853;ERATE=0.0055;THETA=0.0043;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 144024789 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.618;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5025;ERATE=0.0005;THETA=0.0147;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144025079 rs68082252 G GT 2955 PASS INDEL;BAVGPOST=0.899;BRSQ=0.498;LDAF=0.1176;AVGPOST=0.9033;RSQ=0.6092;ERATE=0.0051;THETA=0.0096;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 144025269 . C CAG 29864 PASS INDEL;BAVGPOST=0.710;BRSQ=0.321;LDAF=0.4197;AVGPOST=0.7789;RSQ=0.4225;ERATE=0.0253;THETA=0.0211;AC=769;AN=2184 GT:DS:GL:BD 0.35210621 0 1 144027385 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.950;BRSQ=0.876;LDAF=0.2351;AVGPOST=0.9009;RSQ=0.8172;ERATE=0.0006;THETA=0.0036;AC=464;AN=2184 GT:DS:GL:BD 0.21245421 0 1 144028566 . C CG 19994 PASS INDEL;BAVGPOST=0.943;BRSQ=0.785;LDAF=0.1989;AVGPOST=0.9378;RSQ=0.8096;ERATE=0.0073;THETA=0.0146;AC=378;AN=2184 GT:DS:GL:BD 0.17307693 0 1 144029171 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7702;ERATE=0.0004;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144029221 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.938;BRSQ=0.683;LDAF=0.1168;AVGPOST=0.9394;RSQ=0.7480;ERATE=0.0016;THETA=0.0060;AC=223;AN=2184 GT:DS:GL:BD 0.10210623 0 1 144033087 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.611;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5044;ERATE=0.0005;THETA=0.0166;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144033391 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.681;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4801;ERATE=0.0005;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144034558 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.687;LDAF=0.0021;AVGPOST=0.9983;RSQ=0.6187;ERATE=0.0006;THETA=0.0110;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144035083 . C CT 196 PASS INDEL;BAVGPOST=0.989;BRSQ=0.656;LDAF=0.0223;AVGPOST=0.9768;RSQ=0.5474;ERATE=0.0075;THETA=0.0045;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 144035114 . TGG T 21 PASS INDEL;BAVGPOST=1.000;BRSQ=0.671;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.3624;ERATE=0.0006;THETA=0.0076;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144035272 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.913;LDAF=0.0253;AVGPOST=0.9965;RSQ=0.9466;ERATE=0.0004;THETA=0.0145;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 144036370 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5926;ERATE=0.0004;THETA=0.0049;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144037063 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.915;LDAF=0.0271;AVGPOST=0.9954;RSQ=0.9336;ERATE=0.0003;THETA=0.0119;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 144037273 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.740;LDAF=0.0032;AVGPOST=0.9980;RSQ=0.7407;ERATE=0.0008;THETA=0.0037;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 144037727 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.802;LDAF=0.0112;AVGPOST=0.9926;RSQ=0.7106;ERATE=0.0022;THETA=0.0028;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 144038287 . CATTT C 239 PASS INDEL;BAVGPOST=0.948;BRSQ=0.346;LDAF=0.0517;AVGPOST=0.9299;RSQ=0.3894;ERATE=0.0041;THETA=0.0070;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 144038596 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.840;BRSQ=0.160;LDAF=0.1230;AVGPOST=0.8069;RSQ=0.2200;ERATE=0.0141;THETA=0.0113;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 144042283 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.564;LDAF=0.0088;AVGPOST=0.9904;RSQ=0.5319;ERATE=0.0022;THETA=0.0157;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 144042615 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.447;LDAF=0.0113;AVGPOST=0.9857;RSQ=0.5505;ERATE=0.0008;THETA=0.0025;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 144043409 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.673;LDAF=0.0591;AVGPOST=0.9600;RSQ=0.6968;ERATE=0.0027;THETA=0.0156;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 144043580 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.594;LDAF=0.0251;AVGPOST=0.9787;RSQ=0.6836;ERATE=0.0032;THETA=0.0081;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 144043919 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0004;THETA=0.0057;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144044464 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8057;ERATE=0.0004;THETA=0.0077;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144045272 . CA C 304 PASS INDEL;BAVGPOST=0.999;BRSQ=0.712;LDAF=0.0026;AVGPOST=0.9985;RSQ=0.7317;ERATE=0.0004;THETA=0.0079;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144045362 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8519;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144045493 . A AT 107 PASS INDEL;BAVGPOST=0.987;BRSQ=0.360;LDAF=0.0147;AVGPOST=0.9789;RSQ=0.4072;ERATE=0.0051;THETA=0.0069;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 144048724 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.834;LDAF=0.0055;AVGPOST=0.9973;RSQ=0.7934;ERATE=0.0005;THETA=0.0112;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 144048740 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144049606 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0071;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144051365 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.796;LDAF=0.0085;AVGPOST=0.9955;RSQ=0.7755;ERATE=0.0006;THETA=0.0074;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 144051444 . CT C 2287 PASS INDEL;BAVGPOST=0.919;BRSQ=0.405;LDAF=0.0789;AVGPOST=0.9132;RSQ=0.5060;ERATE=0.0023;THETA=0.0036;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 144051681 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7683;ERATE=0.0004;THETA=0.0188;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144051929 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8374;ERATE=0.0004;THETA=0.0038;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144051943 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.657;LDAF=0.0035;AVGPOST=0.9983;RSQ=0.8042;ERATE=0.0004;THETA=0.0076;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 144052095 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6684;ERATE=0.0005;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144053709 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.898;LDAF=0.0207;AVGPOST=0.9956;RSQ=0.9174;ERATE=0.0004;THETA=0.0064;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 144054093 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.735;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5136;ERATE=0.0004;THETA=0.0101;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144054095 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.639;LDAF=0.0023;AVGPOST=0.9976;RSQ=0.6050;ERATE=0.0006;THETA=0.0066;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144056591 rs58511588 T TA 16923 PASS INDEL;BAVGPOST=0.867;BRSQ=0.507;LDAF=0.3827;AVGPOST=0.8693;RSQ=0.5935;ERATE=0.0085;THETA=0.0066;AC=749;AN=2184 GT:DS:GL:BD 0.34294870 0 1 144057515 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0020;AVGPOST=0.9992;RSQ=0.8367;ERATE=0.0005;THETA=0.0029;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144057922 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.784;LDAF=0.0063;AVGPOST=0.9956;RSQ=0.7080;ERATE=0.0018;THETA=0.0032;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 144057979 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.938;BRSQ=0.749;LDAF=0.1687;AVGPOST=0.9335;RSQ=0.7844;ERATE=0.0024;THETA=0.0076;AC=329;AN=2184 GT:DS:GL:BD 0.15064102 0 1 144058218 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.676;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4216;ERATE=0.0005;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144058236 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.600;LDAF=0.0122;AVGPOST=0.9899;RSQ=0.6673;ERATE=0.0018;THETA=0.0048;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 144058245 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.831;LDAF=0.0281;AVGPOST=0.9854;RSQ=0.7931;ERATE=0.0021;THETA=0.0098;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 144058251 rs72418317 AAG A 46 PASS INDEL;BAVGPOST=0.993;BRSQ=0.564;LDAF=0.0087;AVGPOST=0.9902;RSQ=0.5517;ERATE=0.0020;THETA=0.0027;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 144061215 . AGG A 134 PASS INDEL;BAVGPOST=0.997;BRSQ=0.524;LDAF=0.0037;AVGPOST=0.9961;RSQ=0.5141;ERATE=0.0008;THETA=0.0051;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144064254 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6406;ERATE=0.0004;THETA=0.0080;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144064400 . T TA 31 PASS INDEL;BAVGPOST=0.998;BRSQ=0.598;LDAF=0.0028;AVGPOST=0.9972;RSQ=0.5695;ERATE=0.0004;THETA=0.0060;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144064425 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.696;LDAF=0.0249;AVGPOST=0.9817;RSQ=0.7148;ERATE=0.0027;THETA=0.0037;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 144064428 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.749;LDAF=0.0236;AVGPOST=0.9867;RSQ=0.7789;ERATE=0.0019;THETA=0.0062;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 144065218 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.686;LDAF=0.0025;AVGPOST=0.9985;RSQ=0.7370;ERATE=0.0006;THETA=0.0074;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144065632 . G GTA 22567 PASS INDEL;BAVGPOST=0.911;BRSQ=0.688;LDAF=0.2395;AVGPOST=0.8696;RSQ=0.6591;ERATE=0.0038;THETA=0.0061;AC=432;AN=2184 GT:DS:GL:BD 0.19780220 0 1 144065745 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5799;ERATE=0.0004;THETA=0.0094;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144065938 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0004;THETA=0.0062;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144066158 . TG T 775 PASS INDEL;BAVGPOST=0.989;BRSQ=0.569;LDAF=0.0180;AVGPOST=0.9805;RSQ=0.5230;ERATE=0.0024;THETA=0.0042;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 144066326 rs60496705 AT A 33367 PASS INDEL;BAVGPOST=0.924;BRSQ=0.730;LDAF=0.3160;AVGPOST=0.9305;RSQ=0.7979;ERATE=0.0072;THETA=0.0093;AC=637;AN=2184 GT:DS:GL:BD 0.29166666 0 1 144066407 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0122;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144068213 . A AT 158 PASS INDEL;BAVGPOST=0.999;BRSQ=0.639;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.6004;ERATE=0.0005;THETA=0.0065;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144068228 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.756;LDAF=0.0024;AVGPOST=0.9985;RSQ=0.7826;ERATE=0.0004;THETA=0.0157;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144068657 . C CATT 429 PASS INDEL;BAVGPOST=0.986;BRSQ=0.640;LDAF=0.0212;AVGPOST=0.9851;RSQ=0.7149;ERATE=0.0074;THETA=0.0153;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 144068680 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.935;BRSQ=0.827;LDAF=0.2291;AVGPOST=0.9228;RSQ=0.8367;ERATE=0.0030;THETA=0.0183;AC=457;AN=2184 GT:DS:GL:BD 0.20924908 0 1 144069400 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.690;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6010;ERATE=0.0004;THETA=0.0173;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144069406 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.704;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.6825;ERATE=0.0005;THETA=0.0294;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144069687 . G GA 48 PASS INDEL;BAVGPOST=0.993;BRSQ=0.508;LDAF=0.0083;AVGPOST=0.9908;RSQ=0.5225;ERATE=0.0035;THETA=0.0177;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 144069729 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0052;AVGPOST=0.9983;RSQ=0.8578;ERATE=0.0004;THETA=0.0141;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 144069736 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0118;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144069772 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.777;LDAF=0.0316;AVGPOST=0.9862;RSQ=0.8340;ERATE=0.0007;THETA=0.0162;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 144069825 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.882;BRSQ=0.448;LDAF=0.1188;AVGPOST=0.8947;RSQ=0.5757;ERATE=0.0020;THETA=0.0122;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 144075740 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.653;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4787;ERATE=0.0005;THETA=0.0079;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144076747 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.775;LDAF=0.0109;AVGPOST=0.9952;RSQ=0.8327;ERATE=0.0004;THETA=0.0009;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 144077460 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.773;LDAF=0.0283;AVGPOST=0.9859;RSQ=0.7882;ERATE=0.0006;THETA=0.0106;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 144077594 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.658;LDAF=0.0051;AVGPOST=0.9957;RSQ=0.6753;ERATE=0.0004;THETA=0.0063;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 144077914 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.743;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6699;ERATE=0.0004;THETA=0.0079;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144078513 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6399;ERATE=0.0004;THETA=0.0129;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144079637 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.423;LDAF=0.0027;AVGPOST=0.9961;RSQ=0.3380;ERATE=0.0011;THETA=0.0171;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144080718 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.824;BRSQ=0.338;LDAF=0.1823;AVGPOST=0.7864;RSQ=0.3945;ERATE=0.0100;THETA=0.0064;AC=177;AN=2184 GT:DS:GL:BD 0.08104396 0 1 144082063 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.649;LDAF=0.0074;AVGPOST=0.9943;RSQ=0.6563;ERATE=0.0011;THETA=0.0194;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 144083338 . T TC 97 PASS INDEL;BAVGPOST=0.944;BRSQ=0.161;LDAF=0.0622;AVGPOST=0.8925;RSQ=0.1844;ERATE=0.0046;THETA=0.0074;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 144083424 . G GC 120 PASS INDEL;BAVGPOST=0.984;BRSQ=0.412;LDAF=0.0149;AVGPOST=0.9813;RSQ=0.4438;ERATE=0.0015;THETA=0.0090;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 144083425 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.613;LDAF=0.0313;AVGPOST=0.9771;RSQ=0.6992;ERATE=0.0009;THETA=0.0145;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 144083791 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.877;BRSQ=0.132;LDAF=0.9099;AVGPOST=0.8523;RSQ=0.2554;ERATE=0.0089;THETA=0.0047;AC=2127;AN=2184 GT:DS:GL:BD 0.97390109 1 1 144083894 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.891;LDAF=0.0357;AVGPOST=0.9851;RSQ=0.8357;ERATE=0.0004;THETA=0.0020;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 144083927 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144084905 . C CT 475 PASS INDEL;BAVGPOST=0.965;BRSQ=0.140;LDAF=0.0530;AVGPOST=0.9060;RSQ=0.1953;ERATE=0.0051;THETA=0.0090;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 144086260 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7768;ERATE=0.0004;THETA=0.0086;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144086362 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0046;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144086410 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.702;LDAF=0.0133;AVGPOST=0.9917;RSQ=0.7276;ERATE=0.0011;THETA=0.0109;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 144086583 . G GT 1731 PASS INDEL;BAVGPOST=0.981;BRSQ=0.618;LDAF=0.0250;AVGPOST=0.9843;RSQ=0.7361;ERATE=0.0005;THETA=0.0066;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 144088280 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.634;LDAF=0.0047;AVGPOST=0.9968;RSQ=0.7210;ERATE=0.0006;THETA=0.0141;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 144088866 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7158;ERATE=0.0004;THETA=0.0161;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144092981 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.545;LDAF=0.0046;AVGPOST=0.9968;RSQ=0.7052;ERATE=0.0008;THETA=0.0091;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 144093132 . AGCT A 361 PASS INDEL;BAVGPOST=0.948;BRSQ=0.119;LDAF=0.0659;AVGPOST=0.8824;RSQ=0.1630;ERATE=0.0065;THETA=0.0147;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 144093381 . C CT 390 PASS INDEL;BAVGPOST=0.990;BRSQ=0.605;LDAF=0.0153;AVGPOST=0.9865;RSQ=0.6208;ERATE=0.0010;THETA=0.0069;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 144093812 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.895;LDAF=0.0374;AVGPOST=0.9915;RSQ=0.9054;ERATE=0.0005;THETA=0.0162;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 144095357 . G GTT 1343 PASS INDEL;BAVGPOST=0.982;BRSQ=0.669;LDAF=0.0319;AVGPOST=0.9754;RSQ=0.6598;ERATE=0.0015;THETA=0.0051;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 144148052 . TCA T 71 PASS INDEL;BAVGPOST=0.583;BRSQ=0.004;LDAF=0.1559;AVGPOST=0.7246;RSQ=0.1045;ERATE=0.0060;THETA=0.0245;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 144158354 . T TA 160 PASS INDEL;BAVGPOST=0.696;BRSQ=0.018;LDAF=0.2498;AVGPOST=0.6071;RSQ=0.0874;ERATE=0.0136;THETA=0.0072;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 144158659 . T TTG 15 PASS INDEL;BAVGPOST=0.926;BRSQ=0.065;LDAF=0.0741;AVGPOST=0.8683;RSQ=0.1637;ERATE=0.0084;THETA=0.0221;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 144159291 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.916;BRSQ=0.226;LDAF=0.0791;AVGPOST=0.8774;RSQ=0.2994;ERATE=0.0053;THETA=0.0074;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 144168520 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.520;BRSQ=0.260;LDAF=0.4632;AVGPOST=0.6725;RSQ=0.3643;ERATE=0.0091;THETA=0.0245;AC=840;AN=2184 GT:DS:GL:BD 0.38461539 0 1 144168528 . G GA 18 PASS INDEL;BAVGPOST=0.948;BRSQ=0.063;LDAF=0.0805;AVGPOST=0.8519;RSQ=0.1366;ERATE=0.0063;THETA=0.0187;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 144168532 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.767;BRSQ=0.240;LDAF=0.2189;AVGPOST=0.7448;RSQ=0.3886;ERATE=0.0074;THETA=0.0172;AC=220;AN=2184 GT:DS:GL:BD 0.10073260 0 1 144170346 . T TA 5507 PASS INDEL;BAVGPOST=0.927;BRSQ=0.356;LDAF=0.0472;AVGPOST=0.9546;RSQ=0.5883;ERATE=0.0012;THETA=0.0074;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 144179721 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.820;BRSQ=0.161;LDAF=0.1195;AVGPOST=0.8214;RSQ=0.2513;ERATE=0.0021;THETA=0.0041;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 144195087 . CTG C 396 PASS INDEL;BAVGPOST=0.579;BRSQ=0.026;LDAF=0.2171;AVGPOST=0.6589;RSQ=0.1229;ERATE=0.0209;THETA=0.0036;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 144197525 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.912;BRSQ=0.434;LDAF=0.0914;AVGPOST=0.9120;RSQ=0.5251;ERATE=0.0051;THETA=0.0152;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 144217359 . CTGTG C 6 PASS INDEL;BAVGPOST=0.351;BRSQ=0.001;LDAF=0.1680;AVGPOST=0.7080;RSQ=0.0852;ERATE=0.0160;THETA=0.0178;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 144220561 . CCT C 20 PASS INDEL;BAVGPOST=0.817;BRSQ=0.022;LDAF=0.1469;AVGPOST=0.7388;RSQ=0.0984;ERATE=0.0133;THETA=0.0412;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 144278051 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.759;BRSQ=0.084;LDAF=0.1329;AVGPOST=0.7901;RSQ=0.2466;ERATE=0.0088;THETA=0.0072;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 144281148 . C CT 246 PASS INDEL;BAVGPOST=0.373;BRSQ=0.004;LDAF=0.8114;AVGPOST=0.6821;RSQ=0.1068;ERATE=0.0130;THETA=0.0094;AC=2131;AN=2184 GT:DS:GL:BD 0.97573262 1 1 144285442 . G GA 173 PASS INDEL;BAVGPOST=0.712;BRSQ=0.076;LDAF=0.1865;AVGPOST=0.7003;RSQ=0.1600;ERATE=0.0132;THETA=0.0063;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 144287843 . C CT 21 PASS INDEL;BAVGPOST=0.377;BRSQ=0.001;LDAF=0.1234;AVGPOST=0.7771;RSQ=0.0909;ERATE=0.0075;THETA=0.0136;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 144295444 . A AAAAT 1672 PASS INDEL;BAVGPOST=0.853;BRSQ=0.135;LDAF=0.1076;AVGPOST=0.8271;RSQ=0.2514;ERATE=0.0067;THETA=0.0287;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 144300626 . ACTC A 51 PASS INDEL;BAVGPOST=0.377;BRSQ=0.001;LDAF=0.1320;AVGPOST=0.7612;RSQ=0.0881;ERATE=0.0112;THETA=0.0162;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 144303148 . A AGGTG 2145 PASS INDEL;BAVGPOST=0.692;BRSQ=0.015;LDAF=0.7906;AVGPOST=0.6501;RSQ=0.0974;ERATE=0.0096;THETA=0.0199;AC=2132;AN=2184 GT:DS:GL:BD 0.97619045 1 1 144303150 . G GT 310 PASS INDEL;BAVGPOST=0.394;BRSQ=0.014;LDAF=0.7282;AVGPOST=0.5871;RSQ=0.0935;ERATE=0.0202;THETA=0.0021;AC=2087;AN=2184 GT:DS:GL:BD 0.95558608 1 1 144304384 . GAAAC G 13 PASS INDEL;BAVGPOST=0.816;BRSQ=0.004;LDAF=0.0903;AVGPOST=0.8319;RSQ=0.0879;ERATE=0.0073;THETA=0.0066;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144317537 . A AT 9548 PASS INDEL;BAVGPOST=0.905;BRSQ=0.186;LDAF=0.9458;AVGPOST=0.9110;RSQ=0.2747;ERATE=0.0049;THETA=0.0124;AC=2152;AN=2184 GT:DS:GL:BD 0.98534799 1 1 144343616 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.686;BRSQ=0.216;LDAF=0.2230;AVGPOST=0.7440;RSQ=0.3908;ERATE=0.0096;THETA=0.0065;AC=232;AN=2184 GT:DS:GL:BD 0.10622711 0 1 144352220 . GTATATATATA G 65 PASS INDEL;BAVGPOST=0.928;BRSQ=0.045;LDAF=0.0607;AVGPOST=0.8874;RSQ=0.1227;ERATE=0.0033;THETA=0.0164;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 144352232 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.813;BRSQ=0.124;LDAF=0.0981;AVGPOST=0.8391;RSQ=0.2302;ERATE=0.0012;THETA=0.0080;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 144352234 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.794;BRSQ=0.125;LDAF=0.1594;AVGPOST=0.7407;RSQ=0.1982;ERATE=0.0104;THETA=0.0090;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 144352876 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.926;BRSQ=0.039;LDAF=0.0636;AVGPOST=0.8806;RSQ=0.1178;ERATE=0.0020;THETA=0.0050;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 144368091 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.804;BRSQ=0.049;LDAF=0.1043;AVGPOST=0.8171;RSQ=0.1487;ERATE=0.0082;THETA=0.0068;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 144368093 . AT A 18 PASS INDEL;BAVGPOST=0.786;BRSQ=0.007;LDAF=0.0826;AVGPOST=0.8450;RSQ=0.0939;ERATE=0.0066;THETA=0.0199;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144368107 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.841;BRSQ=0.041;LDAF=0.1289;AVGPOST=0.7716;RSQ=0.1173;ERATE=0.0099;THETA=0.0113;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 144369265 . CTT C 152 PASS INDEL;BAVGPOST=0.253;BRSQ=0.003;LDAF=0.1683;AVGPOST=0.7095;RSQ=0.1069;ERATE=0.0066;THETA=0.0265;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 144377860 . A AT 44 PASS INDEL;BAVGPOST=0.646;BRSQ=0.005;LDAF=0.0816;AVGPOST=0.8497;RSQ=0.1204;ERATE=0.0025;THETA=0.0126;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 144382877 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.629;BRSQ=0.060;LDAF=0.1376;AVGPOST=0.7924;RSQ=0.2701;ERATE=0.0051;THETA=0.0228;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 144382909 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.287;BRSQ=0.019;LDAF=0.1851;AVGPOST=0.7266;RSQ=0.2576;ERATE=0.0080;THETA=0.0098;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 144391091 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.500;BRSQ=0.110;LDAF=0.6712;AVGPOST=0.6277;RSQ=0.2789;ERATE=0.0132;THETA=0.0280;AC=1757;AN=2184 GT:DS:GL:BD 0.80448717 1 1 144394696 . TG T 15 PASS INDEL;BAVGPOST=0.823;BRSQ=0.009;LDAF=0.1384;AVGPOST=0.7527;RSQ=0.1052;ERATE=0.0090;THETA=0.0169;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 144395377 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.053;LDAF=0.0309;AVGPOST=0.9424;RSQ=0.1401;ERATE=0.0032;THETA=0.0129;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 144397698 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.950;BRSQ=0.509;LDAF=0.0645;AVGPOST=0.9309;RSQ=0.4936;ERATE=0.0106;THETA=0.0049;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 144451752 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.642;BRSQ=0.042;LDAF=0.1766;AVGPOST=0.7128;RSQ=0.1386;ERATE=0.0120;THETA=0.0346;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 144451837 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.651;BRSQ=0.339;LDAF=0.7069;AVGPOST=0.7256;RSQ=0.5261;ERATE=0.0107;THETA=0.0057;AC=1760;AN=2184 GT:DS:GL:BD 0.80586082 1 1 144454451 . TA T 2389 PASS INDEL;BAVGPOST=0.815;BRSQ=0.565;LDAF=0.2482;AVGPOST=0.8236;RSQ=0.6751;ERATE=0.0013;THETA=0.0169;AC=455;AN=2184 GT:DS:GL:BD 0.20833333 0 1 144454460 . A AT 13 PASS INDEL;BAVGPOST=0.989;BRSQ=0.326;LDAF=0.0099;AVGPOST=0.9839;RSQ=0.3225;ERATE=0.0023;THETA=0.0053;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 144454461 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.813;BRSQ=0.588;LDAF=0.3112;AVGPOST=0.8268;RSQ=0.6944;ERATE=0.0074;THETA=0.0181;AC=573;AN=2184 GT:DS:GL:BD 0.26236263 0 1 144454461 . A AT 14147 PASS INDEL;BAVGPOST=0.960;BRSQ=0.154;LDAF=0.9626;AVGPOST=0.9356;RSQ=0.2503;ERATE=0.0074;THETA=0.0139;AC=2162;AN=2184 GT:DS:GL:BD 0.98992676 1 1 144461391 . A AT 50 PASS INDEL;BAVGPOST=0.993;BRSQ=0.504;LDAF=0.0090;AVGPOST=0.9899;RSQ=0.5450;ERATE=0.0009;THETA=0.0210;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 144461658 . CAG C 884 PASS INDEL;BAVGPOST=0.991;BRSQ=0.526;LDAF=0.0124;AVGPOST=0.9859;RSQ=0.5249;ERATE=0.0011;THETA=0.0256;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 144463116 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.510;LDAF=0.0205;AVGPOST=0.9741;RSQ=0.4544;ERATE=0.0028;THETA=0.0063;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 144466186 . AT A 287 PASS INDEL;BAVGPOST=0.766;BRSQ=0.034;LDAF=0.2192;AVGPOST=0.6619;RSQ=0.1436;ERATE=0.0151;THETA=0.0113;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 144466303 . GA G 53 PASS INDEL;BAVGPOST=0.569;BRSQ=0.007;LDAF=0.2278;AVGPOST=0.6329;RSQ=0.1044;ERATE=0.0152;THETA=0.0100;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 144467158 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.579;LDAF=0.0028;AVGPOST=0.9955;RSQ=0.2629;ERATE=0.0007;THETA=0.0181;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144467923 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.637;LDAF=0.0066;AVGPOST=0.9947;RSQ=0.6616;ERATE=0.0008;THETA=0.0082;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 144467934 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.661;LDAF=0.0041;AVGPOST=0.9929;RSQ=0.2389;ERATE=0.0011;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144467990 . C CCTACAGG 633 PASS INDEL;BAVGPOST=0.857;BRSQ=0.234;LDAF=0.1399;AVGPOST=0.8001;RSQ=0.3079;ERATE=0.0084;THETA=0.0164;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 144468136 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.447;LDAF=0.0080;AVGPOST=0.9888;RSQ=0.4033;ERATE=0.0012;THETA=0.0162;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 144469631 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.813;LDAF=0.0301;AVGPOST=0.9917;RSQ=0.8879;ERATE=0.0008;THETA=0.0196;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 144469667 . CA C 200 PASS INDEL;BAVGPOST=1.000;BRSQ=0.727;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5943;ERATE=0.0005;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144471008 . A AGT 273 PASS INDEL;BAVGPOST=0.825;BRSQ=0.034;LDAF=0.2065;AVGPOST=0.6739;RSQ=0.1620;ERATE=0.0186;THETA=0.0188;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 144471023 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.846;BRSQ=0.044;LDAF=0.0779;AVGPOST=0.8649;RSQ=0.1980;ERATE=0.0044;THETA=0.0065;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 144471297 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.288;LDAF=0.0310;AVGPOST=0.9565;RSQ=0.4112;ERATE=0.0017;THETA=0.0120;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 144471605 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.600;LDAF=0.0393;AVGPOST=0.9637;RSQ=0.6367;ERATE=0.0010;THETA=0.0034;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 144471642 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.460;LDAF=0.0045;AVGPOST=0.9947;RSQ=0.4456;ERATE=0.0011;THETA=0.0060;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144471832 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.807;BRSQ=0.681;LDAF=0.6636;AVGPOST=0.8442;RSQ=0.7684;ERATE=0.0119;THETA=0.0085;AC=1513;AN=2184 GT:DS:GL:BD 0.69276559 1 1 144471834 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.907;BRSQ=0.702;LDAF=0.1502;AVGPOST=0.8970;RSQ=0.7405;ERATE=0.0022;THETA=0.0090;AC=256;AN=2184 GT:DS:GL:BD 0.11721612 0 1 144471838 . T TTG 434 PASS INDEL;BAVGPOST=0.987;BRSQ=0.426;LDAF=0.0130;AVGPOST=0.9830;RSQ=0.4595;ERATE=0.0017;THETA=0.0135;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 144472023 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.537;LDAF=0.0074;AVGPOST=0.9906;RSQ=0.4183;ERATE=0.0015;THETA=0.0044;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 144472320 . CTG C 140 PASS INDEL;BAVGPOST=0.977;BRSQ=0.297;LDAF=0.0243;AVGPOST=0.9630;RSQ=0.3417;ERATE=0.0028;THETA=0.0010;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 144474245 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.885;BRSQ=0.264;LDAF=0.9276;AVGPOST=0.9122;RSQ=0.5627;ERATE=0.0017;THETA=0.0099;AC=2090;AN=2184 GT:DS:GL:BD 0.95695972 1 1 144474317 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.456;LDAF=0.0026;AVGPOST=0.9973;RSQ=0.5441;ERATE=0.0006;THETA=0.0082;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144474542 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.879;BRSQ=0.785;LDAF=0.3098;AVGPOST=0.9101;RSQ=0.8805;ERATE=0.0009;THETA=0.0019;AC=632;AN=2184 GT:DS:GL:BD 0.28937730 0 1 144474573 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.934;BRSQ=0.798;LDAF=0.1575;AVGPOST=0.9443;RSQ=0.8717;ERATE=0.0005;THETA=0.0055;AC=328;AN=2184 GT:DS:GL:BD 0.15018316 0 1 144476032 . C CA 392 PASS INDEL;BAVGPOST=0.747;BRSQ=0.131;LDAF=0.1979;AVGPOST=0.7133;RSQ=0.2335;ERATE=0.0197;THETA=0.0013;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 144476048 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.705;LDAF=0.0352;AVGPOST=0.9787;RSQ=0.7544;ERATE=0.0019;THETA=0.0075;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 144476072 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.731;LDAF=0.0321;AVGPOST=0.9741;RSQ=0.6957;ERATE=0.0011;THETA=0.0077;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 144476203 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.709;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.3244;ERATE=0.0007;THETA=0.0039;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144476270 . C CT 414 PASS INDEL;BAVGPOST=0.934;BRSQ=0.407;LDAF=0.0762;AVGPOST=0.8826;RSQ=0.3075;ERATE=0.0049;THETA=0.0062;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 144477333 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.791;LDAF=0.0354;AVGPOST=0.9757;RSQ=0.6996;ERATE=0.0017;THETA=0.0015;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 144477765 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.609;LDAF=0.0047;AVGPOST=0.9930;RSQ=0.3921;ERATE=0.0009;THETA=0.0047;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144477794 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.522;LDAF=0.0039;AVGPOST=0.9963;RSQ=0.6022;ERATE=0.0008;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 144478338 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.772;BRSQ=0.634;LDAF=0.3270;AVGPOST=0.8337;RSQ=0.7944;ERATE=0.0014;THETA=0.0026;AC=672;AN=2184 GT:DS:GL:BD 0.30769232 0 1 144478615 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.490;LDAF=0.0086;AVGPOST=0.9908;RSQ=0.5372;ERATE=0.0009;THETA=0.0045;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 144478665 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.665;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.3451;ERATE=0.0007;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144478792 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.805;LDAF=0.0263;AVGPOST=0.9926;RSQ=0.8826;ERATE=0.0006;THETA=0.0105;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 144479557 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.930;BRSQ=0.785;LDAF=0.1540;AVGPOST=0.9485;RSQ=0.8805;ERATE=0.0007;THETA=0.0063;AC=321;AN=2184 GT:DS:GL:BD 0.14697802 0 1 144480028 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.801;BRSQ=0.592;LDAF=0.7737;AVGPOST=0.8390;RSQ=0.7364;ERATE=0.0049;THETA=0.0077;AC=1800;AN=2184 GT:DS:GL:BD 0.82417583 1 1 144480634 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.737;LDAF=0.0309;AVGPOST=0.9758;RSQ=0.7151;ERATE=0.0009;THETA=0.0028;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 144480793 . GAACA G 589 PASS INDEL;BAVGPOST=0.888;BRSQ=0.113;LDAF=0.0827;AVGPOST=0.8877;RSQ=0.4083;ERATE=0.0043;THETA=0.0015;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 144481200 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.945;BRSQ=0.744;LDAF=0.1149;AVGPOST=0.9559;RSQ=0.8357;ERATE=0.0005;THETA=0.0074;AC=244;AN=2184 GT:DS:GL:BD 0.11172161 0 1 144485616 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.816;BRSQ=0.048;LDAF=0.1560;AVGPOST=0.7476;RSQ=0.2175;ERATE=0.0087;THETA=0.0042;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 144486376 . C CAA 853 PASS INDEL;BAVGPOST=0.334;BRSQ=0.062;LDAF=0.5682;AVGPOST=0.5590;RSQ=0.2069;ERATE=0.0301;THETA=0.0064;AC=1317;AN=2184 GT:DS:GL:BD 0.60302198 1 1 144490028 . CAAAT C 181 PASS INDEL;BAVGPOST=0.577;BRSQ=0.001;LDAF=0.7969;AVGPOST=0.6710;RSQ=0.1439;ERATE=0.0133;THETA=0.0033;AC=2069;AN=2184 GT:DS:GL:BD 0.94734430 1 1 144490192 . AGAG A 17 PASS INDEL;BAVGPOST=0.617;BRSQ=0;LDAF=0.8766;AVGPOST=0.7770;RSQ=0.1247;ERATE=0.0107;THETA=0.0032;AC=2156;AN=2184 GT:DS:GL:BD 0.98717946 1 1 144495144 . GA G 128 PASS INDEL;BAVGPOST=0.791;BRSQ=0.048;LDAF=0.2071;AVGPOST=0.6779;RSQ=0.1753;ERATE=0.0167;THETA=0.0008;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 144497780 . AT A 234 PASS INDEL;BAVGPOST=0.593;BRSQ=0.101;LDAF=0.3001;AVGPOST=0.6213;RSQ=0.2270;ERATE=0.0167;THETA=0.0015;AC=323;AN=2184 GT:DS:GL:BD 0.14789377 0 1 144500086 . AC A 107 PASS INDEL;BAVGPOST=0.680;BRSQ=0.026;LDAF=0.2181;AVGPOST=0.6563;RSQ=0.1582;ERATE=0.0189;THETA=0.0065;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 144501613 . TTTTG T 26 PASS INDEL;BAVGPOST=0.402;BRSQ=0.001;LDAF=0.1325;AVGPOST=0.7677;RSQ=0.1629;ERATE=0.0051;THETA=0.0135;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 144510061 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.428;LDAF=0.0374;AVGPOST=0.9688;RSQ=0.6646;ERATE=0.0019;THETA=0.0073;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 144517918 . C CT 400 PASS INDEL;BAVGPOST=0.922;BRSQ=0.105;LDAF=0.0771;AVGPOST=0.8726;RSQ=0.2468;ERATE=0.0039;THETA=0.0132;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 144518628 . ATTG A 1802 PASS INDEL;BAVGPOST=0.377;BRSQ=0.050;LDAF=0.6694;AVGPOST=0.6027;RSQ=0.2383;ERATE=0.0115;THETA=0.0042;AC=1708;AN=2184 GT:DS:GL:BD 0.78205127 1 1 144519609 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.556;LDAF=0.0051;AVGPOST=0.9934;RSQ=0.4457;ERATE=0.0015;THETA=0.0056;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144520155 . AC A 44 PASS INDEL;BAVGPOST=0.997;BRSQ=0.455;LDAF=0.0076;AVGPOST=0.9906;RSQ=0.4687;ERATE=0.0012;THETA=0.0082;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 144520156 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.747;BRSQ=0.312;LDAF=0.3491;AVGPOST=0.7776;RSQ=0.4640;ERATE=0.0309;THETA=0.0207;AC=589;AN=2184 GT:DS:GL:BD 0.26968864 0 1 144520203 . A AC 1579 PASS INDEL;BAVGPOST=0.698;BRSQ=0.134;LDAF=0.2728;AVGPOST=0.6522;RSQ=0.2386;ERATE=0.0280;THETA=0.0050;AC=254;AN=2184 GT:DS:GL:BD 0.11630037 0 1 144520632 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.852;LDAF=0.1489;AVGPOST=0.9440;RSQ=0.8250;ERATE=0.0022;THETA=0.0092;AC=295;AN=2184 GT:DS:GL:BD 0.13507326 0 1 144520890 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.790;LDAF=0.0063;AVGPOST=0.9973;RSQ=0.8130;ERATE=0.0004;THETA=0.0053;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 144521019 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.769;LDAF=0.0040;AVGPOST=0.9984;RSQ=0.8138;ERATE=0.0004;THETA=0.0029;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 144521035 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.818;LDAF=0.0188;AVGPOST=0.9947;RSQ=0.8934;ERATE=0.0012;THETA=0.0061;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 144521043 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.791;LDAF=0.0062;AVGPOST=0.9979;RSQ=0.8586;ERATE=0.0005;THETA=0.0104;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 144521099 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.903;BRSQ=0.739;LDAF=0.1695;AVGPOST=0.9066;RSQ=0.7790;ERATE=0.0056;THETA=0.0061;AC=328;AN=2184 GT:DS:GL:BD 0.15018316 0 1 144521102 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.807;LDAF=0.0776;AVGPOST=0.9774;RSQ=0.8808;ERATE=0.0009;THETA=0.0042;AC=162;AN=2184 GT:DS:GL:BD 0.07417583 0 1 144521160 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.803;LDAF=0.0258;AVGPOST=0.9918;RSQ=0.8727;ERATE=0.0005;THETA=0.0037;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 144521184 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.674;LDAF=0.0356;AVGPOST=0.9866;RSQ=0.8536;ERATE=0.0008;THETA=0.0052;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 144521193 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.940;BRSQ=0.620;LDAF=0.0939;AVGPOST=0.9613;RSQ=0.8283;ERATE=0.0018;THETA=0.0044;AC=196;AN=2184 GT:DS:GL:BD 0.08974359 0 1 144521219 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.815;LDAF=0.0266;AVGPOST=0.9902;RSQ=0.8478;ERATE=0.0011;THETA=0.0019;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 144521237 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.919;BRSQ=0.801;LDAF=0.1815;AVGPOST=0.9305;RSQ=0.8481;ERATE=0.0014;THETA=0.0005;AC=367;AN=2184 GT:DS:GL:BD 0.16804029 0 1 144521239 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.874;BRSQ=0.817;LDAF=0.5544;AVGPOST=0.8875;RSQ=0.8550;ERATE=0.0017;THETA=0.0062;AC=1214;AN=2184 GT:DS:GL:BD 0.55586082 1 1 144521257 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.867;BRSQ=0.803;LDAF=0.5420;AVGPOST=0.8778;RSQ=0.8390;ERATE=0.0024;THETA=0.0027;AC=1201;AN=2184 GT:DS:GL:BD 0.54990840 1 1 144521283 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.136;LDAF=0.0116;AVGPOST=0.9876;RSQ=0.5808;ERATE=0.0009;THETA=0.0100;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 144521430 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.608;BRSQ=0.287;LDAF=0.6889;AVGPOST=0.6591;RSQ=0.4044;ERATE=0.0219;THETA=0.0046;AC=1780;AN=2184 GT:DS:GL:BD 0.81501830 1 1 144521492 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.875;BRSQ=0.763;LDAF=0.7075;AVGPOST=0.8689;RSQ=0.7878;ERATE=0.0077;THETA=0.0029;AC=1615;AN=2184 GT:DS:GL:BD 0.73946887 1 1 144521729 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.553;LDAF=0.0029;AVGPOST=0.9961;RSQ=0.3997;ERATE=0.0007;THETA=0.0045;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144521737 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.748;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4183;ERATE=0.0005;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144521759 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.727;LDAF=0.0083;AVGPOST=0.9942;RSQ=0.7598;ERATE=0.0006;THETA=0.0032;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 144522893 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.704;LDAF=0.0355;AVGPOST=0.9790;RSQ=0.7618;ERATE=0.0009;THETA=0.0078;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 144523140 . AT A 1018 PASS INDEL;BAVGPOST=0.477;BRSQ=0.216;LDAF=0.5909;AVGPOST=0.7234;RSQ=0.5931;ERATE=0.0113;THETA=0.0100;AC=1466;AN=2184 GT:DS:GL:BD 0.67124540 1 1 144524626 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.720;LDAF=0.0079;AVGPOST=0.9988;RSQ=0.9318;ERATE=0.0004;THETA=0.0053;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 144524781 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.929;LDAF=0.8701;AVGPOST=0.9661;RSQ=0.9084;ERATE=0.0019;THETA=0.0040;AC=1918;AN=2184 GT:DS:GL:BD 0.87820512 1 1 144524810 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.886;LDAF=0.1127;AVGPOST=0.9893;RSQ=0.9593;ERATE=0.0006;THETA=0.0010;AC=247;AN=2184 GT:DS:GL:BD 0.11309524 0 1 144524880 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.609;LDAF=0.0026;AVGPOST=0.9979;RSQ=0.6658;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144524912 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144524969 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.972;LDAF=0.7717;AVGPOST=0.9896;RSQ=0.9802;ERATE=0.0007;THETA=0.0024;AC=1687;AN=2184 GT:DS:GL:BD 0.77243590 1 1 144524976 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6088;ERATE=0.0004;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144524992 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.672;LDAF=0.0029;AVGPOST=0.9978;RSQ=0.6975;ERATE=0.0004;THETA=0.0017;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 144525067 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.814;LDAF=0.0965;AVGPOST=0.9722;RSQ=0.8784;ERATE=0.0018;THETA=0.0016;AC=207;AN=2184 GT:DS:GL:BD 0.09478022 0 1 144525184 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.799;BRSQ=0.630;LDAF=0.4050;AVGPOST=0.8339;RSQ=0.7542;ERATE=0.0056;THETA=0.0025;AC=941;AN=2184 GT:DS:GL:BD 0.43086082 0 1 144525236 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.906;BRSQ=0.856;LDAF=0.4935;AVGPOST=0.9511;RSQ=0.9382;ERATE=0.0022;THETA=0.0010;AC=1082;AN=2184 GT:DS:GL:BD 0.49542123 0 1 144525270 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.940;LDAF=0.8811;AVGPOST=0.9807;RSQ=0.9454;ERATE=0.0011;THETA=0.0042;AC=1927;AN=2184 GT:DS:GL:BD 0.88232601 1 1 144525467 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.925;BRSQ=0.804;LDAF=0.8670;AVGPOST=0.9469;RSQ=0.8632;ERATE=0.0018;THETA=0.0012;AC=1934;AN=2184 GT:DS:GL:BD 0.88553113 1 1 144525474 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.943;BRSQ=0.720;LDAF=0.1041;AVGPOST=0.9622;RSQ=0.8394;ERATE=0.0012;THETA=0.0040;AC=226;AN=2184 GT:DS:GL:BD 0.10347985 0 1 144525821 . CAG C 10508 PASS INDEL;BAVGPOST=0.774;BRSQ=0.521;LDAF=0.7177;AVGPOST=0.7149;RSQ=0.4996;ERATE=0.0284;THETA=0.0042;AC=1780;AN=2184 GT:DS:GL:BD 0.81501830 1 1 144526924 . G GT 731 PASS INDEL;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0075;AVGPOST=0.9984;RSQ=0.9127;ERATE=0.0034;THETA=0.0051;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 144529535 rs57781016 C CT 921 PASS INDEL;BAVGPOST=0.998;BRSQ=0.884;LDAF=0.0066;AVGPOST=0.9988;RSQ=0.9356;ERATE=0.0036;THETA=0.0013;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 144531402 . TC T 144 PASS INDEL;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9489;ERATE=0.0010;THETA=0.0023;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 144531454 . G GA 1239 PASS INDEL;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0105;AVGPOST=0.9987;RSQ=0.9585;ERATE=0.0004;THETA=0.0011;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 144532045 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.952;LDAF=0.9094;AVGPOST=0.9905;RSQ=0.9570;ERATE=0.0012;THETA=0.0016;AC=1991;AN=2184 GT:DS:GL:BD 0.91163003 1 1 144532774 . C CA 1771 PASS INDEL;BAVGPOST=0.940;BRSQ=0.581;LDAF=0.0746;AVGPOST=0.9586;RSQ=0.7782;ERATE=0.0008;THETA=0.0067;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 144533625 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.672;BRSQ=0.336;LDAF=0.2931;AVGPOST=0.7378;RSQ=0.4831;ERATE=0.0118;THETA=0.0057;AC=519;AN=2184 GT:DS:GL:BD 0.23763736 0 1 144533632 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.889;BRSQ=0.660;LDAF=0.8481;AVGPOST=0.8975;RSQ=0.7243;ERATE=0.0049;THETA=0.0019;AC=1934;AN=2184 GT:DS:GL:BD 0.88553113 1 1 144533647 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.923;LDAF=0.8824;AVGPOST=0.9569;RSQ=0.8546;ERATE=0.0030;THETA=0.0011;AC=1960;AN=2184 GT:DS:GL:BD 0.89743590 1 1 144533763 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.885;LDAF=0.8968;AVGPOST=0.9792;RSQ=0.9215;ERATE=0.0015;THETA=0.0008;AC=1970;AN=2184 GT:DS:GL:BD 0.90201467 1 1 144533846 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.967;LDAF=0.0274;AVGPOST=0.9988;RSQ=0.9799;ERATE=0.0003;THETA=0.0025;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 144533897 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.711;LDAF=0.0030;AVGPOST=0.9959;RSQ=0.3701;ERATE=0.0006;THETA=0.0037;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144533972 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.765;BRSQ=0.396;LDAF=0.3443;AVGPOST=0.7787;RSQ=0.4956;ERATE=0.0606;THETA=0.0004;AC=600;AN=2184 GT:DS:GL:BD 0.27472529 0 1 144534002 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.512;LDAF=0.0044;AVGPOST=0.9949;RSQ=0.5671;ERATE=0.0006;THETA=0.0014;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 144534025 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.947;BRSQ=0.761;LDAF=0.1013;AVGPOST=0.9649;RSQ=0.8626;ERATE=0.0006;THETA=0.0023;AC=210;AN=2184 GT:DS:GL:BD 0.09615385 0 1 144534083 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.954;LDAF=0.9040;AVGPOST=0.9877;RSQ=0.9543;ERATE=0.0011;THETA=0.0014;AC=1974;AN=2184 GT:DS:GL:BD 0.90384614 1 1 144534213 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.916;LDAF=0.9245;AVGPOST=0.9912;RSQ=0.9493;ERATE=0.0004;THETA=0.0056;AC=2017;AN=2184 GT:DS:GL:BD 0.92353481 1 1 144534635 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.959;LDAF=0.9156;AVGPOST=0.9935;RSQ=0.9643;ERATE=0.0007;THETA=0.0019;AC=2002;AN=2184 GT:DS:GL:BD 0.91666669 1 1 144534705 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.452;LDAF=0.0100;AVGPOST=0.9867;RSQ=0.5289;ERATE=0.0011;THETA=0.0022;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 144534875 rs11435132 G GA 16769 PASS INDEL;BAVGPOST=0.776;BRSQ=0.558;LDAF=0.7018;AVGPOST=0.7577;RSQ=0.5942;ERATE=0.0261;THETA=0.0047;AC=1712;AN=2184 GT:DS:GL:BD 0.78388280 1 1 144534919 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7404;ERATE=0.0004;THETA=0.0059;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144534933 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7210;ERATE=0.0010;THETA=0.0037;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144534966 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.973;LDAF=0.0277;AVGPOST=0.9983;RSQ=0.9727;ERATE=0.0005;THETA=0.0077;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 144535077 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.742;BRSQ=0.264;LDAF=0.2775;AVGPOST=0.7461;RSQ=0.3815;ERATE=0.0448;THETA=0.0071;AC=375;AN=2184 GT:DS:GL:BD 0.17170329 0 1 144535086 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.954;BRSQ=0.884;LDAF=0.8640;AVGPOST=0.9443;RSQ=0.8528;ERATE=0.0044;THETA=0.0038;AC=1929;AN=2184 GT:DS:GL:BD 0.88324177 1 1 144535195 rs111274750 A AT 6614 PASS INDEL;BAVGPOST=0.934;BRSQ=0.717;LDAF=0.1133;AVGPOST=0.9539;RSQ=0.8335;ERATE=0.0018;THETA=0.0037;AC=241;AN=2184 GT:DS:GL:BD 0.11034799 0 1 144535559 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.943;LDAF=0.8944;AVGPOST=0.9862;RSQ=0.9510;ERATE=0.0013;THETA=0.0026;AC=1960;AN=2184 GT:DS:GL:BD 0.89743590 1 1 144538405 . C CTG 8 PASS INDEL;BAVGPOST=0.987;BRSQ=0.052;LDAF=0.1510;AVGPOST=0.7712;RSQ=0.2798;ERATE=0.0101;THETA=0.0027;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 144539227 . AAC A 226 PASS INDEL;BAVGPOST=0.979;BRSQ=0.306;LDAF=0.0188;AVGPOST=0.9797;RSQ=0.5276;ERATE=0.0010;THETA=0.0029;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 144539361 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.961;LDAF=0.9050;AVGPOST=0.9884;RSQ=0.9541;ERATE=0.0010;THETA=0.0040;AC=1979;AN=2184 GT:DS:GL:BD 0.90613556 1 1 144539639 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.826;LDAF=0.0376;AVGPOST=0.9862;RSQ=0.8475;ERATE=0.0013;THETA=0.0092;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 144541816 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.633;BRSQ=0.295;LDAF=0.3180;AVGPOST=0.7729;RSQ=0.6286;ERATE=0.0020;THETA=0.0009;AC=691;AN=2184 GT:DS:GL:BD 0.31639194 0 1 144541843 rs57832186 ATAT A 808 PASS INDEL;BAVGPOST=0.531;BRSQ=0.231;LDAF=0.2362;AVGPOST=0.7275;RSQ=0.4552;ERATE=0.0056;THETA=0.0008;AC=284;AN=2184 GT:DS:GL:BD 0.13003664 0 1 144541844 rs59723503 TATTA T 4464 PASS INDEL;BAVGPOST=0.450;BRSQ=0.277;LDAF=0.1934;AVGPOST=0.7853;RSQ=0.4910;ERATE=0.0036;THETA=0.0010;AC=224;AN=2184 GT:DS:GL:BD 0.10256410 0 1 144542096 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.698;LDAF=0.0330;AVGPOST=0.9836;RSQ=0.8118;ERATE=0.0007;THETA=0.0057;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 144542135 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.618;LDAF=0.0476;AVGPOST=0.9822;RSQ=0.8561;ERATE=0.0004;THETA=0.0013;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 144542220 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.887;LDAF=0.1023;AVGPOST=0.9876;RSQ=0.9470;ERATE=0.0005;THETA=0.0054;AC=225;AN=2184 GT:DS:GL:BD 0.10302198 0 1 144543177 . G GT 7506 PASS INDEL;BAVGPOST=0.712;BRSQ=0.482;LDAF=0.4224;AVGPOST=0.7764;RSQ=0.6652;ERATE=0.0107;THETA=0.0027;AC=966;AN=2184 GT:DS:GL:BD 0.44230768 0 1 144543288 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.766;LDAF=0.0065;AVGPOST=0.9967;RSQ=0.7906;ERATE=0.0006;THETA=0.0043;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 144543453 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.615;BRSQ=0.370;LDAF=0.7055;AVGPOST=0.7581;RSQ=0.6281;ERATE=0.0058;THETA=0.0012;AC=1736;AN=2184 GT:DS:GL:BD 0.79487181 1 1 144543840 rs112323225 TC T 2954 PASS INDEL;BAVGPOST=0.626;BRSQ=0.159;LDAF=0.3427;AVGPOST=0.6915;RSQ=0.3794;ERATE=0.0383;THETA=0.0019;AC=532;AN=2184 GT:DS:GL:BD 0.24358974 0 1 144544047 . TGACA T 1215 PASS INDEL;BAVGPOST=0.978;BRSQ=0.815;LDAF=0.0617;AVGPOST=0.9903;RSQ=0.9294;ERATE=0.0007;THETA=0.0046;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 144544517 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.937;LDAF=0.0668;AVGPOST=0.9874;RSQ=0.9160;ERATE=0.0034;THETA=0.0020;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 144544557 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.956;BRSQ=0.630;LDAF=0.0808;AVGPOST=0.9378;RSQ=0.6447;ERATE=0.0157;THETA=0.0007;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 144544725 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.952;LDAF=0.7081;AVGPOST=0.9808;RSQ=0.9698;ERATE=0.0009;THETA=0.0006;AC=1545;AN=2184 GT:DS:GL:BD 0.70741761 1 1 144544730 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.753;LDAF=0.0386;AVGPOST=0.9822;RSQ=0.8256;ERATE=0.0008;THETA=0.0035;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 144544734 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.806;LDAF=0.0204;AVGPOST=0.9969;RSQ=0.9392;ERATE=0.0004;THETA=0.0061;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 144545083 . TG T 589 PASS INDEL;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0052;AVGPOST=0.9979;RSQ=0.8356;ERATE=0.0004;THETA=0.0012;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 144545299 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.738;LDAF=0.0168;AVGPOST=0.9883;RSQ=0.7023;ERATE=0.0043;THETA=0.0045;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 144545585 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.825;BRSQ=0.630;LDAF=0.7195;AVGPOST=0.7824;RSQ=0.6009;ERATE=0.0301;THETA=0.0007;AC=1709;AN=2184 GT:DS:GL:BD 0.78250915 1 1 144546490 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0023;AVGPOST=0.9993;RSQ=0.8710;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 144546569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.790;LDAF=0.0034;AVGPOST=0.9975;RSQ=0.6711;ERATE=0.0010;THETA=0.0068;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 144546624 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.914;LDAF=0.9013;AVGPOST=0.9888;RSQ=0.9570;ERATE=0.0007;THETA=0.0019;AC=1970;AN=2184 GT:DS:GL:BD 0.90201467 1 1 144546668 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0052;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144546754 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.935;BRSQ=0.534;LDAF=0.0910;AVGPOST=0.9112;RSQ=0.5546;ERATE=0.0170;THETA=0.0012;AC=131;AN=2184 GT:DS:GL:BD 0.05998169 0 1 144546895 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0040;AVGPOST=0.9995;RSQ=0.9507;ERATE=0.0004;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 144546997 . CT C 18 PASS INDEL;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4837;ERATE=0.0004;THETA=0.0084;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144547058 rs55988959 AT A 3113 PASS INDEL;BAVGPOST=0.977;BRSQ=0.822;LDAF=0.0739;AVGPOST=0.9726;RSQ=0.8409;ERATE=0.0094;THETA=0.0021;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 144547158 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.927;LDAF=0.9039;AVGPOST=0.9869;RSQ=0.9497;ERATE=0.0009;THETA=0.0064;AC=1972;AN=2184 GT:DS:GL:BD 0.90293038 1 1 144547238 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.806;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8364;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144548099 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.944;BRSQ=0.879;LDAF=0.8751;AVGPOST=0.9649;RSQ=0.9105;ERATE=0.0019;THETA=0.0014;AC=1927;AN=2184 GT:DS:GL:BD 0.88232601 1 1 144548139 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.745;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7417;ERATE=0.0005;THETA=0.0102;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144548150 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.782;LDAF=0.0609;AVGPOST=0.9799;RSQ=0.8713;ERATE=0.0006;THETA=0.0042;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 144548191 . C CTT 185 PASS INDEL;BAVGPOST=0.999;BRSQ=0.529;LDAF=0.0045;AVGPOST=0.9937;RSQ=0.4574;ERATE=0.0007;THETA=0.0020;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144548484 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.879;BRSQ=0.820;LDAF=0.4457;AVGPOST=0.9332;RSQ=0.9145;ERATE=0.0018;THETA=0.0022;AC=986;AN=2184 GT:DS:GL:BD 0.45146519 0 1 144548736 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.861;LDAF=0.0246;AVGPOST=0.9967;RSQ=0.9447;ERATE=0.0005;THETA=0.0016;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 144548770 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1146;AVGPOST=0.9972;RSQ=0.9892;ERATE=0.0004;THETA=0.0063;AC=251;AN=2184 GT:DS:GL:BD 0.11492674 0 1 144549027 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0043;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144549480 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.718;BRSQ=0.398;LDAF=0.2859;AVGPOST=0.7882;RSQ=0.5995;ERATE=0.0033;THETA=0.0008;AC=622;AN=2184 GT:DS:GL:BD 0.28479853 0 1 144549692 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.868;BRSQ=0.746;LDAF=0.7958;AVGPOST=0.8670;RSQ=0.7633;ERATE=0.0094;THETA=0.0014;AC=1820;AN=2184 GT:DS:GL:BD 0.83333331 1 1 144549763 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.665;BRSQ=0.485;LDAF=0.6618;AVGPOST=0.7251;RSQ=0.6165;ERATE=0.0207;THETA=0.0010;AC=1659;AN=2184 GT:DS:GL:BD 0.75961536 1 1 144549929 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.617;LDAF=0.9604;AVGPOST=0.9610;RSQ=0.6253;ERATE=0.0012;THETA=0.0024;AC=2118;AN=2184 GT:DS:GL:BD 0.96978021 1 1 144550299 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6657;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144551166 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8481;ERATE=0.0004;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144551842 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.931;BRSQ=0.803;LDAF=0.8804;AVGPOST=0.9486;RSQ=0.8584;ERATE=0.0030;THETA=0.0011;AC=1932;AN=2184 GT:DS:GL:BD 0.88461536 1 1 144551966 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.553;BRSQ=0.307;LDAF=0.7015;AVGPOST=0.7780;RSQ=0.6800;ERATE=0.0092;THETA=0.0059;AC=1722;AN=2184 GT:DS:GL:BD 0.78846157 1 1 144552032 . AGCTG A 715 PASS INDEL;BAVGPOST=0.961;BRSQ=0.488;LDAF=0.0401;AVGPOST=0.9674;RSQ=0.6859;ERATE=0.0022;THETA=0.0028;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 144552479 . AAT A 18 PASS INDEL;BAVGPOST=0.999;BRSQ=0.551;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5563;ERATE=0.0004;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144552668 . AT A 149 PASS INDEL;BAVGPOST=0.902;BRSQ=0.108;LDAF=0.1238;AVGPOST=0.8106;RSQ=0.2933;ERATE=0.0080;THETA=0.0007;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 144553201 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1134;AVGPOST=0.9979;RSQ=0.9917;ERATE=0.0005;THETA=0.0124;AC=248;AN=2184 GT:DS:GL:BD 0.11355311 0 1 144553381 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.558;BRSQ=0.304;LDAF=0.6221;AVGPOST=0.8037;RSQ=0.7227;ERATE=0.0068;THETA=0.0008;AC=1479;AN=2184 GT:DS:GL:BD 0.67719781 1 1 144553648 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.873;LDAF=0.0344;AVGPOST=0.9971;RSQ=0.9655;ERATE=0.0004;THETA=0.0008;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 144553654 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.992;LDAF=0.5712;AVGPOST=0.9858;RSQ=0.9818;ERATE=0.0007;THETA=0.0029;AC=1254;AN=2184 GT:DS:GL:BD 0.57417583 1 1 144553858 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.5628;ERATE=0.0005;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144553874 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144553878 . AG A 107 PASS INDEL;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0027;AVGPOST=0.9988;RSQ=0.7889;ERATE=0.0004;THETA=0.0015;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 144553887 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.954;LDAF=0.0076;AVGPOST=0.9994;RSQ=0.9663;ERATE=0.0004;THETA=0.0010;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 144553892 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0070;AVGPOST=0.9989;RSQ=0.9400;ERATE=0.0005;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 144554695 . GAC G 402 PASS INDEL;BAVGPOST=0.975;BRSQ=0.668;LDAF=0.0530;AVGPOST=0.9530;RSQ=0.5979;ERATE=0.0192;THETA=0.0009;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 144554824 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.909;LDAF=0.9360;AVGPOST=0.9879;RSQ=0.9273;ERATE=0.0005;THETA=0.0010;AC=2046;AN=2184 GT:DS:GL:BD 0.93681318 1 1 144554831 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.738;LDAF=0.0769;AVGPOST=0.9612;RSQ=0.7852;ERATE=0.0086;THETA=0.0011;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 144554894 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.839;BRSQ=0.519;LDAF=0.5409;AVGPOST=0.8633;RSQ=0.6072;ERATE=0.0450;THETA=0.0062;AC=1147;AN=2184 GT:DS:GL:BD 0.52518314 1 1 144555001 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.615;LDAF=0.0080;AVGPOST=0.9954;RSQ=0.7685;ERATE=0.0006;THETA=0.0041;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 144555190 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.948;LDAF=0.1606;AVGPOST=0.9943;RSQ=0.9839;ERATE=0.0007;THETA=0.0007;AC=349;AN=2184 GT:DS:GL:BD 0.15979853 0 1 144555192 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144555356 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.853;LDAF=0.0176;AVGPOST=0.9955;RSQ=0.9022;ERATE=0.0007;THETA=0.0023;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 144555407 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0011;AVGPOST=0.9984;RSQ=0.4287;ERATE=0.0004;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144556945 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.837;LDAF=0.0067;AVGPOST=0.9976;RSQ=0.8459;ERATE=0.0007;THETA=0.0009;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 144556951 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.639;LDAF=0.0026;AVGPOST=0.9966;RSQ=0.4267;ERATE=0.0007;THETA=0.0019;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144557006 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.920;BRSQ=0.529;LDAF=0.0626;AVGPOST=0.9720;RSQ=0.8215;ERATE=0.0009;THETA=0.0011;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 144557126 . CCAAA C 176 PASS INDEL;BAVGPOST=0.939;BRSQ=0.101;LDAF=0.0415;AVGPOST=0.9308;RSQ=0.2912;ERATE=0.0037;THETA=0.0034;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 144557287 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.889;BRSQ=0.735;LDAF=0.8189;AVGPOST=0.9061;RSQ=0.7931;ERATE=0.0071;THETA=0.0009;AC=1836;AN=2184 GT:DS:GL:BD 0.84065932 1 1 144557860 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.792;BRSQ=0.181;LDAF=0.1973;AVGPOST=0.7385;RSQ=0.3407;ERATE=0.0132;THETA=0.0008;AC=213;AN=2184 GT:DS:GL:BD 0.09752747 0 1 144558196 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.891;BRSQ=0.858;LDAF=0.5370;AVGPOST=0.8781;RSQ=0.8202;ERATE=0.0118;THETA=0.0037;AC=1207;AN=2184 GT:DS:GL:BD 0.55265570 1 1 144558197 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.793;LDAF=0.0431;AVGPOST=0.9867;RSQ=0.8773;ERATE=0.0010;THETA=0.0010;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 144558510 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.587;LDAF=0.0364;AVGPOST=0.9618;RSQ=0.5419;ERATE=0.0060;THETA=0.0010;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 144559095 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.912;BRSQ=0.849;LDAF=0.8423;AVGPOST=0.9536;RSQ=0.9071;ERATE=0.0018;THETA=0.0008;AC=1859;AN=2184 GT:DS:GL:BD 0.85119045 1 1 144559725 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.941;BRSQ=0.898;LDAF=0.8580;AVGPOST=0.9503;RSQ=0.8700;ERATE=0.0069;THETA=0.0009;AC=1911;AN=2184 GT:DS:GL:BD 0.87500000 1 1 144560575 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.617;LDAF=0.0307;AVGPOST=0.9802;RSQ=0.7181;ERATE=0.0008;THETA=0.0006;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 144560590 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.953;BRSQ=0.977;LDAF=0.5741;AVGPOST=0.9879;RSQ=0.9824;ERATE=0.0008;THETA=0.0016;AC=1258;AN=2184 GT:DS:GL:BD 0.57600731 1 1 144560753 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.991;LDAF=0.5756;AVGPOST=0.9882;RSQ=0.9830;ERATE=0.0013;THETA=0.0016;AC=1258;AN=2184 GT:DS:GL:BD 0.57600731 1 1 144560984 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.511;BRSQ=0.272;LDAF=0.6478;AVGPOST=0.8181;RSQ=0.7634;ERATE=0.0052;THETA=0.0006;AC=1469;AN=2184 GT:DS:GL:BD 0.67261904 1 1 144560996 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.586;BRSQ=0.048;LDAF=0.2863;AVGPOST=0.6759;RSQ=0.3841;ERATE=0.0099;THETA=0.0015;AC=396;AN=2184 GT:DS:GL:BD 0.18131869 0 1 144560997 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.595;BRSQ=0.092;LDAF=0.2149;AVGPOST=0.7337;RSQ=0.3821;ERATE=0.0042;THETA=0.0011;AC=239;AN=2184 GT:DS:GL:BD 0.10943224 0 1 144561258 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.611;BRSQ=0.036;LDAF=0.2791;AVGPOST=0.6456;RSQ=0.2762;ERATE=0.0222;THETA=0.0009;AC=323;AN=2184 GT:DS:GL:BD 0.14789377 0 1 144561268 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.748;BRSQ=0.034;LDAF=0.2285;AVGPOST=0.6705;RSQ=0.2374;ERATE=0.0113;THETA=0.0013;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 144561938 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0067;AVGPOST=0.9994;RSQ=0.9604;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 144561942 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.891;LDAF=0.0178;AVGPOST=0.9977;RSQ=0.9509;ERATE=0.0005;THETA=0.0010;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 144562798 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.679;LDAF=0.0057;AVGPOST=0.9928;RSQ=0.4948;ERATE=0.0012;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 144563149 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.958;BRSQ=0.986;LDAF=0.5666;AVGPOST=0.9726;RSQ=0.9616;ERATE=0.0019;THETA=0.0008;AC=1242;AN=2184 GT:DS:GL:BD 0.56868130 1 1 144563230 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.673;LDAF=0.0023;AVGPOST=0.9972;RSQ=0.4987;ERATE=0.0004;THETA=0.0017;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144564487 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.960;LDAF=0.0765;AVGPOST=0.9963;RSQ=0.9787;ERATE=0.0005;THETA=0.0023;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 144564596 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5950;ERATE=0.0003;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144564677 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.584;BRSQ=0.360;LDAF=0.7434;AVGPOST=0.8203;RSQ=0.7151;ERATE=0.0105;THETA=0.0039;AC=1747;AN=2184 GT:DS:GL:BD 0.79990840 1 1 144564812 . CCTTG C 447 PASS INDEL;BAVGPOST=0.960;BRSQ=0.122;LDAF=0.0152;AVGPOST=0.9777;RSQ=0.3995;ERATE=0.0010;THETA=0.0015;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 144564856 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.938;BRSQ=0.905;LDAF=0.8628;AVGPOST=0.9529;RSQ=0.8765;ERATE=0.0023;THETA=0.0004;AC=1915;AN=2184 GT:DS:GL:BD 0.87683153 1 1 144565025 . AT A 396 PASS INDEL;BAVGPOST=0.543;BRSQ=0.086;LDAF=0.2772;AVGPOST=0.6872;RSQ=0.3609;ERATE=0.0081;THETA=0.0071;AC=320;AN=2184 GT:DS:GL:BD 0.14652015 0 1 144565040 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.887;BRSQ=0.108;LDAF=0.1178;AVGPOST=0.8108;RSQ=0.2582;ERATE=0.0124;THETA=0.0065;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 144565220 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.688;LDAF=0.0074;AVGPOST=0.9934;RSQ=0.6475;ERATE=0.0006;THETA=0.0020;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 144565228 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.743;LDAF=0.0029;AVGPOST=0.9989;RSQ=0.8266;ERATE=0.0004;THETA=0.0071;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 144565816 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.961;LDAF=0.2954;AVGPOST=0.9819;RSQ=0.9657;ERATE=0.0009;THETA=0.0022;AC=639;AN=2184 GT:DS:GL:BD 0.29258242 0 1 144566027 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.871;LDAF=0.0219;AVGPOST=0.9959;RSQ=0.9320;ERATE=0.0004;THETA=0.0014;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 144566526 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.487;LDAF=0.0036;AVGPOST=0.9938;RSQ=0.2130;ERATE=0.0008;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144566558 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.950;BRSQ=0.591;LDAF=0.0634;AVGPOST=0.9722;RSQ=0.8229;ERATE=0.0006;THETA=0.0051;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 144566804 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.558;BRSQ=0.015;LDAF=0.2402;AVGPOST=0.6442;RSQ=0.1913;ERATE=0.0223;THETA=0.0010;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 144566860 rs35777663 CAG C 250 PASS INDEL;BAVGPOST=0.404;BRSQ=0.118;LDAF=0.3019;AVGPOST=0.6120;RSQ=0.2373;ERATE=0.0139;THETA=0.0043;AC=356;AN=2184 GT:DS:GL:BD 0.16300367 0 1 144566918 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.936;LDAF=0.0080;AVGPOST=0.9976;RSQ=0.8920;ERATE=0.0006;THETA=0.0034;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 144566939 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.410;LDAF=0.0040;AVGPOST=0.9946;RSQ=0.4179;ERATE=0.0010;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144567368 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.695;LDAF=0.0268;AVGPOST=0.9872;RSQ=0.8155;ERATE=0.0006;THETA=0.0035;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 144567796 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.934;LDAF=0.0743;AVGPOST=0.9917;RSQ=0.9548;ERATE=0.0006;THETA=0.0022;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 144568672 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.993;LDAF=0.8961;AVGPOST=0.9956;RSQ=0.9847;ERATE=0.0005;THETA=0.0011;AC=1960;AN=2184 GT:DS:GL:BD 0.89743590 1 1 144568811 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4054;ERATE=0.0004;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144569143 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.915;LDAF=0.1954;AVGPOST=0.9905;RSQ=0.9782;ERATE=0.0005;THETA=0.0014;AC=422;AN=2184 GT:DS:GL:BD 0.19322345 0 1 144569447 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.907;BRSQ=0.232;LDAF=0.0911;AVGPOST=0.8636;RSQ=0.3187;ERATE=0.0084;THETA=0.0010;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 144569448 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.493;LDAF=0.0330;AVGPOST=0.9543;RSQ=0.4366;ERATE=0.0024;THETA=0.0033;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 144569778 . A ATG 31 PASS INDEL;BAVGPOST=1.000;BRSQ=0.735;LDAF=0.0029;AVGPOST=0.9973;RSQ=0.6012;ERATE=0.0004;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 144569805 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.688;LDAF=0.0046;AVGPOST=0.9976;RSQ=0.7835;ERATE=0.0004;THETA=0.0018;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 144569824 . G GTA 115 PASS INDEL;BAVGPOST=0.999;BRSQ=0.595;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4734;ERATE=0.0006;THETA=0.0088;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144569865 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.336;LDAF=0.0026;AVGPOST=0.9967;RSQ=0.4672;ERATE=0.0007;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144570236 . T TG 5408 PASS INDEL;BAVGPOST=0.698;BRSQ=0.513;LDAF=0.7745;AVGPOST=0.8685;RSQ=0.7973;ERATE=0.0059;THETA=0.0064;AC=1780;AN=2184 GT:DS:GL:BD 0.81501830 1 1 144570255 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.451;LDAF=0.0262;AVGPOST=0.9772;RSQ=0.6724;ERATE=0.0011;THETA=0.0008;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 144570256 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.436;LDAF=0.0250;AVGPOST=0.9759;RSQ=0.6391;ERATE=0.0011;THETA=0.0062;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 144570290 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.861;BRSQ=0.740;LDAF=0.4460;AVGPOST=0.8661;RSQ=0.7809;ERATE=0.0033;THETA=0.0011;AC=993;AN=2184 GT:DS:GL:BD 0.45467034 0 1 144570290 . A AG 9822 PASS INDEL;BAVGPOST=0.859;BRSQ=0.738;LDAF=0.4447;AVGPOST=0.8633;RSQ=0.7815;ERATE=0.0023;THETA=0.0067;AC=989;AN=2184 GT:DS:GL:BD 0.45283884 0 1 144570524 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.914;BRSQ=0.897;LDAF=0.5831;AVGPOST=0.9601;RSQ=0.9428;ERATE=0.0016;THETA=0.0008;AC=1290;AN=2184 GT:DS:GL:BD 0.59065932 1 1 144570551 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.924;BRSQ=0.921;LDAF=0.5700;AVGPOST=0.9660;RSQ=0.9535;ERATE=0.0009;THETA=0.0055;AC=1254;AN=2184 GT:DS:GL:BD 0.57417583 1 1 144570557 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.719;LDAF=0.0047;AVGPOST=0.9951;RSQ=0.5375;ERATE=0.0013;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 144570560 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.725;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4772;ERATE=0.0007;THETA=0.0059;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144570632 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5598;ERATE=0.0004;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144570651 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.804;LDAF=0.0103;AVGPOST=0.9924;RSQ=0.7520;ERATE=0.0005;THETA=0.0071;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 144570685 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.962;LDAF=0.8893;AVGPOST=0.9873;RSQ=0.9594;ERATE=0.0012;THETA=0.0013;AC=1949;AN=2184 GT:DS:GL:BD 0.89239925 1 1 144570901 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.279;LDAF=0.0048;AVGPOST=0.9955;RSQ=0.6130;ERATE=0.0010;THETA=0.0056;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 144570915 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5321;ERATE=0.0004;THETA=0.0050;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144570938 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.881;LDAF=0.9079;AVGPOST=0.9791;RSQ=0.9041;ERATE=0.0025;THETA=0.0025;AC=1987;AN=2184 GT:DS:GL:BD 0.90979856 1 1 144570962 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.888;LDAF=0.0248;AVGPOST=0.9965;RSQ=0.9486;ERATE=0.0004;THETA=0.0006;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 144571011 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.827;BRSQ=0.601;LDAF=0.6828;AVGPOST=0.8254;RSQ=0.6441;ERATE=0.0420;THETA=0.0045;AC=1570;AN=2184 GT:DS:GL:BD 0.71886444 1 1 144571787 . C CT 5801 PASS INDEL;BAVGPOST=0.926;BRSQ=0.722;LDAF=0.1002;AVGPOST=0.9332;RSQ=0.7051;ERATE=0.0149;THETA=0.0114;AC=177;AN=2184 GT:DS:GL:BD 0.08104396 0 1 144573034 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.705;LDAF=0.0022;AVGPOST=0.9979;RSQ=0.5822;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144573040 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7494;ERATE=0.0004;THETA=0.0048;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144573083 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.461;LDAF=0.0041;AVGPOST=0.9955;RSQ=0.5610;ERATE=0.0006;THETA=0.0039;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 144573365 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.818;BRSQ=0.572;LDAF=0.2382;AVGPOST=0.8780;RSQ=0.7398;ERATE=0.0024;THETA=0.0119;AC=499;AN=2184 GT:DS:GL:BD 0.22847985 0 1 144573524 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8688;ERATE=0.0004;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144573734 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.453;BRSQ=0.207;LDAF=0.4181;AVGPOST=0.6383;RSQ=0.4055;ERATE=0.0055;THETA=0.0019;AC=919;AN=2184 GT:DS:GL:BD 0.42078754 0 1 144573755 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.412;BRSQ=0.234;LDAF=0.4155;AVGPOST=0.6376;RSQ=0.4033;ERATE=0.0032;THETA=0.0059;AC=950;AN=2184 GT:DS:GL:BD 0.43498167 0 1 144573784 . TTTAA T 386 PASS INDEL;BAVGPOST=0.885;BRSQ=0.105;LDAF=0.1054;AVGPOST=0.8315;RSQ=0.2790;ERATE=0.0075;THETA=0.0030;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 144573970 rs3065092 A ATT 113 PASS INDEL;BAVGPOST=0.336;BRSQ=0.008;LDAF=0.7557;AVGPOST=0.6395;RSQ=0.1872;ERATE=0.0145;THETA=0.0060;AC=1966;AN=2184 GT:DS:GL:BD 0.90018314 1 1 144574173 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.794;BRSQ=0.133;LDAF=0.0965;AVGPOST=0.8812;RSQ=0.4531;ERATE=0.0056;THETA=0.0074;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 144574178 . C CG 382 PASS INDEL;BAVGPOST=0.420;BRSQ=0.047;LDAF=0.8266;AVGPOST=0.8595;RSQ=0.6705;ERATE=0.0038;THETA=0.0112;AC=1903;AN=2184 GT:DS:GL:BD 0.87133700 1 1 144574208 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.860;BRSQ=0.074;LDAF=0.1402;AVGPOST=0.7798;RSQ=0.2381;ERATE=0.0112;THETA=0.0029;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 144574215 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.400;BRSQ=0.157;LDAF=0.6602;AVGPOST=0.6974;RSQ=0.5141;ERATE=0.0066;THETA=0.0044;AC=1668;AN=2184 GT:DS:GL:BD 0.76373625 1 1 144574613 . GGT G 297 PASS INDEL;BAVGPOST=0.869;BRSQ=0.223;LDAF=0.1082;AVGPOST=0.8684;RSQ=0.4626;ERATE=0.0060;THETA=0.0022;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 144574705 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.731;LDAF=0.0123;AVGPOST=0.9911;RSQ=0.7042;ERATE=0.0007;THETA=0.0060;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 144574745 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.665;LDAF=0.0094;AVGPOST=0.9947;RSQ=0.7620;ERATE=0.0013;THETA=0.0033;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 144574963 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.782;BRSQ=0.489;LDAF=0.2482;AVGPOST=0.8663;RSQ=0.7375;ERATE=0.0036;THETA=0.0036;AC=510;AN=2184 GT:DS:GL:BD 0.23351648 0 1 144574989 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.832;BRSQ=0.698;LDAF=0.8061;AVGPOST=0.8752;RSQ=0.7607;ERATE=0.0059;THETA=0.0076;AC=1846;AN=2184 GT:DS:GL:BD 0.84523809 1 1 144574991 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.702;BRSQ=0.552;LDAF=0.5199;AVGPOST=0.8682;RSQ=0.8336;ERATE=0.0016;THETA=0.0046;AC=1166;AN=2184 GT:DS:GL:BD 0.53388280 1 1 144576600 rs11421491 TTTG T 149 PASS INDEL;BAVGPOST=0.991;BRSQ=0.593;LDAF=0.0174;AVGPOST=0.9810;RSQ=0.5515;ERATE=0.0042;THETA=0.0040;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 144576762 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.877;BRSQ=0.783;LDAF=0.8111;AVGPOST=0.9078;RSQ=0.8004;ERATE=0.0016;THETA=0.0019;AC=1821;AN=2184 GT:DS:GL:BD 0.83379120 1 1 144576770 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.879;BRSQ=0.788;LDAF=0.8222;AVGPOST=0.9117;RSQ=0.8060;ERATE=0.0016;THETA=0.0031;AC=1847;AN=2184 GT:DS:GL:BD 0.84569597 1 1 144577160 . A AAAC 770 PASS INDEL;BAVGPOST=0.992;BRSQ=0.630;LDAF=0.0217;AVGPOST=0.9774;RSQ=0.5889;ERATE=0.0037;THETA=0.0021;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 144577175 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.729;LDAF=0.0537;AVGPOST=0.9901;RSQ=0.9254;ERATE=0.0008;THETA=0.0061;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 144577767 . G GA 1940 PASS INDEL;BAVGPOST=0.638;BRSQ=0.245;LDAF=0.3021;AVGPOST=0.7658;RSQ=0.5423;ERATE=0.0156;THETA=0.0011;AC=541;AN=2184 GT:DS:GL:BD 0.24771062 0 1 144578127 . TG T 12787 PASS INDEL;BAVGPOST=0.836;BRSQ=0.566;LDAF=0.1982;AVGPOST=0.9390;RSQ=0.8625;ERATE=0.0012;THETA=0.0073;AC=405;AN=2184 GT:DS:GL:BD 0.18543956 0 1 144578303 . TA T 162 PASS INDEL;BAVGPOST=0.480;BRSQ=0.015;LDAF=0.3133;AVGPOST=0.6603;RSQ=0.3162;ERATE=0.0171;THETA=0.0074;AC=484;AN=2184 GT:DS:GL:BD 0.22161172 0 1 144578854 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.917;BRSQ=0.937;LDAF=0.8787;AVGPOST=0.9725;RSQ=0.9272;ERATE=0.0008;THETA=0.0011;AC=1930;AN=2184 GT:DS:GL:BD 0.88369966 1 1 144578902 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.421;LDAF=0.0186;AVGPOST=0.9782;RSQ=0.5336;ERATE=0.0014;THETA=0.0044;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 144578915 . C CT 5180 PASS INDEL;BAVGPOST=0.887;BRSQ=0.553;LDAF=0.1834;AVGPOST=0.8833;RSQ=0.6585;ERATE=0.0202;THETA=0.0017;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 144579896 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.816;LDAF=0.0263;AVGPOST=0.9966;RSQ=0.9461;ERATE=0.0005;THETA=0.0030;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 144579934 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.765;BRSQ=0.647;LDAF=0.5493;AVGPOST=0.9089;RSQ=0.8754;ERATE=0.0012;THETA=0.0094;AC=1206;AN=2184 GT:DS:GL:BD 0.55219781 1 1 144580376 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.837;LDAF=0.0075;AVGPOST=0.9943;RSQ=0.6693;ERATE=0.0008;THETA=0.0112;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 144580548 . TC T 294 PASS INDEL;BAVGPOST=0.769;BRSQ=0.056;LDAF=0.1912;AVGPOST=0.7028;RSQ=0.2062;ERATE=0.0174;THETA=0.0075;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 144580669 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0069;AVGPOST=0.9988;RSQ=0.9236;ERATE=0.0004;THETA=0.0035;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 144581144 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.831;BRSQ=0.694;LDAF=0.8032;AVGPOST=0.8803;RSQ=0.7780;ERATE=0.0058;THETA=0.0102;AC=1809;AN=2184 GT:DS:GL:BD 0.82829672 1 1 144582304 . TC T 5579 PASS INDEL;BAVGPOST=0.704;BRSQ=0.253;LDAF=0.2721;AVGPOST=0.7135;RSQ=0.3763;ERATE=0.0236;THETA=0.0037;AC=349;AN=2184 GT:DS:GL:BD 0.15979853 0 1 144582305 . C CG 79 PASS INDEL;BAVGPOST=0.863;BRSQ=0.109;LDAF=0.1302;AVGPOST=0.8032;RSQ=0.2797;ERATE=0.0074;THETA=0.0145;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 144582306 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.681;BRSQ=0.376;LDAF=0.3778;AVGPOST=0.7412;RSQ=0.5063;ERATE=0.0336;THETA=0.0067;AC=667;AN=2184 GT:DS:GL:BD 0.30540293 0 1 144582917 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0069;AVGPOST=0.9993;RSQ=0.9560;ERATE=0.0003;THETA=0.0117;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 144583167 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.690;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8461;ERATE=0.0004;THETA=0.0069;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144584525 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.793;BRSQ=0.052;LDAF=0.1687;AVGPOST=0.7380;RSQ=0.2508;ERATE=0.0077;THETA=0.0061;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 144585181 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.664;LDAF=0.0274;AVGPOST=0.9930;RSQ=0.8925;ERATE=0.0006;THETA=0.0061;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 144585597 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.862;LDAF=0.0507;AVGPOST=0.9865;RSQ=0.8920;ERATE=0.0031;THETA=0.0090;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 144586145 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.808;LDAF=0.0323;AVGPOST=0.9852;RSQ=0.8209;ERATE=0.0004;THETA=0.0045;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 144586148 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.779;LDAF=0.0267;AVGPOST=0.9862;RSQ=0.7987;ERATE=0.0005;THETA=0.0169;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 144586314 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.540;LDAF=0.0277;AVGPOST=0.9745;RSQ=0.6624;ERATE=0.0011;THETA=0.0089;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 144586349 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.910;BRSQ=0.943;LDAF=0.8802;AVGPOST=0.9758;RSQ=0.9412;ERATE=0.0006;THETA=0.0041;AC=1930;AN=2184 GT:DS:GL:BD 0.88369966 1 1 144586490 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.548;BRSQ=0.139;LDAF=0.3465;AVGPOST=0.6331;RSQ=0.3390;ERATE=0.0146;THETA=0.0040;AC=532;AN=2184 GT:DS:GL:BD 0.24358974 0 1 144586497 rs67996929 T TC 1058 PASS INDEL;BAVGPOST=0.465;BRSQ=0.148;LDAF=0.4088;AVGPOST=0.6155;RSQ=0.3630;ERATE=0.0104;THETA=0.0065;AC=833;AN=2184 GT:DS:GL:BD 0.38141027 0 1 144586649 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.861;BRSQ=0.722;LDAF=0.7783;AVGPOST=0.8875;RSQ=0.7610;ERATE=0.0102;THETA=0.0171;AC=1766;AN=2184 GT:DS:GL:BD 0.80860806 1 1 144586718 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.803;LDAF=0.0042;AVGPOST=0.9987;RSQ=0.8575;ERATE=0.0006;THETA=0.0033;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 144587988 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.586;LDAF=0.0077;AVGPOST=0.9933;RSQ=0.6313;ERATE=0.0011;THETA=0.0122;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 144588283 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.946;BRSQ=0.585;LDAF=0.0664;AVGPOST=0.9580;RSQ=0.7437;ERATE=0.0012;THETA=0.0082;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 144588293 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.596;LDAF=0.0102;AVGPOST=0.9952;RSQ=0.7964;ERATE=0.0005;THETA=0.0057;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 144588313 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.595;LDAF=0.0145;AVGPOST=0.9864;RSQ=0.6146;ERATE=0.0014;THETA=0.0217;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 144588332 rs67917230 AG A 14085 PASS INDEL;BAVGPOST=0.882;BRSQ=0.820;LDAF=0.8408;AVGPOST=0.9119;RSQ=0.8094;ERATE=0.0090;THETA=0.0171;AC=1887;AN=2184 GT:DS:GL:BD 0.86401099 1 1 144588598 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.683;LDAF=0.0105;AVGPOST=0.9968;RSQ=0.8641;ERATE=0.0007;THETA=0.0192;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 144588656 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.763;LDAF=0.0231;AVGPOST=0.9930;RSQ=0.8819;ERATE=0.0007;THETA=0.0108;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 144588823 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.743;LDAF=0.0174;AVGPOST=0.9965;RSQ=0.9225;ERATE=0.0004;THETA=0.0123;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 144588836 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.616;LDAF=0.0165;AVGPOST=0.9869;RSQ=0.7146;ERATE=0.0009;THETA=0.0024;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 144588908 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5195;ERATE=0.0004;THETA=0.0079;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144588958 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.888;BRSQ=0.850;LDAF=0.8373;AVGPOST=0.9105;RSQ=0.8080;ERATE=0.0066;THETA=0.0104;AC=1888;AN=2184 GT:DS:GL:BD 0.86446887 1 1 144589248 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4774;ERATE=0.0004;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144589252 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0027;AVGPOST=0.9982;RSQ=0.7588;ERATE=0.0004;THETA=0.0080;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144589399 . CT C 6743 PASS INDEL;BAVGPOST=0.518;BRSQ=0.244;LDAF=0.6474;AVGPOST=0.6840;RSQ=0.4922;ERATE=0.0230;THETA=0.0192;AC=1595;AN=2184 GT:DS:GL:BD 0.73031133 1 1 144589596 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.772;BRSQ=0.614;LDAF=0.7749;AVGPOST=0.8515;RSQ=0.7495;ERATE=0.0063;THETA=0.0211;AC=1804;AN=2184 GT:DS:GL:BD 0.82600731 1 1 144590331 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.843;LDAF=0.0021;AVGPOST=0.9988;RSQ=0.7788;ERATE=0.0004;THETA=0.0145;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144590361 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.864;LDAF=0.0945;AVGPOST=0.9836;RSQ=0.9241;ERATE=0.0011;THETA=0.0191;AC=202;AN=2184 GT:DS:GL:BD 0.09249084 0 1 144590643 rs72506223 GA G 32541 PASS INDEL;BAVGPOST=0.930;BRSQ=0.751;LDAF=0.3811;AVGPOST=0.9383;RSQ=0.8135;ERATE=0.0118;THETA=0.0120;AC=810;AN=2184 GT:DS:GL:BD 0.37087911 0 1 144590854 . T TA 171 PASS INDEL;BAVGPOST=0.987;BRSQ=0.519;LDAF=0.0215;AVGPOST=0.9739;RSQ=0.4963;ERATE=0.0027;THETA=0.0107;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 144590935 . A AT 43 PASS INDEL;BAVGPOST=0.999;BRSQ=0.458;LDAF=0.0035;AVGPOST=0.9942;RSQ=0.2895;ERATE=0.0007;THETA=0.0044;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144591019 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.641;BRSQ=0.375;LDAF=0.5057;AVGPOST=0.7090;RSQ=0.5711;ERATE=0.0153;THETA=0.0043;AC=1178;AN=2184 GT:DS:GL:BD 0.53937727 1 1 144591025 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.840;BRSQ=0.263;LDAF=0.1364;AVGPOST=0.8516;RSQ=0.4949;ERATE=0.0050;THETA=0.0104;AC=196;AN=2184 GT:DS:GL:BD 0.08974359 0 1 144591063 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.759;BRSQ=0.328;LDAF=0.3040;AVGPOST=0.7634;RSQ=0.4444;ERATE=0.0447;THETA=0.0047;AC=475;AN=2184 GT:DS:GL:BD 0.21749084 0 1 144591098 . C CA 6076 PASS INDEL;BAVGPOST=0.930;BRSQ=0.624;LDAF=0.1079;AVGPOST=0.9284;RSQ=0.6973;ERATE=0.0013;THETA=0.0112;AC=175;AN=2184 GT:DS:GL:BD 0.08012821 0 1 144591253 . C CA 826 PASS INDEL;BAVGPOST=0.690;BRSQ=0.181;LDAF=0.2546;AVGPOST=0.7059;RSQ=0.3087;ERATE=0.0263;THETA=0.0057;AC=281;AN=2184 GT:DS:GL:BD 0.12866300 0 1 144591446 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.776;BRSQ=0.608;LDAF=0.6233;AVGPOST=0.8009;RSQ=0.7038;ERATE=0.0066;THETA=0.0129;AC=1425;AN=2184 GT:DS:GL:BD 0.65247256 1 1 144591752 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.749;BRSQ=0.345;LDAF=0.4563;AVGPOST=0.8003;RSQ=0.4696;ERATE=0.0289;THETA=0.0186;AC=928;AN=2184 GT:DS:GL:BD 0.42490843 0 1 144591878 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.732;BRSQ=0.471;LDAF=0.4047;AVGPOST=0.7738;RSQ=0.5697;ERATE=0.0300;THETA=0.0070;AC=824;AN=2184 GT:DS:GL:BD 0.37728938 0 1 144591897 . AT A 251 PASS INDEL;BAVGPOST=0.987;BRSQ=0.451;LDAF=0.0239;AVGPOST=0.9677;RSQ=0.4449;ERATE=0.0017;THETA=0.0039;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 144592450 rs75305869 TA T 2585 PASS INDEL;BAVGPOST=0.563;BRSQ=0.155;LDAF=0.6292;AVGPOST=0.6683;RSQ=0.4306;ERATE=0.0141;THETA=0.0111;AC=1426;AN=2184 GT:DS:GL:BD 0.65293038 1 1 144593013 . A AAAT 26798 PASS INDEL;BAVGPOST=0.737;BRSQ=0.288;LDAF=0.3415;AVGPOST=0.7725;RSQ=0.4606;ERATE=0.0420;THETA=0.0042;AC=574;AN=2184 GT:DS:GL:BD 0.26282051 0 1 144593054 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.488;LDAF=0.0279;AVGPOST=0.9834;RSQ=0.7569;ERATE=0.0006;THETA=0.0088;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 144593107 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.846;BRSQ=0.244;LDAF=0.1452;AVGPOST=0.8131;RSQ=0.3975;ERATE=0.0106;THETA=0.0077;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 144593124 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.885;BRSQ=0.221;LDAF=0.0856;AVGPOST=0.8771;RSQ=0.4076;ERATE=0.0017;THETA=0.0090;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 144593125 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.883;BRSQ=0.219;LDAF=0.1016;AVGPOST=0.8557;RSQ=0.4135;ERATE=0.0014;THETA=0.0188;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 144593270 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.935;BRSQ=0.714;LDAF=0.1126;AVGPOST=0.9697;RSQ=0.8873;ERATE=0.0009;THETA=0.0119;AC=233;AN=2184 GT:DS:GL:BD 0.10668498 0 1 144593574 . GC G 266 PASS INDEL;BAVGPOST=0.980;BRSQ=0.267;LDAF=0.0264;AVGPOST=0.9609;RSQ=0.3754;ERATE=0.0011;THETA=0.0226;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 144593695 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.839;BRSQ=0.731;LDAF=0.5475;AVGPOST=0.8174;RSQ=0.7618;ERATE=0.0063;THETA=0.0090;AC=1218;AN=2184 GT:DS:GL:BD 0.55769229 1 1 144593760 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.727;BRSQ=0.339;LDAF=0.4295;AVGPOST=0.7855;RSQ=0.4450;ERATE=0.0083;THETA=0.0028;AC=869;AN=2184 GT:DS:GL:BD 0.39789379 0 1 144593781 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.734;BRSQ=0.315;LDAF=0.3412;AVGPOST=0.7847;RSQ=0.4783;ERATE=0.0032;THETA=0.0016;AC=686;AN=2184 GT:DS:GL:BD 0.31410256 0 1 144593792 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.827;BRSQ=0.367;LDAF=0.1721;AVGPOST=0.8298;RSQ=0.4903;ERATE=0.0048;THETA=0.0056;AC=258;AN=2184 GT:DS:GL:BD 0.11813187 0 1 144593801 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.721;BRSQ=0.334;LDAF=0.4198;AVGPOST=0.7991;RSQ=0.4808;ERATE=0.0023;THETA=0.0174;AC=839;AN=2184 GT:DS:GL:BD 0.38415751 0 1 144593874 . C CG 25273 PASS INDEL;BAVGPOST=0.717;BRSQ=0.284;LDAF=0.3955;AVGPOST=0.7926;RSQ=0.4672;ERATE=0.0210;THETA=0.0127;AC=765;AN=2184 GT:DS:GL:BD 0.35027471 0 1 144593903 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.375;LDAF=0.0103;AVGPOST=0.9822;RSQ=0.2763;ERATE=0.0016;THETA=0.0208;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144593948 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.888;LDAF=0.0440;AVGPOST=0.9840;RSQ=0.8375;ERATE=0.0008;THETA=0.0142;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 144593957 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.418;LDAF=0.0256;AVGPOST=0.9776;RSQ=0.6469;ERATE=0.0008;THETA=0.0095;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 144594019 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.642;BRSQ=0.160;LDAF=0.3211;AVGPOST=0.6728;RSQ=0.3089;ERATE=0.0440;THETA=0.0089;AC=407;AN=2184 GT:DS:GL:BD 0.18635531 0 1 144594068 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.836;BRSQ=0.733;LDAF=0.5530;AVGPOST=0.8150;RSQ=0.7405;ERATE=0.0089;THETA=0.0115;AC=1248;AN=2184 GT:DS:GL:BD 0.57142860 1 1 144594087 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.931;BRSQ=0.868;LDAF=0.6530;AVGPOST=0.8869;RSQ=0.8246;ERATE=0.0028;THETA=0.0156;AC=1426;AN=2184 GT:DS:GL:BD 0.65293038 1 1 144594260 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.504;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.3263;ERATE=0.0007;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144594355 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.962;LDAF=0.0404;AVGPOST=0.9965;RSQ=0.9607;ERATE=0.0005;THETA=0.0077;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 144594393 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.985;LDAF=0.0411;AVGPOST=0.9969;RSQ=0.9659;ERATE=0.0006;THETA=0.0080;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 144594407 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.806;LDAF=0.0040;AVGPOST=0.9975;RSQ=0.7127;ERATE=0.0009;THETA=0.0076;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 144594483 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.959;BRSQ=0.932;LDAF=0.6620;AVGPOST=0.9472;RSQ=0.9191;ERATE=0.0008;THETA=0.0062;AC=1438;AN=2184 GT:DS:GL:BD 0.65842491 1 1 144594569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.619;LDAF=0.0020;AVGPOST=0.9975;RSQ=0.5219;ERATE=0.0005;THETA=0.0054;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144594578 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5137;ERATE=0.0005;THETA=0.0037;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144594727 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6328;ERATE=0.0004;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144595410 . C CT 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.660;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4641;ERATE=0.0006;THETA=0.0103;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144595498 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.916;LDAF=0.1079;AVGPOST=0.9838;RSQ=0.9410;ERATE=0.0004;THETA=0.0036;AC=235;AN=2184 GT:DS:GL:BD 0.10760073 0 1 144595959 . AC A 117 PASS INDEL;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0008;AVGPOST=0.9986;RSQ=0.2488;ERATE=0.0004;THETA=0.0039;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 144596007 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.880;LDAF=0.0067;AVGPOST=0.9970;RSQ=0.8317;ERATE=0.0004;THETA=0.0016;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 144596241 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.942;BRSQ=0.868;LDAF=0.6737;AVGPOST=0.9343;RSQ=0.8771;ERATE=0.0108;THETA=0.0032;AC=1476;AN=2184 GT:DS:GL:BD 0.67582417 1 1 144596279 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.652;LDAF=0.0019;AVGPOST=0.9972;RSQ=0.3340;ERATE=0.0005;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144596289 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.954;BRSQ=0.636;LDAF=0.0840;AVGPOST=0.9327;RSQ=0.6276;ERATE=0.0135;THETA=0.0087;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 144597025 . CT C 46 PASS INDEL;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0014;AVGPOST=0.9994;RSQ=0.8233;ERATE=0.0004;THETA=0.0097;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144598179 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.943;BRSQ=0.798;LDAF=0.8807;AVGPOST=0.9432;RSQ=0.8291;ERATE=0.0012;THETA=0.0076;AC=1940;AN=2184 GT:DS:GL:BD 0.88827837 1 1 144599126 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.957;BRSQ=0.898;LDAF=0.2325;AVGPOST=0.9577;RSQ=0.9160;ERATE=0.0008;THETA=0.0006;AC=507;AN=2184 GT:DS:GL:BD 0.23214285 0 1 144599186 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.838;BRSQ=0.435;LDAF=0.2396;AVGPOST=0.8054;RSQ=0.4745;ERATE=0.0425;THETA=0.0009;AC=364;AN=2184 GT:DS:GL:BD 0.16666667 0 1 144599452 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0029;AVGPOST=0.9978;RSQ=0.6717;ERATE=0.0006;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144599639 . T TC 611 PASS INDEL;BAVGPOST=0.950;BRSQ=0.318;LDAF=0.0823;AVGPOST=0.8792;RSQ=0.3381;ERATE=0.0089;THETA=0.0040;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 144600020 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144600044 . T TC 25 PASS INDEL;BAVGPOST=0.999;BRSQ=0.649;LDAF=0.0017;AVGPOST=0.9977;RSQ=0.4507;ERATE=0.0006;THETA=0.0066;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144600145 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.947;BRSQ=0.928;LDAF=0.5580;AVGPOST=0.9281;RSQ=0.9050;ERATE=0.0085;THETA=0.0011;AC=1237;AN=2184 GT:DS:GL:BD 0.56639194 1 1 144600160 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.791;LDAF=0.0521;AVGPOST=0.9722;RSQ=0.7745;ERATE=0.0029;THETA=0.0024;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 144600865 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.957;LDAF=0.1212;AVGPOST=0.9919;RSQ=0.9751;ERATE=0.0005;THETA=0.0078;AC=263;AN=2184 GT:DS:GL:BD 0.12042125 0 1 144601142 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.389;LDAF=0.9855;AVGPOST=0.9868;RSQ=0.6738;ERATE=0.0006;THETA=0.0024;AC=2161;AN=2184 GT:DS:GL:BD 0.98946887 1 1 144601318 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7548;ERATE=0.0003;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144601346 . CT C 3952 PASS INDEL;BAVGPOST=0.992;BRSQ=0.878;LDAF=0.0310;AVGPOST=0.9952;RSQ=0.9395;ERATE=0.0005;THETA=0.0008;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 144601517 rs4067418 CGTT C 27856 PASS INDEL;BAVGPOST=0.840;BRSQ=0.655;LDAF=0.3715;AVGPOST=0.8487;RSQ=0.6889;ERATE=0.0231;THETA=0.0009;AC=800;AN=2184 GT:DS:GL:BD 0.36630037 0 1 144601682 . GA G 140 PASS INDEL;BAVGPOST=0.990;BRSQ=0.666;LDAF=0.0158;AVGPOST=0.9885;RSQ=0.7231;ERATE=0.0007;THETA=0.0046;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 144601899 . CTT C 521 PASS INDEL;BAVGPOST=0.989;BRSQ=0.627;LDAF=0.0248;AVGPOST=0.9728;RSQ=0.5424;ERATE=0.0051;THETA=0.0008;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 144601986 . A AT 238 PASS INDEL;BAVGPOST=0.985;BRSQ=0.702;LDAF=0.0266;AVGPOST=0.9801;RSQ=0.7174;ERATE=0.0005;THETA=0.0037;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 144602778 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.913;LDAF=0.2265;AVGPOST=0.9701;RSQ=0.9406;ERATE=0.0010;THETA=0.0010;AC=498;AN=2184 GT:DS:GL:BD 0.22802198 0 1 144603199 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.511;LDAF=0.0165;AVGPOST=0.9826;RSQ=0.6244;ERATE=0.0007;THETA=0.0011;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 144603830 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.646;LDAF=0.0289;AVGPOST=0.9766;RSQ=0.6688;ERATE=0.0014;THETA=0.0033;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 144603956 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.913;LDAF=0.0235;AVGPOST=0.9966;RSQ=0.9441;ERATE=0.0004;THETA=0.0070;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 144604144 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.987;LDAF=0.1981;AVGPOST=0.9952;RSQ=0.9893;ERATE=0.0004;THETA=0.0005;AC=430;AN=2184 GT:DS:GL:BD 0.19688645 0 1 144604153 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.975;LDAF=0.2682;AVGPOST=0.9899;RSQ=0.9825;ERATE=0.0005;THETA=0.0031;AC=586;AN=2184 GT:DS:GL:BD 0.26831502 0 1 144604169 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.644;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4828;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144604202 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.990;LDAF=0.3378;AVGPOST=0.9914;RSQ=0.9882;ERATE=0.0005;THETA=0.0009;AC=737;AN=2184 GT:DS:GL:BD 0.33745420 0 1 144604234 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6288;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144604556 . A AT 600 PASS INDEL;BAVGPOST=0.943;BRSQ=0.204;LDAF=0.0866;AVGPOST=0.8662;RSQ=0.3256;ERATE=0.0037;THETA=0.0014;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 144604913 . T TCCTTA 1759 PASS INDEL;BAVGPOST=0.976;BRSQ=0.317;LDAF=0.0332;AVGPOST=0.9478;RSQ=0.3498;ERATE=0.0025;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 144605469 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.790;LDAF=0.0812;AVGPOST=0.9666;RSQ=0.8436;ERATE=0.0009;THETA=0.0014;AC=163;AN=2184 GT:DS:GL:BD 0.07463370 0 1 144606681 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.673;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.3870;ERATE=0.0007;THETA=0.0046;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144606704 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.575;LDAF=0.0014;AVGPOST=0.9979;RSQ=0.4501;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144606788 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.909;LDAF=0.0723;AVGPOST=0.9835;RSQ=0.9010;ERATE=0.0012;THETA=0.0010;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 144606920 . T TA 38 PASS INDEL;BAVGPOST=0.998;BRSQ=0.588;LDAF=0.0115;AVGPOST=0.9845;RSQ=0.4701;ERATE=0.0013;THETA=0.0011;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 144606978 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.747;LDAF=0.0330;AVGPOST=0.9778;RSQ=0.7325;ERATE=0.0017;THETA=0.0032;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 144606993 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.959;LDAF=0.0372;AVGPOST=0.9971;RSQ=0.9693;ERATE=0.0004;THETA=0.0009;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 144607323 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.609;LDAF=0.0037;AVGPOST=0.9966;RSQ=0.5996;ERATE=0.0007;THETA=0.0025;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 144607353 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.787;LDAF=0.0037;AVGPOST=0.9968;RSQ=0.6499;ERATE=0.0006;THETA=0.0026;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 144607370 . CTT C 139 PASS INDEL;BAVGPOST=0.999;BRSQ=0.779;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6668;ERATE=0.0006;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144607401 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.957;LDAF=0.5721;AVGPOST=0.9572;RSQ=0.9466;ERATE=0.0058;THETA=0.0016;AC=1266;AN=2184 GT:DS:GL:BD 0.57967031 1 1 144607417 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.937;LDAF=0.3188;AVGPOST=0.9641;RSQ=0.9475;ERATE=0.0009;THETA=0.0014;AC=709;AN=2184 GT:DS:GL:BD 0.32463369 0 1 144607430 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.954;BRSQ=0.872;LDAF=0.2152;AVGPOST=0.9655;RSQ=0.9250;ERATE=0.0015;THETA=0.0021;AC=476;AN=2184 GT:DS:GL:BD 0.21794872 0 1 144609415 rs60084667 C CA 507 PASS INDEL;BAVGPOST=0.665;BRSQ=0.141;LDAF=0.2978;AVGPOST=0.6637;RSQ=0.2706;ERATE=0.0370;THETA=0.0054;AC=392;AN=2184 GT:DS:GL:BD 0.17948718 0 1 144609517 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.965;LDAF=0.6345;AVGPOST=0.9480;RSQ=0.9273;ERATE=0.0045;THETA=0.0028;AC=1403;AN=2184 GT:DS:GL:BD 0.64239925 1 1 144609856 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.750;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.3450;ERATE=0.0007;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144609890 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5771;ERATE=0.0005;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144609903 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.532;LDAF=0.0442;AVGPOST=0.9585;RSQ=0.6222;ERATE=0.0083;THETA=0.0046;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 144609934 . G GTA 3138 PASS INDEL;BAVGPOST=0.838;BRSQ=0.466;LDAF=0.2192;AVGPOST=0.8103;RSQ=0.5320;ERATE=0.0291;THETA=0.0008;AC=331;AN=2184 GT:DS:GL:BD 0.15155677 0 1 144610433 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.322;LDAF=0.0060;AVGPOST=0.9916;RSQ=0.4241;ERATE=0.0015;THETA=0.0032;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 144610441 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.685;LDAF=0.0044;AVGPOST=0.9952;RSQ=0.5266;ERATE=0.0007;THETA=0.0027;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 144610740 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.703;LDAF=0.0017;AVGPOST=0.9981;RSQ=0.4851;ERATE=0.0006;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144610985 rs55648416 C CT 313 PASS INDEL;BAVGPOST=0.791;BRSQ=0.222;LDAF=0.1888;AVGPOST=0.7593;RSQ=0.3339;ERATE=0.0175;THETA=0.0014;AC=206;AN=2184 GT:DS:GL:BD 0.09432235 0 1 144611726 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144611756 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144611761 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.811;LDAF=0.0109;AVGPOST=0.9959;RSQ=0.8660;ERATE=0.0004;THETA=0.0025;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 144611853 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.617;LDAF=0.0309;AVGPOST=0.9735;RSQ=0.6670;ERATE=0.0011;THETA=0.0010;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 144611887 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.974;LDAF=0.0611;AVGPOST=0.9930;RSQ=0.9505;ERATE=0.0005;THETA=0.0039;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 144611900 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.633;LDAF=0.0026;AVGPOST=0.9969;RSQ=0.5328;ERATE=0.0006;THETA=0.0025;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144612156 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144612613 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.976;LDAF=0.6485;AVGPOST=0.9670;RSQ=0.9535;ERATE=0.0019;THETA=0.0036;AC=1429;AN=2184 GT:DS:GL:BD 0.65430403 1 1 144612737 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.816;BRSQ=0.274;LDAF=0.2119;AVGPOST=0.7494;RSQ=0.3387;ERATE=0.0288;THETA=0.0053;AC=240;AN=2184 GT:DS:GL:BD 0.10989011 0 1 144612839 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.509;LDAF=0.0262;AVGPOST=0.9825;RSQ=0.7263;ERATE=0.0012;THETA=0.0011;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 144612869 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.538;LDAF=0.0179;AVGPOST=0.9823;RSQ=0.5800;ERATE=0.0022;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 144612899 rs61573824 T TTA 4056 PASS INDEL;BAVGPOST=0.952;BRSQ=0.705;LDAF=0.0819;AVGPOST=0.9715;RSQ=0.8551;ERATE=0.0006;THETA=0.0024;AC=176;AN=2184 GT:DS:GL:BD 0.08058608 0 1 144612926 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.525;LDAF=0.0112;AVGPOST=0.9883;RSQ=0.5574;ERATE=0.0006;THETA=0.0015;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 144612927 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.832;LDAF=0.0197;AVGPOST=0.9883;RSQ=0.7613;ERATE=0.0013;THETA=0.0031;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 144612970 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.717;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4196;ERATE=0.0005;THETA=0.0047;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144612989 . A ATG 36425 PASS INDEL;BAVGPOST=0.710;BRSQ=0.293;LDAF=0.4509;AVGPOST=0.7738;RSQ=0.3913;ERATE=0.0652;THETA=0.0012;AC=882;AN=2184 GT:DS:GL:BD 0.40384614 0 1 144613065 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.912;BRSQ=0.790;LDAF=0.2410;AVGPOST=0.9356;RSQ=0.8810;ERATE=0.0010;THETA=0.0032;AC=535;AN=2184 GT:DS:GL:BD 0.24496336 0 1 144613083 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.822;LDAF=0.0642;AVGPOST=0.9899;RSQ=0.9331;ERATE=0.0008;THETA=0.0032;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 144613183 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.931;LDAF=0.0187;AVGPOST=0.9929;RSQ=0.8432;ERATE=0.0007;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 144614149 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.888;LDAF=0.0713;AVGPOST=0.9834;RSQ=0.9076;ERATE=0.0006;THETA=0.0016;AC=151;AN=2184 GT:DS:GL:BD 0.06913920 0 1 144614177 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.817;LDAF=0.0155;AVGPOST=0.9909;RSQ=0.7331;ERATE=0.0013;THETA=0.0044;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 144614327 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.910;LDAF=0.0379;AVGPOST=0.9928;RSQ=0.9301;ERATE=0.0004;THETA=0.0049;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 144614457 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.716;LDAF=0.0150;AVGPOST=0.9882;RSQ=0.7034;ERATE=0.0004;THETA=0.0057;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 144614481 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.899;BRSQ=0.757;LDAF=0.4222;AVGPOST=0.9097;RSQ=0.8103;ERATE=0.0075;THETA=0.0009;AC=917;AN=2184 GT:DS:GL:BD 0.41987181 0 1 144614921 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.614;LDAF=0.0234;AVGPOST=0.9801;RSQ=0.6744;ERATE=0.0019;THETA=0.0069;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 144615246 rs10625215 A AAG 2607 PASS INDEL;BAVGPOST=0.796;BRSQ=0.534;LDAF=0.2300;AVGPOST=0.8721;RSQ=0.7588;ERATE=0.0012;THETA=0.0044;AC=475;AN=2184 GT:DS:GL:BD 0.21749084 0 1 144615250 . G GAA 5320 PASS INDEL;BAVGPOST=0.795;BRSQ=0.540;LDAF=0.2130;AVGPOST=0.8789;RSQ=0.7544;ERATE=0.0010;THETA=0.0010;AC=441;AN=2184 GT:DS:GL:BD 0.20192307 0 1 144615283 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.958;LDAF=0.0263;AVGPOST=0.9970;RSQ=0.9495;ERATE=0.0005;THETA=0.0032;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 144616125 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.955;BRSQ=0.906;LDAF=0.3052;AVGPOST=0.9520;RSQ=0.9151;ERATE=0.0059;THETA=0.0014;AC=667;AN=2184 GT:DS:GL:BD 0.30540293 0 1 144616139 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7563;ERATE=0.0004;THETA=0.0028;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144616200 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.512;LDAF=0.0232;AVGPOST=0.9826;RSQ=0.7130;ERATE=0.0008;THETA=0.0017;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 144616674 . T TA 212 PASS INDEL;BAVGPOST=0.964;BRSQ=0.226;LDAF=0.0398;AVGPOST=0.9432;RSQ=0.3956;ERATE=0.0041;THETA=0.0055;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 144616775 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.3813;ERATE=0.0005;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144616860 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.677;BRSQ=0.395;LDAF=0.3240;AVGPOST=0.7681;RSQ=0.6279;ERATE=0.0112;THETA=0.0048;AC=676;AN=2184 GT:DS:GL:BD 0.30952382 0 1 144616921 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.785;LDAF=0.0580;AVGPOST=0.9813;RSQ=0.8682;ERATE=0.0008;THETA=0.0013;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 144617119 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.803;BRSQ=0.704;LDAF=0.4013;AVGPOST=0.8240;RSQ=0.7672;ERATE=0.0340;THETA=0.0025;AC=896;AN=2184 GT:DS:GL:BD 0.41025642 0 1 144617179 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0637;AVGPOST=0.9966;RSQ=0.9796;ERATE=0.0004;THETA=0.0047;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 144617198 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0022;AVGPOST=0.9973;RSQ=0.5584;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144617208 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7616;ERATE=0.0009;THETA=0.0071;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144617251 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.967;LDAF=0.3193;AVGPOST=0.9696;RSQ=0.9551;ERATE=0.0006;THETA=0.0067;AC=704;AN=2184 GT:DS:GL:BD 0.32234433 0 1 144617263 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0170;AVGPOST=0.9984;RSQ=0.9657;ERATE=0.0004;THETA=0.0037;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 144617270 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.813;LDAF=0.0230;AVGPOST=0.9864;RSQ=0.7607;ERATE=0.0034;THETA=0.0014;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 144617319 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.959;LDAF=0.0279;AVGPOST=0.9958;RSQ=0.9402;ERATE=0.0007;THETA=0.0021;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 144617381 . GAC G 653 PASS INDEL;BAVGPOST=0.988;BRSQ=0.533;LDAF=0.0162;AVGPOST=0.9817;RSQ=0.5099;ERATE=0.0019;THETA=0.0030;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 144617650 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9990;RSQ=0.3734;ERATE=0.0004;THETA=0.0048;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 144617766 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5168;ERATE=0.0004;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144617773 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.954;BRSQ=0.938;LDAF=0.5687;AVGPOST=0.9653;RSQ=0.9594;ERATE=0.0013;THETA=0.0016;AC=1251;AN=2184 GT:DS:GL:BD 0.57280219 1 1 144617805 rs72300460 C CTT 285 PASS INDEL;BAVGPOST=0.990;BRSQ=0.698;LDAF=0.0216;AVGPOST=0.9807;RSQ=0.6408;ERATE=0.0061;THETA=0.0022;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 144617813 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.980;LDAF=0.5888;AVGPOST=0.9746;RSQ=0.9682;ERATE=0.0047;THETA=0.0072;AC=1291;AN=2184 GT:DS:GL:BD 0.59111720 1 1 144617849 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.552;LDAF=0.0322;AVGPOST=0.9683;RSQ=0.6177;ERATE=0.0056;THETA=0.0052;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 144618027 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.729;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5966;ERATE=0.0006;THETA=0.0020;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144618031 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.956;LDAF=0.0645;AVGPOST=0.9900;RSQ=0.9372;ERATE=0.0013;THETA=0.0146;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 144618201 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.897;BRSQ=0.589;LDAF=0.1942;AVGPOST=0.8615;RSQ=0.6058;ERATE=0.0431;THETA=0.0198;AC=309;AN=2184 GT:DS:GL:BD 0.14148352 0 1 144618354 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.908;BRSQ=0.864;LDAF=0.5222;AVGPOST=0.8709;RSQ=0.8332;ERATE=0.0255;THETA=0.0013;AC=1178;AN=2184 GT:DS:GL:BD 0.53937727 1 1 144618464 rs35428490 T TG 1572 PASS INDEL;BAVGPOST=0.969;BRSQ=0.745;LDAF=0.0780;AVGPOST=0.9533;RSQ=0.7197;ERATE=0.0230;THETA=0.0051;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 144619344 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.711;LDAF=0.0702;AVGPOST=0.9660;RSQ=0.7935;ERATE=0.0094;THETA=0.0041;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 144619399 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.859;LDAF=0.0288;AVGPOST=0.9889;RSQ=0.8444;ERATE=0.0072;THETA=0.0093;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 144619449 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.6199;ERATE=0.0006;THETA=0.0043;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144619483 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.937;LDAF=0.6059;AVGPOST=0.9543;RSQ=0.9327;ERATE=0.0066;THETA=0.0121;AC=1329;AN=2184 GT:DS:GL:BD 0.60851645 1 1 144620440 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.715;LDAF=0.0048;AVGPOST=0.9979;RSQ=0.8007;ERATE=0.0005;THETA=0.0044;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 144620567 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.951;LDAF=0.0183;AVGPOST=0.9922;RSQ=0.8260;ERATE=0.0007;THETA=0.0109;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 144620694 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.902;BRSQ=0.852;LDAF=0.5725;AVGPOST=0.8661;RSQ=0.8250;ERATE=0.0090;THETA=0.0140;AC=1296;AN=2184 GT:DS:GL:BD 0.59340662 1 1 144620819 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.474;LDAF=0.0041;AVGPOST=0.9951;RSQ=0.5407;ERATE=0.0006;THETA=0.0029;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144620878 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.923;BRSQ=0.313;LDAF=0.9562;AVGPOST=0.9491;RSQ=0.5497;ERATE=0.0013;THETA=0.0191;AC=2123;AN=2184 GT:DS:GL:BD 0.97206962 1 1 144621108 . CA C 794 PASS INDEL;BAVGPOST=0.985;BRSQ=0.713;LDAF=0.0225;AVGPOST=0.9867;RSQ=0.7747;ERATE=0.0011;THETA=0.0306;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 144621250 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.572;LDAF=0.0104;AVGPOST=0.9908;RSQ=0.6664;ERATE=0.0011;THETA=0.0184;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 144621275 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.533;LDAF=0.0024;AVGPOST=0.9969;RSQ=0.4815;ERATE=0.0011;THETA=0.0151;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144621646 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9319;ERATE=0.0011;THETA=0.0100;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144621682 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0113;AVGPOST=0.9993;RSQ=0.9719;ERATE=0.0004;THETA=0.0114;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 144621859 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5328;ERATE=0.0004;THETA=0.0132;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144622110 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5838;ERATE=0.0004;THETA=0.0079;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144622133 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.775;LDAF=0.9952;AVGPOST=0.9976;RSQ=0.7751;ERATE=0.0005;THETA=0.0220;AC=2175;AN=2184 GT:DS:GL:BD 0.99587911 1 1 144622164 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.968;LDAF=0.0259;AVGPOST=0.9905;RSQ=0.8549;ERATE=0.0006;THETA=0.0342;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 144672446 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.231;LDAF=0.0090;AVGPOST=0.9850;RSQ=0.3024;ERATE=0.0008;THETA=0.0073;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 144672447 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.096;LDAF=0.0184;AVGPOST=0.9697;RSQ=0.2864;ERATE=0.0018;THETA=0.0038;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 144673695 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.900;BRSQ=0.700;LDAF=0.2543;AVGPOST=0.8744;RSQ=0.7105;ERATE=0.0127;THETA=0.0267;AC=493;AN=2184 GT:DS:GL:BD 0.22573259 0 1 144673781 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.6331;ERATE=0.0004;THETA=0.0241;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144673808 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.933;LDAF=0.1149;AVGPOST=0.9830;RSQ=0.9340;ERATE=0.0008;THETA=0.0037;AC=246;AN=2184 GT:DS:GL:BD 0.11263736 0 1 144673841 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.896;LDAF=0.0945;AVGPOST=0.9764;RSQ=0.8896;ERATE=0.0022;THETA=0.0152;AC=195;AN=2184 GT:DS:GL:BD 0.08928572 0 1 144673877 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.843;LDAF=0.0057;AVGPOST=0.9968;RSQ=0.7898;ERATE=0.0024;THETA=0.0024;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 144673901 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.908;LDAF=0.0929;AVGPOST=0.9812;RSQ=0.9105;ERATE=0.0024;THETA=0.0154;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 144673920 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144673948 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.690;LDAF=0.9280;AVGPOST=0.9525;RSQ=0.7320;ERATE=0.0018;THETA=0.0050;AC=2048;AN=2184 GT:DS:GL:BD 0.93772894 1 1 144673970 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.832;BRSQ=0.564;LDAF=0.4422;AVGPOST=0.8196;RSQ=0.6002;ERATE=0.0280;THETA=0.0063;AC=907;AN=2184 GT:DS:GL:BD 0.41529304 0 1 144674078 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.889;BRSQ=0.658;LDAF=0.2379;AVGPOST=0.8621;RSQ=0.6558;ERATE=0.0160;THETA=0.0048;AC=443;AN=2184 GT:DS:GL:BD 0.20283882 0 1 144674137 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.837;BRSQ=0.597;LDAF=0.3997;AVGPOST=0.8344;RSQ=0.6543;ERATE=0.0227;THETA=0.0139;AC=842;AN=2184 GT:DS:GL:BD 0.38553113 0 1 144674383 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.849;BRSQ=0.628;LDAF=0.4506;AVGPOST=0.8606;RSQ=0.7075;ERATE=0.0040;THETA=0.0012;AC=969;AN=2184 GT:DS:GL:BD 0.44368133 0 1 144674391 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.848;BRSQ=0.628;LDAF=0.4525;AVGPOST=0.8655;RSQ=0.7216;ERATE=0.0012;THETA=0.0033;AC=982;AN=2184 GT:DS:GL:BD 0.44963369 0 1 144674772 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.767;LDAF=0.0033;AVGPOST=0.9978;RSQ=0.7113;ERATE=0.0006;THETA=0.0082;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 144674900 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.749;LDAF=0.0250;AVGPOST=0.9911;RSQ=0.8638;ERATE=0.0006;THETA=0.0029;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 144675501 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.881;LDAF=0.0085;AVGPOST=0.9955;RSQ=0.7877;ERATE=0.0024;THETA=0.0121;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 144675559 rs78277937 TA T 23071 PASS INDEL;BAVGPOST=0.991;BRSQ=0.956;LDAF=0.1215;AVGPOST=0.9861;RSQ=0.9493;ERATE=0.0014;THETA=0.0200;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 144675785 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.878;BRSQ=0.739;LDAF=0.4491;AVGPOST=0.8997;RSQ=0.8189;ERATE=0.0122;THETA=0.0104;AC=965;AN=2184 GT:DS:GL:BD 0.44184983 0 1 144675827 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0121;AVGPOST=0.9983;RSQ=0.9362;ERATE=0.0004;THETA=0.0089;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 144676861 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.760;LDAF=0.0380;AVGPOST=0.9863;RSQ=0.8892;ERATE=0.0007;THETA=0.0012;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 144677920 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.893;LDAF=0.2146;AVGPOST=0.9639;RSQ=0.9202;ERATE=0.0009;THETA=0.0115;AC=460;AN=2184 GT:DS:GL:BD 0.21062271 0 1 144678395 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.830;LDAF=0.0064;AVGPOST=0.9975;RSQ=0.8615;ERATE=0.0005;THETA=0.0033;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 144678467 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9122;ERATE=0.0003;THETA=0.0025;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144678505 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.929;LDAF=0.0116;AVGPOST=0.9983;RSQ=0.9417;ERATE=0.0004;THETA=0.0069;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 144678516 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6693;ERATE=0.0008;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144678553 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.744;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.6859;ERATE=0.0004;THETA=0.0021;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144678554 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6725;ERATE=0.0007;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144678640 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.784;LDAF=0.0103;AVGPOST=0.9958;RSQ=0.8595;ERATE=0.0006;THETA=0.0049;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 144678669 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.642;LDAF=0.0030;AVGPOST=0.9950;RSQ=0.3268;ERATE=0.0006;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144678677 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.887;LDAF=0.0104;AVGPOST=0.9950;RSQ=0.8081;ERATE=0.0004;THETA=0.0115;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 144678687 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.593;LDAF=0.0026;AVGPOST=0.9963;RSQ=0.3457;ERATE=0.0007;THETA=0.0032;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144678738 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.827;BRSQ=0.582;LDAF=0.3892;AVGPOST=0.8212;RSQ=0.6309;ERATE=0.0103;THETA=0.0018;AC=825;AN=2184 GT:DS:GL:BD 0.37774727 0 1 144678769 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.845;BRSQ=0.540;LDAF=0.4184;AVGPOST=0.8363;RSQ=0.5652;ERATE=0.0294;THETA=0.0113;AC=873;AN=2184 GT:DS:GL:BD 0.39972529 0 1 144678797 rs113649216 A AT 9942 PASS INDEL;BAVGPOST=0.802;BRSQ=0.484;LDAF=0.3821;AVGPOST=0.7870;RSQ=0.5172;ERATE=0.0310;THETA=0.0114;AC=759;AN=2184 GT:DS:GL:BD 0.34752747 0 1 144678851 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.796;LDAF=0.0969;AVGPOST=0.9551;RSQ=0.7911;ERATE=0.0017;THETA=0.0232;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 144678898 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.935;BRSQ=0.686;LDAF=0.1222;AVGPOST=0.9297;RSQ=0.7188;ERATE=0.0120;THETA=0.0058;AC=218;AN=2184 GT:DS:GL:BD 0.09981685 0 1 144679054 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.772;LDAF=0.0073;AVGPOST=0.9948;RSQ=0.7444;ERATE=0.0013;THETA=0.0026;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 144679066 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5441;ERATE=0.0004;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144679110 . CTTA C 77 PASS INDEL;BAVGPOST=0.999;BRSQ=0.495;LDAF=0.0033;AVGPOST=0.9943;RSQ=0.3184;ERATE=0.0005;THETA=0.0181;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144679159 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.670;LDAF=0.0051;AVGPOST=0.9962;RSQ=0.7089;ERATE=0.0015;THETA=0.0050;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 144679246 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.874;BRSQ=0.546;LDAF=0.1716;AVGPOST=0.8723;RSQ=0.6136;ERATE=0.0157;THETA=0.0043;AC=273;AN=2184 GT:DS:GL:BD 0.12500000 0 1 144679533 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0112;AVGPOST=0.9989;RSQ=0.9624;ERATE=0.0003;THETA=0.0021;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 144679945 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.886;LDAF=0.0130;AVGPOST=0.9966;RSQ=0.9010;ERATE=0.0030;THETA=0.0289;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 144680070 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.898;BRSQ=0.726;LDAF=0.8559;AVGPOST=0.8995;RSQ=0.7314;ERATE=0.0037;THETA=0.0021;AC=1924;AN=2184 GT:DS:GL:BD 0.88095236 1 1 144680311 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.849;BRSQ=0.722;LDAF=0.5729;AVGPOST=0.8635;RSQ=0.7730;ERATE=0.0075;THETA=0.0061;AC=1284;AN=2184 GT:DS:GL:BD 0.58791208 1 1 144680588 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.865;BRSQ=0.556;LDAF=0.1646;AVGPOST=0.8822;RSQ=0.6942;ERATE=0.0024;THETA=0.0073;AC=321;AN=2184 GT:DS:GL:BD 0.14697802 0 1 144680597 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.864;BRSQ=0.678;LDAF=0.8283;AVGPOST=0.8909;RSQ=0.7681;ERATE=0.0025;THETA=0.0089;AC=1860;AN=2184 GT:DS:GL:BD 0.85164833 1 1 144680697 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.788;LDAF=0.0627;AVGPOST=0.9808;RSQ=0.8655;ERATE=0.0010;THETA=0.0136;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 144681249 . CAA C 903 PASS INDEL;BAVGPOST=0.924;BRSQ=0.466;LDAF=0.0802;AVGPOST=0.9306;RSQ=0.6066;ERATE=0.0045;THETA=0.0094;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 144682096 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.913;BRSQ=0.779;LDAF=0.8801;AVGPOST=0.9389;RSQ=0.8134;ERATE=0.0007;THETA=0.0090;AC=1942;AN=2184 GT:DS:GL:BD 0.88919413 1 1 144682399 . T TA 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0056;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144682535 rs71222073 AC A 20395 PASS INDEL;BAVGPOST=0.874;BRSQ=0.631;LDAF=0.3339;AVGPOST=0.8753;RSQ=0.6839;ERATE=0.0151;THETA=0.0128;AC=670;AN=2184 GT:DS:GL:BD 0.30677655 0 1 144683501 . A AT 251 PASS INDEL;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0040;AVGPOST=0.9985;RSQ=0.8540;ERATE=0.0012;THETA=0.0106;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 144684726 . G GA 364 PASS INDEL;BAVGPOST=0.988;BRSQ=0.498;LDAF=0.0149;AVGPOST=0.9837;RSQ=0.5327;ERATE=0.0008;THETA=0.0059;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 144685565 . GCTA G 1108 PASS INDEL;BAVGPOST=0.995;BRSQ=0.832;LDAF=0.0139;AVGPOST=0.9931;RSQ=0.7818;ERATE=0.0043;THETA=0.0037;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 144685602 rs63642362 CG C 17165 PASS INDEL;BAVGPOST=0.769;BRSQ=0.483;LDAF=0.4044;AVGPOST=0.7819;RSQ=0.5472;ERATE=0.0187;THETA=0.0064;AC=835;AN=2184 GT:DS:GL:BD 0.38232601 0 1 144685605 . GA G 15189 PASS INDEL;BAVGPOST=0.976;BRSQ=0.312;LDAF=0.9693;AVGPOST=0.9528;RSQ=0.3262;ERATE=0.0041;THETA=0.0072;AC=2161;AN=2184 GT:DS:GL:BD 0.98946887 1 1 144685708 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.942;BRSQ=0.888;LDAF=0.6298;AVGPOST=0.9424;RSQ=0.9018;ERATE=0.0074;THETA=0.0098;AC=1380;AN=2184 GT:DS:GL:BD 0.63186812 1 1 144685753 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.921;LDAF=0.0469;AVGPOST=0.9915;RSQ=0.9307;ERATE=0.0008;THETA=0.0038;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 144686325 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.880;BRSQ=0.767;LDAF=0.5226;AVGPOST=0.8726;RSQ=0.7689;ERATE=0.0218;THETA=0.0077;AC=1155;AN=2184 GT:DS:GL:BD 0.52884614 1 1 144687527 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.799;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7276;ERATE=0.0004;THETA=0.0040;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144687551 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0004;THETA=0.0097;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144689753 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.830;BRSQ=0.619;LDAF=0.2880;AVGPOST=0.8468;RSQ=0.7097;ERATE=0.0297;THETA=0.0016;AC=571;AN=2184 GT:DS:GL:BD 0.26144689 0 1 144690679 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.865;LDAF=0.0044;AVGPOST=0.9978;RSQ=0.8013;ERATE=0.0004;THETA=0.0078;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 144690830 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0038;AVGPOST=0.9983;RSQ=0.8356;ERATE=0.0003;THETA=0.0100;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 144691034 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.896;BRSQ=0.789;LDAF=0.2828;AVGPOST=0.9022;RSQ=0.8316;ERATE=0.0113;THETA=0.0041;AC=586;AN=2184 GT:DS:GL:BD 0.26831502 0 1 144691071 rs76433345 A AC 453 PASS INDEL;BAVGPOST=0.997;BRSQ=0.859;LDAF=0.0080;AVGPOST=0.9957;RSQ=0.7871;ERATE=0.0006;THETA=0.0030;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 144691086 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.887;BRSQ=0.743;LDAF=0.2431;AVGPOST=0.8890;RSQ=0.8028;ERATE=0.0046;THETA=0.0048;AC=507;AN=2184 GT:DS:GL:BD 0.23214285 0 1 144691120 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.957;BRSQ=0.470;LDAF=0.0356;AVGPOST=0.9647;RSQ=0.6186;ERATE=0.0004;THETA=0.0047;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 144691121 . A AG 844 PASS INDEL;BAVGPOST=0.956;BRSQ=0.472;LDAF=0.0389;AVGPOST=0.9625;RSQ=0.6274;ERATE=0.0010;THETA=0.0062;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 144691122 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.830;LDAF=0.0085;AVGPOST=0.9955;RSQ=0.7668;ERATE=0.0010;THETA=0.0014;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 144691134 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.764;LDAF=0.0126;AVGPOST=0.9977;RSQ=0.9152;ERATE=0.0006;THETA=0.0070;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 144691143 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.945;LDAF=0.0612;AVGPOST=0.9916;RSQ=0.9398;ERATE=0.0008;THETA=0.0062;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 144691148 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.952;LDAF=0.0234;AVGPOST=0.9976;RSQ=0.9591;ERATE=0.0004;THETA=0.0077;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 144691165 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.880;LDAF=0.0059;AVGPOST=0.9972;RSQ=0.8062;ERATE=0.0004;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 144691168 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.920;LDAF=0.0965;AVGPOST=0.9863;RSQ=0.9381;ERATE=0.0006;THETA=0.0053;AC=203;AN=2184 GT:DS:GL:BD 0.09294872 0 1 144691187 . C CT 4800 PASS INDEL;BAVGPOST=0.963;BRSQ=0.904;LDAF=0.2064;AVGPOST=0.9670;RSQ=0.9248;ERATE=0.0006;THETA=0.0007;AC=447;AN=2184 GT:DS:GL:BD 0.20467032 0 1 144691189 . T TA 34971 PASS INDEL;BAVGPOST=0.971;BRSQ=0.930;LDAF=0.2106;AVGPOST=0.9704;RSQ=0.9334;ERATE=0.0009;THETA=0.0069;AC=453;AN=2184 GT:DS:GL:BD 0.20741758 0 1 144691225 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.938;BRSQ=0.825;LDAF=0.1758;AVGPOST=0.9614;RSQ=0.9070;ERATE=0.0006;THETA=0.0072;AC=376;AN=2184 GT:DS:GL:BD 0.17216118 0 1 144693036 . CTT C 176 PASS INDEL;BAVGPOST=0.990;BRSQ=0.148;LDAF=0.0573;AVGPOST=0.8962;RSQ=0.1952;ERATE=0.0043;THETA=0.0009;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 144693381 . C CT 681 PASS INDEL;BAVGPOST=0.982;BRSQ=0.463;LDAF=0.0472;AVGPOST=0.9289;RSQ=0.3454;ERATE=0.0052;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 144693979 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.923;BRSQ=0.836;LDAF=0.6963;AVGPOST=0.9222;RSQ=0.8465;ERATE=0.0061;THETA=0.0033;AC=1523;AN=2184 GT:DS:GL:BD 0.69734430 1 1 144694287 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.828;BRSQ=0.744;LDAF=0.4305;AVGPOST=0.8454;RSQ=0.8069;ERATE=0.0156;THETA=0.0043;AC=973;AN=2184 GT:DS:GL:BD 0.44551283 0 1 144694682 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.830;LDAF=0.0377;AVGPOST=0.9849;RSQ=0.8419;ERATE=0.0009;THETA=0.0039;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 144694712 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.943;LDAF=0.0181;AVGPOST=0.9963;RSQ=0.9230;ERATE=0.0008;THETA=0.0157;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 144699260 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0028;AVGPOST=0.9996;RSQ=0.9382;ERATE=0.0004;THETA=0.0032;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 144699428 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.954;BRSQ=0.873;LDAF=0.2638;AVGPOST=0.9571;RSQ=0.9082;ERATE=0.0018;THETA=0.0117;AC=561;AN=2184 GT:DS:GL:BD 0.25686812 0 1 144700377 . C CT 318 PASS INDEL;BAVGPOST=0.983;BRSQ=0.572;LDAF=0.0492;AVGPOST=0.9321;RSQ=0.3886;ERATE=0.0025;THETA=0.0126;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 144700879 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0274;AVGPOST=0.9978;RSQ=0.9692;ERATE=0.0003;THETA=0.0120;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 144700937 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.963;LDAF=0.0228;AVGPOST=0.9985;RSQ=0.9740;ERATE=0.0004;THETA=0.0075;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 144701099 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.807;LDAF=0.0152;AVGPOST=0.9913;RSQ=0.8062;ERATE=0.0004;THETA=0.0120;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 144701120 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.813;LDAF=0.0146;AVGPOST=0.9915;RSQ=0.8130;ERATE=0.0005;THETA=0.0093;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 144701300 . TGAG T 795 PASS INDEL;BAVGPOST=0.973;BRSQ=0.637;LDAF=0.0407;AVGPOST=0.9711;RSQ=0.7101;ERATE=0.0028;THETA=0.0140;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 144702173 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.948;LDAF=0.0216;AVGPOST=0.9969;RSQ=0.9483;ERATE=0.0004;THETA=0.0036;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 144702383 . CA C 415 PASS INDEL;BAVGPOST=0.988;BRSQ=0.783;LDAF=0.0221;AVGPOST=0.9883;RSQ=0.7962;ERATE=0.0009;THETA=0.0073;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 144702683 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0149;AVGPOST=0.9973;RSQ=0.9313;ERATE=0.0004;THETA=0.0105;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 144703869 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.855;BRSQ=0.510;LDAF=0.8315;AVGPOST=0.8199;RSQ=0.5028;ERATE=0.0096;THETA=0.0400;AC=1940;AN=2184 GT:DS:GL:BD 0.88827837 1 1 144704121 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5129;ERATE=0.0004;THETA=0.0257;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144704145 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0062;AVGPOST=0.9965;RSQ=0.7609;ERATE=0.0004;THETA=0.0132;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 144704163 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.903;BRSQ=0.703;LDAF=0.1910;AVGPOST=0.8899;RSQ=0.6994;ERATE=0.0018;THETA=0.0356;AC=337;AN=2184 GT:DS:GL:BD 0.15430403 0 1 144704532 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.636;LDAF=0.0030;AVGPOST=0.9978;RSQ=0.7342;ERATE=0.0004;THETA=0.0285;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 144704535 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.909;LDAF=0.0186;AVGPOST=0.9969;RSQ=0.9368;ERATE=0.0004;THETA=0.0329;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 144706416 . CAT C 34 PASS INDEL;BAVGPOST=0.982;BRSQ=0.453;LDAF=0.0302;AVGPOST=0.9567;RSQ=0.3617;ERATE=0.0061;THETA=0.0204;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 144707333 . ACT A 1814 PASS INDEL;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0047;AVGPOST=0.9995;RSQ=0.9505;ERATE=0.0004;THETA=0.0111;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 144709035 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6049;ERATE=0.0004;THETA=0.0252;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144709148 . TG T 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.735;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4567;ERATE=0.0005;THETA=0.0287;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144709458 . AG A 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0204;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144709518 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.898;LDAF=0.0127;AVGPOST=0.9973;RSQ=0.9192;ERATE=0.0004;THETA=0.0315;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 144709813 . TC T 985 PASS INDEL;BAVGPOST=0.994;BRSQ=0.739;LDAF=0.0123;AVGPOST=0.9920;RSQ=0.7221;ERATE=0.0007;THETA=0.0289;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 144810820 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.490;LDAF=0.0051;AVGPOST=0.9932;RSQ=0.3819;ERATE=0.0012;THETA=0.0449;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144810837 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.913;LDAF=0.1520;AVGPOST=0.9309;RSQ=0.8204;ERATE=0.0012;THETA=0.0302;AC=301;AN=2184 GT:DS:GL:BD 0.13782051 0 1 144810897 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.430;LDAF=0.0019;AVGPOST=0.9976;RSQ=0.4656;ERATE=0.0006;THETA=0.0329;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144811157 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.725;LDAF=0.0042;AVGPOST=0.9978;RSQ=0.7921;ERATE=0.0005;THETA=0.0222;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 144811189 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.931;LDAF=0.0344;AVGPOST=0.9906;RSQ=0.8903;ERATE=0.0007;THETA=0.0193;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 144811293 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.926;BRSQ=0.854;LDAF=0.3998;AVGPOST=0.9090;RSQ=0.8451;ERATE=0.0064;THETA=0.0036;AC=843;AN=2184 GT:DS:GL:BD 0.38598901 0 1 144811325 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.884;LDAF=0.1413;AVGPOST=0.9579;RSQ=0.8798;ERATE=0.0008;THETA=0.0077;AC=288;AN=2184 GT:DS:GL:BD 0.13186814 0 1 144811416 . GAAA G 859 PASS INDEL;BAVGPOST=0.977;BRSQ=0.721;LDAF=0.0448;AVGPOST=0.9741;RSQ=0.7447;ERATE=0.0012;THETA=0.0021;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 144811425 . TAAAA T 1429 PASS INDEL;BAVGPOST=0.977;BRSQ=0.737;LDAF=0.0485;AVGPOST=0.9708;RSQ=0.7283;ERATE=0.0028;THETA=0.0117;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 144811610 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.942;BRSQ=0.659;LDAF=0.0723;AVGPOST=0.9388;RSQ=0.6345;ERATE=0.0037;THETA=0.0132;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 144811615 . CAA C 165 PASS INDEL;BAVGPOST=0.999;BRSQ=0.625;LDAF=0.0021;AVGPOST=0.9968;RSQ=0.2826;ERATE=0.0008;THETA=0.0084;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144811823 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.899;BRSQ=0.493;LDAF=0.1114;AVGPOST=0.9065;RSQ=0.6060;ERATE=0.0014;THETA=0.0029;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 144811827 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.899;BRSQ=0.493;LDAF=0.1119;AVGPOST=0.9057;RSQ=0.5999;ERATE=0.0017;THETA=0.0078;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 144811836 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.771;BRSQ=0.557;LDAF=0.6712;AVGPOST=0.7620;RSQ=0.6105;ERATE=0.0139;THETA=0.0111;AC=1554;AN=2184 GT:DS:GL:BD 0.71153843 1 1 144811924 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.841;BRSQ=0.448;LDAF=0.8364;AVGPOST=0.8540;RSQ=0.5508;ERATE=0.0179;THETA=0.0110;AC=1900;AN=2184 GT:DS:GL:BD 0.86996335 1 1 144812758 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.953;LDAF=0.0307;AVGPOST=0.9941;RSQ=0.9286;ERATE=0.0004;THETA=0.0060;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 144812800 . AATG A 2147 PASS INDEL;BAVGPOST=0.941;BRSQ=0.691;LDAF=0.1097;AVGPOST=0.9323;RSQ=0.7039;ERATE=0.0140;THETA=0.0059;AC=189;AN=2184 GT:DS:GL:BD 0.08653846 0 1 144812856 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.836;LDAF=0.0049;AVGPOST=0.9981;RSQ=0.8571;ERATE=0.0005;THETA=0.0065;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 144812907 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0029;AVGPOST=0.9986;RSQ=0.7954;ERATE=0.0004;THETA=0.0079;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 144812950 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.947;BRSQ=0.669;LDAF=0.0488;AVGPOST=0.9703;RSQ=0.7536;ERATE=0.0006;THETA=0.0080;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 144813064 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7415;ERATE=0.0004;THETA=0.0079;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144813073 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5858;ERATE=0.0004;THETA=0.0083;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144813089 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7946;ERATE=0.0004;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144813162 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0064;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144813527 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.750;LDAF=0.0765;AVGPOST=0.9632;RSQ=0.8078;ERATE=0.0020;THETA=0.0073;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 144813529 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.936;BRSQ=0.844;LDAF=0.8525;AVGPOST=0.9260;RSQ=0.8068;ERATE=0.0016;THETA=0.0033;AC=1899;AN=2184 GT:DS:GL:BD 0.86950547 1 1 144813554 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.627;LDAF=0.0082;AVGPOST=0.9930;RSQ=0.6504;ERATE=0.0011;THETA=0.0042;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 144813718 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.838;BRSQ=0.726;LDAF=0.3928;AVGPOST=0.8479;RSQ=0.7908;ERATE=0.0128;THETA=0.0141;AC=872;AN=2184 GT:DS:GL:BD 0.39926741 0 1 144814647 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.519;LDAF=0.0069;AVGPOST=0.9914;RSQ=0.5185;ERATE=0.0030;THETA=0.0013;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 144814978 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.567;LDAF=0.0026;AVGPOST=0.9956;RSQ=0.3589;ERATE=0.0005;THETA=0.0043;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144815025 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.736;LDAF=0.0713;AVGPOST=0.9631;RSQ=0.8078;ERATE=0.0010;THETA=0.0039;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 144815040 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.880;LDAF=0.0057;AVGPOST=0.9986;RSQ=0.8938;ERATE=0.0004;THETA=0.0040;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 144815046 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.782;LDAF=0.0111;AVGPOST=0.9950;RSQ=0.8128;ERATE=0.0011;THETA=0.0018;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 144815061 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.799;LDAF=0.0021;AVGPOST=0.9982;RSQ=0.6073;ERATE=0.0007;THETA=0.0050;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144815079 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.650;LDAF=0.0070;AVGPOST=0.9941;RSQ=0.6611;ERATE=0.0012;THETA=0.0033;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 144815135 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.577;LDAF=0.0502;AVGPOST=0.9625;RSQ=0.6891;ERATE=0.0070;THETA=0.0051;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 144815140 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.926;BRSQ=0.606;LDAF=0.0913;AVGPOST=0.9339;RSQ=0.7294;ERATE=0.0040;THETA=0.0029;AC=174;AN=2184 GT:DS:GL:BD 0.07967033 0 1 144815142 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.578;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4140;ERATE=0.0005;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144815249 . CT C 110 PASS INDEL;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0055;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144815292 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.717;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0004;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144815303 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.636;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7323;ERATE=0.0006;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144815310 rs66494648 AC A 4573 PASS INDEL;BAVGPOST=0.985;BRSQ=0.715;LDAF=0.0270;AVGPOST=0.9838;RSQ=0.7723;ERATE=0.0006;THETA=0.0038;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 144815317 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5797;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144815325 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.910;LDAF=0.1343;AVGPOST=0.9707;RSQ=0.9237;ERATE=0.0009;THETA=0.0101;AC=288;AN=2184 GT:DS:GL:BD 0.13186814 0 1 144815701 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0027;AVGPOST=0.9973;RSQ=0.6640;ERATE=0.0008;THETA=0.0046;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144815948 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.844;LDAF=0.0030;AVGPOST=0.9973;RSQ=0.7191;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144816305 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.925;BRSQ=0.885;LDAF=0.5887;AVGPOST=0.9162;RSQ=0.8781;ERATE=0.0038;THETA=0.0018;AC=1287;AN=2184 GT:DS:GL:BD 0.58928573 1 1 144816336 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9405;ERATE=0.0004;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144817047 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5854;ERATE=0.0004;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144817054 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.446;LDAF=0.0417;AVGPOST=0.9615;RSQ=0.6831;ERATE=0.0007;THETA=0.0085;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 144817067 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0020;AVGPOST=0.9969;RSQ=0.3462;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144817266 rs3979925 A AT 261 PASS INDEL;BAVGPOST=0.637;BRSQ=0.080;LDAF=0.2690;AVGPOST=0.6294;RSQ=0.1916;ERATE=0.0252;THETA=0.0035;AC=223;AN=2184 GT:DS:GL:BD 0.10210623 0 1 144817361 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.732;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5709;ERATE=0.0004;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144818552 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.2246;ERATE=0.0003;THETA=0.0042;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 144819705 . TCAA T 5156 PASS INDEL;BAVGPOST=0.897;BRSQ=0.643;LDAF=0.1258;AVGPOST=0.8955;RSQ=0.6602;ERATE=0.0012;THETA=0.0040;AC=209;AN=2184 GT:DS:GL:BD 0.09569597 0 1 144821986 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.507;LDAF=0.0267;AVGPOST=0.9734;RSQ=0.6300;ERATE=0.0033;THETA=0.0029;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 144822652 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.961;LDAF=0.0326;AVGPOST=0.9923;RSQ=0.9171;ERATE=0.0009;THETA=0.0057;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 144822695 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.934;BRSQ=0.839;LDAF=0.2998;AVGPOST=0.9330;RSQ=0.8637;ERATE=0.0186;THETA=0.0048;AC=627;AN=2184 GT:DS:GL:BD 0.28708792 0 1 144822816 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5760;ERATE=0.0005;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144822861 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.7988;ERATE=0.0006;THETA=0.0036;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 144822864 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9019;ERATE=0.0005;THETA=0.0045;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144823048 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.946;BRSQ=0.733;LDAF=0.0892;AVGPOST=0.9550;RSQ=0.8381;ERATE=0.0004;THETA=0.0144;AC=186;AN=2184 GT:DS:GL:BD 0.08516484 0 1 144823086 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.881;LDAF=0.0226;AVGPOST=0.9940;RSQ=0.8839;ERATE=0.0028;THETA=0.0014;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 144823088 . ACTG A 75 PASS INDEL;BAVGPOST=0.995;BRSQ=0.657;LDAF=0.0159;AVGPOST=0.9801;RSQ=0.5080;ERATE=0.0024;THETA=0.0104;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 144823106 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.745;LDAF=0.0038;AVGPOST=0.9959;RSQ=0.5634;ERATE=0.0006;THETA=0.0051;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144823112 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.426;LDAF=0.0141;AVGPOST=0.9821;RSQ=0.4873;ERATE=0.0039;THETA=0.0050;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 144823556 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.888;BRSQ=0.796;LDAF=0.3310;AVGPOST=0.9033;RSQ=0.8512;ERATE=0.0022;THETA=0.0248;AC=695;AN=2184 GT:DS:GL:BD 0.31822345 0 1 144823571 rs72022450 CTGTTTG C 14150 PASS INDEL;BAVGPOST=0.777;BRSQ=0.673;LDAF=0.4476;AVGPOST=0.8065;RSQ=0.7441;ERATE=0.0022;THETA=0.0047;AC=964;AN=2184 GT:DS:GL:BD 0.44139194 0 1 144823573 rs72022450 GTT G 5598 PASS INDEL;BAVGPOST=0.766;BRSQ=0.646;LDAF=0.4677;AVGPOST=0.7958;RSQ=0.7313;ERATE=0.0024;THETA=0.0068;AC=1020;AN=2184 GT:DS:GL:BD 0.46703297 0 1 144823575 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.815;BRSQ=0.699;LDAF=0.6441;AVGPOST=0.8195;RSQ=0.7329;ERATE=0.0091;THETA=0.0094;AC=1484;AN=2184 GT:DS:GL:BD 0.67948717 1 1 144823575 rs72022450 TTG T 29512 PASS INDEL;BAVGPOST=1.000;BRSQ=0;LDAF=0.9973;AVGPOST=0.9945;RSQ=0.1369;ERATE=0.0008;THETA=0.0070;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 144823593 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.842;BRSQ=0.616;LDAF=0.2299;AVGPOST=0.8691;RSQ=0.7216;ERATE=0.0020;THETA=0.0127;AC=461;AN=2184 GT:DS:GL:BD 0.21108058 0 1 144823603 rs71716519 G GTC 3081 PASS INDEL;BAVGPOST=0.847;BRSQ=0.438;LDAF=0.1376;AVGPOST=0.8778;RSQ=0.5874;ERATE=0.0026;THETA=0.0066;AC=219;AN=2184 GT:DS:GL:BD 0.10027473 0 1 144824107 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.534;LDAF=0.0024;AVGPOST=0.9971;RSQ=0.4503;ERATE=0.0007;THETA=0.0128;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144824135 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.402;LDAF=0.0025;AVGPOST=0.9959;RSQ=0.2794;ERATE=0.0006;THETA=0.0068;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144824143 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.866;BRSQ=0.320;LDAF=0.1492;AVGPOST=0.8185;RSQ=0.3628;ERATE=0.0263;THETA=0.0105;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 144824145 . GA G 74 PASS INDEL;BAVGPOST=0.948;BRSQ=0.159;LDAF=0.0617;AVGPOST=0.8936;RSQ=0.2273;ERATE=0.0049;THETA=0.0210;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 144824412 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.934;BRSQ=0.391;LDAF=0.0839;AVGPOST=0.9059;RSQ=0.5332;ERATE=0.0031;THETA=0.0185;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 144824491 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0004;THETA=0.0088;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144824532 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.561;LDAF=0.0024;AVGPOST=0.9972;RSQ=0.5157;ERATE=0.0004;THETA=0.0057;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144824542 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.380;LDAF=0.0115;AVGPOST=0.9904;RSQ=0.6755;ERATE=0.0007;THETA=0.0123;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 144824666 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.794;BRSQ=0.594;LDAF=0.4201;AVGPOST=0.8276;RSQ=0.6974;ERATE=0.0236;THETA=0.0146;AC=847;AN=2184 GT:DS:GL:BD 0.38782051 0 1 144824844 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7193;ERATE=0.0003;THETA=0.0060;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144824855 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.958;BRSQ=0.716;LDAF=0.0809;AVGPOST=0.9502;RSQ=0.7282;ERATE=0.0163;THETA=0.0047;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 144825138 rs10693481 CCT C 319 PASS INDEL;BAVGPOST=0.945;BRSQ=0.376;LDAF=0.0681;AVGPOST=0.9107;RSQ=0.3930;ERATE=0.0124;THETA=0.0074;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 144825179 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.470;LDAF=0.0075;AVGPOST=0.9920;RSQ=0.5899;ERATE=0.0022;THETA=0.0076;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 144825209 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.599;LDAF=0.0517;AVGPOST=0.9547;RSQ=0.6178;ERATE=0.0149;THETA=0.0064;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 144825519 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.954;BRSQ=0.703;LDAF=0.0708;AVGPOST=0.9575;RSQ=0.7777;ERATE=0.0009;THETA=0.0074;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 144825611 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.886;LDAF=0.1190;AVGPOST=0.9754;RSQ=0.9000;ERATE=0.0081;THETA=0.0149;AC=251;AN=2184 GT:DS:GL:BD 0.11492674 0 1 144826308 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.929;BRSQ=0.711;LDAF=0.1792;AVGPOST=0.9171;RSQ=0.7520;ERATE=0.0207;THETA=0.0204;AC=339;AN=2184 GT:DS:GL:BD 0.15521978 0 1 144828000 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.773;BRSQ=0.248;LDAF=0.2133;AVGPOST=0.7713;RSQ=0.4427;ERATE=0.0056;THETA=0.0170;AC=279;AN=2184 GT:DS:GL:BD 0.12774725 0 1 144828292 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.944;LDAF=0.1238;AVGPOST=0.9523;RSQ=0.8501;ERATE=0.0007;THETA=0.0108;AC=257;AN=2184 GT:DS:GL:BD 0.11767399 0 1 144828335 rs72178369 TTC T 2783 PASS INDEL;BAVGPOST=0.992;BRSQ=0.884;LDAF=0.0286;AVGPOST=0.9915;RSQ=0.8924;ERATE=0.0008;THETA=0.0218;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 144828591 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0004;THETA=0.0110;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144828599 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.915;BRSQ=0.729;LDAF=0.2562;AVGPOST=0.9202;RSQ=0.7879;ERATE=0.0506;THETA=0.0035;AC=525;AN=2184 GT:DS:GL:BD 0.24038461 0 1 144828763 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9451;ERATE=0.0003;THETA=0.0216;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144829096 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0045;AVGPOST=0.9978;RSQ=0.8019;ERATE=0.0008;THETA=0.0050;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 144829168 . GT G 90 PASS INDEL;BAVGPOST=0.997;BRSQ=0.692;LDAF=0.0039;AVGPOST=0.9957;RSQ=0.5352;ERATE=0.0009;THETA=0.0057;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144829183 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.805;LDAF=0.0052;AVGPOST=0.9970;RSQ=0.7637;ERATE=0.0006;THETA=0.0066;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 144829606 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.3876;ERATE=0.0007;THETA=0.0256;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144830525 rs3979969 CTG C 112 PASS INDEL;BAVGPOST=0.983;BRSQ=0.444;LDAF=0.0423;AVGPOST=0.9369;RSQ=0.3780;ERATE=0.0099;THETA=0.0107;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 144831449 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.805;BRSQ=0.331;LDAF=0.2130;AVGPOST=0.7896;RSQ=0.4385;ERATE=0.0090;THETA=0.0085;AC=269;AN=2184 GT:DS:GL:BD 0.12316850 0 1 144831723 . A AATC 462 PASS INDEL;BAVGPOST=0.960;BRSQ=0.283;LDAF=0.0589;AVGPOST=0.9059;RSQ=0.2829;ERATE=0.0088;THETA=0.0242;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 144831891 . C CTTAA 972 PASS INDEL;BAVGPOST=0.996;BRSQ=0.677;LDAF=0.0074;AVGPOST=0.9950;RSQ=0.7159;ERATE=0.0008;THETA=0.0237;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 144833144 . TAGA T 172 PASS INDEL;BAVGPOST=0.998;BRSQ=0.705;LDAF=0.0043;AVGPOST=0.9968;RSQ=0.7206;ERATE=0.0005;THETA=0.0049;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 144834962 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.930;LDAF=0.0126;AVGPOST=0.9932;RSQ=0.7900;ERATE=0.0007;THETA=0.0114;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 144835000 . C CA 5165 PASS INDEL;BAVGPOST=0.865;BRSQ=0.488;LDAF=0.1965;AVGPOST=0.8460;RSQ=0.5477;ERATE=0.0220;THETA=0.0160;AC=280;AN=2184 GT:DS:GL:BD 0.12820514 0 1 144835021 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.662;LDAF=0.0107;AVGPOST=0.9946;RSQ=0.8056;ERATE=0.0008;THETA=0.0048;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 144835140 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.900;BRSQ=0.668;LDAF=0.8083;AVGPOST=0.8250;RSQ=0.5533;ERATE=0.0069;THETA=0.0189;AC=1874;AN=2184 GT:DS:GL:BD 0.85805863 1 1 144835221 rs56131190 TAA T 22103 PASS INDEL;BAVGPOST=0.910;BRSQ=0.265;LDAF=0.9258;AVGPOST=0.8969;RSQ=0.3908;ERATE=0.0115;THETA=0.0028;AC=2111;AN=2184 GT:DS:GL:BD 0.96657509 1 1 144835983 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.943;LDAF=0.1230;AVGPOST=0.9790;RSQ=0.9188;ERATE=0.0004;THETA=0.0090;AC=265;AN=2184 GT:DS:GL:BD 0.12133700 0 1 144836536 . CT C 34 PASS INDEL;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6334;ERATE=0.0004;THETA=0.0186;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144836875 . A ACC 6872 PASS INDEL;BAVGPOST=0.947;BRSQ=0.816;LDAF=0.1889;AVGPOST=0.9196;RSQ=0.7790;ERATE=0.0082;THETA=0.0038;AC=377;AN=2184 GT:DS:GL:BD 0.17261904 0 1 144836894 rs72336825 ATTATT A 1043 PASS INDEL;BAVGPOST=0.982;BRSQ=0.725;LDAF=0.0409;AVGPOST=0.9707;RSQ=0.6728;ERATE=0.0102;THETA=0.0172;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 144837283 . ATT A 213 PASS INDEL;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8393;ERATE=0.0005;THETA=0.0117;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144837408 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.939;BRSQ=0.678;LDAF=0.1170;AVGPOST=0.9312;RSQ=0.7253;ERATE=0.0084;THETA=0.0092;AC=213;AN=2184 GT:DS:GL:BD 0.09752747 0 1 144838409 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.901;BRSQ=0.677;LDAF=0.2338;AVGPOST=0.8656;RSQ=0.6562;ERATE=0.0235;THETA=0.0109;AC=420;AN=2184 GT:DS:GL:BD 0.19230770 0 1 144838665 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.660;LDAF=0.0112;AVGPOST=0.9916;RSQ=0.6858;ERATE=0.0009;THETA=0.0095;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 144838686 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0130;AVGPOST=0.9977;RSQ=0.9267;ERATE=0.0005;THETA=0.0075;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 144838775 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6010;ERATE=0.0004;THETA=0.0160;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144839031 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.923;LDAF=0.0626;AVGPOST=0.9914;RSQ=0.9400;ERATE=0.0007;THETA=0.0035;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 144839237 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0102;AVGPOST=0.9965;RSQ=0.8738;ERATE=0.0005;THETA=0.0053;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 144839399 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8751;ERATE=0.0004;THETA=0.0027;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144840087 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.927;LDAF=0.1066;AVGPOST=0.9875;RSQ=0.9439;ERATE=0.0005;THETA=0.0032;AC=234;AN=2184 GT:DS:GL:BD 0.10714286 0 1 144840388 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.953;LDAF=0.1077;AVGPOST=0.9901;RSQ=0.9560;ERATE=0.0005;THETA=0.0037;AC=234;AN=2184 GT:DS:GL:BD 0.10714286 0 1 144840535 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.965;LDAF=0.1183;AVGPOST=0.9919;RSQ=0.9683;ERATE=0.0004;THETA=0.0089;AC=259;AN=2184 GT:DS:GL:BD 0.11858974 0 1 144840703 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.857;LDAF=0.0141;AVGPOST=0.9956;RSQ=0.8699;ERATE=0.0009;THETA=0.0059;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 144841098 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8394;ERATE=0.0005;THETA=0.0059;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144841115 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8564;ERATE=0.0003;THETA=0.0138;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144841507 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.887;LDAF=0.9161;AVGPOST=0.9832;RSQ=0.9103;ERATE=0.0008;THETA=0.0066;AC=1999;AN=2184 GT:DS:GL:BD 0.91529304 1 1 144842913 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.892;LDAF=0.1125;AVGPOST=0.9793;RSQ=0.9176;ERATE=0.0006;THETA=0.0022;AC=246;AN=2184 GT:DS:GL:BD 0.11263736 0 1 144843116 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.846;LDAF=0.0120;AVGPOST=0.9974;RSQ=0.9162;ERATE=0.0005;THETA=0.0009;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 144843690 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.900;LDAF=0.8527;AVGPOST=0.9691;RSQ=0.9028;ERATE=0.0007;THETA=0.0051;AC=1873;AN=2184 GT:DS:GL:BD 0.85760075 1 1 144844057 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.817;LDAF=0.8444;AVGPOST=0.9575;RSQ=0.8684;ERATE=0.0025;THETA=0.0042;AC=1862;AN=2184 GT:DS:GL:BD 0.85256410 1 1 144844084 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144844096 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0004;AVGPOST=0.9992;RSQ=0.1435;ERATE=0.0004;THETA=0.0008;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 144844125 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.612;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5910;ERATE=0.0004;THETA=0.0064;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144844869 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.3391;ERATE=0.0008;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144845692 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.893;LDAF=0.1075;AVGPOST=0.9820;RSQ=0.9263;ERATE=0.0006;THETA=0.0064;AC=238;AN=2184 GT:DS:GL:BD 0.10897436 0 1 144845923 . CA C 169 PASS INDEL;BAVGPOST=0.996;BRSQ=0.689;LDAF=0.0064;AVGPOST=0.9956;RSQ=0.7114;ERATE=0.0008;THETA=0.0037;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 144846204 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.8031;ERATE=0.0003;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144847123 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.892;LDAF=0.1090;AVGPOST=0.9789;RSQ=0.9105;ERATE=0.0011;THETA=0.0061;AC=240;AN=2184 GT:DS:GL:BD 0.10989011 0 1 144847216 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0150;AVGPOST=0.9968;RSQ=0.9173;ERATE=0.0005;THETA=0.0010;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 144848984 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7717;ERATE=0.0003;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144849227 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.705;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.6274;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144849396 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.605;LDAF=0.0099;AVGPOST=0.9914;RSQ=0.6528;ERATE=0.0026;THETA=0.0051;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 144849500 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0004;THETA=0.0058;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144849530 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.603;LDAF=0.0033;AVGPOST=0.9978;RSQ=0.6892;ERATE=0.0006;THETA=0.0072;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 144849778 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.895;LDAF=0.8604;AVGPOST=0.9557;RSQ=0.8628;ERATE=0.0021;THETA=0.0024;AC=1904;AN=2184 GT:DS:GL:BD 0.87179488 1 1 144849881 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.855;LDAF=0.0032;AVGPOST=0.9981;RSQ=0.7578;ERATE=0.0005;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 144850456 . TG T 21 PASS INDEL;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0067;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144850493 rs113740030 A ACT 901 PASS INDEL;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0056;AVGPOST=0.9976;RSQ=0.8327;ERATE=0.0012;THETA=0.0062;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 144850666 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0025;AVGPOST=0.9981;RSQ=0.7197;ERATE=0.0006;THETA=0.0017;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144851071 rs66517132 TG T 19037 PASS INDEL;BAVGPOST=0.988;BRSQ=0.954;LDAF=0.1329;AVGPOST=0.9797;RSQ=0.9403;ERATE=0.0008;THETA=0.0067;AC=297;AN=2184 GT:DS:GL:BD 0.13598901 0 1 144851072 rs66517132 G GT 925 PASS INDEL;BAVGPOST=0.941;BRSQ=0.619;LDAF=0.1079;AVGPOST=0.9119;RSQ=0.6016;ERATE=0.0377;THETA=0.0081;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 144851114 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.939;LDAF=0.8440;AVGPOST=0.9751;RSQ=0.9227;ERATE=0.0014;THETA=0.0030;AC=1850;AN=2184 GT:DS:GL:BD 0.84706962 1 1 144851174 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7970;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144851188 . G GAGGT 2743 PASS INDEL;BAVGPOST=0.994;BRSQ=0.832;LDAF=0.0187;AVGPOST=0.9947;RSQ=0.8797;ERATE=0.0044;THETA=0.0052;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 144851435 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.818;LDAF=0.0696;AVGPOST=0.9685;RSQ=0.8018;ERATE=0.0189;THETA=0.0084;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 144851497 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.807;LDAF=0.0085;AVGPOST=0.9947;RSQ=0.7265;ERATE=0.0044;THETA=0.0016;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 144851563 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.815;LDAF=0.0063;AVGPOST=0.9963;RSQ=0.7910;ERATE=0.0028;THETA=0.0022;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 144851571 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9228;ERATE=0.0006;THETA=0.0057;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 144851634 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.947;LDAF=0.1122;AVGPOST=0.9885;RSQ=0.9520;ERATE=0.0013;THETA=0.0024;AC=245;AN=2184 GT:DS:GL:BD 0.11217949 0 1 144851968 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.848;LDAF=0.0138;AVGPOST=0.9929;RSQ=0.7976;ERATE=0.0016;THETA=0.0077;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 144852315 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.925;LDAF=0.0575;AVGPOST=0.9931;RSQ=0.9482;ERATE=0.0004;THETA=0.0075;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 144854397 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.960;LDAF=0.9037;AVGPOST=0.9903;RSQ=0.9555;ERATE=0.0056;THETA=0.0212;AC=1975;AN=2184 GT:DS:GL:BD 0.90430403 1 1 144854558 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0130;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144854564 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0835;AVGPOST=0.9983;RSQ=0.9918;ERATE=0.0087;THETA=0.0231;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 144854571 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0001;AVGPOST=0.9999;RSQ=0.1499;ERATE=0.0003;THETA=0.0123;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 144854580 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0220;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144854675 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.0712;AVGPOST=0.9981;RSQ=0.9889;ERATE=0.0004;THETA=0.0149;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 144854881 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.8284;ERATE=0.0003;THETA=0.0109;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144855400 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0008;AVGPOST=0.9999;RSQ=0.9255;ERATE=0.0003;THETA=0.0045;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144855782 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.918;LDAF=0.0960;AVGPOST=0.9854;RSQ=0.9339;ERATE=0.0007;THETA=0.0148;AC=212;AN=2184 GT:DS:GL:BD 0.09706960 0 1 144855866 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.954;BRSQ=0.778;LDAF=0.3934;AVGPOST=0.9588;RSQ=0.8339;ERATE=0.0457;THETA=0.0070;AC=847;AN=2184 GT:DS:GL:BD 0.38782051 0 1 144855915 . GA G 612 PASS INDEL;BAVGPOST=0.998;BRSQ=0.840;LDAF=0.0073;AVGPOST=0.9988;RSQ=0.9334;ERATE=0.0006;THETA=0.0042;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 144855938 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0043;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144856390 . CT C 247 PASS INDEL;BAVGPOST=0.993;BRSQ=0.791;LDAF=0.0189;AVGPOST=0.9891;RSQ=0.7625;ERATE=0.0072;THETA=0.0051;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 144857586 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144857653 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0168;AVGPOST=0.9994;RSQ=0.9850;ERATE=0.0004;THETA=0.0052;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 144857695 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144858354 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.561;LDAF=0.0092;AVGPOST=0.9927;RSQ=0.6933;ERATE=0.0011;THETA=0.0072;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 144858575 . GT G 296 PASS INDEL;BAVGPOST=0.998;BRSQ=0.801;LDAF=0.0051;AVGPOST=0.9967;RSQ=0.7389;ERATE=0.0027;THETA=0.0051;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 144858936 rs71264659 T TGAGAA 11186 PASS INDEL;BAVGPOST=0.949;BRSQ=0.775;LDAF=0.1719;AVGPOST=0.9289;RSQ=0.7612;ERATE=0.0722;THETA=0.0119;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 144859720 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.976;LDAF=0.9176;AVGPOST=0.9967;RSQ=0.9843;ERATE=0.0004;THETA=0.0379;AC=2005;AN=2184 GT:DS:GL:BD 0.91804028 1 1 144859744 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0151;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144859745 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0056;AVGPOST=0.9988;RSQ=0.9028;ERATE=0.0026;THETA=0.0369;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 144859850 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0131;AVGPOST=0.9985;RSQ=0.9512;ERATE=0.0010;THETA=0.0248;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 144859889 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0170;AVGPOST=0.9978;RSQ=0.9506;ERATE=0.0018;THETA=0.0296;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 144859893 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0301;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144859904 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0370;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144859906 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0371;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144859929 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0605;AVGPOST=0.9992;RSQ=0.9951;ERATE=0.0003;THETA=0.0191;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 144859987 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0019;THETA=0.0157;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144860026 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.557;LDAF=0.4999;AVGPOST=0.9994;RSQ=0.1961;ERATE=0.0006;THETA=0.0010;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144860680 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.718;LDAF=0.9074;AVGPOST=0.9122;RSQ=0.5873;ERATE=0.0126;THETA=0.0012;AC=2047;AN=2184 GT:DS:GL:BD 0.93727106 1 1 144860714 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.320;LDAF=0.0280;AVGPOST=0.9686;RSQ=0.5593;ERATE=0.0013;THETA=0.0015;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 144860719 . TGC T 4163 PASS INDEL;BAVGPOST=0.614;BRSQ=0.238;LDAF=0.3910;AVGPOST=0.6734;RSQ=0.3977;ERATE=0.0462;THETA=0.0020;AC=719;AN=2184 GT:DS:GL:BD 0.32921246 0 1 144860931 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.725;LDAF=0.0066;AVGPOST=0.9936;RSQ=0.6100;ERATE=0.0020;THETA=0.0031;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 144861424 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.684;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.6041;ERATE=0.0011;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144861468 rs78252683 CTCTT C 22949 PASS INDEL;BAVGPOST=0.967;BRSQ=0.906;LDAF=0.1766;AVGPOST=0.9757;RSQ=0.9278;ERATE=0.0159;THETA=0.0025;AC=382;AN=2184 GT:DS:GL:BD 0.17490843 0 1 144862211 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0004;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144862795 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9031;ERATE=0.0004;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144862898 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144862980 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.767;LDAF=0.1561;AVGPOST=0.9521;RSQ=0.8435;ERATE=0.0130;THETA=0.0017;AC=319;AN=2184 GT:DS:GL:BD 0.14606227 0 1 144863148 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.960;LDAF=0.1117;AVGPOST=0.9928;RSQ=0.9726;ERATE=0.0082;THETA=0.0023;AC=242;AN=2184 GT:DS:GL:BD 0.11080586 0 1 144863320 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.977;LDAF=0.0468;AVGPOST=0.9994;RSQ=0.9945;ERATE=0.0005;THETA=0.0018;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 144863401 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.984;LDAF=0.0970;AVGPOST=0.9983;RSQ=0.9917;ERATE=0.0007;THETA=0.0021;AC=211;AN=2184 GT:DS:GL:BD 0.09661172 0 1 144863802 . CT C 340 PASS INDEL;BAVGPOST=0.998;BRSQ=0.832;LDAF=0.0056;AVGPOST=0.9968;RSQ=0.7677;ERATE=0.0014;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 144864187 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0114;AVGPOST=0.9992;RSQ=0.9744;ERATE=0.0011;THETA=0.0030;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 144864682 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144864695 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144865198 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8090;ERATE=0.0003;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144865240 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.943;LDAF=0.0746;AVGPOST=0.9941;RSQ=0.9665;ERATE=0.0027;THETA=0.0008;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 144865454 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0599;AVGPOST=0.9981;RSQ=0.9876;ERATE=0.0004;THETA=0.0060;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 144865849 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0013;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 144865850 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.5000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0003;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144865914 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0027;AVGPOST=1.0000;RSQ=0.9920;ERATE=0.0008;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 144865925 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9698;ERATE=0.0010;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 144865930 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144866159 . TA T 1163 PASS INDEL;BAVGPOST=0.997;BRSQ=0.862;LDAF=0.0128;AVGPOST=0.9940;RSQ=0.8130;ERATE=0.0056;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 144866601 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0013;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144866643 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0;LDAF=0.5000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0004;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144866662 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.963;LDAF=0.5303;AVGPOST=0.9990;RSQ=0.9870;ERATE=0.0048;THETA=0.0004;AC=1158;AN=2184 GT:DS:GL:BD 0.53021979 1 1 144866668 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144866673 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9203;ERATE=0.0012;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144866688 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0616;AVGPOST=0.9998;RSQ=0.9986;ERATE=0.0003;THETA=0.0007;AC=135;AN=2184 GT:DS:GL:BD 0.06181319 0 1 144866727 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144867133 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144867914 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9861;ERATE=0.0006;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 144867982 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144868088 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0004;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144868098 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0015;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144868170 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0;LDAF=0.5000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0005;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144868204 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0;LDAF=0.5000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0002;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144868350 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.9880;AVGPOST=0.9985;RSQ=0.9496;ERATE=0.0045;THETA=0.0006;AC=2159;AN=2184 GT:DS:GL:BD 0.98855311 1 1 144869213 . CAT C 993 PASS INDEL;BAVGPOST=0.998;BRSQ=0.897;LDAF=0.0082;AVGPOST=0.9979;RSQ=0.9019;ERATE=0.0035;THETA=0.0024;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 144870237 . CAT C 92 PASS INDEL;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5877;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144870689 . A AT 219 PASS INDEL;BAVGPOST=0.999;BRSQ=0.694;LDAF=0.0038;AVGPOST=0.9954;RSQ=0.5773;ERATE=0.0012;THETA=0.0023;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 144870755 . AT A 1166 PASS INDEL;BAVGPOST=0.999;BRSQ=0.910;LDAF=0.0084;AVGPOST=0.9995;RSQ=0.9720;ERATE=0.0018;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 144870802 . C CCTA 148 PASS INDEL;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6494;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144871738 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.688;LDAF=0.5000;AVGPOST=0.9998;RSQ=0.0750;ERATE=0.0004;THETA=0.0003;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144871829 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0471;AVGPOST=0.9996;RSQ=0.9964;ERATE=0.0007;THETA=0.0005;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 144871837 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0041;AVGPOST=1.0000;RSQ=0.9947;ERATE=0.0040;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 144871889 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0;LDAF=0.5000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0004;THETA=0.0003;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144871902 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 144872389 . TC T 8697 PASS INDEL;BAVGPOST=0.995;BRSQ=0.948;LDAF=0.0481;AVGPOST=0.9942;RSQ=0.9471;ERATE=0.0129;THETA=0.0003;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 144872773 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.908;LDAF=0.0338;AVGPOST=0.9926;RSQ=0.9116;ERATE=0.0106;THETA=0.0003;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 144873840 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.678;LDAF=0.4999;AVGPOST=0.9999;RSQ=0.0832;ERATE=0.0004;THETA=0.0003;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144873887 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.744;LDAF=0.5000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0004;THETA=0.0003;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144873894 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144873925 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 144873934 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144873949 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144873960 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144873962 rs11341221 CT C 37770 PASS INDEL;BAVGPOST=0.978;BRSQ=0.914;LDAF=0.2727;AVGPOST=0.9820;RSQ=0.9502;ERATE=0.0114;THETA=0.0002;AC=593;AN=2184 GT:DS:GL:BD 0.27152014 0 1 144873979 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 144873987 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0001;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 144874021 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0001;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144874038 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.644;LDAF=0.4997;AVGPOST=0.9996;RSQ=0.5998;ERATE=0.0003;THETA=0.0002;AC=1091;AN=2184 GT:DS:GL:BD 0.49954212 0 1 144874070 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.545;LDAF=0.5000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0001;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144874641 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.421;LDAF=0.5000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0003;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144874752 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144874760 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.345;LDAF=0.5000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0004;THETA=0.0007;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144874769 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 144874835 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0255;AVGPOST=0.9988;RSQ=0.9810;ERATE=0.0131;THETA=0.0004;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 144874839 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0137;AVGPOST=0.9998;RSQ=0.9919;ERATE=0.0037;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 144874928 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.974;LDAF=0.0761;AVGPOST=0.9972;RSQ=0.9844;ERATE=0.0025;THETA=0.0004;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 144874950 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.102;LDAF=0.5000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0003;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144875814 . GA G 1532 PASS INDEL;BAVGPOST=0.998;BRSQ=0.897;LDAF=0.0081;AVGPOST=0.9992;RSQ=0.9569;ERATE=0.0023;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 144875979 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.2170;AVGPOST=0.9988;RSQ=0.9966;ERATE=0.0013;THETA=0.0002;AC=473;AN=2184 GT:DS:GL:BD 0.21657509 0 1 144876053 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9882;ERATE=0.0035;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 144876055 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 144876061 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 144876383 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.968;LDAF=0.1191;AVGPOST=0.9957;RSQ=0.9841;ERATE=0.0004;THETA=0.0002;AC=263;AN=2184 GT:DS:GL:BD 0.12042125 0 1 144876745 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.902;LDAF=0.0995;AVGPOST=0.9842;RSQ=0.9266;ERATE=0.0344;THETA=0.0003;AC=211;AN=2184 GT:DS:GL:BD 0.09661172 0 1 144877176 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0;LDAF=0.4997;AVGPOST=0.9994;RSQ=0.1649;ERATE=0.0003;THETA=0.0003;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144877475 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144877793 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144877902 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144878390 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.777;LDAF=0.1747;AVGPOST=0.9367;RSQ=0.8088;ERATE=0.0217;THETA=0.0002;AC=367;AN=2184 GT:DS:GL:BD 0.16804029 0 1 144878526 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144879087 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144879090 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.2661;AVGPOST=0.9988;RSQ=0.9961;ERATE=0.0016;THETA=0.0003;AC=581;AN=2184 GT:DS:GL:BD 0.26602563 0 1 144879208 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144879242 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144879264 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.943;LDAF=0.7574;AVGPOST=0.9853;RSQ=0.9580;ERATE=0.0213;THETA=0.0002;AC=1654;AN=2184 GT:DS:GL:BD 0.75732601 1 1 144879339 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0710;AVGPOST=0.9989;RSQ=0.9933;ERATE=0.0037;THETA=0.0002;AC=156;AN=2184 GT:DS:GL:BD 0.07142857 0 1 144879375 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0;LDAF=0.5000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0001;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144879386 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0007;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144879391 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144879485 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0477;AVGPOST=0.9995;RSQ=0.9964;ERATE=0.0007;THETA=0.0001;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 144880076 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.876;LDAF=0.9217;AVGPOST=0.9807;RSQ=0.9003;ERATE=0.0140;THETA=0.0003;AC=2018;AN=2184 GT:DS:GL:BD 0.92399269 1 1 144880487 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.512;LDAF=0.0033;AVGPOST=0.9971;RSQ=0.6343;ERATE=0.0012;THETA=0.0001;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 144880693 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.1199;AVGPOST=0.9979;RSQ=0.9918;ERATE=0.0015;THETA=0.0002;AC=263;AN=2184 GT:DS:GL:BD 0.12042125 0 1 144880733 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144880768 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 144880814 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0611;AVGPOST=0.9998;RSQ=0.9984;ERATE=0.0003;THETA=0.0002;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 144880832 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.2042;AVGPOST=0.9998;RSQ=0.9993;ERATE=0.0008;THETA=0.0002;AC=445;AN=2184 GT:DS:GL:BD 0.20375457 0 1 144880834 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0178;AVGPOST=1.0000;RSQ=0.9987;ERATE=0.0013;THETA=0.0002;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 144880864 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1206;AVGPOST=0.9999;RSQ=0.9994;ERATE=0.0018;THETA=0.0001;AC=264;AN=2184 GT:DS:GL:BD 0.12087912 0 1 144881389 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.5000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0002;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144881416 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0013;AVGPOST=0.9999;RSQ=0.9689;ERATE=0.0013;THETA=0.0001;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144881520 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144881564 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144881578 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144881583 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0604;AVGPOST=0.9989;RSQ=0.9927;ERATE=0.0003;THETA=0.0001;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 144881666 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1215;AVGPOST=0.9991;RSQ=0.9971;ERATE=0.0004;THETA=0.0003;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 144881672 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0099;AVGPOST=0.9993;RSQ=0.9735;ERATE=0.0019;THETA=0.0002;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 144882127 . TACC T 158 PASS INDEL;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8313;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144882244 . A AC 84 PASS INDEL;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7905;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144882413 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0082;AVGPOST=1.0000;RSQ=0.9973;ERATE=0.0071;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 144882438 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0209;AVGPOST=0.9996;RSQ=0.9930;ERATE=0.0169;THETA=0.0002;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 144882472 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0009;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144882505 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144882581 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0;LDAF=0.5000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0001;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144882589 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 144882759 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0001;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 144882766 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0001;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 144882778 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144882789 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 144882799 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144882823 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0;LDAF=0.5000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0002;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144882841 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144882848 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0008;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144882912 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.976;LDAF=0.2897;AVGPOST=0.9984;RSQ=0.9949;ERATE=0.0032;THETA=0.0003;AC=635;AN=2184 GT:DS:GL:BD 0.29075092 0 1 144883909 . T TA 612 PASS INDEL;BAVGPOST=0.968;BRSQ=0.619;LDAF=0.0543;AVGPOST=0.9717;RSQ=0.7850;ERATE=0.0051;THETA=0.0002;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 144884147 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.629;LDAF=0.9966;AVGPOST=0.9966;RSQ=0.6073;ERATE=0.0006;THETA=0.0003;AC=2178;AN=2184 GT:DS:GL:BD 0.99725276 1 1 144884583 rs10527294 CCTT C 1313 PASS INDEL;BAVGPOST=0.997;BRSQ=0.835;LDAF=0.0102;AVGPOST=0.9960;RSQ=0.8421;ERATE=0.0021;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 144884657 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.884;LDAF=0.0084;AVGPOST=0.9956;RSQ=0.8109;ERATE=0.0030;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 144885536 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.568;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5599;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144885571 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.712;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7013;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144885574 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.843;LDAF=0.0393;AVGPOST=0.9912;RSQ=0.9120;ERATE=0.0041;THETA=0.0003;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 144886063 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.603;LDAF=0.4999;AVGPOST=0.9998;RSQ=0.1298;ERATE=0.0004;THETA=0.0004;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144886092 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.645;LDAF=0.4999;AVGPOST=0.9998;RSQ=0.0299;ERATE=0.0005;THETA=0.0004;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144886197 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.704;LDAF=0.4999;AVGPOST=0.9998;RSQ=0.0748;ERATE=0.0004;THETA=0.0015;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144886220 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0029;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 144886267 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0018;AVGPOST=0.9999;RSQ=0.9768;ERATE=0.0013;THETA=0.0023;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144886285 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144886350 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.2164;AVGPOST=0.9993;RSQ=0.9980;ERATE=0.0004;THETA=0.0194;AC=471;AN=2184 GT:DS:GL:BD 0.21565934 0 1 144887889 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0004;THETA=0.0195;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144888451 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4979;ERATE=0.0005;THETA=0.0136;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144888477 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7290;ERATE=0.0004;THETA=0.0225;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144888576 . CT C 177 PASS INDEL;BAVGPOST=0.997;BRSQ=0.671;LDAF=0.0082;AVGPOST=0.9945;RSQ=0.7221;ERATE=0.0012;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 144888641 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.597;LDAF=0.0230;AVGPOST=0.9795;RSQ=0.6548;ERATE=0.0099;THETA=0.0158;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 144888892 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6568;ERATE=0.0004;THETA=0.0203;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144889445 rs67110458 GA G 18198 PASS INDEL;BAVGPOST=0.989;BRSQ=0.941;LDAF=0.1111;AVGPOST=0.9906;RSQ=0.9622;ERATE=0.0006;THETA=0.0179;AC=243;AN=2184 GT:DS:GL:BD 0.11126374 0 1 144889465 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.965;LDAF=0.0569;AVGPOST=0.9955;RSQ=0.9681;ERATE=0.0005;THETA=0.0098;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 144889942 . CTA C 321 PASS INDEL;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0038;AVGPOST=0.9961;RSQ=0.6075;ERATE=0.0021;THETA=0.0065;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 144889995 . C CT 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7109;ERATE=0.0004;THETA=0.0141;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144890132 . AC A 349 PASS INDEL;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0044;AVGPOST=0.9985;RSQ=0.8633;ERATE=0.0009;THETA=0.0027;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 144890279 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.956;LDAF=0.0334;AVGPOST=0.9953;RSQ=0.9486;ERATE=0.0008;THETA=0.0122;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 144891969 . TCA T 377 PASS INDEL;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.9060;ERATE=0.0004;THETA=0.0130;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144892217 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0084;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144892250 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0246;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144892473 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0189;AVGPOST=0.9997;RSQ=0.9928;ERATE=0.0013;THETA=0.0207;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 144892788 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.970;LDAF=0.8674;AVGPOST=0.9910;RSQ=0.9685;ERATE=0.0010;THETA=0.0028;AC=1895;AN=2184 GT:DS:GL:BD 0.86767399 1 1 144893201 . C CA 3018 PASS INDEL;BAVGPOST=0.997;BRSQ=0.920;LDAF=0.0155;AVGPOST=0.9983;RSQ=0.9592;ERATE=0.0004;THETA=0.0096;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 144893239 . AT A 2236 PASS INDEL;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0102;AVGPOST=0.9984;RSQ=0.9423;ERATE=0.0009;THETA=0.0023;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 144894137 rs80102014 A ACT 34770 PASS INDEL;BAVGPOST=0.919;BRSQ=0.710;LDAF=0.3415;AVGPOST=0.9128;RSQ=0.7188;ERATE=0.0981;THETA=0.0066;AC=678;AN=2184 GT:DS:GL:BD 0.31043956 0 1 144894427 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.848;LDAF=0.0160;AVGPOST=0.9905;RSQ=0.7490;ERATE=0.0024;THETA=0.0165;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 144894447 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4949;ERATE=0.0004;THETA=0.0142;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144894611 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.980;LDAF=0.5641;AVGPOST=0.9804;RSQ=0.9702;ERATE=0.0018;THETA=0.0008;AC=1230;AN=2184 GT:DS:GL:BD 0.56318682 1 1 144894697 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.905;BRSQ=0.645;LDAF=0.1711;AVGPOST=0.8958;RSQ=0.7054;ERATE=0.0676;THETA=0.0019;AC=331;AN=2184 GT:DS:GL:BD 0.15155677 0 1 144894765 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0138;AVGPOST=0.9998;RSQ=0.9935;ERATE=0.0004;THETA=0.0010;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 144894911 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.779;LDAF=0.0033;AVGPOST=0.9979;RSQ=0.7047;ERATE=0.0008;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 144894940 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144895075 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.766;LDAF=0.0049;AVGPOST=0.9966;RSQ=0.7527;ERATE=0.0005;THETA=0.0015;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 144895105 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.782;LDAF=0.0068;AVGPOST=0.9959;RSQ=0.7867;ERATE=0.0005;THETA=0.0024;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 144895129 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.704;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.4545;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144895329 . G GT 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7566;ERATE=0.0004;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144896293 . T TG 308 PASS INDEL;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0031;AVGPOST=0.9979;RSQ=0.7209;ERATE=0.0015;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 144896319 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.952;LDAF=0.3800;AVGPOST=0.9731;RSQ=0.9585;ERATE=0.0066;THETA=0.0009;AC=823;AN=2184 GT:DS:GL:BD 0.37683150 0 1 144896960 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0020;AVGPOST=0.9981;RSQ=0.6384;ERATE=0.0005;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144897002 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.838;LDAF=0.0078;AVGPOST=0.9970;RSQ=0.8609;ERATE=0.0006;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 144897112 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5438;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144897380 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1505;AVGPOST=0.9990;RSQ=0.9972;ERATE=0.0004;THETA=0.0006;AC=329;AN=2184 GT:DS:GL:BD 0.15064102 0 1 144897475 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.4815;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144897584 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.6970;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144897652 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8625;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144897692 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5224;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144897695 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.695;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.6993;ERATE=0.0004;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144897706 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.816;LDAF=0.0114;AVGPOST=0.9926;RSQ=0.7266;ERATE=0.0018;THETA=0.0011;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 144897772 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8498;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144897834 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0021;AVGPOST=0.9977;RSQ=0.5438;ERATE=0.0005;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144897853 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8497;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144897876 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.962;LDAF=0.1253;AVGPOST=0.9894;RSQ=0.9620;ERATE=0.0005;THETA=0.0010;AC=270;AN=2184 GT:DS:GL:BD 0.12362637 0 1 144898109 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5134;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144898297 . C CCCAGT 629 PASS INDEL;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0057;AVGPOST=0.9966;RSQ=0.7721;ERATE=0.0005;THETA=0.0016;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 144898551 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144898723 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.6944;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144898824 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1517;AVGPOST=0.9952;RSQ=0.9887;ERATE=0.0007;THETA=0.0010;AC=332;AN=2184 GT:DS:GL:BD 0.15201466 0 1 144899007 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.793;LDAF=0.0018;AVGPOST=0.9988;RSQ=0.7247;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144899159 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.936;BRSQ=0.801;LDAF=0.2119;AVGPOST=0.8920;RSQ=0.7362;ERATE=0.0345;THETA=0.0008;AC=389;AN=2184 GT:DS:GL:BD 0.17811355 0 1 144899538 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.835;LDAF=0.0038;AVGPOST=0.9985;RSQ=0.8246;ERATE=0.0006;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 144899918 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144899940 . GT G 8537 PASS INDEL;BAVGPOST=0.868;BRSQ=0.547;LDAF=0.2779;AVGPOST=0.8379;RSQ=0.5618;ERATE=0.0941;THETA=0.0005;AC=477;AN=2184 GT:DS:GL:BD 0.21840659 0 1 144900003 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5782;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144900209 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.866;LDAF=0.0051;AVGPOST=0.9980;RSQ=0.8575;ERATE=0.0004;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 144900275 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.616;LDAF=0.0038;AVGPOST=0.9962;RSQ=0.6045;ERATE=0.0007;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 144900467 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.772;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5035;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144900595 . A AT 72 PASS INDEL;BAVGPOST=0.986;BRSQ=0.063;LDAF=0.1545;AVGPOST=0.7666;RSQ=0.2925;ERATE=0.0158;THETA=0.0020;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 144900935 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5357;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144900946 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.834;LDAF=0.0030;AVGPOST=0.9981;RSQ=0.7271;ERATE=0.0008;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 144900961 . T TTTGC 196 PASS INDEL;BAVGPOST=0.990;BRSQ=0.079;LDAF=0.0437;AVGPOST=0.9348;RSQ=0.3796;ERATE=0.0026;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 144901025 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.737;LDAF=0.0036;AVGPOST=0.9987;RSQ=0.8508;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 144901171 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.713;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.6097;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144901240 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0143;AVGPOST=0.9997;RSQ=0.9898;ERATE=0.0004;THETA=0.0032;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 144901282 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144901449 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.5988;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144901576 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.683;LDAF=0.0024;AVGPOST=0.9985;RSQ=0.7346;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144901580 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8807;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144901634 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9256;ERATE=0.0003;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144901820 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0047;AVGPOST=0.9989;RSQ=0.8916;ERATE=0.0006;THETA=0.0015;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 144901871 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.9291;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 144901893 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.910;LDAF=0.0165;AVGPOST=0.9917;RSQ=0.7976;ERATE=0.0027;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 144901951 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0031;AVGPOST=0.9986;RSQ=0.7984;ERATE=0.0007;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 144901955 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1496;AVGPOST=0.9984;RSQ=0.9960;ERATE=0.0003;THETA=0.0017;AC=328;AN=2184 GT:DS:GL:BD 0.15018316 0 1 144902040 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5407;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144902127 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144902443 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.741;LDAF=0.0050;AVGPOST=0.9941;RSQ=0.5663;ERATE=0.0006;THETA=0.0019;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 144902506 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0028;AVGPOST=0.9992;RSQ=0.8670;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 144902622 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7222;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144902898 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144902941 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144902955 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9524;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144903056 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144903152 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144903233 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0084;AVGPOST=0.9996;RSQ=0.9881;ERATE=0.0003;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 144903243 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0084;AVGPOST=0.9996;RSQ=0.9840;ERATE=0.0004;THETA=0.0020;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 144903285 . A AT 4461 PASS INDEL;BAVGPOST=0.974;BRSQ=0.585;LDAF=0.0435;AVGPOST=0.9643;RSQ=0.6541;ERATE=0.0014;THETA=0.0009;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 144903286 . A AC 4157 PASS INDEL;BAVGPOST=0.975;BRSQ=0.596;LDAF=0.0417;AVGPOST=0.9659;RSQ=0.6664;ERATE=0.0014;THETA=0.0014;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 144903355 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144903476 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8672;ERATE=0.0004;THETA=0.0015;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 144903502 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0140;AVGPOST=0.9991;RSQ=0.9742;ERATE=0.0004;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 144903653 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7089;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144903815 . A AT 1451 PASS INDEL;BAVGPOST=0.976;BRSQ=0.751;LDAF=0.0741;AVGPOST=0.9381;RSQ=0.6267;ERATE=0.0302;THETA=0.0007;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 144903853 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.808;LDAF=0.0045;AVGPOST=0.9975;RSQ=0.7732;ERATE=0.0006;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 144903916 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.543;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4487;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144904025 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.1652;AVGPOST=0.9907;RSQ=0.9778;ERATE=0.0013;THETA=0.0019;AC=356;AN=2184 GT:DS:GL:BD 0.16300367 0 1 144904045 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0023;AVGPOST=0.9980;RSQ=0.6494;ERATE=0.0007;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144904213 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.581;LDAF=0.0036;AVGPOST=0.9971;RSQ=0.6781;ERATE=0.0005;THETA=0.0036;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 144904269 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0060;AVGPOST=0.9980;RSQ=0.8904;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 144904273 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0133;AVGPOST=0.9999;RSQ=0.9955;ERATE=0.0003;THETA=0.0017;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 144904327 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0058;AVGPOST=0.9986;RSQ=0.9148;ERATE=0.0007;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 144904346 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6705;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144904444 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144904481 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144904486 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144904579 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144904704 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144904743 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144904766 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144904783 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144904824 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144905011 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7951;ERATE=0.0004;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144905063 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6503;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144905094 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7467;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144905157 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144905168 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8037;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144905213 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0060;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144905348 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.804;LDAF=0.0083;AVGPOST=0.9963;RSQ=0.8145;ERATE=0.0007;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 144905633 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0004;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144905921 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144906018 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144906508 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.972;LDAF=0.0880;AVGPOST=0.9956;RSQ=0.9792;ERATE=0.0021;THETA=0.0005;AC=188;AN=2184 GT:DS:GL:BD 0.08608059 0 1 144906526 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8924;ERATE=0.0003;THETA=0.0098;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144908266 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8407;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144908388 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.910;LDAF=0.1097;AVGPOST=0.9835;RSQ=0.9305;ERATE=0.0006;THETA=0.0010;AC=237;AN=2184 GT:DS:GL:BD 0.10851648 0 1 144909068 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7727;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144909149 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.718;LDAF=0.0199;AVGPOST=0.9868;RSQ=0.7472;ERATE=0.0025;THETA=0.0039;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 144909388 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.720;LDAF=0.0034;AVGPOST=0.9986;RSQ=0.8190;ERATE=0.0006;THETA=0.0032;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 144909393 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.837;LDAF=0.0066;AVGPOST=0.9977;RSQ=0.8632;ERATE=0.0004;THETA=0.0067;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 144909435 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6605;ERATE=0.0005;THETA=0.0076;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144909487 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7255;ERATE=0.0004;THETA=0.0048;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144909505 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0020;AVGPOST=0.9992;RSQ=0.8206;ERATE=0.0004;THETA=0.0085;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144909517 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6392;ERATE=0.0004;THETA=0.0089;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144909518 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.625;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5134;ERATE=0.0006;THETA=0.0060;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144909536 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.679;LDAF=0.0083;AVGPOST=0.9948;RSQ=0.7625;ERATE=0.0008;THETA=0.0028;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 144909569 . AG A 180 PASS INDEL;BAVGPOST=0.995;BRSQ=0.669;LDAF=0.0644;AVGPOST=0.9029;RSQ=0.3497;ERATE=0.0088;THETA=0.0017;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 144909588 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.861;LDAF=0.0306;AVGPOST=0.9888;RSQ=0.8501;ERATE=0.0093;THETA=0.0011;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 144909677 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7363;ERATE=0.0003;THETA=0.0063;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144909865 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144909956 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.2966;AVGPOST=0.9982;RSQ=0.9945;ERATE=0.0298;THETA=0.0163;AC=647;AN=2184 GT:DS:GL:BD 0.29624543 0 1 144910082 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.941;LDAF=0.8761;AVGPOST=0.9904;RSQ=0.9637;ERATE=0.0005;THETA=0.0258;AC=1913;AN=2184 GT:DS:GL:BD 0.87591577 1 1 144910599 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.834;LDAF=0.1160;AVGPOST=0.9635;RSQ=0.8524;ERATE=0.0196;THETA=0.0138;AC=233;AN=2184 GT:DS:GL:BD 0.10668498 0 1 144910599 . TATAA T 666 PASS INDEL;BAVGPOST=0.990;BRSQ=0.482;LDAF=0.0499;AVGPOST=0.9251;RSQ=0.4122;ERATE=0.0045;THETA=0.0040;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 144910749 . AT A 1845 PASS INDEL;BAVGPOST=0.974;BRSQ=0.493;LDAF=0.0405;AVGPOST=0.9531;RSQ=0.5033;ERATE=0.0038;THETA=0.0195;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 144911057 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.886;LDAF=0.0550;AVGPOST=0.9914;RSQ=0.9378;ERATE=0.0004;THETA=0.0110;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 144911557 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.964;LDAF=0.0913;AVGPOST=0.9966;RSQ=0.9821;ERATE=0.0006;THETA=0.0018;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 144911934 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9904;ERATE=0.0005;THETA=0.0081;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 144911949 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0013;AVGPOST=1.0000;RSQ=0.9839;ERATE=0.0004;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144912110 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0180;AVGPOST=0.9995;RSQ=0.9899;ERATE=0.0004;THETA=0.0007;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 144912152 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0005;THETA=0.0123;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144912153 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.8707;AVGPOST=0.9976;RSQ=0.9911;ERATE=0.0004;THETA=0.0072;AC=1900;AN=2184 GT:DS:GL:BD 0.86996335 1 1 144912161 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144912169 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0176;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 144912191 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0007;THETA=0.0025;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 144912233 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.942;LDAF=0.4250;AVGPOST=0.9910;RSQ=0.9514;ERATE=0.0138;THETA=0.0009;AC=925;AN=2184 GT:DS:GL:BD 0.42353481 0 1 144913698 . AC A 76 PASS INDEL;BAVGPOST=0.999;BRSQ=0.428;LDAF=0.0387;AVGPOST=0.9488;RSQ=0.5155;ERATE=0.0023;THETA=0.0036;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 144914057 . T TC 427 PASS INDEL;BAVGPOST=0.970;BRSQ=0.251;LDAF=0.0743;AVGPOST=0.8844;RSQ=0.3265;ERATE=0.0123;THETA=0.0016;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 144914477 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.892;LDAF=0.0244;AVGPOST=0.9937;RSQ=0.8988;ERATE=0.0031;THETA=0.0006;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 144914816 . GA G 88 PASS INDEL;BAVGPOST=0.998;BRSQ=0.309;LDAF=0.0569;AVGPOST=0.9045;RSQ=0.3035;ERATE=0.0039;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 144915412 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.971;LDAF=0.3805;AVGPOST=0.9959;RSQ=0.9841;ERATE=0.0029;THETA=0.0004;AC=830;AN=2184 GT:DS:GL:BD 0.38003662 0 1 144915433 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0008;AVGPOST=0.9998;RSQ=0.9026;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144915452 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144915463 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0006;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 144915476 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0040;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 144915499 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0043;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 144915503 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 144915514 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0033;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 144915561 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0;LDAF=0.5000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0012;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144915623 rs66512216 AG A 26735 PASS INDEL;BAVGPOST=0.973;BRSQ=0.911;LDAF=0.1971;AVGPOST=0.9750;RSQ=0.9255;ERATE=0.0155;THETA=0.0011;AC=421;AN=2184 GT:DS:GL:BD 0.19276556 0 1 144915624 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.955;LDAF=0.3699;AVGPOST=0.9909;RSQ=0.9664;ERATE=0.0216;THETA=0.0011;AC=807;AN=2184 GT:DS:GL:BD 0.36950549 0 1 144916232 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144916370 rs68164265 GT G 31966 PASS INDEL;BAVGPOST=0.984;BRSQ=0.940;LDAF=0.2490;AVGPOST=0.9833;RSQ=0.9539;ERATE=0.0068;THETA=0.0003;AC=540;AN=2184 GT:DS:GL:BD 0.24725275 0 1 144916644 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144916676 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2659;AVGPOST=0.9998;RSQ=0.9993;ERATE=0.0004;THETA=0.0001;AC=582;AN=2184 GT:DS:GL:BD 0.26648352 0 1 144916748 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0;LDAF=0.5000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0002;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144916809 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144916902 rs72049181 A AT 16532 PASS INDEL;BAVGPOST=0.969;BRSQ=0.870;LDAF=0.1758;AVGPOST=0.9670;RSQ=0.9007;ERATE=0.0109;THETA=0.0005;AC=376;AN=2184 GT:DS:GL:BD 0.17216118 0 1 144916975 . A AT 67 PASS INDEL;BAVGPOST=0.997;BRSQ=0.238;LDAF=0.0497;AVGPOST=0.9300;RSQ=0.4563;ERATE=0.0029;THETA=0.0003;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 144916995 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.918;LDAF=0.8705;AVGPOST=0.9882;RSQ=0.9547;ERATE=0.0046;THETA=0.0012;AC=1902;AN=2184 GT:DS:GL:BD 0.87087911 1 1 144917023 . CAGAT C 164 PASS INDEL;BAVGPOST=0.994;BRSQ=0.123;LDAF=0.0619;AVGPOST=0.8990;RSQ=0.3617;ERATE=0.0039;THETA=0.0007;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 144917534 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144917546 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.5000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0005;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144917567 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0123;AVGPOST=1.0000;RSQ=0.9982;ERATE=0.0004;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 144917636 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0019;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144917809 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0264;AVGPOST=0.9986;RSQ=0.9802;ERATE=0.0084;THETA=0.0004;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 144917827 rs11295415 CA C 29670 PASS INDEL;BAVGPOST=0.981;BRSQ=0.927;LDAF=0.2508;AVGPOST=0.9801;RSQ=0.9460;ERATE=0.0090;THETA=0.0003;AC=550;AN=2184 GT:DS:GL:BD 0.25183150 0 1 144917841 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0;LDAF=0.5000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0003;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144917921 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0018;AVGPOST=1.0000;RSQ=0.9879;ERATE=0.0021;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144918292 . G GA 8 PASS INDEL;BAVGPOST=0.981;BRSQ=0.135;LDAF=0.0623;AVGPOST=0.9186;RSQ=0.4761;ERATE=0.0025;THETA=0.0013;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 144918330 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.845;LDAF=0.0413;AVGPOST=0.9922;RSQ=0.9216;ERATE=0.0044;THETA=0.0003;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 144918585 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.828;LDAF=0.0096;AVGPOST=0.9986;RSQ=0.9495;ERATE=0.0004;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 144918697 . ATCC A 139 PASS INDEL;BAVGPOST=0.980;BRSQ=0.213;LDAF=0.0680;AVGPOST=0.9004;RSQ=0.3805;ERATE=0.0033;THETA=0.0005;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 144918797 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144918890 . CTG C 108 PASS INDEL;BAVGPOST=0.994;BRSQ=0.134;LDAF=0.0739;AVGPOST=0.8900;RSQ=0.3804;ERATE=0.0064;THETA=0.0002;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 144918957 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.5000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0004;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144919008 rs11296953 AC A 29667 PASS INDEL;BAVGPOST=0.977;BRSQ=0.916;LDAF=0.2451;AVGPOST=0.9768;RSQ=0.9360;ERATE=0.0154;THETA=0.0002;AC=535;AN=2184 GT:DS:GL:BD 0.24496336 0 1 144919367 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144919879 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.887;LDAF=0.0076;AVGPOST=0.9973;RSQ=0.8601;ERATE=0.0006;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 144919925 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144920087 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0032;AVGPOST=0.9969;RSQ=0.6333;ERATE=0.0008;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144920273 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.746;LDAF=0.0230;AVGPOST=0.9800;RSQ=0.6532;ERATE=0.0050;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 144920322 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.728;LDAF=0.0955;AVGPOST=0.9359;RSQ=0.7006;ERATE=0.0216;THETA=0.0003;AC=161;AN=2184 GT:DS:GL:BD 0.07371795 0 1 144920388 . AAGAG A 600 PASS INDEL;BAVGPOST=0.993;BRSQ=0.502;LDAF=0.0147;AVGPOST=0.9819;RSQ=0.5067;ERATE=0.0012;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 144920426 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.935;LDAF=0.0121;AVGPOST=0.9980;RSQ=0.9379;ERATE=0.0004;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 144920439 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.783;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.8961;ERATE=0.0007;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 144920474 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.935;BRSQ=0.760;LDAF=0.1917;AVGPOST=0.9576;RSQ=0.8760;ERATE=0.0039;THETA=0.0033;AC=419;AN=2184 GT:DS:GL:BD 0.19184981 0 1 144920475 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.752;LDAF=0.0365;AVGPOST=0.9868;RSQ=0.8552;ERATE=0.0010;THETA=0.0007;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 144920515 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.953;BRSQ=0.739;LDAF=0.1066;AVGPOST=0.9624;RSQ=0.8354;ERATE=0.0091;THETA=0.0004;AC=223;AN=2184 GT:DS:GL:BD 0.10210623 0 1 144920558 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6406;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144920562 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.956;BRSQ=0.806;LDAF=0.1505;AVGPOST=0.9374;RSQ=0.7853;ERATE=0.0233;THETA=0.0004;AC=287;AN=2184 GT:DS:GL:BD 0.13141026 0 1 144920628 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.648;LDAF=0.0030;AVGPOST=0.9971;RSQ=0.6002;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 144920668 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.942;BRSQ=0.697;LDAF=0.1321;AVGPOST=0.9272;RSQ=0.7280;ERATE=0.0048;THETA=0.0033;AC=248;AN=2184 GT:DS:GL:BD 0.11355311 0 1 144920754 rs4067337 GA G 40271 PASS INDEL;BAVGPOST=0.940;BRSQ=0.444;LDAF=0.4595;AVGPOST=0.9400;RSQ=0.5689;ERATE=0.0351;THETA=0.0007;AC=1000;AN=2184 GT:DS:GL:BD 0.45787546 0 1 144920927 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.967;LDAF=0.0582;AVGPOST=0.9968;RSQ=0.9766;ERATE=0.0004;THETA=0.0004;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 144920945 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0014;AVGPOST=0.9994;RSQ=0.8028;ERATE=0.0014;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144921115 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144921812 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0091;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0030;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 144921841 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0006;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144921850 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144921857 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0142;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0024;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 144921877 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9815;ERATE=0.0031;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 144921924 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.987;LDAF=0.2037;AVGPOST=0.9970;RSQ=0.9916;ERATE=0.0051;THETA=0.0002;AC=442;AN=2184 GT:DS:GL:BD 0.20238096 0 1 144921941 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144921950 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0159;AVGPOST=0.9998;RSQ=0.9944;ERATE=0.0007;THETA=0.0012;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 144922139 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0008;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144922171 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.5000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0004;THETA=0.0058;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144922194 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144922238 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0003;THETA=0.0044;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144922252 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9874;ERATE=0.0041;THETA=0.0029;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 144922294 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0105;AVGPOST=1.0000;RSQ=0.9979;ERATE=0.0048;THETA=0.0042;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 144922380 . CAATT C 47 PASS INDEL;BAVGPOST=0.997;BRSQ=0.254;LDAF=0.0248;AVGPOST=0.9662;RSQ=0.4753;ERATE=0.0010;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 144922523 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2614;AVGPOST=0.9999;RSQ=0.9997;ERATE=0.0011;THETA=0.0045;AC=572;AN=2184 GT:DS:GL:BD 0.26190478 0 1 144922524 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0197;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0103;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 144922583 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.472;LDAF=0.5002;AVGPOST=0.9996;RSQ=0.2163;ERATE=0.0082;THETA=0.0088;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144922593 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0046;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0021;THETA=0.0049;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 144923316 rs67184419 A AT 6021 PASS INDEL;BAVGPOST=0.956;BRSQ=0.756;LDAF=0.1136;AVGPOST=0.9535;RSQ=0.8070;ERATE=0.0132;THETA=0.0036;AC=232;AN=2184 GT:DS:GL:BD 0.10622711 0 1 144923738 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0047;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144924363 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.898;LDAF=0.0654;AVGPOST=0.9914;RSQ=0.9443;ERATE=0.0007;THETA=0.0019;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 144924468 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.6140;ERATE=0.0004;THETA=0.0051;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144924605 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.700;LDAF=0.0028;AVGPOST=0.9973;RSQ=0.6180;ERATE=0.0018;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144924663 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0027;AVGPOST=0.9981;RSQ=0.7393;ERATE=0.0006;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144925242 . CACTA C 866 PASS INDEL;BAVGPOST=0.974;BRSQ=0.207;LDAF=0.1196;AVGPOST=0.8248;RSQ=0.3317;ERATE=0.0107;THETA=0.0022;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 144925772 . TTAA T 145 PASS INDEL;BAVGPOST=0.996;BRSQ=0.200;LDAF=0.0140;AVGPOST=0.9795;RSQ=0.4558;ERATE=0.0010;THETA=0.0019;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 144926804 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144927176 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.937;LDAF=0.0558;AVGPOST=0.9965;RSQ=0.9731;ERATE=0.0004;THETA=0.0013;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 144927219 . TC T 126 PASS INDEL;BAVGPOST=0.995;BRSQ=0.264;LDAF=0.0724;AVGPOST=0.9006;RSQ=0.4624;ERATE=0.0047;THETA=0.0018;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 144927405 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.965;LDAF=0.0570;AVGPOST=0.9963;RSQ=0.9727;ERATE=0.0007;THETA=0.0013;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 144927526 . ACAG A 117 PASS INDEL;BAVGPOST=0.997;BRSQ=0.250;LDAF=0.0432;AVGPOST=0.9428;RSQ=0.4580;ERATE=0.0035;THETA=0.0042;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 144927551 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6936;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144927622 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8154;ERATE=0.0003;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144928337 . C CA 70 PASS INDEL;BAVGPOST=0.988;BRSQ=0.111;LDAF=0.0744;AVGPOST=0.9025;RSQ=0.4564;ERATE=0.0028;THETA=0.0035;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 144928505 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.666;LDAF=0.0338;AVGPOST=0.9821;RSQ=0.7983;ERATE=0.0086;THETA=0.0008;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 144929071 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.737;LDAF=0.0034;AVGPOST=0.9969;RSQ=0.6782;ERATE=0.0013;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144929096 . CTGT C 74 PASS INDEL;BAVGPOST=0.996;BRSQ=0.262;LDAF=0.0200;AVGPOST=0.9664;RSQ=0.3494;ERATE=0.0015;THETA=0.0060;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 144929934 rs113412371 TTGAC T 11986 PASS INDEL;BAVGPOST=0.971;BRSQ=0.799;LDAF=0.1050;AVGPOST=0.9607;RSQ=0.8226;ERATE=0.0159;THETA=0.0014;AC=203;AN=2184 GT:DS:GL:BD 0.09294872 0 1 144930544 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0042;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144930562 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0164;AVGPOST=0.9999;RSQ=0.9963;ERATE=0.0022;THETA=0.0026;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 144930569 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144930571 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.171;LDAF=0.5001;AVGPOST=0.9994;RSQ=0.1654;ERATE=0.0038;THETA=0.0032;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144930596 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.626;LDAF=0.5003;AVGPOST=0.9995;RSQ=0.2678;ERATE=0.0023;THETA=0.0026;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144930638 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9499;ERATE=0.0004;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144930647 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144930740 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144930756 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0012;THETA=0.0035;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 144930779 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144930787 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144930790 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0106;AVGPOST=0.9997;RSQ=0.9887;ERATE=0.0004;THETA=0.0008;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 144930816 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144930940 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.554;LDAF=0.4998;AVGPOST=0.9993;RSQ=0.2060;ERATE=0.0028;THETA=0.0017;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144931087 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.1583;AVGPOST=0.9979;RSQ=0.9932;ERATE=0.0008;THETA=0.0050;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 144931218 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144931251 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0010;THETA=0.0021;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144931330 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.5000;AVGPOST=0.9999;RSQ=0.0999;ERATE=0.0003;THETA=0.0008;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144931387 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9705;ERATE=0.0037;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 144931392 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.5000;AVGPOST=0.9999;RSQ=0.0999;ERATE=0.0003;THETA=0.0010;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144931412 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144931445 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144931461 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.2016;AVGPOST=0.9979;RSQ=0.9933;ERATE=0.0008;THETA=0.0074;AC=439;AN=2184 GT:DS:GL:BD 0.20100732 0 1 144931470 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.980;LDAF=0.1230;AVGPOST=0.9974;RSQ=0.9887;ERATE=0.0518;THETA=0.0020;AC=268;AN=2184 GT:DS:GL:BD 0.12271062 0 1 144931500 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144931562 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144931581 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.983;LDAF=0.0770;AVGPOST=0.9980;RSQ=0.9892;ERATE=0.0004;THETA=0.0006;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 144931597 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144931607 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0183;AVGPOST=0.9999;RSQ=0.9975;ERATE=0.0004;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 144931626 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0101;AVGPOST=1.0000;RSQ=0.9978;ERATE=0.0039;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 144931660 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.397;LDAF=0.0032;AVGPOST=0.9956;RSQ=0.4834;ERATE=0.0011;THETA=0.0039;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144931699 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0028;AVGPOST=0.9996;RSQ=0.9407;ERATE=0.0023;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 144931721 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0005;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144931727 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.947;LDAF=0.2849;AVGPOST=0.9904;RSQ=0.9728;ERATE=0.0005;THETA=0.0023;AC=623;AN=2184 GT:DS:GL:BD 0.28525642 0 1 144931737 . CGAG C 36 PASS INDEL;BAVGPOST=0.976;BRSQ=0.109;LDAF=0.0641;AVGPOST=0.9004;RSQ=0.3509;ERATE=0.0067;THETA=0.0072;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 144931739 rs3839010 A AGGC 1613 PASS INDEL;BAVGPOST=0.946;BRSQ=0.506;LDAF=0.0843;AVGPOST=0.9154;RSQ=0.5542;ERATE=0.0057;THETA=0.0075;AC=135;AN=2184 GT:DS:GL:BD 0.06181319 0 1 144931870 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.837;LDAF=0.1965;AVGPOST=0.9569;RSQ=0.8701;ERATE=0.0044;THETA=0.0108;AC=431;AN=2184 GT:DS:GL:BD 0.19734432 0 1 144931873 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.943;BRSQ=0.723;LDAF=0.1110;AVGPOST=0.9555;RSQ=0.8107;ERATE=0.0038;THETA=0.0015;AC=230;AN=2184 GT:DS:GL:BD 0.10531136 0 1 144931912 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.839;LDAF=0.0160;AVGPOST=0.9965;RSQ=0.9082;ERATE=0.0005;THETA=0.0111;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 144932003 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.818;LDAF=0.0451;AVGPOST=0.9878;RSQ=0.8960;ERATE=0.0008;THETA=0.0016;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 144932065 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.934;LDAF=0.0184;AVGPOST=0.9957;RSQ=0.9059;ERATE=0.0005;THETA=0.0047;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 144932083 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.958;BRSQ=0.665;LDAF=0.0727;AVGPOST=0.9565;RSQ=0.7488;ERATE=0.0059;THETA=0.0010;AC=131;AN=2184 GT:DS:GL:BD 0.05998169 0 1 144932113 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.652;LDAF=0.0021;AVGPOST=0.9968;RSQ=0.4335;ERATE=0.0006;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144932130 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.3676;ERATE=0.0004;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144932145 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.779;LDAF=0.0029;AVGPOST=0.9970;RSQ=0.5735;ERATE=0.0008;THETA=0.0075;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144932151 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.932;BRSQ=0.776;LDAF=0.2398;AVGPOST=0.9468;RSQ=0.8502;ERATE=0.0042;THETA=0.0162;AC=508;AN=2184 GT:DS:GL:BD 0.23260073 0 1 144932220 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.937;BRSQ=0.771;LDAF=0.1689;AVGPOST=0.9392;RSQ=0.8078;ERATE=0.0143;THETA=0.0043;AC=345;AN=2184 GT:DS:GL:BD 0.15796703 0 1 144932401 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.907;BRSQ=0.692;LDAF=0.3311;AVGPOST=0.9303;RSQ=0.7941;ERATE=0.0122;THETA=0.0069;AC=706;AN=2184 GT:DS:GL:BD 0.32326007 0 1 144932419 . TC T 234 PASS INDEL;BAVGPOST=0.990;BRSQ=0.344;LDAF=0.0416;AVGPOST=0.9415;RSQ=0.4260;ERATE=0.0031;THETA=0.0011;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 144932568 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.642;LDAF=0.0039;AVGPOST=0.9977;RSQ=0.7439;ERATE=0.0005;THETA=0.0102;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 144932595 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.674;LDAF=0.0192;AVGPOST=0.9835;RSQ=0.6635;ERATE=0.0038;THETA=0.0022;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 144932749 . TGAGA T 8144 PASS INDEL;BAVGPOST=0.990;BRSQ=0.896;LDAF=0.0584;AVGPOST=0.9900;RSQ=0.9287;ERATE=0.0020;THETA=0.0093;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 144933338 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0043;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144933538 . GC G 38 PASS INDEL;BAVGPOST=0.988;BRSQ=0.156;LDAF=0.0294;AVGPOST=0.9510;RSQ=0.3363;ERATE=0.0022;THETA=0.0086;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 144933737 . T TG 38 PASS INDEL;BAVGPOST=0.974;BRSQ=0.127;LDAF=0.0707;AVGPOST=0.8806;RSQ=0.2989;ERATE=0.0056;THETA=0.0035;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 144933754 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.877;LDAF=0.0819;AVGPOST=0.9759;RSQ=0.8746;ERATE=0.0032;THETA=0.0036;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 144933848 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.938;LDAF=0.0261;AVGPOST=0.9961;RSQ=0.9416;ERATE=0.0053;THETA=0.0050;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 144934029 rs71582771 CAT C 24521 PASS INDEL;BAVGPOST=0.990;BRSQ=0.955;LDAF=0.1444;AVGPOST=0.9895;RSQ=0.9646;ERATE=0.0004;THETA=0.0106;AC=306;AN=2184 GT:DS:GL:BD 0.14010990 0 1 144934172 . AT A 33 PASS INDEL;BAVGPOST=0.995;BRSQ=0.158;LDAF=0.0221;AVGPOST=0.9599;RSQ=0.2292;ERATE=0.0023;THETA=0.0083;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 144934222 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0106;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144934272 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.969;LDAF=0.0580;AVGPOST=0.9957;RSQ=0.9720;ERATE=0.0004;THETA=0.0067;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 144934774 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8090;ERATE=0.0003;THETA=0.0084;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144935054 . AAC A 317 PASS INDEL;BAVGPOST=0.986;BRSQ=0.408;LDAF=0.0489;AVGPOST=0.9310;RSQ=0.4143;ERATE=0.0052;THETA=0.0026;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 144935104 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7024;ERATE=0.0004;THETA=0.0060;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144935127 . TATATA T 86 PASS INDEL;BAVGPOST=0.980;BRSQ=0.081;LDAF=0.0111;AVGPOST=0.9806;RSQ=0.2729;ERATE=0.0013;THETA=0.0049;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144935268 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7117;ERATE=0.0003;THETA=0.0039;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144935307 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6311;ERATE=0.0005;THETA=0.0129;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144935815 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.877;LDAF=0.0128;AVGPOST=0.9967;RSQ=0.9037;ERATE=0.0005;THETA=0.0032;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 144936100 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.5997;ERATE=0.0005;THETA=0.0118;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144936105 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0049;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144936488 . CAT C 97 PASS INDEL;BAVGPOST=0.997;BRSQ=0.370;LDAF=0.0373;AVGPOST=0.9326;RSQ=0.2506;ERATE=0.0035;THETA=0.0062;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 144936581 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.9099;ERATE=0.0004;THETA=0.0028;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 144936864 . TGTA T 1165 PASS INDEL;BAVGPOST=0.958;BRSQ=0.257;LDAF=0.1194;AVGPOST=0.8166;RSQ=0.2963;ERATE=0.0035;THETA=0.0026;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 144936947 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0050;AVGPOST=0.9994;RSQ=0.9500;ERATE=0.0019;THETA=0.0019;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 144937164 . A AG 6 PASS INDEL;BAVGPOST=0.997;BRSQ=0.291;LDAF=0.0305;AVGPOST=0.9480;RSQ=0.2989;ERATE=0.0022;THETA=0.0077;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 144937886 . C CT 1431 PASS INDEL;BAVGPOST=0.957;BRSQ=0.381;LDAF=0.0678;AVGPOST=0.9132;RSQ=0.4148;ERATE=0.0081;THETA=0.0075;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 144938118 . A AT 4187 PASS INDEL;BAVGPOST=0.992;BRSQ=0.923;LDAF=0.0568;AVGPOST=0.9913;RSQ=0.9316;ERATE=0.0009;THETA=0.0088;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 144938210 . AC A 92 PASS INDEL;BAVGPOST=0.996;BRSQ=0.252;LDAF=0.0314;AVGPOST=0.9428;RSQ=0.2610;ERATE=0.0019;THETA=0.0017;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 144938320 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.979;LDAF=0.9575;AVGPOST=0.9951;RSQ=0.9558;ERATE=0.0006;THETA=0.0052;AC=2090;AN=2184 GT:DS:GL:BD 0.95695972 1 1 144939618 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.900;LDAF=0.9860;AVGPOST=0.9960;RSQ=0.8913;ERATE=0.0018;THETA=0.0011;AC=2155;AN=2184 GT:DS:GL:BD 0.98672163 1 1 144939721 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.904;LDAF=0.0875;AVGPOST=0.9791;RSQ=0.8920;ERATE=0.0007;THETA=0.0012;AC=184;AN=2184 GT:DS:GL:BD 0.08424909 0 1 144939820 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.906;LDAF=0.0694;AVGPOST=0.9871;RSQ=0.9242;ERATE=0.0031;THETA=0.0010;AC=151;AN=2184 GT:DS:GL:BD 0.06913920 0 1 144940283 . CA C 268 PASS INDEL;BAVGPOST=0.977;BRSQ=0.188;LDAF=0.0720;AVGPOST=0.8787;RSQ=0.2574;ERATE=0.0066;THETA=0.0012;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 144940846 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.887;LDAF=0.8387;AVGPOST=0.9719;RSQ=0.9068;ERATE=0.0237;THETA=0.0011;AC=1837;AN=2184 GT:DS:GL:BD 0.84111720 1 1 144940914 . C CT 171 PASS INDEL;BAVGPOST=0.992;BRSQ=0.259;LDAF=0.1425;AVGPOST=0.7986;RSQ=0.3475;ERATE=0.0055;THETA=0.0018;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 144941910 . A ATG 49 PASS INDEL;BAVGPOST=0.999;BRSQ=0.442;LDAF=0.0558;AVGPOST=0.9139;RSQ=0.3643;ERATE=0.0026;THETA=0.0043;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 144943071 . TC T 19 PASS INDEL;BAVGPOST=0.996;BRSQ=0.211;LDAF=0.0490;AVGPOST=0.9122;RSQ=0.2376;ERATE=0.0032;THETA=0.0056;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 144944033 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0004;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144944261 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144944536 . GAAAT G 486 PASS INDEL;BAVGPOST=0.989;BRSQ=0.203;LDAF=0.0134;AVGPOST=0.9793;RSQ=0.3309;ERATE=0.0010;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 144944850 . C CA 8 PASS INDEL;BAVGPOST=0.997;BRSQ=0.286;LDAF=0.0513;AVGPOST=0.9125;RSQ=0.2631;ERATE=0.0018;THETA=0.0043;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 144944957 . C CT 8268 PASS INDEL;BAVGPOST=0.997;BRSQ=0.976;LDAF=0.0591;AVGPOST=0.9962;RSQ=0.9730;ERATE=0.0004;THETA=0.0061;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 144945033 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.943;LDAF=0.0445;AVGPOST=0.9938;RSQ=0.9451;ERATE=0.0007;THETA=0.0010;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 144945434 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0051;AVGPOST=0.9986;RSQ=0.8812;ERATE=0.0004;THETA=0.0025;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 144945447 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.918;LDAF=0.0559;AVGPOST=0.9922;RSQ=0.9440;ERATE=0.0006;THETA=0.0015;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 144945556 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0003;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144945563 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7286;ERATE=0.0003;THETA=0.0037;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144945941 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.9584;AVGPOST=0.9961;RSQ=0.9639;ERATE=0.0004;THETA=0.0103;AC=2092;AN=2184 GT:DS:GL:BD 0.95787543 1 1 144945951 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.676;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0048;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144946571 . AG A 106 PASS INDEL;BAVGPOST=0.993;BRSQ=0.113;LDAF=0.0147;AVGPOST=0.9744;RSQ=0.2476;ERATE=0.0012;THETA=0.0027;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 144946575 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0105;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0059;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 144946701 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0178;AVGPOST=0.9999;RSQ=0.9975;ERATE=0.0010;THETA=0.0005;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 144946768 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.5001;AVGPOST=0.9999;RSQ=0.1499;ERATE=0.0012;THETA=0.0100;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 144946778 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0013;AVGPOST=1.0000;RSQ=0.9839;ERATE=0.0009;THETA=0.0048;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144947073 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8857;ERATE=0.0004;THETA=0.0061;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144947304 . TG T 139 PASS INDEL;BAVGPOST=0.998;BRSQ=0.366;LDAF=0.0285;AVGPOST=0.9497;RSQ=0.2629;ERATE=0.0014;THETA=0.0106;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 144947705 rs111645176 G GT 2514 PASS INDEL;BAVGPOST=0.983;BRSQ=0.616;LDAF=0.0582;AVGPOST=0.9188;RSQ=0.3824;ERATE=0.0014;THETA=0.0020;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 144947771 . A AG 24700 PASS INDEL;BAVGPOST=0.959;BRSQ=0.832;LDAF=0.1547;AVGPOST=0.9601;RSQ=0.8733;ERATE=0.0015;THETA=0.0243;AC=319;AN=2184 GT:DS:GL:BD 0.14606227 0 1 144948378 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.919;LDAF=0.0117;AVGPOST=0.9968;RSQ=0.8971;ERATE=0.0032;THETA=0.0119;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 144949382 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.844;BRSQ=0.549;LDAF=0.3229;AVGPOST=0.8829;RSQ=0.6697;ERATE=0.0046;THETA=0.0141;AC=680;AN=2184 GT:DS:GL:BD 0.31135532 0 1 144949740 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.943;BRSQ=0.689;LDAF=0.1057;AVGPOST=0.9245;RSQ=0.6771;ERATE=0.0083;THETA=0.0052;AC=184;AN=2184 GT:DS:GL:BD 0.08424909 0 1 144950256 . A AAT 1275 PASS INDEL;BAVGPOST=0.963;BRSQ=0.399;LDAF=0.0594;AVGPOST=0.9129;RSQ=0.3499;ERATE=0.0054;THETA=0.0065;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 144951330 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0004;THETA=0.0120;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144951405 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.656;LDAF=0.0283;AVGPOST=0.9736;RSQ=0.6388;ERATE=0.0006;THETA=0.0077;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 144951408 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.960;LDAF=0.9473;AVGPOST=0.9820;RSQ=0.8805;ERATE=0.0006;THETA=0.0193;AC=2076;AN=2184 GT:DS:GL:BD 0.95054942 1 1 144953047 . GTTAT G 367 PASS INDEL;BAVGPOST=0.992;BRSQ=0.139;LDAF=0.0184;AVGPOST=0.9670;RSQ=0.2447;ERATE=0.0016;THETA=0.0188;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 144953994 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.817;LDAF=0.0860;AVGPOST=0.9653;RSQ=0.8216;ERATE=0.0007;THETA=0.0283;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 144954045 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.909;BRSQ=0.584;LDAF=0.1335;AVGPOST=0.9141;RSQ=0.6779;ERATE=0.0056;THETA=0.0241;AC=231;AN=2184 GT:DS:GL:BD 0.10576923 0 1 144954117 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.907;BRSQ=0.789;LDAF=0.6270;AVGPOST=0.8714;RSQ=0.7350;ERATE=0.0063;THETA=0.0129;AC=1382;AN=2184 GT:DS:GL:BD 0.63278389 1 1 144954149 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.689;LDAF=0.0096;AVGPOST=0.9927;RSQ=0.7214;ERATE=0.0008;THETA=0.0152;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 144954150 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0023;AVGPOST=0.9970;RSQ=0.5548;ERATE=0.0005;THETA=0.0121;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 144954212 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.535;LDAF=0.0051;AVGPOST=0.9953;RSQ=0.6288;ERATE=0.0006;THETA=0.0113;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 144954354 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0195;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144954424 . AT A 384 PASS INDEL;BAVGPOST=0.993;BRSQ=0.396;LDAF=0.0134;AVGPOST=0.9807;RSQ=0.3531;ERATE=0.0023;THETA=0.0108;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 144954705 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.721;LDAF=0.0037;AVGPOST=0.9983;RSQ=0.8062;ERATE=0.0004;THETA=0.0036;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 144954750 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0220;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144954848 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.699;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6975;ERATE=0.0004;THETA=0.0173;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144954851 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.889;LDAF=0.1576;AVGPOST=0.9670;RSQ=0.9072;ERATE=0.0016;THETA=0.0047;AC=321;AN=2184 GT:DS:GL:BD 0.14697802 0 1 144954955 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.713;LDAF=0.0039;AVGPOST=0.9971;RSQ=0.6974;ERATE=0.0005;THETA=0.0053;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 144954974 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.771;LDAF=0.0101;AVGPOST=0.9930;RSQ=0.7414;ERATE=0.0006;THETA=0.0013;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 144954989 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.774;LDAF=0.0096;AVGPOST=0.9946;RSQ=0.7864;ERATE=0.0005;THETA=0.0105;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 144955050 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0069;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144957011 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0004;THETA=0.0139;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144957037 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0004;THETA=0.0097;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144957219 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0144;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144957696 . AC A 442 PASS INDEL;BAVGPOST=0.948;BRSQ=0.159;LDAF=0.0250;AVGPOST=0.9625;RSQ=0.3651;ERATE=0.0016;THETA=0.0123;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 144957703 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.918;BRSQ=0.826;LDAF=0.2758;AVGPOST=0.9211;RSQ=0.8548;ERATE=0.0009;THETA=0.0080;AC=575;AN=2184 GT:DS:GL:BD 0.26327839 0 1 144957709 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5491;ERATE=0.0004;THETA=0.0048;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144957815 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.956;BRSQ=0.891;LDAF=0.2320;AVGPOST=0.9517;RSQ=0.9028;ERATE=0.0009;THETA=0.0100;AC=493;AN=2184 GT:DS:GL:BD 0.22573259 0 1 144960731 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.563;LDAF=0.0061;AVGPOST=0.9926;RSQ=0.5021;ERATE=0.0008;THETA=0.0189;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 144960880 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.766;BRSQ=0.158;LDAF=0.2138;AVGPOST=0.6984;RSQ=0.2375;ERATE=0.0246;THETA=0.0067;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 144960890 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.557;BRSQ=0.077;LDAF=0.3114;AVGPOST=0.6316;RSQ=0.2637;ERATE=0.0224;THETA=0.0049;AC=355;AN=2184 GT:DS:GL:BD 0.16254579 0 1 144960891 rs11459582 G GA 657 PASS INDEL;BAVGPOST=0.784;BRSQ=0.090;LDAF=0.1644;AVGPOST=0.7486;RSQ=0.2361;ERATE=0.0091;THETA=0.0050;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 144961063 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.910;LDAF=0.1167;AVGPOST=0.9861;RSQ=0.9422;ERATE=0.0026;THETA=0.0069;AC=255;AN=2184 GT:DS:GL:BD 0.11675824 0 1 144961628 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.482;LDAF=0.0071;AVGPOST=0.9922;RSQ=0.5578;ERATE=0.0008;THETA=0.0131;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 144961656 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.839;BRSQ=0.429;LDAF=0.2258;AVGPOST=0.8080;RSQ=0.4828;ERATE=0.0374;THETA=0.0116;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 144963546 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.944;BRSQ=0.795;LDAF=0.1500;AVGPOST=0.9500;RSQ=0.8441;ERATE=0.0032;THETA=0.0062;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 144964335 . CAAAT C 2863 PASS INDEL;BAVGPOST=0.936;BRSQ=0.601;LDAF=0.0879;AVGPOST=0.9376;RSQ=0.6790;ERATE=0.0075;THETA=0.0110;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 144964360 . AC A 1206 PASS INDEL;BAVGPOST=0.950;BRSQ=0.483;LDAF=0.0629;AVGPOST=0.9305;RSQ=0.5061;ERATE=0.0160;THETA=0.0122;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 144964380 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.611;LDAF=0.0085;AVGPOST=0.9925;RSQ=0.6514;ERATE=0.0008;THETA=0.0075;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 144964882 rs5777497 T TC 128 PASS INDEL;BAVGPOST=0.990;BRSQ=0.434;LDAF=0.0173;AVGPOST=0.9764;RSQ=0.4116;ERATE=0.0028;THETA=0.0075;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 144964965 rs72349151 CTCTA C 2920 PASS INDEL;BAVGPOST=0.910;BRSQ=0.486;LDAF=0.1170;AVGPOST=0.8899;RSQ=0.5264;ERATE=0.0204;THETA=0.0134;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 144965145 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0041;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144965840 . TGC T 10946 PASS INDEL;BAVGPOST=0.798;BRSQ=0.667;LDAF=0.3761;AVGPOST=0.8027;RSQ=0.7107;ERATE=0.0021;THETA=0.0098;AC=795;AN=2184 GT:DS:GL:BD 0.36401099 0 1 144967085 . AAAAAT A 477 PASS INDEL;BAVGPOST=0.981;BRSQ=0.200;LDAF=0.0161;AVGPOST=0.9743;RSQ=0.2773;ERATE=0.0015;THETA=0.0132;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 144968332 . CAT C 355 PASS INDEL;BAVGPOST=0.988;BRSQ=0.356;LDAF=0.0431;AVGPOST=0.9308;RSQ=0.2959;ERATE=0.0042;THETA=0.0283;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 144969379 . GC G 12 PASS INDEL;BAVGPOST=0.991;BRSQ=0.093;LDAF=0.0298;AVGPOST=0.9471;RSQ=0.2651;ERATE=0.0016;THETA=0.0053;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 144969405 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.780;BRSQ=0.459;LDAF=0.3713;AVGPOST=0.7965;RSQ=0.5513;ERATE=0.0406;THETA=0.0032;AC=690;AN=2184 GT:DS:GL:BD 0.31593406 0 1 144970070 . G GTC 1341 PASS INDEL;BAVGPOST=0.930;BRSQ=0.191;LDAF=0.0683;AVGPOST=0.8909;RSQ=0.2601;ERATE=0.0065;THETA=0.0099;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 144972057 . TG T 55 PASS INDEL;BAVGPOST=0.993;BRSQ=0.112;LDAF=0.0316;AVGPOST=0.9401;RSQ=0.1670;ERATE=0.0013;THETA=0.0124;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 144972216 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.840;BRSQ=0.470;LDAF=0.2189;AVGPOST=0.8396;RSQ=0.5743;ERATE=0.0207;THETA=0.0098;AC=356;AN=2184 GT:DS:GL:BD 0.16300367 0 1 144972424 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7883;ERATE=0.0005;THETA=0.0086;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144972451 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.671;LDAF=0.0032;AVGPOST=0.9982;RSQ=0.7911;ERATE=0.0005;THETA=0.0114;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 144973206 . G GC 372 PASS INDEL;BAVGPOST=0.983;BRSQ=0.335;LDAF=0.0294;AVGPOST=0.9492;RSQ=0.2226;ERATE=0.0056;THETA=0.0195;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 144973821 . A AT 573 PASS INDEL;BAVGPOST=0.986;BRSQ=0.472;LDAF=0.0185;AVGPOST=0.9760;RSQ=0.4276;ERATE=0.0015;THETA=0.0091;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 144974680 . TC T 923 PASS INDEL;BAVGPOST=0.955;BRSQ=0.332;LDAF=0.0485;AVGPOST=0.9324;RSQ=0.3712;ERATE=0.0033;THETA=0.0074;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 144977366 rs59652042 GA G 10251 PASS INDEL;BAVGPOST=0.822;BRSQ=0.617;LDAF=0.2854;AVGPOST=0.8271;RSQ=0.6615;ERATE=0.0280;THETA=0.0177;AC=531;AN=2184 GT:DS:GL:BD 0.24313186 0 1 144977494 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.930;BRSQ=0.802;LDAF=0.2115;AVGPOST=0.9340;RSQ=0.8261;ERATE=0.0011;THETA=0.0394;AC=427;AN=2184 GT:DS:GL:BD 0.19551282 0 1 144979416 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9009;ERATE=0.0003;THETA=0.0195;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 144980906 . CACCTT C 1272 PASS INDEL;BAVGPOST=0.974;BRSQ=0.315;LDAF=0.0318;AVGPOST=0.9527;RSQ=0.3227;ERATE=0.0049;THETA=0.0082;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 144983840 . TCTTA T 718 PASS INDEL;BAVGPOST=0.826;BRSQ=0.061;LDAF=0.1216;AVGPOST=0.7931;RSQ=0.1896;ERATE=0.0062;THETA=0.0132;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 144985646 . G GA 298 PASS INDEL;BAVGPOST=0.912;BRSQ=0.164;LDAF=0.1201;AVGPOST=0.8047;RSQ=0.2231;ERATE=0.0152;THETA=0.0146;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 144985806 rs56998788 G GC 397 PASS INDEL;BAVGPOST=0.971;BRSQ=0.290;LDAF=0.0282;AVGPOST=0.9590;RSQ=0.3368;ERATE=0.0032;THETA=0.0315;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 144985880 . T TG 72 PASS INDEL;BAVGPOST=0.984;BRSQ=0.205;LDAF=0.0831;AVGPOST=0.8573;RSQ=0.2293;ERATE=0.0060;THETA=0.0166;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 144986920 . T TG 15 PASS INDEL;BAVGPOST=0.994;BRSQ=0.137;LDAF=0.0476;AVGPOST=0.9103;RSQ=0.1314;ERATE=0.0055;THETA=0.0227;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 144987001 . T TTG 309 PASS INDEL;BAVGPOST=0.997;BRSQ=0.500;LDAF=0.0131;AVGPOST=0.9788;RSQ=0.2828;ERATE=0.0012;THETA=0.0068;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 144988320 . AG A 1244 PASS INDEL;BAVGPOST=0.933;BRSQ=0.199;LDAF=0.0973;AVGPOST=0.8378;RSQ=0.2169;ERATE=0.0066;THETA=0.0182;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 144990650 rs112339236 TA T 1696 PASS INDEL;BAVGPOST=0.987;BRSQ=0.673;LDAF=0.0194;AVGPOST=0.9881;RSQ=0.7302;ERATE=0.0032;THETA=0.0136;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 144990651 rs112339236 A AT 12906 PASS INDEL;BAVGPOST=0.957;BRSQ=0.826;LDAF=0.1849;AVGPOST=0.9589;RSQ=0.8709;ERATE=0.0069;THETA=0.0310;AC=377;AN=2184 GT:DS:GL:BD 0.17261904 0 1 144992007 . TC T 1083 PASS INDEL;BAVGPOST=0.965;BRSQ=0.400;LDAF=0.0512;AVGPOST=0.9267;RSQ=0.3591;ERATE=0.0047;THETA=0.0084;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 144994159 rs57198963 AC A 18959 PASS INDEL;BAVGPOST=0.967;BRSQ=0.872;LDAF=0.2367;AVGPOST=0.9665;RSQ=0.9030;ERATE=0.0130;THETA=0.0194;AC=502;AN=2184 GT:DS:GL:BD 0.22985348 0 1 144994217 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0034;AVGPOST=0.9990;RSQ=0.8789;ERATE=0.0005;THETA=0.0085;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 144994223 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.846;LDAF=0.0051;AVGPOST=0.9982;RSQ=0.8678;ERATE=0.0006;THETA=0.0101;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 144994228 . T TC 123 PASS INDEL;BAVGPOST=0.964;BRSQ=0.130;LDAF=0.0842;AVGPOST=0.8548;RSQ=0.1879;ERATE=0.0103;THETA=0.0091;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 144994481 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.919;LDAF=0.0114;AVGPOST=0.9981;RSQ=0.9359;ERATE=0.0009;THETA=0.0054;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 144994658 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.4987;AVGPOST=0.9996;RSQ=0.8919;ERATE=0.0036;THETA=0.0140;AC=1090;AN=2184 GT:DS:GL:BD 0.49908423 0 1 144994670 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0077;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 144994740 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0109;AVGPOST=0.9989;RSQ=0.9701;ERATE=0.0009;THETA=0.0073;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 144995277 rs11305863 AG A 20824 PASS INDEL;BAVGPOST=0.964;BRSQ=0.884;LDAF=0.2125;AVGPOST=0.9686;RSQ=0.9083;ERATE=0.0097;THETA=0.0155;AC=447;AN=2184 GT:DS:GL:BD 0.20467032 0 1 144995521 . T TA 71 PASS INDEL;BAVGPOST=0.997;BRSQ=0.257;LDAF=0.0312;AVGPOST=0.9420;RSQ=0.2074;ERATE=0.0026;THETA=0.0132;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 144995541 rs60566131 GC G 21252 PASS INDEL;BAVGPOST=0.958;BRSQ=0.844;LDAF=0.2162;AVGPOST=0.9530;RSQ=0.8600;ERATE=0.0069;THETA=0.0299;AC=451;AN=2184 GT:DS:GL:BD 0.20650183 0 1 144998899 . CT C 155 PASS INDEL;BAVGPOST=0.986;BRSQ=0.271;LDAF=0.0798;AVGPOST=0.8572;RSQ=0.1949;ERATE=0.0039;THETA=0.0067;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 145000330 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8445;ERATE=0.0004;THETA=0.0134;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145000354 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.959;BRSQ=0.851;LDAF=0.1483;AVGPOST=0.9679;RSQ=0.8887;ERATE=0.0052;THETA=0.0136;AC=316;AN=2184 GT:DS:GL:BD 0.14468865 0 1 145007461 rs72033425 G GT 143 PASS INDEL;BAVGPOST=0.989;BRSQ=0.558;LDAF=0.0162;AVGPOST=0.9846;RSQ=0.6308;ERATE=0.0019;THETA=0.0276;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 145007670 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.936;BRSQ=0.671;LDAF=0.9050;AVGPOST=0.9452;RSQ=0.7498;ERATE=0.0050;THETA=0.0277;AC=2000;AN=2184 GT:DS:GL:BD 0.91575092 1 1 145008775 rs10719132 TG T 25828 PASS INDEL;BAVGPOST=0.972;BRSQ=0.900;LDAF=0.2203;AVGPOST=0.9711;RSQ=0.9153;ERATE=0.0108;THETA=0.0230;AC=472;AN=2184 GT:DS:GL:BD 0.21611722 0 1 145009475 . CTG C 123 PASS INDEL;BAVGPOST=0.994;BRSQ=0.226;LDAF=0.0502;AVGPOST=0.9096;RSQ=0.2138;ERATE=0.0036;THETA=0.0267;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 145010472 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.762;LDAF=0.9455;AVGPOST=0.9759;RSQ=0.8204;ERATE=0.0019;THETA=0.0244;AC=2068;AN=2184 GT:DS:GL:BD 0.94688642 1 1 145014089 . CA C 33 PASS INDEL;BAVGPOST=0.992;BRSQ=0.107;LDAF=0.0610;AVGPOST=0.8847;RSQ=0.1490;ERATE=0.0020;THETA=0.0318;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145014324 . AC A 2185 PASS INDEL;BAVGPOST=0.994;BRSQ=0.903;LDAF=0.0363;AVGPOST=0.9928;RSQ=0.9168;ERATE=0.0011;THETA=0.0295;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 145015844 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0293;AVGPOST=0.9992;RSQ=0.9893;ERATE=0.0007;THETA=0.0047;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 145015850 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0154;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145015877 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.1922;AVGPOST=0.9974;RSQ=0.9918;ERATE=0.0021;THETA=0.0061;AC=419;AN=2184 GT:DS:GL:BD 0.19184981 0 1 145015885 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0085;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145016020 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.9356;AVGPOST=0.9981;RSQ=0.9859;ERATE=0.0056;THETA=0.0136;AC=2044;AN=2184 GT:DS:GL:BD 0.93589741 1 1 145016649 . TG T 52 PASS INDEL;BAVGPOST=0.998;BRSQ=0.362;LDAF=0.0235;AVGPOST=0.9570;RSQ=0.2176;ERATE=0.0013;THETA=0.0164;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145017556 . TAAG T 25 PASS INDEL;BAVGPOST=0.999;BRSQ=0.390;LDAF=0.0125;AVGPOST=0.9799;RSQ=0.3486;ERATE=0.0012;THETA=0.0088;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145017893 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.877;LDAF=0.0350;AVGPOST=0.9899;RSQ=0.8900;ERATE=0.0044;THETA=0.0097;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 145017964 . C CT 116 PASS INDEL;BAVGPOST=0.994;BRSQ=0.124;LDAF=0.0602;AVGPOST=0.8972;RSQ=0.2520;ERATE=0.0037;THETA=0.0045;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 145021068 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0102;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145021126 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0161;AVGPOST=0.9989;RSQ=0.9776;ERATE=0.0036;THETA=0.0043;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 145022499 . CTGTT C 156 PASS INDEL;BAVGPOST=0.994;BRSQ=0.334;LDAF=0.0363;AVGPOST=0.9339;RSQ=0.2105;ERATE=0.0044;THETA=0.0138;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145022709 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.662;LDAF=0.0026;AVGPOST=0.9972;RSQ=0.6191;ERATE=0.0012;THETA=0.0087;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145022872 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.930;BRSQ=0.678;LDAF=0.9092;AVGPOST=0.9452;RSQ=0.7415;ERATE=0.0034;THETA=0.0131;AC=2015;AN=2184 GT:DS:GL:BD 0.92261904 1 1 145023144 . G GT 48 PASS INDEL;BAVGPOST=0.996;BRSQ=0.421;LDAF=0.0163;AVGPOST=0.9727;RSQ=0.2776;ERATE=0.0022;THETA=0.0095;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145025970 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.831;LDAF=0.9553;AVGPOST=0.9856;RSQ=0.8691;ERATE=0.0005;THETA=0.0155;AC=2085;AN=2184 GT:DS:GL:BD 0.95467031 1 1 145026794 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.813;BRSQ=0.547;LDAF=0.3204;AVGPOST=0.8189;RSQ=0.6260;ERATE=0.0251;THETA=0.0257;AC=596;AN=2184 GT:DS:GL:BD 0.27289379 0 1 145026821 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.843;BRSQ=0.666;LDAF=0.5034;AVGPOST=0.8544;RSQ=0.7363;ERATE=0.0010;THETA=0.0010;AC=1084;AN=2184 GT:DS:GL:BD 0.49633700 0 1 145026833 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.843;BRSQ=0.666;LDAF=0.5046;AVGPOST=0.8541;RSQ=0.7366;ERATE=0.0005;THETA=0.0099;AC=1082;AN=2184 GT:DS:GL:BD 0.49542123 0 1 145026891 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.510;LDAF=0.0438;AVGPOST=0.9560;RSQ=0.5488;ERATE=0.0036;THETA=0.0172;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 145026951 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.495;LDAF=0.0061;AVGPOST=0.9901;RSQ=0.3212;ERATE=0.0009;THETA=0.0122;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145028027 rs60060263 TC T 1258 PASS INDEL;BAVGPOST=0.992;BRSQ=0.811;LDAF=0.0241;AVGPOST=0.9916;RSQ=0.8512;ERATE=0.0012;THETA=0.0130;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 145029359 . CT C 190 PASS INDEL;BAVGPOST=0.990;BRSQ=0.217;LDAF=0.0291;AVGPOST=0.9455;RSQ=0.1653;ERATE=0.0016;THETA=0.0092;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145030338 . TG T 496 PASS INDEL;BAVGPOST=0.988;BRSQ=0.460;LDAF=0.0340;AVGPOST=0.9465;RSQ=0.3104;ERATE=0.0048;THETA=0.0034;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 145031017 rs113224739 CG C 75 PASS INDEL;BAVGPOST=0.994;BRSQ=0.173;LDAF=0.0588;AVGPOST=0.8915;RSQ=0.1745;ERATE=0.0024;THETA=0.0195;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 145031698 . GA G 130 PASS INDEL;BAVGPOST=0.993;BRSQ=0.272;LDAF=0.0310;AVGPOST=0.9447;RSQ=0.2677;ERATE=0.0023;THETA=0.0040;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 145035743 . A AT 5 PASS INDEL;BAVGPOST=0.990;BRSQ=0.147;LDAF=0.0667;AVGPOST=0.8770;RSQ=0.1508;ERATE=0.0056;THETA=0.0080;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145037048 . CA C 104 PASS INDEL;BAVGPOST=0.996;BRSQ=0.367;LDAF=0.0133;AVGPOST=0.9772;RSQ=0.2509;ERATE=0.0017;THETA=0.0088;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145037404 rs113263889 ATT A 9787 PASS INDEL;BAVGPOST=0.986;BRSQ=0.918;LDAF=0.0810;AVGPOST=0.9881;RSQ=0.9337;ERATE=0.0010;THETA=0.0117;AC=170;AN=2184 GT:DS:GL:BD 0.07783883 0 1 145037578 . CTT C 3098 PASS INDEL;BAVGPOST=0.981;BRSQ=0.795;LDAF=0.0463;AVGPOST=0.9875;RSQ=0.8830;ERATE=0.0032;THETA=0.0050;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 145038365 . T TC 13 PASS INDEL;BAVGPOST=0.995;BRSQ=0.143;LDAF=0.1156;AVGPOST=0.8101;RSQ=0.2434;ERATE=0.0058;THETA=0.0057;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 145039249 . CT C 81 PASS INDEL;BAVGPOST=0.993;BRSQ=0.271;LDAF=0.0166;AVGPOST=0.9746;RSQ=0.3844;ERATE=0.0010;THETA=0.0138;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 145039779 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.914;LDAF=0.0242;AVGPOST=0.9951;RSQ=0.9242;ERATE=0.0023;THETA=0.0092;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 145039922 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.940;BRSQ=0.708;LDAF=0.1278;AVGPOST=0.9357;RSQ=0.7510;ERATE=0.0036;THETA=0.0065;AC=232;AN=2184 GT:DS:GL:BD 0.10622711 0 1 145041584 . C CA 38 PASS INDEL;BAVGPOST=0.997;BRSQ=0.253;LDAF=0.0267;AVGPOST=0.9501;RSQ=0.1778;ERATE=0.0014;THETA=0.0031;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145042461 . A AC 1128 PASS INDEL;BAVGPOST=0.925;BRSQ=0.159;LDAF=0.0761;AVGPOST=0.8744;RSQ=0.2434;ERATE=0.0054;THETA=0.0047;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 145045135 . CA C 94 PASS INDEL;BAVGPOST=0.988;BRSQ=0.178;LDAF=0.0265;AVGPOST=0.9508;RSQ=0.1678;ERATE=0.0021;THETA=0.0141;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145046245 . GA G 202 PASS INDEL;BAVGPOST=0.975;BRSQ=0.175;LDAF=0.1164;AVGPOST=0.7995;RSQ=0.1932;ERATE=0.0080;THETA=0.0105;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 145047413 . T TA 1015 PASS INDEL;BAVGPOST=0.975;BRSQ=0.379;LDAF=0.0474;AVGPOST=0.9288;RSQ=0.3338;ERATE=0.0032;THETA=0.0105;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 145048535 . C CT 4824 PASS INDEL;BAVGPOST=0.981;BRSQ=0.824;LDAF=0.0599;AVGPOST=0.9806;RSQ=0.8567;ERATE=0.0020;THETA=0.0020;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 145048827 . AG A 325 PASS INDEL;BAVGPOST=0.965;BRSQ=0.160;LDAF=0.0637;AVGPOST=0.8845;RSQ=0.1672;ERATE=0.0029;THETA=0.0134;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145050227 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.846;BRSQ=0.541;LDAF=0.7956;AVGPOST=0.8297;RSQ=0.5843;ERATE=0.0111;THETA=0.0093;AC=1833;AN=2184 GT:DS:GL:BD 0.83928573 1 1 145050238 . TC T 148 PASS INDEL;BAVGPOST=0.988;BRSQ=0.554;LDAF=0.0131;AVGPOST=0.9849;RSQ=0.5178;ERATE=0.0035;THETA=0.0128;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145050847 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.831;BRSQ=0.545;LDAF=0.7844;AVGPOST=0.8462;RSQ=0.6104;ERATE=0.0032;THETA=0.0111;AC=1797;AN=2184 GT:DS:GL:BD 0.82280219 1 1 145053793 rs58399352 T TG 6148 PASS INDEL;BAVGPOST=0.922;BRSQ=0.652;LDAF=0.1636;AVGPOST=0.9006;RSQ=0.6566;ERATE=0.0320;THETA=0.0125;AC=263;AN=2184 GT:DS:GL:BD 0.12042125 0 1 145053798 . G GT 1864 PASS INDEL;BAVGPOST=0.893;BRSQ=0.487;LDAF=0.1449;AVGPOST=0.8710;RSQ=0.5396;ERATE=0.0180;THETA=0.0124;AC=198;AN=2184 GT:DS:GL:BD 0.09065934 0 1 145057178 rs56051269 C CAGA 35331 PASS INDEL;BAVGPOST=0.990;BRSQ=0.960;LDAF=0.1755;AVGPOST=0.9902;RSQ=0.9679;ERATE=0.0038;THETA=0.0070;AC=380;AN=2184 GT:DS:GL:BD 0.17399268 0 1 145057889 rs72434786 CTG C 1415 PASS INDEL;BAVGPOST=0.998;BRSQ=0.911;LDAF=0.0125;AVGPOST=0.9969;RSQ=0.9036;ERATE=0.0011;THETA=0.0160;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 145059338 . CT C 5768 PASS INDEL;BAVGPOST=0.991;BRSQ=0.924;LDAF=0.0655;AVGPOST=0.9905;RSQ=0.9381;ERATE=0.0053;THETA=0.0044;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 145060262 . TA T 145 PASS INDEL;BAVGPOST=0.997;BRSQ=0.627;LDAF=0.0067;AVGPOST=0.9926;RSQ=0.5627;ERATE=0.0012;THETA=0.0235;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145063663 . C CT 475 PASS INDEL;BAVGPOST=0.996;BRSQ=0.740;LDAF=0.0092;AVGPOST=0.9931;RSQ=0.6998;ERATE=0.0040;THETA=0.0019;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 145064398 . G GC 196 PASS INDEL;BAVGPOST=0.995;BRSQ=0.591;LDAF=0.0073;AVGPOST=0.9932;RSQ=0.5950;ERATE=0.0006;THETA=0.0089;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145065945 . AG A 7080 PASS INDEL;BAVGPOST=0.974;BRSQ=0.826;LDAF=0.0795;AVGPOST=0.9734;RSQ=0.8433;ERATE=0.0053;THETA=0.0334;AC=151;AN=2184 GT:DS:GL:BD 0.06913920 0 1 145066544 rs57489174 C CA 1761 PASS INDEL;BAVGPOST=0.980;BRSQ=0.786;LDAF=0.0436;AVGPOST=0.9828;RSQ=0.8386;ERATE=0.0070;THETA=0.0219;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 145069497 . C CA 3003 PASS INDEL;BAVGPOST=0.982;BRSQ=0.846;LDAF=0.0582;AVGPOST=0.9800;RSQ=0.8582;ERATE=0.0007;THETA=0.0318;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 145069710 . CAA C 952 PASS INDEL;BAVGPOST=0.992;BRSQ=0.642;LDAF=0.0178;AVGPOST=0.9806;RSQ=0.5658;ERATE=0.0014;THETA=0.0205;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 145070405 . C CA 1792 PASS INDEL;BAVGPOST=0.998;BRSQ=0.909;LDAF=0.0107;AVGPOST=0.9972;RSQ=0.8806;ERATE=0.0020;THETA=0.0146;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 145071152 . AC A 485 PASS INDEL;BAVGPOST=0.997;BRSQ=0.696;LDAF=0.0071;AVGPOST=0.9943;RSQ=0.6681;ERATE=0.0009;THETA=0.0236;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145072589 . TA T 606 PASS INDEL;BAVGPOST=0.998;BRSQ=0.799;LDAF=0.0057;AVGPOST=0.9970;RSQ=0.7940;ERATE=0.0009;THETA=0.0120;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145075683 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.457;LDAF=0.4991;AVGPOST=0.9846;RSQ=0.3919;ERATE=0.0032;THETA=0.0069;AC=1090;AN=2184 GT:DS:GL:BD 0.49908423 0 1 145075854 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.582;LDAF=0.4980;AVGPOST=0.9959;RSQ=0.5543;ERATE=0.0033;THETA=0.0076;AC=1089;AN=2184 GT:DS:GL:BD 0.49862638 0 1 145075899 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0059;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145075903 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.916;LDAF=0.3183;AVGPOST=0.9778;RSQ=0.9327;ERATE=0.0026;THETA=0.0061;AC=692;AN=2184 GT:DS:GL:BD 0.31684983 0 1 145076613 . C CT 244 PASS INDEL;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0021;AVGPOST=0.9988;RSQ=0.7557;ERATE=0.0005;THETA=0.0091;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145076630 . G GT 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0035;AVGPOST=0.9941;RSQ=0.2840;ERATE=0.0004;THETA=0.0221;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145081632 . A AT 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0043;AVGPOST=0.9941;RSQ=0.4019;ERATE=0.0005;THETA=0.0048;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145081687 . AAG A 123 PASS INDEL;BAVGPOST=0.999;BRSQ=0.605;LDAF=0.0022;AVGPOST=0.9965;RSQ=0.3324;ERATE=0.0005;THETA=0.0170;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145082983 . AT A 17 PASS INDEL;BAVGPOST=0.999;BRSQ=0.599;LDAF=0.0029;AVGPOST=0.9965;RSQ=0.5143;ERATE=0.0009;THETA=0.0128;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145083093 . GTTC G 616 PASS INDEL;BAVGPOST=0.991;BRSQ=0.525;LDAF=0.0120;AVGPOST=0.9864;RSQ=0.5102;ERATE=0.0019;THETA=0.0096;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145083397 . G GGTT 797 PASS INDEL;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0042;AVGPOST=0.9990;RSQ=0.9075;ERATE=0.0004;THETA=0.0127;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145084887 . A AT 863 PASS INDEL;BAVGPOST=0.991;BRSQ=0.715;LDAF=0.0158;AVGPOST=0.9914;RSQ=0.7774;ERATE=0.0029;THETA=0.0252;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 145088933 . CAAG C 1653 PASS INDEL;BAVGPOST=0.979;BRSQ=0.489;LDAF=0.0171;AVGPOST=0.9888;RSQ=0.6975;ERATE=0.0008;THETA=0.0164;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 145089110 . T TA 367 PASS INDEL;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9228;ERATE=0.0004;THETA=0.0098;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145089211 rs113267895 ATCT A 1603 PASS INDEL;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0065;AVGPOST=0.9989;RSQ=0.9314;ERATE=0.0013;THETA=0.0039;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 145089507 rs10629595 C CA 4961 PASS INDEL;BAVGPOST=0.717;BRSQ=0.204;LDAF=0.7673;AVGPOST=0.7103;RSQ=0.3169;ERATE=0.0247;THETA=0.0207;AC=1916;AN=2184 GT:DS:GL:BD 0.87728935 1 1 145091093 . AAT A 118 PASS INDEL;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8333;ERATE=0.0004;THETA=0.0111;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145092644 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.617;LDAF=0.9800;AVGPOST=0.9857;RSQ=0.7031;ERATE=0.0022;THETA=0.0240;AC=2149;AN=2184 GT:DS:GL:BD 0.98397434 1 1 145092717 rs33943431 C CA 215274 PASS INDEL;BAVGPOST=1.000;BRSQ=0;LDAF=0.9999;AVGPOST=0.9998;RSQ=0.0498;ERATE=0.0003;THETA=0.0145;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 145092966 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.973;LDAF=0.4189;AVGPOST=0.9784;RSQ=0.9737;ERATE=0.0006;THETA=0.0033;AC=918;AN=2184 GT:DS:GL:BD 0.42032966 0 1 145093015 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.957;LDAF=0.0322;AVGPOST=0.9972;RSQ=0.9683;ERATE=0.0004;THETA=0.0072;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 145093042 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8182;ERATE=0.0004;THETA=0.0043;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145093119 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9641;ERATE=0.0004;THETA=0.0019;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145093273 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0004;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145093318 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7301;ERATE=0.0004;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145093604 . G GTATT 997 PASS INDEL;BAVGPOST=0.997;BRSQ=0.657;LDAF=0.0069;AVGPOST=0.9934;RSQ=0.5515;ERATE=0.0011;THETA=0.0065;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145093670 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9738;ERATE=0.0003;THETA=0.0107;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145093859 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0116;AVGPOST=0.9993;RSQ=0.9708;ERATE=0.0004;THETA=0.0020;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 145093893 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1762;AVGPOST=0.9983;RSQ=0.9956;ERATE=0.0004;THETA=0.0014;AC=385;AN=2184 GT:DS:GL:BD 0.17628205 0 1 145093997 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6343;ERATE=0.0004;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145094147 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.1438;AVGPOST=0.9971;RSQ=0.9927;ERATE=0.0003;THETA=0.0027;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 145094149 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0004;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145094160 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0259;AVGPOST=0.9984;RSQ=0.9782;ERATE=0.0004;THETA=0.0018;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 145094166 . TTC T 409 PASS INDEL;BAVGPOST=0.995;BRSQ=0.590;LDAF=0.0203;AVGPOST=0.9723;RSQ=0.4575;ERATE=0.0032;THETA=0.0008;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 145094180 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145094204 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6244;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145094336 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7408;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145094412 . CT C 39 PASS INDEL;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7701;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145094426 . A AT 1753 PASS INDEL;BAVGPOST=0.995;BRSQ=0.885;LDAF=0.0248;AVGPOST=0.9910;RSQ=0.8568;ERATE=0.0012;THETA=0.0024;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 145094479 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.881;LDAF=0.0078;AVGPOST=0.9988;RSQ=0.9391;ERATE=0.0004;THETA=0.0024;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 145094584 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2767;AVGPOST=0.9926;RSQ=0.9893;ERATE=0.0005;THETA=0.0019;AC=609;AN=2184 GT:DS:GL:BD 0.27884614 0 1 145094673 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0204;AVGPOST=0.9985;RSQ=0.9732;ERATE=0.0003;THETA=0.0011;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 145094697 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.709;LDAF=0.0032;AVGPOST=0.9975;RSQ=0.6772;ERATE=0.0010;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145094769 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7290;ERATE=0.0004;THETA=0.0021;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145094900 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1974;AVGPOST=0.9963;RSQ=0.9921;ERATE=0.0006;THETA=0.0028;AC=432;AN=2184 GT:DS:GL:BD 0.19780220 0 1 145094962 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0004;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145095005 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0004;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145095105 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7679;ERATE=0.0006;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145095199 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7548;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145095237 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5060;ERATE=0.0005;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145095324 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7458;ERATE=0.0004;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145095338 . GATAA G 291 PASS INDEL;BAVGPOST=0.998;BRSQ=0.687;LDAF=0.0053;AVGPOST=0.9945;RSQ=0.5387;ERATE=0.0007;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145095477 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2306;AVGPOST=0.9944;RSQ=0.9889;ERATE=0.0004;THETA=0.0069;AC=505;AN=2184 GT:DS:GL:BD 0.23122710 0 1 145095534 . TTA T 5312 PASS INDEL;BAVGPOST=0.904;BRSQ=0.689;LDAF=0.1721;AVGPOST=0.9057;RSQ=0.7580;ERATE=0.0017;THETA=0.0019;AC=321;AN=2184 GT:DS:GL:BD 0.14697802 0 1 145095535 rs72214601 TA T 8060 PASS INDEL;BAVGPOST=0.917;BRSQ=0.722;LDAF=0.1638;AVGPOST=0.9189;RSQ=0.7855;ERATE=0.0007;THETA=0.0021;AC=314;AN=2184 GT:DS:GL:BD 0.14377290 0 1 145095590 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.989;LDAF=0.2493;AVGPOST=0.9864;RSQ=0.9767;ERATE=0.0007;THETA=0.0059;AC=546;AN=2184 GT:DS:GL:BD 0.25000000 0 1 145095756 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.957;BRSQ=0.830;LDAF=0.1244;AVGPOST=0.9291;RSQ=0.7599;ERATE=0.0018;THETA=0.0079;AC=250;AN=2184 GT:DS:GL:BD 0.11446887 0 1 145095781 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.284;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.3344;ERATE=0.0006;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145095802 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.933;LDAF=0.2345;AVGPOST=0.9639;RSQ=0.9353;ERATE=0.0009;THETA=0.0050;AC=527;AN=2184 GT:DS:GL:BD 0.24130036 0 1 145095963 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0212;AVGPOST=0.9991;RSQ=0.9847;ERATE=0.0004;THETA=0.0150;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 145095968 . A AT 18 PASS INDEL;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5854;ERATE=0.0004;THETA=0.0085;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145095984 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5465;ERATE=0.0003;THETA=0.0117;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145096045 . CAT C 130 PASS INDEL;BAVGPOST=0.999;BRSQ=0.743;LDAF=0.0034;AVGPOST=0.9968;RSQ=0.5672;ERATE=0.0007;THETA=0.0134;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145096205 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5159;ERATE=0.0004;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145096251 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8425;ERATE=0.0004;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145096328 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0188;AVGPOST=0.9986;RSQ=0.9758;ERATE=0.0004;THETA=0.0095;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 145096429 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8720;ERATE=0.0005;THETA=0.0044;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145096567 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0076;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145096660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0004;THETA=0.0120;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145096760 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0211;AVGPOST=0.9991;RSQ=0.9861;ERATE=0.0004;THETA=0.0018;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 145096913 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0004;THETA=0.0141;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145098473 . AT A 1025 PASS INDEL;BAVGPOST=0.998;BRSQ=0.886;LDAF=0.0101;AVGPOST=0.9975;RSQ=0.9093;ERATE=0.0005;THETA=0.0032;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 145099495 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.866;LDAF=0.9827;AVGPOST=0.9953;RSQ=0.8993;ERATE=0.0004;THETA=0.0081;AC=2145;AN=2184 GT:DS:GL:BD 0.98214287 1 1 145099697 . CA C 53 PASS INDEL;BAVGPOST=0.995;BRSQ=0.362;LDAF=0.0074;AVGPOST=0.9888;RSQ=0.3955;ERATE=0.0014;THETA=0.0056;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145101566 . GT G 1925 PASS INDEL;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0134;AVGPOST=0.9988;RSQ=0.9681;ERATE=0.0003;THETA=0.0110;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 145101605 rs113062007 CT C 17698 PASS INDEL;BAVGPOST=0.976;BRSQ=0.899;LDAF=0.1569;AVGPOST=0.9771;RSQ=0.9241;ERATE=0.0007;THETA=0.0239;AC=338;AN=2184 GT:DS:GL:BD 0.15476191 0 1 145101735 . G GT 1758 PASS INDEL;BAVGPOST=0.996;BRSQ=0.841;LDAF=0.0116;AVGPOST=0.9964;RSQ=0.8661;ERATE=0.0007;THETA=0.0226;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145102646 . CT C 158 PASS INDEL;BAVGPOST=0.999;BRSQ=0.699;LDAF=0.0080;AVGPOST=0.9916;RSQ=0.6104;ERATE=0.0009;THETA=0.0050;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 145103203 . AT A 117 PASS INDEL;BAVGPOST=0.998;BRSQ=0.614;LDAF=0.0046;AVGPOST=0.9940;RSQ=0.4702;ERATE=0.0007;THETA=0.0303;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145103949 . AC A 210 PASS INDEL;BAVGPOST=0.999;BRSQ=0.637;LDAF=0.0137;AVGPOST=0.9796;RSQ=0.4472;ERATE=0.0008;THETA=0.0271;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145104249 . TA T 43 PASS INDEL;BAVGPOST=0.999;BRSQ=0.751;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6770;ERATE=0.0004;THETA=0.0107;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145104322 . TC T 1687 PASS INDEL;BAVGPOST=0.997;BRSQ=0.929;LDAF=0.0115;AVGPOST=0.9980;RSQ=0.9288;ERATE=0.0005;THETA=0.0258;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 145104849 . C CA 1348 PASS INDEL;BAVGPOST=0.997;BRSQ=0.927;LDAF=0.0136;AVGPOST=0.9979;RSQ=0.9417;ERATE=0.0004;THETA=0.0305;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 145105904 . TTA T 741 PASS INDEL;BAVGPOST=0.998;BRSQ=0.860;LDAF=0.0058;AVGPOST=0.9980;RSQ=0.8705;ERATE=0.0007;THETA=0.0306;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 145108869 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.827;LDAF=0.9620;AVGPOST=0.9876;RSQ=0.8696;ERATE=0.0014;THETA=0.0332;AC=2105;AN=2184 GT:DS:GL:BD 0.96382785 1 1 145109259 rs11386827 C CA 15163 PASS INDEL;BAVGPOST=0.936;BRSQ=0.752;LDAF=0.2460;AVGPOST=0.9386;RSQ=0.8130;ERATE=0.0235;THETA=0.0216;AC=490;AN=2184 GT:DS:GL:BD 0.22435898 0 1 145111729 . TC T 73 PASS INDEL;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5492;ERATE=0.0005;THETA=0.0221;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145112673 . AT A 598 PASS INDEL;BAVGPOST=0.992;BRSQ=0.761;LDAF=0.0183;AVGPOST=0.9896;RSQ=0.7578;ERATE=0.0016;THETA=0.0279;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 145116192 rs66989703 TG T 45656 PASS INDEL;BAVGPOST=0.935;BRSQ=0.737;LDAF=0.3574;AVGPOST=0.9405;RSQ=0.7893;ERATE=0.0298;THETA=0.0120;AC=731;AN=2184 GT:DS:GL:BD 0.33470696 0 1 145117797 rs71811407 CAT C 10479 PASS INDEL;BAVGPOST=0.978;BRSQ=0.863;LDAF=0.0803;AVGPOST=0.9809;RSQ=0.8939;ERATE=0.0010;THETA=0.0418;AC=162;AN=2184 GT:DS:GL:BD 0.07417583 0 1 145118546 . CA C 664 PASS INDEL;BAVGPOST=0.996;BRSQ=0.777;LDAF=0.0110;AVGPOST=0.9944;RSQ=0.7834;ERATE=0.0010;THETA=0.0174;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 145119384 . C CA 215 PASS INDEL;BAVGPOST=0.991;BRSQ=0.520;LDAF=0.0150;AVGPOST=0.9815;RSQ=0.4387;ERATE=0.0007;THETA=0.0266;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 145119534 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.662;LDAF=0.0219;AVGPOST=0.9868;RSQ=0.7678;ERATE=0.0005;THETA=0.0456;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 145119633 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.695;LDAF=0.0354;AVGPOST=0.9801;RSQ=0.7680;ERATE=0.0025;THETA=0.0254;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 145119643 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.816;BRSQ=0.408;LDAF=0.2322;AVGPOST=0.7917;RSQ=0.4757;ERATE=0.0193;THETA=0.0258;AC=305;AN=2184 GT:DS:GL:BD 0.13965201 0 1 145119645 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.707;LDAF=0.9411;AVGPOST=0.9512;RSQ=0.6695;ERATE=0.0054;THETA=0.0199;AC=2101;AN=2184 GT:DS:GL:BD 0.96199632 1 1 145119663 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.802;BRSQ=0.593;LDAF=0.7185;AVGPOST=0.7929;RSQ=0.6161;ERATE=0.0114;THETA=0.0477;AC=1707;AN=2184 GT:DS:GL:BD 0.78159338 1 1 145119670 . TTTTG T 984 PASS INDEL;BAVGPOST=0.985;BRSQ=0.715;LDAF=0.0329;AVGPOST=0.9748;RSQ=0.6611;ERATE=0.0063;THETA=0.0219;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 145119969 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.824;LDAF=0.9634;AVGPOST=0.9784;RSQ=0.7925;ERATE=0.0008;THETA=0.0391;AC=2114;AN=2184 GT:DS:GL:BD 0.96794873 1 1 145121101 . AAT A 83364 PASS INDEL;BAVGPOST=0.881;BRSQ=0.686;LDAF=0.6740;AVGPOST=0.8889;RSQ=0.7454;ERATE=0.0296;THETA=0.0279;AC=1529;AN=2184 GT:DS:GL:BD 0.70009160 1 1 145121131 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.708;LDAF=0.0073;AVGPOST=0.9944;RSQ=0.6990;ERATE=0.0014;THETA=0.0291;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145121671 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8136;ERATE=0.0004;THETA=0.0353;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145121686 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.904;BRSQ=0.649;LDAF=0.1609;AVGPOST=0.9094;RSQ=0.7119;ERATE=0.0052;THETA=0.0529;AC=277;AN=2184 GT:DS:GL:BD 0.12683150 0 1 145121693 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.871;LDAF=0.9117;AVGPOST=0.9700;RSQ=0.8488;ERATE=0.0017;THETA=0.0245;AC=2010;AN=2184 GT:DS:GL:BD 0.92032969 1 1 145121967 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.926;LDAF=0.8970;AVGPOST=0.9827;RSQ=0.9238;ERATE=0.0010;THETA=0.0030;AC=1968;AN=2184 GT:DS:GL:BD 0.90109891 1 1 145122168 . TA T 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6172;ERATE=0.0004;THETA=0.0280;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145122444 . TC T 186 PASS INDEL;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0013;AVGPOST=0.9999;RSQ=0.9533;ERATE=0.0003;THETA=0.0151;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145123496 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.903;LDAF=0.8743;AVGPOST=0.9822;RSQ=0.9350;ERATE=0.0013;THETA=0.0028;AC=1915;AN=2184 GT:DS:GL:BD 0.87683153 1 1 145124804 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.916;LDAF=0.8831;AVGPOST=0.9781;RSQ=0.9160;ERATE=0.0024;THETA=0.0079;AC=1939;AN=2184 GT:DS:GL:BD 0.88782054 1 1 145124860 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.838;LDAF=0.0467;AVGPOST=0.9843;RSQ=0.8690;ERATE=0.0037;THETA=0.0298;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 145125651 . CT C 132 PASS INDEL;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7774;ERATE=0.0003;THETA=0.0196;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145126254 . T TAAG 4950 PASS INDEL;BAVGPOST=0.992;BRSQ=0.880;LDAF=0.0349;AVGPOST=0.9895;RSQ=0.8611;ERATE=0.0053;THETA=0.0073;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 145126452 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.914;LDAF=0.0519;AVGPOST=0.9911;RSQ=0.9308;ERATE=0.0006;THETA=0.0107;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 145126479 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0018;AVGPOST=0.9995;RSQ=0.8803;ERATE=0.0008;THETA=0.0063;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145126991 . CAATT C 2040 PASS INDEL;BAVGPOST=0.983;BRSQ=0.714;LDAF=0.0321;AVGPOST=0.9763;RSQ=0.6712;ERATE=0.0032;THETA=0.0164;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 145127285 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.918;BRSQ=0.704;LDAF=0.1062;AVGPOST=0.9429;RSQ=0.7789;ERATE=0.0013;THETA=0.0080;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 145129434 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.878;LDAF=0.0129;AVGPOST=0.9979;RSQ=0.9271;ERATE=0.0005;THETA=0.0108;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 145129437 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.920;LDAF=0.0478;AVGPOST=0.9912;RSQ=0.9246;ERATE=0.0004;THETA=0.0044;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 145129694 rs59879399 AT A 992 PASS INDEL;BAVGPOST=0.989;BRSQ=0.791;LDAF=0.0209;AVGPOST=0.9923;RSQ=0.8546;ERATE=0.0012;THETA=0.0074;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 145129884 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.875;LDAF=0.0077;AVGPOST=0.9969;RSQ=0.8509;ERATE=0.0007;THETA=0.0091;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 145130022 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.895;LDAF=0.1604;AVGPOST=0.9664;RSQ=0.8966;ERATE=0.0008;THETA=0.0111;AC=340;AN=2184 GT:DS:GL:BD 0.15567766 0 1 145131213 . CA C 606 PASS INDEL;BAVGPOST=0.987;BRSQ=0.580;LDAF=0.0215;AVGPOST=0.9814;RSQ=0.6273;ERATE=0.0018;THETA=0.0105;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 145133947 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.867;BRSQ=0.713;LDAF=0.2887;AVGPOST=0.8811;RSQ=0.7610;ERATE=0.0084;THETA=0.0104;AC=585;AN=2184 GT:DS:GL:BD 0.26785713 0 1 145134085 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.794;LDAF=0.0041;AVGPOST=0.9974;RSQ=0.7334;ERATE=0.0017;THETA=0.0104;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145134207 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.902;BRSQ=0.804;LDAF=0.4783;AVGPOST=0.9009;RSQ=0.8227;ERATE=0.0094;THETA=0.0044;AC=1022;AN=2184 GT:DS:GL:BD 0.46794870 0 1 145135036 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0004;THETA=0.0041;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145135039 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.712;LDAF=0.0027;AVGPOST=0.9964;RSQ=0.5685;ERATE=0.0006;THETA=0.0041;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145135192 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.931;BRSQ=0.768;LDAF=0.2034;AVGPOST=0.9531;RSQ=0.8670;ERATE=0.0010;THETA=0.0015;AC=433;AN=2184 GT:DS:GL:BD 0.19826007 0 1 145136013 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.680;LDAF=0.0100;AVGPOST=0.9932;RSQ=0.7421;ERATE=0.0005;THETA=0.0059;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 145136173 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.851;BRSQ=0.645;LDAF=0.5815;AVGPOST=0.8651;RSQ=0.7259;ERATE=0.0097;THETA=0.0058;AC=1240;AN=2184 GT:DS:GL:BD 0.56776559 1 1 145136458 . C CA 178 PASS INDEL;BAVGPOST=0.679;BRSQ=0.076;LDAF=0.1882;AVGPOST=0.7126;RSQ=0.1988;ERATE=0.0130;THETA=0.0017;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 145137222 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.898;LDAF=0.2059;AVGPOST=0.9513;RSQ=0.8879;ERATE=0.0017;THETA=0.0073;AC=426;AN=2184 GT:DS:GL:BD 0.19505495 0 1 145137232 . A AAAG 300 PASS INDEL;BAVGPOST=0.998;BRSQ=0.427;LDAF=0.0058;AVGPOST=0.9904;RSQ=0.2652;ERATE=0.0007;THETA=0.0114;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145137559 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.506;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.3720;ERATE=0.0006;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145137781 . AG A 16972 PASS INDEL;BAVGPOST=0.938;BRSQ=0.810;LDAF=0.8416;AVGPOST=0.9417;RSQ=0.8436;ERATE=0.0014;THETA=0.0025;AC=1874;AN=2184 GT:DS:GL:BD 0.85805863 1 1 145139088 . C CG 17236 PASS INDEL;BAVGPOST=0.914;BRSQ=0.515;LDAF=0.8943;AVGPOST=0.8651;RSQ=0.4396;ERATE=0.0048;THETA=0.0035;AC=2077;AN=2184 GT:DS:GL:BD 0.95100731 1 1 145139108 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8190;ERATE=0.0003;THETA=0.0143;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145139411 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0060;AVGPOST=0.9988;RSQ=0.9208;ERATE=0.0007;THETA=0.0091;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 145139657 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.536;LDAF=0.0206;AVGPOST=0.9762;RSQ=0.5320;ERATE=0.0007;THETA=0.0152;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 145139661 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.875;LDAF=0.8610;AVGPOST=0.9210;RSQ=0.7475;ERATE=0.0040;THETA=0.0094;AC=1928;AN=2184 GT:DS:GL:BD 0.88278389 1 1 145139830 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.885;BRSQ=0.554;LDAF=0.1436;AVGPOST=0.8800;RSQ=0.5952;ERATE=0.0106;THETA=0.0071;AC=231;AN=2184 GT:DS:GL:BD 0.10576923 0 1 145139852 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.747;BRSQ=0.474;LDAF=0.3741;AVGPOST=0.7642;RSQ=0.5854;ERATE=0.0042;THETA=0.0109;AC=731;AN=2184 GT:DS:GL:BD 0.33470696 0 1 145139912 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.752;LDAF=0.0388;AVGPOST=0.9805;RSQ=0.7990;ERATE=0.0006;THETA=0.0044;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 145139933 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.795;LDAF=0.0109;AVGPOST=0.9952;RSQ=0.8236;ERATE=0.0012;THETA=0.0064;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 145139948 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.891;LDAF=0.1927;AVGPOST=0.9723;RSQ=0.9182;ERATE=0.0087;THETA=0.0108;AC=415;AN=2184 GT:DS:GL:BD 0.19001831 0 1 145140882 . GA G 10 PASS INDEL;BAVGPOST=0.998;BRSQ=0.526;LDAF=0.0029;AVGPOST=0.9968;RSQ=0.5752;ERATE=0.0005;THETA=0.0292;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145141188 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.926;BRSQ=0.761;LDAF=0.1949;AVGPOST=0.9234;RSQ=0.8007;ERATE=0.0051;THETA=0.0042;AC=391;AN=2184 GT:DS:GL:BD 0.17902930 0 1 145141738 . ATC A 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0130;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145141797 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.908;LDAF=0.0545;AVGPOST=0.9915;RSQ=0.9370;ERATE=0.0008;THETA=0.0101;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 145141860 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.848;LDAF=0.0537;AVGPOST=0.9838;RSQ=0.8784;ERATE=0.0027;THETA=0.0066;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 145141965 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.916;BRSQ=0.787;LDAF=0.3062;AVGPOST=0.9165;RSQ=0.8255;ERATE=0.0152;THETA=0.0160;AC=641;AN=2184 GT:DS:GL:BD 0.29349816 0 1 145142139 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.839;LDAF=0.0942;AVGPOST=0.9681;RSQ=0.8576;ERATE=0.0030;THETA=0.0116;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 145142214 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.949;BRSQ=0.786;LDAF=0.1323;AVGPOST=0.9468;RSQ=0.8294;ERATE=0.0056;THETA=0.0050;AC=265;AN=2184 GT:DS:GL:BD 0.12133700 0 1 145142435 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.808;BRSQ=0.716;LDAF=0.4930;AVGPOST=0.8179;RSQ=0.7537;ERATE=0.0067;THETA=0.0046;AC=1113;AN=2184 GT:DS:GL:BD 0.50961536 1 1 145142614 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.896;LDAF=0.0616;AVGPOST=0.9889;RSQ=0.9255;ERATE=0.0011;THETA=0.0025;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 145142791 . T TA 29 PASS INDEL;BAVGPOST=0.996;BRSQ=0.177;LDAF=0.0221;AVGPOST=0.9606;RSQ=0.2134;ERATE=0.0033;THETA=0.0111;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145143580 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.786;BRSQ=0.695;LDAF=0.4170;AVGPOST=0.8184;RSQ=0.7644;ERATE=0.0061;THETA=0.0085;AC=924;AN=2184 GT:DS:GL:BD 0.42307693 0 1 145144308 . TTCTG T 1215 PASS INDEL;BAVGPOST=0.994;BRSQ=0.725;LDAF=0.0185;AVGPOST=0.9817;RSQ=0.5985;ERATE=0.0013;THETA=0.0105;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 145145056 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.769;LDAF=0.0270;AVGPOST=0.9852;RSQ=0.7883;ERATE=0.0005;THETA=0.0120;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 145145467 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.859;LDAF=0.0434;AVGPOST=0.9883;RSQ=0.8891;ERATE=0.0016;THETA=0.0079;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 145145646 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.730;LDAF=0.0129;AVGPOST=0.9914;RSQ=0.7470;ERATE=0.0010;THETA=0.0065;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145145753 . CTG C 123 PASS INDEL;BAVGPOST=0.999;BRSQ=0.830;LDAF=0.0034;AVGPOST=0.9966;RSQ=0.6050;ERATE=0.0011;THETA=0.0088;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145146785 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.530;LDAF=0.0076;AVGPOST=0.9902;RSQ=0.5089;ERATE=0.0010;THETA=0.0051;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145147245 . AT A 248 PASS INDEL;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0034;AVGPOST=0.9968;RSQ=0.5697;ERATE=0.0021;THETA=0.0053;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145147995 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.818;LDAF=0.0692;AVGPOST=0.9744;RSQ=0.8518;ERATE=0.0077;THETA=0.0046;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 145148995 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6392;ERATE=0.0004;THETA=0.0056;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145148999 . TTA T 66 PASS INDEL;BAVGPOST=0.987;BRSQ=0.440;LDAF=0.0268;AVGPOST=0.9605;RSQ=0.3697;ERATE=0.0068;THETA=0.0041;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 145149997 . T TC 439 PASS INDEL;BAVGPOST=0.724;BRSQ=0.121;LDAF=0.1620;AVGPOST=0.7784;RSQ=0.3456;ERATE=0.0030;THETA=0.0040;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 145152016 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.899;LDAF=0.0468;AVGPOST=0.9875;RSQ=0.9028;ERATE=0.0005;THETA=0.0090;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 145152118 . TTAA T 43 PASS INDEL;BAVGPOST=0.995;BRSQ=0.274;LDAF=0.0057;AVGPOST=0.9910;RSQ=0.3234;ERATE=0.0012;THETA=0.0057;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145152313 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7577;ERATE=0.0004;THETA=0.0050;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145152335 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.648;LDAF=0.0146;AVGPOST=0.9922;RSQ=0.7758;ERATE=0.0004;THETA=0.0130;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 145152631 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.866;BRSQ=0.674;LDAF=0.3783;AVGPOST=0.8715;RSQ=0.7285;ERATE=0.0295;THETA=0.0064;AC=785;AN=2184 GT:DS:GL:BD 0.35943222 0 1 145153622 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.903;LDAF=0.0493;AVGPOST=0.9856;RSQ=0.8893;ERATE=0.0005;THETA=0.0022;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 145153770 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.952;BRSQ=0.821;LDAF=0.8489;AVGPOST=0.9163;RSQ=0.7535;ERATE=0.0040;THETA=0.0185;AC=1913;AN=2184 GT:DS:GL:BD 0.87591577 1 1 145153782 rs61416160 CTA C 8719 PASS INDEL;BAVGPOST=0.883;BRSQ=0.565;LDAF=0.1690;AVGPOST=0.8595;RSQ=0.5644;ERATE=0.0230;THETA=0.0172;AC=229;AN=2184 GT:DS:GL:BD 0.10485348 0 1 145153912 . GC G 31 PASS INDEL;BAVGPOST=0.998;BRSQ=0.369;LDAF=0.0179;AVGPOST=0.9713;RSQ=0.3567;ERATE=0.0014;THETA=0.0013;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 145154806 . CCT C 179 PASS INDEL;BAVGPOST=0.992;BRSQ=0.291;LDAF=0.0094;AVGPOST=0.9862;RSQ=0.3447;ERATE=0.0010;THETA=0.0097;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145157085 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.954;LDAF=0.0572;AVGPOST=0.9941;RSQ=0.9588;ERATE=0.0004;THETA=0.0031;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 145157163 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.792;LDAF=0.0304;AVGPOST=0.9868;RSQ=0.8380;ERATE=0.0020;THETA=0.0085;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 145157263 . CGG C 229 PASS INDEL;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0026;AVGPOST=0.9964;RSQ=0.4207;ERATE=0.0005;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145157385 . TG T 65 PASS INDEL;BAVGPOST=0.999;BRSQ=0.693;LDAF=0.0061;AVGPOST=0.9904;RSQ=0.3240;ERATE=0.0022;THETA=0.0223;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145158122 . TTTGA T 241 PASS INDEL;BAVGPOST=0.997;BRSQ=0.636;LDAF=0.0060;AVGPOST=0.9926;RSQ=0.5010;ERATE=0.0012;THETA=0.0032;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145159539 . AAGTG A 17 PASS INDEL;BAVGPOST=0.998;BRSQ=0.420;LDAF=0.0025;AVGPOST=0.9962;RSQ=0.3370;ERATE=0.0008;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145159570 . CA C 74 PASS INDEL;BAVGPOST=0.999;BRSQ=0.468;LDAF=0.0084;AVGPOST=0.9846;RSQ=0.2819;ERATE=0.0010;THETA=0.0117;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145160111 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.783;LDAF=0.0405;AVGPOST=0.9810;RSQ=0.8271;ERATE=0.0005;THETA=0.0034;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 145160304 . AG A 344 PASS INDEL;BAVGPOST=0.999;BRSQ=0.694;LDAF=0.0042;AVGPOST=0.9952;RSQ=0.4945;ERATE=0.0008;THETA=0.0063;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145160316 . CTA C 103 PASS INDEL;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0004;THETA=0.0080;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145160479 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.830;LDAF=0.1020;AVGPOST=0.9694;RSQ=0.8631;ERATE=0.0011;THETA=0.0070;AC=205;AN=2184 GT:DS:GL:BD 0.09386447 0 1 145160506 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.714;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5127;ERATE=0.0004;THETA=0.0055;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145160512 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.890;BRSQ=0.796;LDAF=0.7745;AVGPOST=0.9022;RSQ=0.8068;ERATE=0.0017;THETA=0.0044;AC=1742;AN=2184 GT:DS:GL:BD 0.79761904 1 1 145161588 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0133;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145162013 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.807;BRSQ=0.554;LDAF=0.4203;AVGPOST=0.8270;RSQ=0.6345;ERATE=0.0334;THETA=0.0051;AC=879;AN=2184 GT:DS:GL:BD 0.40247253 0 1 145162368 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.728;LDAF=0.9698;AVGPOST=0.9851;RSQ=0.8169;ERATE=0.0010;THETA=0.0102;AC=2128;AN=2184 GT:DS:GL:BD 0.97435898 1 1 145164401 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.914;BRSQ=0.732;LDAF=0.2110;AVGPOST=0.9212;RSQ=0.7788;ERATE=0.0059;THETA=0.0109;AC=414;AN=2184 GT:DS:GL:BD 0.18956044 0 1 145164701 . TCA T 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.674;LDAF=0.0039;AVGPOST=0.9936;RSQ=0.2876;ERATE=0.0010;THETA=0.0100;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145166123 . CTCT C 1107 PASS INDEL;BAVGPOST=0.978;BRSQ=0.622;LDAF=0.0338;AVGPOST=0.9706;RSQ=0.5992;ERATE=0.0048;THETA=0.0081;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 145167492 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.795;LDAF=0.0823;AVGPOST=0.9718;RSQ=0.8467;ERATE=0.0034;THETA=0.0116;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 145167494 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.651;LDAF=0.0404;AVGPOST=0.9753;RSQ=0.7735;ERATE=0.0009;THETA=0.0113;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 145167631 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.957;BRSQ=0.766;LDAF=0.0907;AVGPOST=0.9635;RSQ=0.8071;ERATE=0.0106;THETA=0.0232;AC=179;AN=2184 GT:DS:GL:BD 0.08195971 0 1 145167900 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6797;ERATE=0.0003;THETA=0.0064;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145168135 . T TA 210 PASS INDEL;BAVGPOST=0.965;BRSQ=0.161;LDAF=0.0486;AVGPOST=0.9165;RSQ=0.2572;ERATE=0.0022;THETA=0.0140;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 145170148 . AGCTTGGGT A 13149 PASS INDEL;BAVGPOST=0.788;BRSQ=0.334;LDAF=0.2215;AVGPOST=0.7771;RSQ=0.4301;ERATE=0.0210;THETA=0.0183;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 145170515 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0013;AVGPOST=0.9981;RSQ=0.3064;ERATE=0.0005;THETA=0.0128;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145171352 . T TA 3217 PASS INDEL;BAVGPOST=0.995;BRSQ=0.908;LDAF=0.0252;AVGPOST=0.9957;RSQ=0.9294;ERATE=0.0010;THETA=0.0157;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 145171772 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.895;BRSQ=0.827;LDAF=0.6377;AVGPOST=0.8938;RSQ=0.8412;ERATE=0.0034;THETA=0.0132;AC=1445;AN=2184 GT:DS:GL:BD 0.66163003 1 1 145172606 . G GC 527 PASS INDEL;BAVGPOST=0.987;BRSQ=0.768;LDAF=0.0318;AVGPOST=0.9851;RSQ=0.8235;ERATE=0.0007;THETA=0.0233;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 145172647 . C CCT 1605 PASS INDEL;BAVGPOST=0.984;BRSQ=0.763;LDAF=0.0378;AVGPOST=0.9826;RSQ=0.8247;ERATE=0.0027;THETA=0.0184;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 145173840 . A AT 42 PASS INDEL;BAVGPOST=0.997;BRSQ=0.519;LDAF=0.0125;AVGPOST=0.9789;RSQ=0.2883;ERATE=0.0017;THETA=0.0142;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145173852 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.768;LDAF=0.9718;AVGPOST=0.9839;RSQ=0.7846;ERATE=0.0012;THETA=0.0311;AC=2133;AN=2184 GT:DS:GL:BD 0.97664833 1 1 145173996 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.917;LDAF=0.0533;AVGPOST=0.9915;RSQ=0.9383;ERATE=0.0004;THETA=0.0175;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 145174196 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.583;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.3236;ERATE=0.0008;THETA=0.0095;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145174201 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.652;LDAF=0.0040;AVGPOST=0.9968;RSQ=0.6793;ERATE=0.0007;THETA=0.0183;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145174230 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.823;LDAF=0.9389;AVGPOST=0.9796;RSQ=0.8658;ERATE=0.0006;THETA=0.0162;AC=2052;AN=2184 GT:DS:GL:BD 0.93956041 1 1 145174637 . G GT 70 PASS INDEL;BAVGPOST=0.998;BRSQ=0.481;LDAF=0.0046;AVGPOST=0.9920;RSQ=0.3242;ERATE=0.0012;THETA=0.0187;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145174911 rs67306527 CT C 5562 PASS INDEL;BAVGPOST=0.940;BRSQ=0.725;LDAF=0.1025;AVGPOST=0.9254;RSQ=0.6672;ERATE=0.0026;THETA=0.0286;AC=162;AN=2184 GT:DS:GL:BD 0.07417583 0 1 145174992 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.688;LDAF=0.0210;AVGPOST=0.9880;RSQ=0.7643;ERATE=0.0009;THETA=0.0338;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 145175160 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.935;BRSQ=0.788;LDAF=0.2036;AVGPOST=0.9353;RSQ=0.8204;ERATE=0.0094;THETA=0.0271;AC=414;AN=2184 GT:DS:GL:BD 0.18956044 0 1 145175236 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.817;LDAF=0.1076;AVGPOST=0.9594;RSQ=0.8379;ERATE=0.0115;THETA=0.0431;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 145175336 . CA C 110 PASS INDEL;BAVGPOST=0.997;BRSQ=0.571;LDAF=0.0038;AVGPOST=0.9962;RSQ=0.5806;ERATE=0.0007;THETA=0.0149;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145175658 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.856;LDAF=0.0475;AVGPOST=0.9876;RSQ=0.8955;ERATE=0.0007;THETA=0.0123;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 145176986 . G GGT 611 PASS INDEL;BAVGPOST=0.993;BRSQ=0.730;LDAF=0.0141;AVGPOST=0.9909;RSQ=0.7369;ERATE=0.0035;THETA=0.0367;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 145177475 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9334;ERATE=0.0003;THETA=0.0098;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145177480 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.862;LDAF=0.0444;AVGPOST=0.9886;RSQ=0.8985;ERATE=0.0003;THETA=0.0085;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 145178279 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.953;BRSQ=0.667;LDAF=0.0839;AVGPOST=0.9433;RSQ=0.6947;ERATE=0.0055;THETA=0.0253;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 145178503 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.830;LDAF=0.0957;AVGPOST=0.9700;RSQ=0.8465;ERATE=0.0110;THETA=0.0352;AC=187;AN=2184 GT:DS:GL:BD 0.08562271 0 1 145179318 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.670;LDAF=0.0112;AVGPOST=0.9917;RSQ=0.6970;ERATE=0.0027;THETA=0.0241;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 145179321 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.800;LDAF=0.0553;AVGPOST=0.9799;RSQ=0.8378;ERATE=0.0013;THETA=0.0522;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 145179484 . C CA 806 PASS INDEL;BAVGPOST=0.932;BRSQ=0.530;LDAF=0.0829;AVGPOST=0.9240;RSQ=0.5828;ERATE=0.0130;THETA=0.0162;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 145181099 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.794;LDAF=0.0427;AVGPOST=0.9809;RSQ=0.8234;ERATE=0.0014;THETA=0.0233;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 145181130 rs11282530 C CCCCAGGTT 8529 PASS INDEL;BAVGPOST=0.970;BRSQ=0.711;LDAF=0.0632;AVGPOST=0.9614;RSQ=0.7004;ERATE=0.0053;THETA=0.0327;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 145181147 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.826;BRSQ=0.578;LDAF=0.6416;AVGPOST=0.8420;RSQ=0.6646;ERATE=0.0022;THETA=0.0106;AC=1460;AN=2184 GT:DS:GL:BD 0.66849816 1 1 145181239 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0023;AVGPOST=0.9987;RSQ=0.7750;ERATE=0.0004;THETA=0.0252;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145181632 . GTTA G 28 PASS INDEL;BAVGPOST=0.999;BRSQ=0.618;LDAF=0.0034;AVGPOST=0.9941;RSQ=0.2243;ERATE=0.0012;THETA=0.0201;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145182251 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6589;ERATE=0.0004;THETA=0.0210;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145182306 . T TG 903 PASS INDEL;BAVGPOST=0.989;BRSQ=0.670;LDAF=0.0140;AVGPOST=0.9929;RSQ=0.7806;ERATE=0.0007;THETA=0.0273;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 145182491 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.236;LDAF=0.9728;AVGPOST=0.9550;RSQ=0.2938;ERATE=0.0039;THETA=0.0248;AC=2170;AN=2184 GT:DS:GL:BD 0.99358976 1 1 145182905 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.781;BRSQ=0.425;LDAF=0.3029;AVGPOST=0.7807;RSQ=0.5106;ERATE=0.0175;THETA=0.0329;AC=498;AN=2184 GT:DS:GL:BD 0.22802198 0 1 145183323 . G GA 12585 PASS INDEL;BAVGPOST=0.960;BRSQ=0.078;LDAF=0.9094;AVGPOST=0.8356;RSQ=0.1272;ERATE=0.0052;THETA=0.0138;AC=2173;AN=2184 GT:DS:GL:BD 0.99496335 1 1 145183932 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.879;BRSQ=0.602;LDAF=0.1905;AVGPOST=0.8913;RSQ=0.6734;ERATE=0.0131;THETA=0.0218;AC=341;AN=2184 GT:DS:GL:BD 0.15613553 0 1 145184318 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.7758;ERATE=0.0005;THETA=0.0215;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145184785 . CCT C 1583 PASS INDEL;BAVGPOST=0.480;BRSQ=0.113;LDAF=0.2941;AVGPOST=0.6169;RSQ=0.2519;ERATE=0.0163;THETA=0.0208;AC=225;AN=2184 GT:DS:GL:BD 0.10302198 0 1 145184801 rs10714958 TC T 772 PASS INDEL;BAVGPOST=0.822;BRSQ=0.331;LDAF=0.1268;AVGPOST=0.8490;RSQ=0.4392;ERATE=0.0014;THETA=0.0086;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 145184804 . TG T 769 PASS INDEL;BAVGPOST=0.817;BRSQ=0.327;LDAF=0.1640;AVGPOST=0.7976;RSQ=0.3885;ERATE=0.0069;THETA=0.0278;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 145186416 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6209;ERATE=0.0008;THETA=0.0253;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145187004 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.801;BRSQ=0.555;LDAF=0.7583;AVGPOST=0.8351;RSQ=0.6686;ERATE=0.0059;THETA=0.0080;AC=1780;AN=2184 GT:DS:GL:BD 0.81501830 1 1 145187703 . TGA T 316 PASS INDEL;BAVGPOST=0.995;BRSQ=0.514;LDAF=0.0053;AVGPOST=0.9952;RSQ=0.6229;ERATE=0.0007;THETA=0.0189;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145189354 . T TA 404 PASS INDEL;BAVGPOST=0.989;BRSQ=0.515;LDAF=0.0185;AVGPOST=0.9756;RSQ=0.4046;ERATE=0.0048;THETA=0.0312;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 145190414 . TC T 1591 PASS INDEL;BAVGPOST=0.995;BRSQ=0.855;LDAF=0.0175;AVGPOST=0.9961;RSQ=0.9046;ERATE=0.0007;THETA=0.0127;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 145192045 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.757;LDAF=0.9780;AVGPOST=0.9914;RSQ=0.8516;ERATE=0.0007;THETA=0.0077;AC=2142;AN=2184 GT:DS:GL:BD 0.98076922 1 1 145192159 . GA G 28 PASS INDEL;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7895;ERATE=0.0004;THETA=0.0207;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145192189 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.755;LDAF=0.9781;AVGPOST=0.9919;RSQ=0.8511;ERATE=0.0005;THETA=0.0158;AC=2142;AN=2184 GT:DS:GL:BD 0.98076922 1 1 145193200 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.883;BRSQ=0.686;LDAF=0.3103;AVGPOST=0.8990;RSQ=0.7682;ERATE=0.0048;THETA=0.0148;AC=616;AN=2184 GT:DS:GL:BD 0.28205130 0 1 145195766 . A AAG 981 PASS INDEL;BAVGPOST=0.985;BRSQ=0.751;LDAF=0.0338;AVGPOST=0.9807;RSQ=0.7300;ERATE=0.0057;THETA=0.0178;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 145195797 . G GC 124 PASS INDEL;BAVGPOST=0.998;BRSQ=0.579;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6813;ERATE=0.0011;THETA=0.0070;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145195799 . G GA 750 PASS INDEL;BAVGPOST=0.992;BRSQ=0.664;LDAF=0.0123;AVGPOST=0.9926;RSQ=0.7372;ERATE=0.0012;THETA=0.0144;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 145196604 . CATCT C 243 PASS INDEL;BAVGPOST=0.992;BRSQ=0.313;LDAF=0.0101;AVGPOST=0.9842;RSQ=0.2672;ERATE=0.0026;THETA=0.0200;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145196867 . GA G 502 PASS INDEL;BAVGPOST=0.971;BRSQ=0.529;LDAF=0.0316;AVGPOST=0.9705;RSQ=0.5815;ERATE=0.0060;THETA=0.0152;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 145198699 . C CT 5088 PASS INDEL;BAVGPOST=0.796;BRSQ=0.320;LDAF=0.2305;AVGPOST=0.7807;RSQ=0.4113;ERATE=0.0228;THETA=0.0294;AC=274;AN=2184 GT:DS:GL:BD 0.12545788 0 1 145199585 . TA T 2924 PASS INDEL;BAVGPOST=0.962;BRSQ=0.728;LDAF=0.0804;AVGPOST=0.9585;RSQ=0.7589;ERATE=0.0178;THETA=0.0112;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 145201548 . AT A 8 PASS INDEL;BAVGPOST=0.998;BRSQ=0.499;LDAF=0.0028;AVGPOST=0.9963;RSQ=0.4378;ERATE=0.0011;THETA=0.0220;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145209217 rs5777554 G GC 1050 PASS INDEL;BAVGPOST=0.894;BRSQ=0.434;LDAF=0.0906;AVGPOST=0.9091;RSQ=0.5517;ERATE=0.0091;THETA=0.0272;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 145209366 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.810;BRSQ=0.392;LDAF=0.2122;AVGPOST=0.8062;RSQ=0.4817;ERATE=0.0164;THETA=0.0339;AC=291;AN=2184 GT:DS:GL:BD 0.13324176 0 1 145209576 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.920;BRSQ=0.448;LDAF=0.0478;AVGPOST=0.9517;RSQ=0.6083;ERATE=0.0024;THETA=0.0190;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 145209618 . CCAACCG C 10 PASS INDEL;BAVGPOST=0.987;BRSQ=0.268;LDAF=0.0136;AVGPOST=0.9771;RSQ=0.2415;ERATE=0.0024;THETA=0.0173;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145209811 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.600;LDAF=0.0181;AVGPOST=0.9841;RSQ=0.6145;ERATE=0.0022;THETA=0.0162;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 145209819 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.877;BRSQ=0.601;LDAF=0.1776;AVGPOST=0.8922;RSQ=0.6731;ERATE=0.0148;THETA=0.0085;AC=308;AN=2184 GT:DS:GL:BD 0.14102565 0 1 145209870 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.768;BRSQ=0.351;LDAF=0.3154;AVGPOST=0.7883;RSQ=0.4896;ERATE=0.0189;THETA=0.0244;AC=501;AN=2184 GT:DS:GL:BD 0.22939560 0 1 145210616 . GA G 30 PASS INDEL;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0200;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145212523 . T TG 159 PASS INDEL;BAVGPOST=0.997;BRSQ=0.540;LDAF=0.0045;AVGPOST=0.9955;RSQ=0.6255;ERATE=0.0028;THETA=0.0244;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145213605 . C CA 428 PASS INDEL;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0043;AVGPOST=0.9990;RSQ=0.8989;ERATE=0.0005;THETA=0.0313;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145213725 . AGG A 16867 PASS INDEL;BAVGPOST=0.937;BRSQ=0.750;LDAF=0.2531;AVGPOST=0.9371;RSQ=0.8072;ERATE=0.0236;THETA=0.0201;AC=495;AN=2184 GT:DS:GL:BD 0.22664835 0 1 145214480 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.951;BRSQ=0.613;LDAF=0.9637;AVGPOST=0.9676;RSQ=0.6515;ERATE=0.0025;THETA=0.0316;AC=2135;AN=2184 GT:DS:GL:BD 0.97756410 1 1 145215122 . G GT 1744 PASS INDEL;BAVGPOST=0.991;BRSQ=0.877;LDAF=0.0357;AVGPOST=0.9910;RSQ=0.8971;ERATE=0.0114;THETA=0.0125;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 145215468 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.834;LDAF=0.9829;AVGPOST=0.9926;RSQ=0.8489;ERATE=0.0004;THETA=0.0180;AC=2150;AN=2184 GT:DS:GL:BD 0.98443222 1 1 145217887 . TACA T 8 PASS INDEL;BAVGPOST=0.999;BRSQ=0.627;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4071;ERATE=0.0005;THETA=0.0274;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145218054 . A AC 9 PASS INDEL;BAVGPOST=0.999;BRSQ=0.756;LDAF=0.0028;AVGPOST=0.9983;RSQ=0.7428;ERATE=0.0011;THETA=0.0199;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145218303 . GT G 9838 PASS INDEL;BAVGPOST=0.773;BRSQ=0.338;LDAF=0.3240;AVGPOST=0.7883;RSQ=0.4735;ERATE=0.0266;THETA=0.0329;AC=500;AN=2184 GT:DS:GL:BD 0.22893773 0 1 145218393 . C CAT 184 PASS INDEL;BAVGPOST=0.981;BRSQ=0.471;LDAF=0.0249;AVGPOST=0.9686;RSQ=0.4108;ERATE=0.0069;THETA=0.0373;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145218501 rs71680605 CCTCT C 22636 PASS INDEL;BAVGPOST=0.734;BRSQ=0.291;LDAF=0.3146;AVGPOST=0.7676;RSQ=0.4469;ERATE=0.0279;THETA=0.0342;AC=454;AN=2184 GT:DS:GL:BD 0.20787546 0 1 145218707 . CAT C 14856 PASS INDEL;BAVGPOST=0.881;BRSQ=0.552;LDAF=0.2081;AVGPOST=0.8860;RSQ=0.6562;ERATE=0.0207;THETA=0.0194;AC=334;AN=2184 GT:DS:GL:BD 0.15293041 0 1 145219366 . GA G 201 PASS INDEL;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0018;AVGPOST=0.9996;RSQ=0.9081;ERATE=0.0004;THETA=0.0095;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145221030 . AGG A 557 PASS INDEL;BAVGPOST=0.997;BRSQ=0.805;LDAF=0.0069;AVGPOST=0.9970;RSQ=0.7992;ERATE=0.0012;THETA=0.0162;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145221136 . ATAAG A 939 PASS INDEL;BAVGPOST=0.990;BRSQ=0.712;LDAF=0.0204;AVGPOST=0.9870;RSQ=0.7169;ERATE=0.0072;THETA=0.0252;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 145225246 . T TA 248 PASS INDEL;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0027;AVGPOST=0.9995;RSQ=0.9240;ERATE=0.0005;THETA=0.0146;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145230899 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.930;BRSQ=0.730;LDAF=0.1863;AVGPOST=0.9372;RSQ=0.8040;ERATE=0.0044;THETA=0.0352;AC=364;AN=2184 GT:DS:GL:BD 0.16666667 0 1 145232522 . G GAC 9970 PASS INDEL;BAVGPOST=0.835;BRSQ=0.245;LDAF=0.8565;AVGPOST=0.7806;RSQ=0.2829;ERATE=0.0097;THETA=0.0102;AC=2113;AN=2184 GT:DS:GL:BD 0.96749085 1 1 145233398 . CAG C 466 PASS INDEL;BAVGPOST=0.983;BRSQ=0.591;LDAF=0.0226;AVGPOST=0.9784;RSQ=0.5779;ERATE=0.0027;THETA=0.0137;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 145234711 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.942;BRSQ=0.452;LDAF=0.9590;AVGPOST=0.9541;RSQ=0.5503;ERATE=0.0019;THETA=0.0179;AC=2139;AN=2184 GT:DS:GL:BD 0.97939563 1 1 145234952 . G GT 7006 PASS INDEL;BAVGPOST=0.881;BRSQ=0.591;LDAF=0.2228;AVGPOST=0.8748;RSQ=0.6488;ERATE=0.0243;THETA=0.0229;AC=395;AN=2184 GT:DS:GL:BD 0.18086080 0 1 145236968 . T TTCTCTC 292 PASS INDEL;BAVGPOST=0.956;BRSQ=0.211;LDAF=0.0453;AVGPOST=0.9234;RSQ=0.1966;ERATE=0.0091;THETA=0.0319;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 145237750 rs59767724 T TA 983 PASS INDEL;BAVGPOST=0.788;BRSQ=0.181;LDAF=0.1654;AVGPOST=0.7655;RSQ=0.2624;ERATE=0.0187;THETA=0.0263;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 145238359 . T TA 259 PASS INDEL;BAVGPOST=0.994;BRSQ=0.588;LDAF=0.0074;AVGPOST=0.9931;RSQ=0.6526;ERATE=0.0042;THETA=0.0124;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145238590 . GC G 39 PASS INDEL;BAVGPOST=0.998;BRSQ=0.276;LDAF=0.0043;AVGPOST=0.9926;RSQ=0.1931;ERATE=0.0012;THETA=0.0149;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145241173 . C CAG 22805 PASS INDEL;BAVGPOST=0.955;BRSQ=0.846;LDAF=0.2615;AVGPOST=0.9585;RSQ=0.8811;ERATE=0.0206;THETA=0.0270;AC=541;AN=2184 GT:DS:GL:BD 0.24771062 0 1 145243141 rs67156633 GGT G 10086 PASS INDEL;BAVGPOST=0.931;BRSQ=0.748;LDAF=0.1976;AVGPOST=0.9330;RSQ=0.8035;ERATE=0.0228;THETA=0.0186;AC=397;AN=2184 GT:DS:GL:BD 0.18177655 0 1 145243945 . CA C 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0004;THETA=0.0291;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145245013 . A AT 773 PASS INDEL;BAVGPOST=0.997;BRSQ=0.826;LDAF=0.0080;AVGPOST=0.9980;RSQ=0.8841;ERATE=0.0011;THETA=0.0190;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 145245880 . CAG C 4192 PASS INDEL;BAVGPOST=0.994;BRSQ=0.889;LDAF=0.0285;AVGPOST=0.9924;RSQ=0.8868;ERATE=0.0011;THETA=0.0112;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 145247429 . C CT 187582 PASS INDEL;BAVGPOST=0.972;BRSQ=0.906;LDAF=0.9779;AVGPOST=0.9927;RSQ=0.8766;ERATE=0.0009;THETA=0.0210;AC=2139;AN=2184 GT:DS:GL:BD 0.97939563 1 1 145249441 rs112809116 T TA 413 PASS INDEL;BAVGPOST=0.985;BRSQ=0.584;LDAF=0.0194;AVGPOST=0.9845;RSQ=0.6836;ERATE=0.0077;THETA=0.0116;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 145249451 . T TA 65 PASS INDEL;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0014;AVGPOST=0.9994;RSQ=0.8108;ERATE=0.0005;THETA=0.0118;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145250175 . A AT 143 PASS INDEL;BAVGPOST=0.976;BRSQ=0.412;LDAF=0.0171;AVGPOST=0.9821;RSQ=0.5929;ERATE=0.0004;THETA=0.0257;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 145250652 . AG A 215 PASS INDEL;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7872;ERATE=0.0005;THETA=0.0188;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145251253 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.788;LDAF=0.0782;AVGPOST=0.9737;RSQ=0.8601;ERATE=0.0008;THETA=0.0309;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 145251834 . A AAG 1909 PASS INDEL;BAVGPOST=0.953;BRSQ=0.596;LDAF=0.0544;AVGPOST=0.9604;RSQ=0.6800;ERATE=0.0018;THETA=0.0173;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 145252318 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.565;LDAF=0.9790;AVGPOST=0.9851;RSQ=0.7141;ERATE=0.0006;THETA=0.0129;AC=2146;AN=2184 GT:DS:GL:BD 0.98260075 1 1 145253020 . AT A 678 PASS INDEL;BAVGPOST=0.989;BRSQ=0.611;LDAF=0.0170;AVGPOST=0.9867;RSQ=0.6844;ERATE=0.0007;THETA=0.0105;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 145253913 . G GAT 7556 PASS INDEL;BAVGPOST=0.816;BRSQ=0.522;LDAF=0.1913;AVGPOST=0.8535;RSQ=0.6641;ERATE=0.0117;THETA=0.0212;AC=295;AN=2184 GT:DS:GL:BD 0.13507326 0 1 145254417 . TGTG T 728 PASS INDEL;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0056;AVGPOST=0.9996;RSQ=0.9648;ERATE=0.0017;THETA=0.0122;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145254652 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.853;BRSQ=0.731;LDAF=0.3957;AVGPOST=0.8596;RSQ=0.7732;ERATE=0.0121;THETA=0.0044;AC=820;AN=2184 GT:DS:GL:BD 0.37545788 0 1 145255338 . G GT 1323 PASS INDEL;BAVGPOST=0.957;BRSQ=0.626;LDAF=0.0694;AVGPOST=0.9468;RSQ=0.6458;ERATE=0.0105;THETA=0.0042;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 145255621 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.848;LDAF=0.0483;AVGPOST=0.9859;RSQ=0.8867;ERATE=0.0008;THETA=0.0107;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 145256308 . TCTC T 263 PASS INDEL;BAVGPOST=0.994;BRSQ=0.465;LDAF=0.0082;AVGPOST=0.9891;RSQ=0.3933;ERATE=0.0022;THETA=0.0052;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145257435 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.885;LDAF=0.9762;AVGPOST=0.9882;RSQ=0.8141;ERATE=0.0008;THETA=0.0063;AC=2140;AN=2184 GT:DS:GL:BD 0.97985345 1 1 145257483 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.709;LDAF=0.0053;AVGPOST=0.9956;RSQ=0.6247;ERATE=0.0020;THETA=0.0177;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145257512 . C CAT 1884 PASS INDEL;BAVGPOST=0.952;BRSQ=0.701;LDAF=0.0807;AVGPOST=0.9608;RSQ=0.7893;ERATE=0.0075;THETA=0.0106;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 145257524 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.713;LDAF=0.0154;AVGPOST=0.9928;RSQ=0.8209;ERATE=0.0008;THETA=0.0044;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 145257764 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.723;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.5373;ERATE=0.0007;THETA=0.0051;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145257833 . C CT 19045 PASS INDEL;BAVGPOST=0.962;BRSQ=0.868;LDAF=0.1497;AVGPOST=0.9734;RSQ=0.9089;ERATE=0.0033;THETA=0.0086;AC=311;AN=2184 GT:DS:GL:BD 0.14239927 0 1 145257855 . G GA 84 PASS INDEL;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7921;ERATE=0.0003;THETA=0.0109;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145259378 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.862;LDAF=0.9733;AVGPOST=0.9830;RSQ=0.7498;ERATE=0.0010;THETA=0.0176;AC=2142;AN=2184 GT:DS:GL:BD 0.98076922 1 1 145262746 . CT C 149 PASS INDEL;BAVGPOST=0.997;BRSQ=0.584;LDAF=0.0042;AVGPOST=0.9972;RSQ=0.7063;ERATE=0.0005;THETA=0.0189;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145263723 . CT C 53 PASS INDEL;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0059;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145263803 rs10560332 CAG C 4809 PASS INDEL;BAVGPOST=0.955;BRSQ=0.742;LDAF=0.0975;AVGPOST=0.9532;RSQ=0.7844;ERATE=0.0057;THETA=0.0189;AC=170;AN=2184 GT:DS:GL:BD 0.07783883 0 1 145264649 rs68063332 TC T 2906 PASS INDEL;BAVGPOST=0.987;BRSQ=0.910;LDAF=0.0452;AVGPOST=0.9918;RSQ=0.9295;ERATE=0.0005;THETA=0.0073;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 145265573 . G GA 1331 PASS INDEL;BAVGPOST=0.985;BRSQ=0.736;LDAF=0.0319;AVGPOST=0.9807;RSQ=0.7376;ERATE=0.0077;THETA=0.0153;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 145266574 . GC G 168 PASS INDEL;BAVGPOST=0.999;BRSQ=0.765;LDAF=0.0025;AVGPOST=0.9978;RSQ=0.6058;ERATE=0.0010;THETA=0.0097;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145268873 . GAAC G 9742 PASS INDEL;BAVGPOST=0.929;BRSQ=0.692;LDAF=0.1930;AVGPOST=0.9172;RSQ=0.7224;ERATE=0.0326;THETA=0.0116;AC=334;AN=2184 GT:DS:GL:BD 0.15293041 0 1 145269200 . ATAAG A 275 PASS INDEL;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0026;AVGPOST=0.9992;RSQ=0.8842;ERATE=0.0010;THETA=0.0297;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145272628 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.876;BRSQ=0.761;LDAF=0.5018;AVGPOST=0.8815;RSQ=0.8027;ERATE=0.0063;THETA=0.0137;AC=1083;AN=2184 GT:DS:GL:BD 0.49587911 0 1 145273899 . CT C 2005 PASS INDEL;BAVGPOST=0.994;BRSQ=0.845;LDAF=0.0205;AVGPOST=0.9933;RSQ=0.8707;ERATE=0.0008;THETA=0.0116;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 145278831 rs72238088 T TTCTG 8360 PASS INDEL;BAVGPOST=0.676;BRSQ=0.238;LDAF=0.3201;AVGPOST=0.6960;RSQ=0.3613;ERATE=0.0242;THETA=0.0114;AC=432;AN=2184 GT:DS:GL:BD 0.19780220 0 1 145280061 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.908;LDAF=0.9865;AVGPOST=0.9965;RSQ=0.8887;ERATE=0.0004;THETA=0.0219;AC=2157;AN=2184 GT:DS:GL:BD 0.98763734 1 1 145280423 . TAG T 162 PASS INDEL;BAVGPOST=0.998;BRSQ=0.549;LDAF=0.0049;AVGPOST=0.9928;RSQ=0.4004;ERATE=0.0009;THETA=0.0095;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145281952 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0075;AVGPOST=0.9989;RSQ=0.9458;ERATE=0.0020;THETA=0.0029;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 145281970 rs59357820 GA G 129 PASS INDEL;BAVGPOST=0.999;BRSQ=0.822;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.8099;ERATE=0.0007;THETA=0.0131;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145283007 . GT G 66 PASS INDEL;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6141;ERATE=0.0005;THETA=0.0244;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145284587 . AATT A 343 PASS INDEL;BAVGPOST=0.995;BRSQ=0.484;LDAF=0.0065;AVGPOST=0.9905;RSQ=0.3377;ERATE=0.0018;THETA=0.0069;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145286602 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.856;BRSQ=0.725;LDAF=0.4915;AVGPOST=0.8507;RSQ=0.7603;ERATE=0.0059;THETA=0.0199;AC=1057;AN=2184 GT:DS:GL:BD 0.48397437 0 1 145286829 . CTT C 566 PASS INDEL;BAVGPOST=0.997;BRSQ=0.833;LDAF=0.0070;AVGPOST=0.9976;RSQ=0.8844;ERATE=0.0005;THETA=0.0072;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145286839 . C CT 10309 PASS INDEL;BAVGPOST=0.794;BRSQ=0.193;LDAF=0.8642;AVGPOST=0.8079;RSQ=0.3368;ERATE=0.0018;THETA=0.0090;AC=2035;AN=2184 GT:DS:GL:BD 0.93177658 1 1 145287760 . CT C 134 PASS INDEL;BAVGPOST=0.999;BRSQ=0.710;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6277;ERATE=0.0010;THETA=0.0114;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145292883 . G GAT 176 PASS INDEL;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7444;ERATE=0.0008;THETA=0.0136;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145294792 rs66828265 AATCTT A 17517 PASS INDEL;BAVGPOST=0.846;BRSQ=0.470;LDAF=0.2638;AVGPOST=0.8375;RSQ=0.5531;ERATE=0.0310;THETA=0.0071;AC=400;AN=2184 GT:DS:GL:BD 0.18315019 0 1 145295005 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.852;BRSQ=0.423;LDAF=0.8977;AVGPOST=0.8909;RSQ=0.5593;ERATE=0.0050;THETA=0.0109;AC=2030;AN=2184 GT:DS:GL:BD 0.92948717 1 1 145295017 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.857;BRSQ=0.438;LDAF=0.9185;AVGPOST=0.9341;RSQ=0.6772;ERATE=0.0018;THETA=0.0118;AC=2038;AN=2184 GT:DS:GL:BD 0.93315017 1 1 145295862 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.958;BRSQ=0.829;LDAF=0.9765;AVGPOST=0.9887;RSQ=0.8172;ERATE=0.0007;THETA=0.0115;AC=2143;AN=2184 GT:DS:GL:BD 0.98122710 1 1 145295882 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.947;BRSQ=0.629;LDAF=0.0779;AVGPOST=0.9452;RSQ=0.6857;ERATE=0.0055;THETA=0.0122;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 145296403 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.679;LDAF=0.0470;AVGPOST=0.9689;RSQ=0.7313;ERATE=0.0068;THETA=0.0221;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 145296424 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9882;ERATE=0.0004;THETA=0.0177;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145296451 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.575;LDAF=0.0081;AVGPOST=0.9941;RSQ=0.7163;ERATE=0.0019;THETA=0.0226;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145297400 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.859;BRSQ=0.595;LDAF=0.2467;AVGPOST=0.8648;RSQ=0.6977;ERATE=0.0166;THETA=0.0158;AC=465;AN=2184 GT:DS:GL:BD 0.21291208 0 1 145297788 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.877;LDAF=0.2113;AVGPOST=0.9751;RSQ=0.9299;ERATE=0.0012;THETA=0.0054;AC=450;AN=2184 GT:DS:GL:BD 0.20604396 0 1 145297895 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.745;LDAF=0.0122;AVGPOST=0.9958;RSQ=0.8575;ERATE=0.0007;THETA=0.0125;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 145298876 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.730;BRSQ=0.274;LDAF=0.3481;AVGPOST=0.7826;RSQ=0.4482;ERATE=0.0290;THETA=0.0067;AC=605;AN=2184 GT:DS:GL:BD 0.27701464 0 1 145298892 rs71077257 C CA 333 PASS INDEL;BAVGPOST=0.770;BRSQ=0.121;LDAF=0.1718;AVGPOST=0.7405;RSQ=0.2142;ERATE=0.0149;THETA=0.0089;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 145298970 rs66835490 A AT 17956 PASS INDEL;BAVGPOST=0.695;BRSQ=0.290;LDAF=0.3726;AVGPOST=0.7668;RSQ=0.4385;ERATE=0.0314;THETA=0.0167;AC=641;AN=2184 GT:DS:GL:BD 0.29349816 0 1 145299161 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.471;LDAF=0.0307;AVGPOST=0.9716;RSQ=0.6468;ERATE=0.0010;THETA=0.0127;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 145299214 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.815;BRSQ=0.458;LDAF=0.2477;AVGPOST=0.8330;RSQ=0.5701;ERATE=0.0138;THETA=0.0085;AC=416;AN=2184 GT:DS:GL:BD 0.19047619 0 1 145299499 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.930;BRSQ=0.517;LDAF=0.0516;AVGPOST=0.9536;RSQ=0.6239;ERATE=0.0052;THETA=0.0075;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 145299533 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.955;BRSQ=0.562;LDAF=0.0541;AVGPOST=0.9568;RSQ=0.6620;ERATE=0.0104;THETA=0.0145;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 145300087 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.658;BRSQ=0.172;LDAF=0.8493;AVGPOST=0.8048;RSQ=0.3918;ERATE=0.0043;THETA=0.0058;AC=2025;AN=2184 GT:DS:GL:BD 0.92719781 1 1 145300096 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.653;BRSQ=0.175;LDAF=0.7633;AVGPOST=0.6852;RSQ=0.2812;ERATE=0.0151;THETA=0.0156;AC=1949;AN=2184 GT:DS:GL:BD 0.89239925 1 1 145301802 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.791;BRSQ=0.475;LDAF=0.2743;AVGPOST=0.8131;RSQ=0.5931;ERATE=0.0203;THETA=0.0175;AC=475;AN=2184 GT:DS:GL:BD 0.21749084 0 1 145302505 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.893;BRSQ=0.561;LDAF=0.9200;AVGPOST=0.9399;RSQ=0.6898;ERATE=0.0037;THETA=0.0171;AC=2038;AN=2184 GT:DS:GL:BD 0.93315017 1 1 145302793 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0003;THETA=0.0157;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145302940 rs67070475 C CA 5186 PASS INDEL;BAVGPOST=0.799;BRSQ=0.419;LDAF=0.1656;AVGPOST=0.8735;RSQ=0.6634;ERATE=0.0020;THETA=0.0264;AC=301;AN=2184 GT:DS:GL:BD 0.13782051 0 1 145303971 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.884;BRSQ=0.775;LDAF=0.3628;AVGPOST=0.8924;RSQ=0.8300;ERATE=0.0217;THETA=0.0086;AC=791;AN=2184 GT:DS:GL:BD 0.36217949 0 1 145308271 . A AT 524 PASS INDEL;BAVGPOST=0.401;BRSQ=0.025;LDAF=0.7346;AVGPOST=0.6574;RSQ=0.2450;ERATE=0.0146;THETA=0.0129;AC=1917;AN=2184 GT:DS:GL:BD 0.87774724 1 1 145310989 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8240;ERATE=0.0006;THETA=0.0133;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145311785 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.881;BRSQ=0.752;LDAF=0.3305;AVGPOST=0.8820;RSQ=0.7870;ERATE=0.0245;THETA=0.0171;AC=710;AN=2184 GT:DS:GL:BD 0.32509157 0 1 145311815 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.857;LDAF=0.1519;AVGPOST=0.9583;RSQ=0.8507;ERATE=0.0047;THETA=0.0055;AC=301;AN=2184 GT:DS:GL:BD 0.13782051 0 1 145311824 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.658;LDAF=0.0077;AVGPOST=0.9949;RSQ=0.7114;ERATE=0.0009;THETA=0.0057;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145311828 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.933;BRSQ=0.647;LDAF=0.9366;AVGPOST=0.9590;RSQ=0.7286;ERATE=0.0088;THETA=0.0057;AC=2078;AN=2184 GT:DS:GL:BD 0.95146519 1 1 145311855 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.766;LDAF=0.0125;AVGPOST=0.9877;RSQ=0.6182;ERATE=0.0045;THETA=0.0031;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 145311869 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.616;LDAF=0.0549;AVGPOST=0.9526;RSQ=0.6254;ERATE=0.0168;THETA=0.0025;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 145311885 . CT C 12 PASS INDEL;BAVGPOST=0.999;BRSQ=0.544;LDAF=0.0024;AVGPOST=0.9964;RSQ=0.3395;ERATE=0.0007;THETA=0.0132;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145312184 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.807;LDAF=0.0664;AVGPOST=0.9840;RSQ=0.8956;ERATE=0.0010;THETA=0.0166;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 145312198 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.672;LDAF=0.0074;AVGPOST=0.9947;RSQ=0.7121;ERATE=0.0004;THETA=0.0049;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 145312205 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.942;BRSQ=0.875;LDAF=0.1966;AVGPOST=0.9631;RSQ=0.9281;ERATE=0.0023;THETA=0.0064;AC=421;AN=2184 GT:DS:GL:BD 0.19276556 0 1 145312206 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.817;LDAF=0.0205;AVGPOST=0.9923;RSQ=0.8431;ERATE=0.0007;THETA=0.0048;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 145312220 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.906;BRSQ=0.858;LDAF=0.4280;AVGPOST=0.9128;RSQ=0.8852;ERATE=0.0011;THETA=0.0101;AC=933;AN=2184 GT:DS:GL:BD 0.42719781 0 1 145312224 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.797;LDAF=0.0213;AVGPOST=0.9915;RSQ=0.8477;ERATE=0.0009;THETA=0.0017;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 145312252 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.657;LDAF=0.0019;AVGPOST=0.9982;RSQ=0.6583;ERATE=0.0006;THETA=0.0137;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145312268 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7863;ERATE=0.0004;THETA=0.0040;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145312453 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.510;LDAF=0.0322;AVGPOST=0.9677;RSQ=0.6108;ERATE=0.0017;THETA=0.0043;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 145312468 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.613;LDAF=0.0078;AVGPOST=0.9929;RSQ=0.6245;ERATE=0.0026;THETA=0.0116;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145312489 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.728;LDAF=0.0049;AVGPOST=0.9966;RSQ=0.7348;ERATE=0.0005;THETA=0.0081;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145312512 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.587;LDAF=0.0025;AVGPOST=0.9979;RSQ=0.6648;ERATE=0.0006;THETA=0.0111;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145312597 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.909;BRSQ=0.750;LDAF=0.2162;AVGPOST=0.9155;RSQ=0.8175;ERATE=0.0013;THETA=0.0291;AC=435;AN=2184 GT:DS:GL:BD 0.19917582 0 1 145312635 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.812;LDAF=0.0055;AVGPOST=0.9950;RSQ=0.6796;ERATE=0.0006;THETA=0.0125;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145312640 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.543;LDAF=0.0108;AVGPOST=0.9883;RSQ=0.6081;ERATE=0.0049;THETA=0.0140;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 145312649 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.813;LDAF=0.0055;AVGPOST=0.9957;RSQ=0.7252;ERATE=0.0006;THETA=0.0110;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145313190 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.682;LDAF=0.0197;AVGPOST=0.9872;RSQ=0.7197;ERATE=0.0023;THETA=0.0094;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 145313231 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.935;BRSQ=0.495;LDAF=0.0790;AVGPOST=0.9212;RSQ=0.5459;ERATE=0.0170;THETA=0.0159;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 145313240 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.840;LDAF=0.1381;AVGPOST=0.9460;RSQ=0.7844;ERATE=0.0030;THETA=0.0295;AC=257;AN=2184 GT:DS:GL:BD 0.11767399 0 1 145318507 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.673;LDAF=0.0407;AVGPOST=0.9671;RSQ=0.6619;ERATE=0.0033;THETA=0.0117;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 145320688 . A AGT 538 PASS INDEL;BAVGPOST=0.499;BRSQ=0.035;LDAF=0.2428;AVGPOST=0.7160;RSQ=0.3312;ERATE=0.0059;THETA=0.0070;AC=289;AN=2184 GT:DS:GL:BD 0.13232601 0 1 145320693 . G GTT 87 PASS INDEL;BAVGPOST=0.603;BRSQ=0.026;LDAF=0.2211;AVGPOST=0.6501;RSQ=0.1291;ERATE=0.0170;THETA=0.0052;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 145325891 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.955;BRSQ=0.294;LDAF=0.0504;AVGPOST=0.9231;RSQ=0.3193;ERATE=0.0027;THETA=0.0269;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 145325902 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.937;BRSQ=0.262;LDAF=0.0564;AVGPOST=0.9177;RSQ=0.3406;ERATE=0.0044;THETA=0.0135;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 145325941 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.917;BRSQ=0.647;LDAF=0.1642;AVGPOST=0.8860;RSQ=0.6279;ERATE=0.0083;THETA=0.0108;AC=279;AN=2184 GT:DS:GL:BD 0.12774725 0 1 145325981 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.822;LDAF=0.1370;AVGPOST=0.9493;RSQ=0.7995;ERATE=0.0063;THETA=0.0362;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 145325999 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.662;LDAF=0.0091;AVGPOST=0.9926;RSQ=0.6638;ERATE=0.0009;THETA=0.0142;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 145327379 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.772;BRSQ=0.576;LDAF=0.4628;AVGPOST=0.7755;RSQ=0.6336;ERATE=0.0144;THETA=0.0149;AC=989;AN=2184 GT:DS:GL:BD 0.45283884 0 1 145327393 . T TC 588 PASS INDEL;BAVGPOST=0.944;BRSQ=0.495;LDAF=0.0518;AVGPOST=0.9599;RSQ=0.6783;ERATE=0.0010;THETA=0.0209;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 145327394 . T TC 2387 PASS INDEL;BAVGPOST=0.925;BRSQ=0.509;LDAF=0.0879;AVGPOST=0.9265;RSQ=0.6199;ERATE=0.0024;THETA=0.0250;AC=131;AN=2184 GT:DS:GL:BD 0.05998169 0 1 145327395 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.947;BRSQ=0.479;LDAF=0.0631;AVGPOST=0.9322;RSQ=0.5286;ERATE=0.0057;THETA=0.0089;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 145327808 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.368;LDAF=0.0233;AVGPOST=0.9694;RSQ=0.4259;ERATE=0.0012;THETA=0.0119;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145328113 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.489;BRSQ=0.260;LDAF=0.5428;AVGPOST=0.6495;RSQ=0.4709;ERATE=0.0046;THETA=0.0076;AC=1319;AN=2184 GT:DS:GL:BD 0.60393775 1 1 145328116 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.833;BRSQ=0.537;LDAF=0.2103;AVGPOST=0.8229;RSQ=0.5784;ERATE=0.0150;THETA=0.0052;AC=304;AN=2184 GT:DS:GL:BD 0.13919415 0 1 145328125 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.302;LDAF=0.0136;AVGPOST=0.9815;RSQ=0.3881;ERATE=0.0010;THETA=0.0226;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145328175 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.443;LDAF=0.0258;AVGPOST=0.9696;RSQ=0.4919;ERATE=0.0026;THETA=0.0036;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 145328200 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.796;BRSQ=0.662;LDAF=0.3680;AVGPOST=0.8245;RSQ=0.7346;ERATE=0.0127;THETA=0.0247;AC=739;AN=2184 GT:DS:GL:BD 0.33836997 0 1 145328208 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.873;BRSQ=0.597;LDAF=0.2434;AVGPOST=0.8701;RSQ=0.6831;ERATE=0.0121;THETA=0.0100;AC=445;AN=2184 GT:DS:GL:BD 0.20375457 0 1 145328260 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.929;BRSQ=0.517;LDAF=0.0787;AVGPOST=0.9295;RSQ=0.6197;ERATE=0.0019;THETA=0.0156;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 145328282 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.374;LDAF=0.0032;AVGPOST=0.9954;RSQ=0.3560;ERATE=0.0013;THETA=0.0342;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145328400 . AGAAGAC A 183 PASS INDEL;BAVGPOST=0.951;BRSQ=0.263;LDAF=0.0451;AVGPOST=0.9356;RSQ=0.3650;ERATE=0.0048;THETA=0.0210;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 145328793 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.642;BRSQ=0.323;LDAF=0.3333;AVGPOST=0.6554;RSQ=0.3642;ERATE=0.0152;THETA=0.0083;AC=476;AN=2184 GT:DS:GL:BD 0.21794872 0 1 145328809 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.735;BRSQ=0.182;LDAF=0.8376;AVGPOST=0.7777;RSQ=0.3575;ERATE=0.0047;THETA=0.0064;AC=2033;AN=2184 GT:DS:GL:BD 0.93086082 1 1 145330601 . T TA 45 PASS INDEL;BAVGPOST=0.992;BRSQ=0.510;LDAF=0.0124;AVGPOST=0.9843;RSQ=0.4493;ERATE=0.0031;THETA=0.0145;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145330603 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.958;BRSQ=0.613;LDAF=0.0549;AVGPOST=0.9611;RSQ=0.6948;ERATE=0.0023;THETA=0.0278;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 145331013 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.260;LDAF=0.0528;AVGPOST=0.9146;RSQ=0.2698;ERATE=0.0040;THETA=0.0141;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 145333562 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.655;BRSQ=0.211;LDAF=0.3106;AVGPOST=0.6511;RSQ=0.3084;ERATE=0.0132;THETA=0.0031;AC=354;AN=2184 GT:DS:GL:BD 0.16208792 0 1 145333570 . GTT G 955 PASS INDEL;BAVGPOST=0.627;BRSQ=0.094;LDAF=0.2505;AVGPOST=0.6590;RSQ=0.2519;ERATE=0.0219;THETA=0.0240;AC=204;AN=2184 GT:DS:GL:BD 0.09340660 0 1 145333580 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.644;BRSQ=0.269;LDAF=0.3614;AVGPOST=0.6804;RSQ=0.4388;ERATE=0.0104;THETA=0.0165;AC=571;AN=2184 GT:DS:GL:BD 0.26144689 0 1 145350738 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.884;BRSQ=0.209;LDAF=0.1000;AVGPOST=0.8492;RSQ=0.2730;ERATE=0.0135;THETA=0.0221;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 145352494 . GTCTT G 502 PASS INDEL;BAVGPOST=0.902;BRSQ=0.198;LDAF=0.1213;AVGPOST=0.8059;RSQ=0.2204;ERATE=0.0148;THETA=0.0064;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 145354808 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.956;BRSQ=0.206;LDAF=0.0631;AVGPOST=0.8920;RSQ=0.2219;ERATE=0.0029;THETA=0.0159;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 145354810 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.157;LDAF=0.0613;AVGPOST=0.8911;RSQ=0.1968;ERATE=0.0061;THETA=0.0200;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 145354819 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.778;BRSQ=0.178;LDAF=0.1749;AVGPOST=0.7614;RSQ=0.3331;ERATE=0.0177;THETA=0.0096;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 145355415 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.524;BRSQ=0.096;LDAF=0.3479;AVGPOST=0.6308;RSQ=0.2549;ERATE=0.0319;THETA=0.0101;AC=409;AN=2184 GT:DS:GL:BD 0.18727106 0 1 145356157 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.214;LDAF=0.0343;AVGPOST=0.9406;RSQ=0.2415;ERATE=0.0042;THETA=0.0156;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145357158 . TTC T 2893 PASS INDEL;BAVGPOST=0.646;BRSQ=0.145;LDAF=0.2789;AVGPOST=0.6796;RSQ=0.2786;ERATE=0.0229;THETA=0.0069;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 145359044 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.909;BRSQ=0.369;LDAF=0.1140;AVGPOST=0.8491;RSQ=0.3530;ERATE=0.0198;THETA=0.0161;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 145359084 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.872;BRSQ=0.322;LDAF=0.1179;AVGPOST=0.8616;RSQ=0.4056;ERATE=0.0182;THETA=0.0199;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 145359308 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.793;LDAF=0.0242;AVGPOST=0.9915;RSQ=0.8580;ERATE=0.0006;THETA=0.0138;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 145359354 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.757;BRSQ=0.505;LDAF=0.4007;AVGPOST=0.7904;RSQ=0.6296;ERATE=0.0152;THETA=0.0274;AC=830;AN=2184 GT:DS:GL:BD 0.38003662 0 1 145360608 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.919;BRSQ=0.366;LDAF=0.0945;AVGPOST=0.8838;RSQ=0.4676;ERATE=0.0016;THETA=0.0101;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 145360626 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.295;LDAF=0.0233;AVGPOST=0.9607;RSQ=0.2513;ERATE=0.0039;THETA=0.0149;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145361115 . GC G 5432 PASS INDEL;BAVGPOST=0.491;BRSQ=0.096;LDAF=0.3341;AVGPOST=0.6150;RSQ=0.2302;ERATE=0.0179;THETA=0.0121;AC=342;AN=2184 GT:DS:GL:BD 0.15659341 0 1 145361316 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.769;BRSQ=0.204;LDAF=0.2319;AVGPOST=0.6949;RSQ=0.2964;ERATE=0.0166;THETA=0.0175;AC=179;AN=2184 GT:DS:GL:BD 0.08195971 0 1 145363418 . T TTC 556 PASS INDEL;BAVGPOST=0.706;BRSQ=0.087;LDAF=0.2191;AVGPOST=0.6665;RSQ=0.1614;ERATE=0.0206;THETA=0.0237;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 145365085 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.530;LDAF=0.0012;AVGPOST=0.9983;RSQ=0.3118;ERATE=0.0007;THETA=0.0121;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145365097 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.945;BRSQ=0.544;LDAF=0.0665;AVGPOST=0.9350;RSQ=0.5737;ERATE=0.0066;THETA=0.0290;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 145365113 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.946;BRSQ=0.500;LDAF=0.0638;AVGPOST=0.9359;RSQ=0.5362;ERATE=0.0123;THETA=0.0260;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 145365193 . CA C 271 PASS INDEL;BAVGPOST=0.983;BRSQ=0.244;LDAF=0.0291;AVGPOST=0.9499;RSQ=0.2269;ERATE=0.0036;THETA=0.0199;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145366587 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.413;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5571;ERATE=0.0004;THETA=0.0306;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145366601 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.955;BRSQ=0.526;LDAF=0.0484;AVGPOST=0.9538;RSQ=0.6380;ERATE=0.0051;THETA=0.0297;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 145366672 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.646;LDAF=0.0036;AVGPOST=0.9943;RSQ=0.3485;ERATE=0.0004;THETA=0.0138;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145366694 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.571;LDAF=0.0058;AVGPOST=0.9943;RSQ=0.5619;ERATE=0.0015;THETA=0.0115;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145367080 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.919;LDAF=0.0986;AVGPOST=0.9802;RSQ=0.9057;ERATE=0.0006;THETA=0.0085;AC=204;AN=2184 GT:DS:GL:BD 0.09340660 0 1 145367191 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.844;LDAF=0.0651;AVGPOST=0.9793;RSQ=0.8681;ERATE=0.0050;THETA=0.0245;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 145367196 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.793;LDAF=0.0436;AVGPOST=0.9798;RSQ=0.8147;ERATE=0.0007;THETA=0.0070;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 145367453 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.731;LDAF=0.0467;AVGPOST=0.9764;RSQ=0.7999;ERATE=0.0106;THETA=0.0048;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 145367657 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.863;BRSQ=0.707;LDAF=0.3392;AVGPOST=0.8786;RSQ=0.7783;ERATE=0.0110;THETA=0.0535;AC=683;AN=2184 GT:DS:GL:BD 0.31272894 0 1 145367679 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6404;ERATE=0.0004;THETA=0.0255;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145368369 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.956;LDAF=0.0422;AVGPOST=0.9956;RSQ=0.9571;ERATE=0.0049;THETA=0.0165;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 145369704 . GC G 23295 PASS INDEL;BAVGPOST=0.940;BRSQ=0.824;LDAF=0.2540;AVGPOST=0.9337;RSQ=0.8251;ERATE=0.0014;THETA=0.0357;AC=516;AN=2184 GT:DS:GL:BD 0.23626374 0 1 145372302 . TAAAA T 258 PASS INDEL;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.6942;ERATE=0.0004;THETA=0.0051;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145373568 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5022;ERATE=0.0004;THETA=0.0279;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145373591 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.776;LDAF=0.0018;AVGPOST=0.9986;RSQ=0.6562;ERATE=0.0006;THETA=0.0195;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145374029 . AG A 101 PASS INDEL;BAVGPOST=0.991;BRSQ=0.357;LDAF=0.0267;AVGPOST=0.9563;RSQ=0.2969;ERATE=0.0015;THETA=0.0271;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145374502 . A AT 717 PASS INDEL;BAVGPOST=0.796;BRSQ=0.107;LDAF=0.1871;AVGPOST=0.7069;RSQ=0.1816;ERATE=0.0194;THETA=0.0181;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 145374886 rs58955972 C CAA 495 PASS INDEL;BAVGPOST=0.828;BRSQ=0.295;LDAF=0.1238;AVGPOST=0.8532;RSQ=0.4756;ERATE=0.0046;THETA=0.0091;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 145375103 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.940;BRSQ=0.878;LDAF=0.1934;AVGPOST=0.9296;RSQ=0.8406;ERATE=0.0016;THETA=0.0195;AC=389;AN=2184 GT:DS:GL:BD 0.17811355 0 1 145375875 . CTT C 4299 PASS INDEL;BAVGPOST=0.953;BRSQ=0.871;LDAF=0.1632;AVGPOST=0.9297;RSQ=0.8193;ERATE=0.0007;THETA=0.0129;AC=327;AN=2184 GT:DS:GL:BD 0.14972527 0 1 145375932 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.665;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.6014;ERATE=0.0005;THETA=0.0135;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145375943 . C CT 118 PASS INDEL;BAVGPOST=0.996;BRSQ=0.751;LDAF=0.0132;AVGPOST=0.9889;RSQ=0.6313;ERATE=0.0052;THETA=0.0080;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145376116 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.786;LDAF=0.9592;AVGPOST=0.9642;RSQ=0.6512;ERATE=0.0032;THETA=0.0075;AC=2123;AN=2184 GT:DS:GL:BD 0.97206962 1 1 145376198 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.900;LDAF=0.2176;AVGPOST=0.9523;RSQ=0.8929;ERATE=0.0007;THETA=0.0022;AC=478;AN=2184 GT:DS:GL:BD 0.21886447 0 1 145376218 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.705;LDAF=0.0039;AVGPOST=0.9983;RSQ=0.8229;ERATE=0.0004;THETA=0.0125;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145376242 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0134;AVGPOST=0.9987;RSQ=0.9537;ERATE=0.0004;THETA=0.0133;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 145376254 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.9799;AVGPOST=0.9977;RSQ=0.9512;ERATE=0.0004;THETA=0.0011;AC=2142;AN=2184 GT:DS:GL:BD 0.98076922 1 1 145376405 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.900;LDAF=0.2030;AVGPOST=0.9703;RSQ=0.9230;ERATE=0.0008;THETA=0.0059;AC=442;AN=2184 GT:DS:GL:BD 0.20238096 0 1 145377197 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.9808;AVGPOST=0.9978;RSQ=0.9535;ERATE=0.0003;THETA=0.0011;AC=2144;AN=2184 GT:DS:GL:BD 0.98168498 1 1 145377768 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.719;LDAF=0.0187;AVGPOST=0.9831;RSQ=0.6187;ERATE=0.0040;THETA=0.0056;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 145377773 rs11355072 CT C 449 PASS INDEL;BAVGPOST=0.979;BRSQ=0.668;LDAF=0.0429;AVGPOST=0.9610;RSQ=0.5997;ERATE=0.0097;THETA=0.0074;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 145377879 . T TG 73 PASS INDEL;BAVGPOST=0.991;BRSQ=0.611;LDAF=0.0183;AVGPOST=0.9793;RSQ=0.5312;ERATE=0.0060;THETA=0.0022;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 145378016 . G GCCT 542 PASS INDEL;BAVGPOST=0.952;BRSQ=0.319;LDAF=0.0646;AVGPOST=0.9044;RSQ=0.3213;ERATE=0.0091;THETA=0.0040;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 145378044 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.854;BRSQ=0.589;LDAF=0.2650;AVGPOST=0.8123;RSQ=0.5844;ERATE=0.0284;THETA=0.0071;AC=448;AN=2184 GT:DS:GL:BD 0.20512821 0 1 145380842 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.921;LDAF=0.9595;AVGPOST=0.9911;RSQ=0.9109;ERATE=0.0010;THETA=0.0030;AC=2100;AN=2184 GT:DS:GL:BD 0.96153843 1 1 145381651 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.909;LDAF=0.1286;AVGPOST=0.9803;RSQ=0.9253;ERATE=0.0005;THETA=0.0013;AC=281;AN=2184 GT:DS:GL:BD 0.12866300 0 1 145381652 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.741;LDAF=0.0174;AVGPOST=0.9911;RSQ=0.8071;ERATE=0.0008;THETA=0.0010;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 145381735 rs71582795 TA T 10222 PASS INDEL;BAVGPOST=0.939;BRSQ=0.749;LDAF=0.1417;AVGPOST=0.9465;RSQ=0.8221;ERATE=0.0005;THETA=0.0020;AC=287;AN=2184 GT:DS:GL:BD 0.13141026 0 1 145381767 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.949;BRSQ=0.809;LDAF=0.1844;AVGPOST=0.9514;RSQ=0.8578;ERATE=0.0010;THETA=0.0081;AC=392;AN=2184 GT:DS:GL:BD 0.17948718 0 1 145381841 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.915;BRSQ=0.684;LDAF=0.1805;AVGPOST=0.9165;RSQ=0.7553;ERATE=0.0035;THETA=0.0157;AC=372;AN=2184 GT:DS:GL:BD 0.17032968 0 1 145382248 . C CT 264 PASS INDEL;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0045;AVGPOST=0.9986;RSQ=0.8611;ERATE=0.0004;THETA=0.0047;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145382328 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.770;LDAF=0.0111;AVGPOST=0.9931;RSQ=0.7511;ERATE=0.0049;THETA=0.0012;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 145382340 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0018;AVGPOST=0.9994;RSQ=0.8711;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145382341 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145382358 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.860;LDAF=0.0038;AVGPOST=0.9980;RSQ=0.7895;ERATE=0.0026;THETA=0.0119;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145382407 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.851;LDAF=0.9715;AVGPOST=0.9904;RSQ=0.8725;ERATE=0.0007;THETA=0.0020;AC=2119;AN=2184 GT:DS:GL:BD 0.97023809 1 1 145382617 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.649;LDAF=0.0355;AVGPOST=0.9676;RSQ=0.6226;ERATE=0.0088;THETA=0.0035;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 145382633 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.875;LDAF=0.9806;AVGPOST=0.9928;RSQ=0.8511;ERATE=0.0009;THETA=0.0007;AC=2145;AN=2184 GT:DS:GL:BD 0.98214287 1 1 145382743 rs11331021 GA G 69199 PASS INDEL;BAVGPOST=0.982;BRSQ=0.624;LDAF=0.9692;AVGPOST=0.9743;RSQ=0.6352;ERATE=0.0057;THETA=0.0085;AC=2138;AN=2184 GT:DS:GL:BD 0.97893775 1 1 145382774 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0004;THETA=0.0082;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145382781 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5922;ERATE=0.0005;THETA=0.0117;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145382789 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9280;ERATE=0.0004;THETA=0.0074;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145382826 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0029;AVGPOST=0.9980;RSQ=0.7260;ERATE=0.0006;THETA=0.0162;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145382831 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0081;AVGPOST=0.9982;RSQ=0.8967;ERATE=0.0003;THETA=0.0011;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 145382835 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145382853 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.661;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7540;ERATE=0.0004;THETA=0.0073;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145382853 . TC T 1927 PASS INDEL;BAVGPOST=0.994;BRSQ=0.913;LDAF=0.0182;AVGPOST=0.9949;RSQ=0.8920;ERATE=0.0006;THETA=0.0066;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 145382877 . G GC 111 PASS INDEL;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5390;ERATE=0.0005;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145382908 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5514;ERATE=0.0004;THETA=0.0056;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145382916 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145382926 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0004;THETA=0.0097;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145382975 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5798;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145383066 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8879;ERATE=0.0005;THETA=0.0083;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145383170 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2316;AVGPOST=0.9903;RSQ=0.9804;ERATE=0.0004;THETA=0.0041;AC=503;AN=2184 GT:DS:GL:BD 0.23031135 0 1 145383176 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6237;ERATE=0.0004;THETA=0.0028;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145383199 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145383227 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.983;LDAF=0.1840;AVGPOST=0.9923;RSQ=0.9832;ERATE=0.0004;THETA=0.0010;AC=401;AN=2184 GT:DS:GL:BD 0.18360806 0 1 145383239 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.983;LDAF=0.1838;AVGPOST=0.9925;RSQ=0.9832;ERATE=0.0004;THETA=0.0036;AC=400;AN=2184 GT:DS:GL:BD 0.18315019 0 1 145383244 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6497;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145383283 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1337;AVGPOST=0.9878;RSQ=0.9605;ERATE=0.0004;THETA=0.0008;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 145383289 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5871;ERATE=0.0004;THETA=0.0051;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145383383 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.562;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.3890;ERATE=0.0007;THETA=0.0051;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145383423 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0050;AVGPOST=0.9987;RSQ=0.8757;ERATE=0.0004;THETA=0.0029;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145383468 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.579;LDAF=0.0020;AVGPOST=0.9969;RSQ=0.2886;ERATE=0.0009;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145383571 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.896;BRSQ=0.428;LDAF=0.8709;AVGPOST=0.8509;RSQ=0.4549;ERATE=0.0181;THETA=0.0028;AC=2016;AN=2184 GT:DS:GL:BD 0.92307693 1 1 145383636 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.604;LDAF=0.0053;AVGPOST=0.9944;RSQ=0.5821;ERATE=0.0008;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145383675 . G GCACTC 316 PASS INDEL;BAVGPOST=0.994;BRSQ=0.651;LDAF=0.0123;AVGPOST=0.9960;RSQ=0.8610;ERATE=0.0007;THETA=0.0012;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 145383748 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.387;LDAF=0.0096;AVGPOST=0.9862;RSQ=0.4289;ERATE=0.0015;THETA=0.0057;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145383757 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.691;LDAF=0.0100;AVGPOST=0.9947;RSQ=0.7842;ERATE=0.0006;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 145383801 . TCG T 56 PASS INDEL;BAVGPOST=0.997;BRSQ=0.660;LDAF=0.0074;AVGPOST=0.9916;RSQ=0.5389;ERATE=0.0018;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145383840 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.875;LDAF=0.0122;AVGPOST=0.9867;RSQ=0.5960;ERATE=0.0015;THETA=0.0026;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 145384130 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1838;AVGPOST=0.9975;RSQ=0.9941;ERATE=0.0004;THETA=0.0058;AC=402;AN=2184 GT:DS:GL:BD 0.18406594 0 1 145384256 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8565;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145384286 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.722;LDAF=0.0103;AVGPOST=0.9928;RSQ=0.7354;ERATE=0.0005;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 145384360 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7783;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145384434 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7400;ERATE=0.0004;THETA=0.0023;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145384443 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0046;AVGPOST=0.9998;RSQ=0.9813;ERATE=0.0003;THETA=0.0018;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145384592 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.968;LDAF=0.1609;AVGPOST=0.9883;RSQ=0.9674;ERATE=0.0010;THETA=0.0012;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 145384710 . AAGTT A 183 PASS INDEL;BAVGPOST=0.999;BRSQ=0.743;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7407;ERATE=0.0005;THETA=0.0031;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145384843 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.843;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4969;ERATE=0.0004;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145384861 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0032;AVGPOST=1.0000;RSQ=0.9932;ERATE=0.0003;THETA=0.0016;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145384871 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.758;LDAF=0.0045;AVGPOST=0.9981;RSQ=0.8256;ERATE=0.0004;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145384994 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.693;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4569;ERATE=0.0006;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145385074 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0255;AVGPOST=0.9954;RSQ=0.9381;ERATE=0.0004;THETA=0.0042;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 145385134 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.641;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.6723;ERATE=0.0006;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145385185 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1319;AVGPOST=0.9910;RSQ=0.9693;ERATE=0.0006;THETA=0.0005;AC=288;AN=2184 GT:DS:GL:BD 0.13186814 0 1 145385300 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.2662;AVGPOST=0.9853;RSQ=0.9712;ERATE=0.0005;THETA=0.0007;AC=580;AN=2184 GT:DS:GL:BD 0.26556778 0 1 145385312 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2280;AVGPOST=0.9868;RSQ=0.9731;ERATE=0.0004;THETA=0.0024;AC=503;AN=2184 GT:DS:GL:BD 0.23031135 0 1 145385315 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0077;AVGPOST=0.9969;RSQ=0.8385;ERATE=0.0004;THETA=0.0017;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145385316 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.632;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.3776;ERATE=0.0005;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145385358 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.588;LDAF=0.0027;AVGPOST=0.9975;RSQ=0.5725;ERATE=0.0007;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145385378 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0030;AVGPOST=0.9979;RSQ=0.7539;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145385411 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.758;LDAF=0.0031;AVGPOST=0.9989;RSQ=0.8363;ERATE=0.0006;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145385433 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0031;AVGPOST=0.9963;RSQ=0.5790;ERATE=0.0005;THETA=0.0031;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145385444 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.891;LDAF=0.0178;AVGPOST=0.9926;RSQ=0.8455;ERATE=0.0005;THETA=0.0006;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 145385495 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.917;BRSQ=0.782;LDAF=0.2169;AVGPOST=0.9401;RSQ=0.8822;ERATE=0.0011;THETA=0.0015;AC=492;AN=2184 GT:DS:GL:BD 0.22527473 0 1 145385524 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.917;BRSQ=0.551;LDAF=0.0888;AVGPOST=0.9345;RSQ=0.7128;ERATE=0.0013;THETA=0.0010;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 145385527 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.917;BRSQ=0.551;LDAF=0.0955;AVGPOST=0.9374;RSQ=0.7435;ERATE=0.0009;THETA=0.0009;AC=184;AN=2184 GT:DS:GL:BD 0.08424909 0 1 145385529 . GT G 1397 PASS INDEL;BAVGPOST=0.968;BRSQ=0.906;LDAF=0.1777;AVGPOST=0.9576;RSQ=0.9009;ERATE=0.0023;THETA=0.0009;AC=382;AN=2184 GT:DS:GL:BD 0.17490843 0 1 145385532 . TG T 13534 PASS INDEL;BAVGPOST=0.977;BRSQ=0.938;LDAF=0.1831;AVGPOST=0.9858;RSQ=0.9686;ERATE=0.0005;THETA=0.0004;AC=399;AN=2184 GT:DS:GL:BD 0.18269230 0 1 145385534 . GC G 2497 PASS INDEL;BAVGPOST=0.978;BRSQ=0.940;LDAF=0.1982;AVGPOST=0.9633;RSQ=0.9270;ERATE=0.0019;THETA=0.0005;AC=434;AN=2184 GT:DS:GL:BD 0.19871795 0 1 145385572 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.958;LDAF=0.9797;AVGPOST=0.9961;RSQ=0.9181;ERATE=0.0008;THETA=0.0014;AC=2142;AN=2184 GT:DS:GL:BD 0.98076922 1 1 145385579 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.668;LDAF=0.0429;AVGPOST=0.9664;RSQ=0.6889;ERATE=0.0010;THETA=0.0010;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 145385594 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145385634 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0030;AVGPOST=0.9986;RSQ=0.8004;ERATE=0.0004;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145385664 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5214;ERATE=0.0006;THETA=0.0063;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145385697 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9556;ERATE=0.0003;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145385758 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145385903 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9233;ERATE=0.0004;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145386044 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.713;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.6992;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145386236 . AG A 30 PASS INDEL;BAVGPOST=0.980;BRSQ=0.353;LDAF=0.0267;AVGPOST=0.9606;RSQ=0.4201;ERATE=0.0043;THETA=0.0009;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 145386333 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5852;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145386355 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.737;LDAF=0.0016;AVGPOST=0.9983;RSQ=0.5541;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145386391 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.973;LDAF=0.5858;AVGPOST=0.9809;RSQ=0.9681;ERATE=0.0021;THETA=0.0007;AC=1290;AN=2184 GT:DS:GL:BD 0.59065932 1 1 145386517 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.799;LDAF=0.0036;AVGPOST=0.9964;RSQ=0.6060;ERATE=0.0006;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145386531 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.640;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.5158;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145386796 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2326;AVGPOST=0.9952;RSQ=0.9900;ERATE=0.0006;THETA=0.0076;AC=505;AN=2184 GT:DS:GL:BD 0.23122710 0 1 145387092 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2316;AVGPOST=0.9968;RSQ=0.9934;ERATE=0.0004;THETA=0.0042;AC=504;AN=2184 GT:DS:GL:BD 0.23076923 0 1 145387098 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.4570;ERATE=0.0004;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145387183 . TG T 744 PASS INDEL;BAVGPOST=0.960;BRSQ=0.821;LDAF=0.1270;AVGPOST=0.9761;RSQ=0.9233;ERATE=0.0006;THETA=0.0003;AC=282;AN=2184 GT:DS:GL:BD 0.12912089 0 1 145387185 rs113147630 GT G 10566 PASS INDEL;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1303;AVGPOST=0.9920;RSQ=0.9745;ERATE=0.0005;THETA=0.0027;AC=286;AN=2184 GT:DS:GL:BD 0.13095239 0 1 145387254 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.619;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4714;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145387319 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0045;AVGPOST=0.9990;RSQ=0.9103;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145387340 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7546;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145387365 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0029;AVGPOST=0.9986;RSQ=0.7815;ERATE=0.0005;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145387531 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.530;LDAF=0.0086;AVGPOST=0.9891;RSQ=0.4815;ERATE=0.0013;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145387561 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.619;LDAF=0.0024;AVGPOST=0.9972;RSQ=0.5009;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145387580 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.862;LDAF=0.0243;AVGPOST=0.9951;RSQ=0.9182;ERATE=0.0007;THETA=0.0014;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 145387627 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.924;BRSQ=0.862;LDAF=0.5649;AVGPOST=0.9584;RSQ=0.9311;ERATE=0.0014;THETA=0.0003;AC=1258;AN=2184 GT:DS:GL:BD 0.57600731 1 1 145387643 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.943;BRSQ=0.547;LDAF=0.9424;AVGPOST=0.9347;RSQ=0.5293;ERATE=0.0057;THETA=0.0011;AC=2107;AN=2184 GT:DS:GL:BD 0.96474361 1 1 145387643 . AC A 9048 PASS INDEL;BAVGPOST=0.969;BRSQ=0.182;LDAF=0.9532;AVGPOST=0.9272;RSQ=0.3341;ERATE=0.0068;THETA=0.0010;AC=2144;AN=2184 GT:DS:GL:BD 0.98168498 1 1 145387867 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145387998 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8540;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145388092 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0049;AVGPOST=0.9980;RSQ=0.8321;ERATE=0.0005;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145388107 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7520;ERATE=0.0005;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145388137 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2554;AVGPOST=0.9971;RSQ=0.9934;ERATE=0.0005;THETA=0.0006;AC=557;AN=2184 GT:DS:GL:BD 0.25503662 0 1 145388336 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0067;AVGPOST=0.9992;RSQ=0.9570;ERATE=0.0003;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145388349 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0070;AVGPOST=0.9987;RSQ=0.9195;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145388552 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9007;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145388651 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5966;ERATE=0.0004;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145388774 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6248;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145388921 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9683;ERATE=0.0004;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145389073 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0080;AVGPOST=0.9974;RSQ=0.8919;ERATE=0.0004;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 145389160 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.796;LDAF=0.0045;AVGPOST=0.9974;RSQ=0.7656;ERATE=0.0006;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145389264 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.692;LDAF=0.0213;AVGPOST=0.9901;RSQ=0.8134;ERATE=0.0009;THETA=0.0002;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 145389373 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0052;AVGPOST=0.9968;RSQ=0.7434;ERATE=0.0007;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145389487 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.782;LDAF=0.0024;AVGPOST=0.9981;RSQ=0.6705;ERATE=0.0010;THETA=0.0044;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145389768 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.367;LDAF=0.0133;AVGPOST=0.9849;RSQ=0.5370;ERATE=0.0017;THETA=0.0009;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145389935 . G GT 4788 PASS INDEL;BAVGPOST=0.986;BRSQ=0.773;LDAF=0.0301;AVGPOST=0.9890;RSQ=0.8631;ERATE=0.0005;THETA=0.0043;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 145389965 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.764;LDAF=0.0471;AVGPOST=0.9831;RSQ=0.8690;ERATE=0.0004;THETA=0.0005;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 145390137 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9163;ERATE=0.0004;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145390170 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.747;LDAF=0.0037;AVGPOST=0.9972;RSQ=0.7056;ERATE=0.0004;THETA=0.0030;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145390188 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145390231 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.0245;AVGPOST=0.9993;RSQ=0.9867;ERATE=0.0004;THETA=0.0013;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 145390259 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.668;LDAF=0.0037;AVGPOST=0.9975;RSQ=0.7389;ERATE=0.0004;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145390305 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2544;AVGPOST=0.9954;RSQ=0.9896;ERATE=0.0005;THETA=0.0008;AC=554;AN=2184 GT:DS:GL:BD 0.25366300 0 1 145390354 . TA T 457 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0065;AVGPOST=0.9996;RSQ=0.9764;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145390410 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.918;LDAF=0.0344;AVGPOST=0.9929;RSQ=0.9227;ERATE=0.0004;THETA=0.0002;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 145390707 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0129;AVGPOST=0.9989;RSQ=0.9592;ERATE=0.0005;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 145391008 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5726;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145391011 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6649;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145391179 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.957;LDAF=0.5861;AVGPOST=0.9798;RSQ=0.9636;ERATE=0.0033;THETA=0.0010;AC=1290;AN=2184 GT:DS:GL:BD 0.59065932 1 1 145391250 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0029;AVGPOST=0.9967;RSQ=0.5265;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145391286 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.671;LDAF=0.0035;AVGPOST=0.9980;RSQ=0.7469;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145391428 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.727;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4628;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145391592 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0127;AVGPOST=0.9992;RSQ=0.9705;ERATE=0.0005;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 145391701 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.923;LDAF=0.0191;AVGPOST=0.9961;RSQ=0.9137;ERATE=0.0006;THETA=0.0014;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 145391792 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145391798 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6211;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145391874 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9500;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145391877 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.855;LDAF=0.0079;AVGPOST=0.9962;RSQ=0.8109;ERATE=0.0004;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 145392035 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145392243 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.776;LDAF=0.0054;AVGPOST=0.9958;RSQ=0.6912;ERATE=0.0004;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145392245 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.776;LDAF=0.0048;AVGPOST=0.9964;RSQ=0.6819;ERATE=0.0006;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145392253 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0219;AVGPOST=0.9978;RSQ=0.9583;ERATE=0.0004;THETA=0.0006;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 145392260 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0037;AVGPOST=0.9991;RSQ=0.8810;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145392550 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.931;BRSQ=0.882;LDAF=0.4590;AVGPOST=0.9072;RSQ=0.8697;ERATE=0.0509;THETA=0.0005;AC=1006;AN=2184 GT:DS:GL:BD 0.46062270 0 1 145392551 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.779;LDAF=0.0043;AVGPOST=0.9980;RSQ=0.7964;ERATE=0.0004;THETA=0.0014;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145392613 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.801;LDAF=0.0022;AVGPOST=0.9973;RSQ=0.5030;ERATE=0.0009;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145392617 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0024;AVGPOST=0.9967;RSQ=0.4367;ERATE=0.0009;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145392619 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.810;LDAF=0.0036;AVGPOST=0.9945;RSQ=0.4216;ERATE=0.0014;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145392772 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145392801 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5518;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145392898 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.746;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4637;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145393045 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9676;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145393151 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.562;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7050;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145393226 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.959;BRSQ=0.858;LDAF=0.1935;AVGPOST=0.9701;RSQ=0.9203;ERATE=0.0007;THETA=0.0009;AC=428;AN=2184 GT:DS:GL:BD 0.19597070 0 1 145393316 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.619;LDAF=0.0028;AVGPOST=0.9964;RSQ=0.5069;ERATE=0.0007;THETA=0.0028;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145393335 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1855;AVGPOST=0.9979;RSQ=0.9950;ERATE=0.0005;THETA=0.0003;AC=405;AN=2184 GT:DS:GL:BD 0.18543956 0 1 145393441 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1835;AVGPOST=0.9993;RSQ=0.9981;ERATE=0.0003;THETA=0.0003;AC=401;AN=2184 GT:DS:GL:BD 0.18360806 0 1 145393714 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.605;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7924;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145393739 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145393882 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9687;ERATE=0.0005;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145393902 . A AATT 63 PASS INDEL;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4989;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145393965 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0218;AVGPOST=0.9981;RSQ=0.9708;ERATE=0.0004;THETA=0.0003;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 145394025 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145394152 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.1460;AVGPOST=0.9980;RSQ=0.9925;ERATE=0.0004;THETA=0.0009;AC=319;AN=2184 GT:DS:GL:BD 0.14606227 0 1 145394190 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.970;LDAF=0.0204;AVGPOST=0.9963;RSQ=0.9376;ERATE=0.0004;THETA=0.0005;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 145394485 . CCAGCAAAAGCAA C 776 PASS INDEL;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.7013;ERATE=0.0005;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145394615 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145394621 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.621;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5857;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145394935 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9273;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145394955 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3448;AVGPOST=0.9956;RSQ=0.9918;ERATE=0.0007;THETA=0.0006;AC=753;AN=2184 GT:DS:GL:BD 0.34478021 0 1 145394988 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.735;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.8865;ERATE=0.0004;THETA=0.0022;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145395103 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1830;AVGPOST=0.9984;RSQ=0.9960;ERATE=0.0003;THETA=0.0007;AC=401;AN=2184 GT:DS:GL:BD 0.18360806 0 1 145395106 . C CT 175 PASS INDEL;BAVGPOST=0.984;BRSQ=0.531;LDAF=0.0309;AVGPOST=0.9590;RSQ=0.4350;ERATE=0.0105;THETA=0.0007;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 145395332 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.808;LDAF=0.0086;AVGPOST=0.9956;RSQ=0.7830;ERATE=0.0007;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 145395364 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0083;AVGPOST=0.9986;RSQ=0.9207;ERATE=0.0004;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145395375 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.721;LDAF=0.0104;AVGPOST=0.9946;RSQ=0.7621;ERATE=0.0006;THETA=0.0013;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 145395418 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.880;LDAF=0.0038;AVGPOST=0.9976;RSQ=0.7511;ERATE=0.0006;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145395440 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1460;AVGPOST=0.9973;RSQ=0.9905;ERATE=0.0006;THETA=0.0007;AC=319;AN=2184 GT:DS:GL:BD 0.14606227 0 1 145395453 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145395499 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8465;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145395516 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6317;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145395546 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.7766;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145395562 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0022;AVGPOST=0.9975;RSQ=0.5376;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145395573 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0028;AVGPOST=0.9980;RSQ=0.7674;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145395599 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.737;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6037;ERATE=0.0004;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145395604 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1846;AVGPOST=0.9992;RSQ=0.9978;ERATE=0.0007;THETA=0.0008;AC=404;AN=2184 GT:DS:GL:BD 0.18498169 0 1 145395607 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.961;LDAF=0.0324;AVGPOST=0.9961;RSQ=0.9530;ERATE=0.0005;THETA=0.0003;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 145395610 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145395618 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7680;AVGPOST=0.9972;RSQ=0.9935;ERATE=0.0006;THETA=0.0005;AC=1680;AN=2184 GT:DS:GL:BD 0.76923078 1 1 145395631 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9701;ERATE=0.0004;THETA=0.0039;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145395697 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0018;AVGPOST=0.9995;RSQ=0.8901;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145395771 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6274;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145395896 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145395990 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5686;ERATE=0.0003;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145396135 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1850;AVGPOST=0.9979;RSQ=0.9951;ERATE=0.0005;THETA=0.0002;AC=404;AN=2184 GT:DS:GL:BD 0.18498169 0 1 145396313 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.983;LDAF=0.1841;AVGPOST=0.9958;RSQ=0.9890;ERATE=0.0012;THETA=0.0004;AC=402;AN=2184 GT:DS:GL:BD 0.18406594 0 1 145396330 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.964;LDAF=0.1807;AVGPOST=0.9909;RSQ=0.9776;ERATE=0.0014;THETA=0.0005;AC=395;AN=2184 GT:DS:GL:BD 0.18086080 0 1 145396435 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.572;LDAF=0.0129;AVGPOST=0.9903;RSQ=0.7098;ERATE=0.0008;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 145396581 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.954;BRSQ=0.493;LDAF=0.0466;AVGPOST=0.9481;RSQ=0.5821;ERATE=0.0021;THETA=0.0006;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 145396684 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7543;ERATE=0.0003;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145396696 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.708;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5142;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145396853 . AC A 3190 PASS INDEL;BAVGPOST=0.960;BRSQ=0.886;LDAF=0.1840;AVGPOST=0.9458;RSQ=0.8677;ERATE=0.0064;THETA=0.0003;AC=396;AN=2184 GT:DS:GL:BD 0.18131869 0 1 145396859 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0246;AVGPOST=0.9987;RSQ=0.9775;ERATE=0.0004;THETA=0.0025;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 145396977 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.666;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7199;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145396978 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6010;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145396979 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.832;LDAF=0.0060;AVGPOST=0.9970;RSQ=0.7753;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145396981 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.7099;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145396994 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.861;LDAF=0.0074;AVGPOST=0.9982;RSQ=0.9029;ERATE=0.0004;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 145397047 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.7252;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145397121 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8358;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145397168 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0131;AVGPOST=0.9985;RSQ=0.9510;ERATE=0.0004;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 145397394 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0025;AVGPOST=0.9993;RSQ=0.8675;ERATE=0.0006;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145397432 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.880;LDAF=0.0028;AVGPOST=0.9993;RSQ=0.9003;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145397508 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0228;AVGPOST=0.9995;RSQ=0.9925;ERATE=0.0004;THETA=0.0006;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 145397547 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145397557 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0170;AVGPOST=0.9995;RSQ=0.9872;ERATE=0.0004;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 145397757 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8374;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145397778 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.6473;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145397829 . AC A 3143 PASS INDEL;BAVGPOST=0.996;BRSQ=0.944;LDAF=0.0275;AVGPOST=0.9941;RSQ=0.9141;ERATE=0.0004;THETA=0.0004;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 145397836 . CT C 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6464;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145397867 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0015;AVGPOST=0.9992;RSQ=0.7660;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145397868 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6404;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145397880 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.849;LDAF=0.0089;AVGPOST=0.9968;RSQ=0.8447;ERATE=0.0006;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 145397916 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.897;LDAF=0.0175;AVGPOST=0.9949;RSQ=0.8972;ERATE=0.0003;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 145397928 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7144;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145397937 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0074;AVGPOST=0.9997;RSQ=0.9817;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 145397942 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4082;AVGPOST=0.9977;RSQ=0.9960;ERATE=0.0004;THETA=0.0006;AC=890;AN=2184 GT:DS:GL:BD 0.40750915 0 1 145397946 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8163;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145397947 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.7444;AVGPOST=0.9983;RSQ=0.9963;ERATE=0.0004;THETA=0.0007;AC=1626;AN=2184 GT:DS:GL:BD 0.74450547 1 1 145397948 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0028;AVGPOST=0.9992;RSQ=0.8694;ERATE=0.0006;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145397950 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145397952 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0067;AVGPOST=0.9989;RSQ=0.9373;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145397953 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0004;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145398028 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8688;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145398042 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1847;AVGPOST=0.9993;RSQ=0.9981;ERATE=0.0004;THETA=0.0006;AC=404;AN=2184 GT:DS:GL:BD 0.18498169 0 1 145398185 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145398686 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6918;ERATE=0.0004;THETA=0.0028;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145398745 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4098;AVGPOST=0.9976;RSQ=0.9958;ERATE=0.0006;THETA=0.0006;AC=894;AN=2184 GT:DS:GL:BD 0.40934065 0 1 145398776 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.660;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145398958 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.535;LDAF=0.0048;AVGPOST=0.9941;RSQ=0.5009;ERATE=0.0010;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145399033 . AG A 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4226;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145399157 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6002;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145399215 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0023;AVGPOST=0.9973;RSQ=0.4972;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145399219 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0038;AVGPOST=0.9992;RSQ=0.9259;ERATE=0.0003;THETA=0.0012;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145399222 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145399225 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.6056;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145399229 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4092;AVGPOST=0.9953;RSQ=0.9915;ERATE=0.0011;THETA=0.0005;AC=892;AN=2184 GT:DS:GL:BD 0.40842491 0 1 145399231 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0025;AVGPOST=0.9993;RSQ=0.8741;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145399243 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4619;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145399251 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.527;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.4317;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145399265 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.518;LDAF=0.0049;AVGPOST=0.9922;RSQ=0.3692;ERATE=0.0014;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145399296 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.713;LDAF=0.0247;AVGPOST=0.9888;RSQ=0.8137;ERATE=0.0006;THETA=0.0002;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 145399309 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.599;LDAF=0.0024;AVGPOST=0.9973;RSQ=0.5324;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145399312 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.720;LDAF=0.0023;AVGPOST=0.9969;RSQ=0.4186;ERATE=0.0008;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145399315 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0043;AVGPOST=0.9977;RSQ=0.7899;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145399365 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145399472 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.917;LDAF=0.0052;AVGPOST=0.9980;RSQ=0.8578;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145399645 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6469;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145399696 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6583;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145399725 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145399857 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.726;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5584;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145400067 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0041;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145400124 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7401;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145400176 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7651;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145400504 . A AT 279 PASS INDEL;BAVGPOST=0.972;BRSQ=0.518;LDAF=0.0433;AVGPOST=0.9472;RSQ=0.4837;ERATE=0.0028;THETA=0.0003;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 145400802 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.834;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9594;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145400874 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0220;AVGPOST=0.9982;RSQ=0.9679;ERATE=0.0004;THETA=0.0030;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 145401045 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8625;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145401138 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7444;AVGPOST=0.9979;RSQ=0.9952;ERATE=0.0006;THETA=0.0004;AC=1627;AN=2184 GT:DS:GL:BD 0.74496335 1 1 145401183 . A AG 1441 PASS INDEL;BAVGPOST=0.998;BRSQ=0.942;LDAF=0.0184;AVGPOST=0.9988;RSQ=0.9746;ERATE=0.0005;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 145401203 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0180;AVGPOST=0.9996;RSQ=0.9905;ERATE=0.0003;THETA=0.0006;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 145401222 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8005;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145401339 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.666;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3967;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145401401 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8335;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145401421 . A AG 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4258;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145401597 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9233;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145401634 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4947;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145401654 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0223;AVGPOST=0.9982;RSQ=0.9734;ERATE=0.0004;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 145401845 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0015;AVGPOST=0.9992;RSQ=0.7506;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145401883 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0021;AVGPOST=0.9990;RSQ=0.7895;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145401928 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7441;AVGPOST=0.9980;RSQ=0.9958;ERATE=0.0006;THETA=0.0007;AC=1627;AN=2184 GT:DS:GL:BD 0.74496335 1 1 145401969 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0044;AVGPOST=0.9985;RSQ=0.8743;ERATE=0.0005;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145402014 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3621;AVGPOST=0.9968;RSQ=0.9944;ERATE=0.0007;THETA=0.0003;AC=790;AN=2184 GT:DS:GL:BD 0.36172161 0 1 145402055 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145402090 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145402274 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0179;AVGPOST=0.9999;RSQ=0.9975;ERATE=0.0003;THETA=0.0009;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 145402354 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7442;AVGPOST=0.9980;RSQ=0.9957;ERATE=0.0005;THETA=0.0006;AC=1627;AN=2184 GT:DS:GL:BD 0.74496335 1 1 145402443 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0039;AVGPOST=0.9964;RSQ=0.6163;ERATE=0.0007;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145402532 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0049;AVGPOST=0.9993;RSQ=0.9314;ERATE=0.0005;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145402839 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6252;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145403289 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.816;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7998;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145403291 . AC A 183 PASS INDEL;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5519;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145403303 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145403326 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145403450 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.6144;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145403513 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145403555 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.738;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145403610 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0004;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145403656 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7558;AVGPOST=0.9961;RSQ=0.9915;ERATE=0.0007;THETA=0.0010;AC=1654;AN=2184 GT:DS:GL:BD 0.75732601 1 1 145403963 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.741;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.5363;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145404354 . ACTC A 121 PASS INDEL;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5464;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145404469 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1852;AVGPOST=0.9978;RSQ=0.9941;ERATE=0.0006;THETA=0.0006;AC=404;AN=2184 GT:DS:GL:BD 0.18498169 0 1 145404692 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0179;AVGPOST=0.9998;RSQ=0.9950;ERATE=0.0003;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 145405165 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7858;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145405175 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0048;AVGPOST=0.9976;RSQ=0.7959;ERATE=0.0006;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145405230 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.805;LDAF=0.0053;AVGPOST=0.9963;RSQ=0.6959;ERATE=0.0007;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145405309 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0075;AVGPOST=0.9991;RSQ=0.9504;ERATE=0.0005;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 145405332 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0064;AVGPOST=0.9995;RSQ=0.9675;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145405368 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.948;LDAF=0.0274;AVGPOST=0.9948;RSQ=0.9248;ERATE=0.0006;THETA=0.0004;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 145405424 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0234;AVGPOST=0.9938;RSQ=0.9008;ERATE=0.0007;THETA=0.0005;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 145405464 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0023;AVGPOST=0.9994;RSQ=0.8825;ERATE=0.0004;THETA=0.0050;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145405480 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0034;AVGPOST=0.9985;RSQ=0.7973;ERATE=0.0008;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145405565 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0125;AVGPOST=0.9997;RSQ=0.9895;ERATE=0.0004;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 145405732 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6767;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145405844 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0179;AVGPOST=0.9998;RSQ=0.9939;ERATE=0.0004;THETA=0.0003;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 145405914 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145405953 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7303;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145406013 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.874;LDAF=0.0158;AVGPOST=0.9950;RSQ=0.8846;ERATE=0.0006;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 145406042 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.734;LDAF=0.0423;AVGPOST=0.9711;RSQ=0.7322;ERATE=0.0093;THETA=0.0003;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 145406394 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5515;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145406460 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.984;LDAF=0.0951;AVGPOST=0.9944;RSQ=0.9742;ERATE=0.0004;THETA=0.0007;AC=206;AN=2184 GT:DS:GL:BD 0.09432235 0 1 145406478 . C CT 2468 PASS INDEL;BAVGPOST=0.763;BRSQ=0.511;LDAF=0.3745;AVGPOST=0.6929;RSQ=0.4401;ERATE=0.0452;THETA=0.0005;AC=614;AN=2184 GT:DS:GL:BD 0.28113553 0 1 145406523 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.604;LDAF=0.0020;AVGPOST=0.9969;RSQ=0.3220;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145406557 rs59827775 CA C 507 PASS INDEL;BAVGPOST=0.994;BRSQ=0.847;LDAF=0.0223;AVGPOST=0.9973;RSQ=0.9458;ERATE=0.0007;THETA=0.0005;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 145406685 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.2974;ERATE=0.0008;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145406746 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.748;LDAF=0.0248;AVGPOST=0.9906;RSQ=0.8447;ERATE=0.0005;THETA=0.0006;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 145406833 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.6239;ERATE=0.0004;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145406888 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.892;LDAF=0.0940;AVGPOST=0.9892;RSQ=0.9561;ERATE=0.0005;THETA=0.0005;AC=205;AN=2184 GT:DS:GL:BD 0.09386447 0 1 145407000 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.706;LDAF=0.0014;AVGPOST=0.9979;RSQ=0.3561;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145407108 . CTAT C 15 PASS INDEL;BAVGPOST=0.995;BRSQ=0.601;LDAF=0.0146;AVGPOST=0.9823;RSQ=0.5162;ERATE=0.0038;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 145407159 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.668;LDAF=0.0148;AVGPOST=0.9869;RSQ=0.6360;ERATE=0.0012;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 145407166 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0072;AVGPOST=0.9982;RSQ=0.8999;ERATE=0.0006;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145407332 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.692;LDAF=0.0059;AVGPOST=0.9969;RSQ=0.7963;ERATE=0.0006;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145407365 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.889;LDAF=0.0241;AVGPOST=0.9986;RSQ=0.9773;ERATE=0.0004;THETA=0.0006;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 145407402 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.979;LDAF=0.1287;AVGPOST=0.9982;RSQ=0.9943;ERATE=0.0004;THETA=0.0010;AC=281;AN=2184 GT:DS:GL:BD 0.12866300 0 1 145407712 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.972;LDAF=0.7418;AVGPOST=0.9656;RSQ=0.9315;ERATE=0.0032;THETA=0.0004;AC=1635;AN=2184 GT:DS:GL:BD 0.74862635 1 1 145407718 . C CA 563 PASS INDEL;BAVGPOST=0.965;BRSQ=0.521;LDAF=0.0691;AVGPOST=0.9181;RSQ=0.4947;ERATE=0.0125;THETA=0.0005;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 145407904 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.954;BRSQ=0.910;LDAF=0.7605;AVGPOST=0.9718;RSQ=0.9427;ERATE=0.0011;THETA=0.0006;AC=1679;AN=2184 GT:DS:GL:BD 0.76877290 1 1 145408111 . A AGAAG 510 PASS INDEL;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0042;AVGPOST=0.9973;RSQ=0.7413;ERATE=0.0007;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145408186 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0049;AVGPOST=0.9979;RSQ=0.8234;ERATE=0.0006;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145408196 . AAAAG A 126 PASS INDEL;BAVGPOST=1.000;BRSQ=0.742;LDAF=0.0019;AVGPOST=0.9972;RSQ=0.4219;ERATE=0.0005;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145408264 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0229;AVGPOST=0.9995;RSQ=0.9909;ERATE=0.0003;THETA=0.0005;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 145408624 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.587;LDAF=0.0026;AVGPOST=0.9981;RSQ=0.6626;ERATE=0.0005;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145408826 . C CA 259 PASS INDEL;BAVGPOST=0.974;BRSQ=0.544;LDAF=0.0382;AVGPOST=0.9587;RSQ=0.5460;ERATE=0.0130;THETA=0.0006;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 145408869 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1303;AVGPOST=0.9984;RSQ=0.9943;ERATE=0.0004;THETA=0.0003;AC=285;AN=2184 GT:DS:GL:BD 0.13049451 0 1 145409010 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.5889;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145409136 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.838;LDAF=0.0109;AVGPOST=0.9970;RSQ=0.8962;ERATE=0.0004;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 145409232 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8519;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145409347 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145409524 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.647;LDAF=0.0029;AVGPOST=0.9970;RSQ=0.6000;ERATE=0.0005;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145409527 . TTGTG T 1868 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0203;AVGPOST=0.9973;RSQ=0.9501;ERATE=0.0005;THETA=0.0006;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 145409570 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.864;LDAF=0.0056;AVGPOST=0.9989;RSQ=0.9116;ERATE=0.0007;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145409629 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.627;LDAF=0.0171;AVGPOST=0.9873;RSQ=0.6881;ERATE=0.0005;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 145409630 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.680;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6139;ERATE=0.0008;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145409741 . C CT 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6122;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145409855 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.960;LDAF=0.0324;AVGPOST=0.9961;RSQ=0.9528;ERATE=0.0004;THETA=0.0004;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 145409871 . A AT 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145410186 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0041;AVGPOST=0.9980;RSQ=0.8204;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145410458 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.8986;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145410635 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0034;AVGPOST=0.9988;RSQ=0.8634;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145410855 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.5485;ERATE=0.0007;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145411129 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0052;AVGPOST=0.9996;RSQ=0.9624;ERATE=0.0004;THETA=0.0013;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145411254 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0064;AVGPOST=0.9978;RSQ=0.8455;ERATE=0.0007;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145411294 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0179;AVGPOST=0.9997;RSQ=0.9925;ERATE=0.0003;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 145411311 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5389;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145411401 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0120;AVGPOST=0.9996;RSQ=0.9880;ERATE=0.0004;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 145411443 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145411572 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.992;LDAF=0.3477;AVGPOST=0.9929;RSQ=0.9885;ERATE=0.0007;THETA=0.0005;AC=757;AN=2184 GT:DS:GL:BD 0.34661171 0 1 145411715 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1443;AVGPOST=0.9975;RSQ=0.9915;ERATE=0.0004;THETA=0.0004;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 145411719 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9294;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145411842 . CTAGA C 327 PASS INDEL;BAVGPOST=0.998;BRSQ=0.713;LDAF=0.0045;AVGPOST=0.9973;RSQ=0.7671;ERATE=0.0004;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145411869 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6029;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145411935 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5938;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145412094 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.959;LDAF=0.1913;AVGPOST=0.9809;RSQ=0.9583;ERATE=0.0013;THETA=0.0008;AC=407;AN=2184 GT:DS:GL:BD 0.18635531 0 1 145412096 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.633;LDAF=0.0049;AVGPOST=0.9957;RSQ=0.6304;ERATE=0.0007;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145412216 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0029;AVGPOST=0.9979;RSQ=0.7293;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145412217 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7297;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145412412 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.931;BRSQ=0.865;LDAF=0.7335;AVGPOST=0.9128;RSQ=0.8385;ERATE=0.0108;THETA=0.0004;AC=1659;AN=2184 GT:DS:GL:BD 0.75961536 1 1 145412439 . G GT 101 PASS INDEL;BAVGPOST=0.991;BRSQ=0.368;LDAF=0.0171;AVGPOST=0.9808;RSQ=0.5486;ERATE=0.0024;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145412485 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4452;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145412767 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.742;LDAF=0.0036;AVGPOST=0.9973;RSQ=0.7317;ERATE=0.0007;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145412913 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145413153 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5571;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145413273 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5273;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145413314 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.775;LDAF=0.0059;AVGPOST=0.9940;RSQ=0.6411;ERATE=0.0007;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145413381 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9349;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145413421 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.809;LDAF=0.0020;AVGPOST=0.9994;RSQ=0.8517;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145413519 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=1.0000;RSQ=0.9932;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145413711 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.6087;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145413715 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9874;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145413947 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6730;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145413948 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.772;LDAF=0.0019;AVGPOST=0.9993;RSQ=0.8335;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145414086 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145414309 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9474;ERATE=0.0003;THETA=0.0021;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145414458 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0124;AVGPOST=0.9998;RSQ=0.9928;ERATE=0.0003;THETA=0.0008;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 145414463 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145414642 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0183;AVGPOST=0.9999;RSQ=0.9979;ERATE=0.0004;THETA=0.0006;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 145414756 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145414759 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145414790 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0041;AVGPOST=1.0000;RSQ=0.9947;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145415039 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145415112 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145415273 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0078;AVGPOST=0.9999;RSQ=0.9944;ERATE=0.0004;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145415368 . C CGAG 146 PASS INDEL;BAVGPOST=0.998;BRSQ=0.453;LDAF=0.0048;AVGPOST=0.9927;RSQ=0.3551;ERATE=0.0008;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145415390 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145415505 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145415534 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8091;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145415552 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6374;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145415613 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.8028;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145415669 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145415691 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145415738 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145415886 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7748;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145416056 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1832;AVGPOST=0.9998;RSQ=0.9994;ERATE=0.0003;THETA=0.0008;AC=401;AN=2184 GT:DS:GL:BD 0.18360806 0 1 145416081 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145416096 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0013;AVGPOST=0.9997;RSQ=0.9006;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145416149 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145416162 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145416199 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145416337 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145416391 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145416411 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145416447 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0046;AVGPOST=1.0000;RSQ=0.9952;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145416475 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145416483 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145416540 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145416559 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145416584 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0224;AVGPOST=1.0000;RSQ=0.9990;ERATE=0.0003;THETA=0.0005;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 145416878 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145416907 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145416975 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145417071 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8795;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145417315 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145417519 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6055;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145417592 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0179;AVGPOST=0.9996;RSQ=0.9888;ERATE=0.0004;THETA=0.0005;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 145417614 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0035;AVGPOST=0.9987;RSQ=0.8391;ERATE=0.0007;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145417627 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5663;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145417662 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1864;AVGPOST=0.9974;RSQ=0.9944;ERATE=0.0006;THETA=0.0007;AC=406;AN=2184 GT:DS:GL:BD 0.18589744 0 1 145417953 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145418050 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.7568;AVGPOST=0.9970;RSQ=0.9931;ERATE=0.0005;THETA=0.0005;AC=1653;AN=2184 GT:DS:GL:BD 0.75686812 1 1 145418176 . C CT 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145418496 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6228;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145418802 . G GA 27 PASS INDEL;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0019;AVGPOST=0.9975;RSQ=0.4249;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145418825 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6176;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145418832 . TA T 112 PASS INDEL;BAVGPOST=0.999;BRSQ=0.729;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.5310;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145419568 . G GCGCAATCT 3893 PASS INDEL;BAVGPOST=0.911;BRSQ=0.334;LDAF=0.0936;AVGPOST=0.9085;RSQ=0.5933;ERATE=0.0065;THETA=0.0006;AC=163;AN=2184 GT:DS:GL:BD 0.07463370 0 1 145419808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.725;LDAF=0.0170;AVGPOST=0.9924;RSQ=0.8092;ERATE=0.0007;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 145420119 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0048;AVGPOST=0.9996;RSQ=0.9631;ERATE=0.0005;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145420151 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6008;ERATE=0.0004;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145420212 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.4962;ERATE=0.0006;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145420295 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0031;AVGPOST=0.9997;RSQ=0.9652;ERATE=0.0004;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145420318 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8061;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145420392 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9373;ERATE=0.0004;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145420397 rs113868442 TAAATA T 490 PASS INDEL;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0046;AVGPOST=0.9994;RSQ=0.9385;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145420464 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145420483 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0127;AVGPOST=0.9992;RSQ=0.9734;ERATE=0.0003;THETA=0.0017;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 145420495 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.650;LDAF=0.0047;AVGPOST=0.9959;RSQ=0.6297;ERATE=0.0008;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145420496 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0050;AVGPOST=0.9982;RSQ=0.8632;ERATE=0.0003;THETA=0.0044;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145420676 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.985;LDAF=0.0940;AVGPOST=0.9965;RSQ=0.9826;ERATE=0.0005;THETA=0.0006;AC=205;AN=2184 GT:DS:GL:BD 0.09386447 0 1 145420735 . CACA C 113 PASS INDEL;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6072;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145421104 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0130;AVGPOST=0.9997;RSQ=0.9881;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 145421157 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7457;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145421161 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7304;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145421267 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145421395 . GAT G 416 PASS INDEL;BAVGPOST=0.977;BRSQ=0.638;LDAF=0.0574;AVGPOST=0.9425;RSQ=0.5592;ERATE=0.0191;THETA=0.0010;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 145421477 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5341;AVGPOST=0.9963;RSQ=0.9937;ERATE=0.0004;THETA=0.0004;AC=1168;AN=2184 GT:DS:GL:BD 0.53479856 1 1 145421622 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0126;AVGPOST=0.9994;RSQ=0.9775;ERATE=0.0003;THETA=0.0002;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 145421890 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7467;ERATE=0.0006;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145421891 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6153;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145422174 . G GGGAAA 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.750;LDAF=0.0029;AVGPOST=0.9952;RSQ=0.3279;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145422190 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0148;AVGPOST=0.9996;RSQ=0.9879;ERATE=0.0004;THETA=0.0041;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 145422211 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5330;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145422252 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.825;LDAF=0.0101;AVGPOST=0.9965;RSQ=0.8648;ERATE=0.0004;THETA=0.0011;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145422285 . T TTC 875 PASS INDEL;BAVGPOST=0.956;BRSQ=0.517;LDAF=0.0618;AVGPOST=0.9399;RSQ=0.5935;ERATE=0.0050;THETA=0.0007;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 145422319 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0048;AVGPOST=0.9996;RSQ=0.9587;ERATE=0.0004;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145422374 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.551;LDAF=0.0031;AVGPOST=0.9951;RSQ=0.3548;ERATE=0.0009;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145422648 . C CT 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7920;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145422661 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6447;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145422670 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.691;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5610;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145422696 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.787;LDAF=0.0074;AVGPOST=0.9968;RSQ=0.8360;ERATE=0.0007;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 145422799 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.788;LDAF=0.0047;AVGPOST=0.9963;RSQ=0.6452;ERATE=0.0010;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145422866 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8177;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145422955 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9286;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145422990 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.781;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.7382;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145423089 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6428;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145423254 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5741;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145423326 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1859;AVGPOST=0.9973;RSQ=0.9936;ERATE=0.0005;THETA=0.0009;AC=407;AN=2184 GT:DS:GL:BD 0.18635531 0 1 145423582 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0045;AVGPOST=0.9989;RSQ=0.9045;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145423661 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5624;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145423686 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.987;LDAF=0.1873;AVGPOST=0.9963;RSQ=0.9914;ERATE=0.0007;THETA=0.0007;AC=412;AN=2184 GT:DS:GL:BD 0.18864469 0 1 145423730 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0031;AVGPOST=0.9982;RSQ=0.7211;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145423928 . AT A 23 PASS INDEL;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4365;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145423953 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0044;AVGPOST=0.9986;RSQ=0.8744;ERATE=0.0004;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145423982 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.5471;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145424264 . A AC 712 PASS INDEL;BAVGPOST=0.944;BRSQ=0.786;LDAF=0.1327;AVGPOST=0.9487;RSQ=0.8482;ERATE=0.0010;THETA=0.0008;AC=302;AN=2184 GT:DS:GL:BD 0.13827839 0 1 145424267 rs11439138 C CA 15331 PASS INDEL;BAVGPOST=0.992;BRSQ=0.976;LDAF=0.1877;AVGPOST=0.9967;RSQ=0.9922;ERATE=0.0005;THETA=0.0004;AC=411;AN=2184 GT:DS:GL:BD 0.18818681 0 1 145424269 . A AT 700 PASS INDEL;BAVGPOST=0.943;BRSQ=0.785;LDAF=0.1269;AVGPOST=0.9493;RSQ=0.8451;ERATE=0.0009;THETA=0.0005;AC=284;AN=2184 GT:DS:GL:BD 0.13003664 0 1 145424393 . CA C 6527 PASS INDEL;BAVGPOST=0.905;BRSQ=0.827;LDAF=0.4542;AVGPOST=0.8849;RSQ=0.8309;ERATE=0.0166;THETA=0.0018;AC=1028;AN=2184 GT:DS:GL:BD 0.47069597 0 1 145424397 rs60323852 AC A 42271 PASS INDEL;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.5265;AVGPOST=0.9867;RSQ=0.9790;ERATE=0.0015;THETA=0.0006;AC=1152;AN=2184 GT:DS:GL:BD 0.52747256 1 1 145424430 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0137;AVGPOST=0.9979;RSQ=0.9342;ERATE=0.0004;THETA=0.0002;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 145424687 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0032;AVGPOST=0.9992;RSQ=0.8947;ERATE=0.0005;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145424695 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9826;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145424747 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.8152;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145424769 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6404;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145425099 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.515;LDAF=0.0042;AVGPOST=0.9947;RSQ=0.4731;ERATE=0.0008;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145425102 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.612;LDAF=0.0039;AVGPOST=0.9958;RSQ=0.5610;ERATE=0.0008;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145425183 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.607;LDAF=0.0060;AVGPOST=0.9948;RSQ=0.6334;ERATE=0.0007;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145425249 rs66820571 A AT 31685 PASS INDEL;BAVGPOST=0.981;BRSQ=0.963;LDAF=0.5220;AVGPOST=0.9783;RSQ=0.9671;ERATE=0.0039;THETA=0.0009;AC=1150;AN=2184 GT:DS:GL:BD 0.52655679 1 1 145425428 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6661;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145425488 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9804;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145425793 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.538;LDAF=0.0020;AVGPOST=0.9973;RSQ=0.4478;ERATE=0.0007;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145425845 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6522;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145426008 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0057;AVGPOST=0.9959;RSQ=0.7034;ERATE=0.0007;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145426157 . GGAGAT G 232 PASS INDEL;BAVGPOST=1.000;BRSQ=0.731;LDAF=0.0021;AVGPOST=0.9966;RSQ=0.3975;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145426261 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.973;LDAF=0.1225;AVGPOST=0.9873;RSQ=0.9547;ERATE=0.0008;THETA=0.0008;AC=270;AN=2184 GT:DS:GL:BD 0.12362637 0 1 145426332 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.648;LDAF=0.0127;AVGPOST=0.9888;RSQ=0.6784;ERATE=0.0008;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 145426341 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.7362;AVGPOST=0.9935;RSQ=0.9853;ERATE=0.0008;THETA=0.0006;AC=1611;AN=2184 GT:DS:GL:BD 0.73763734 1 1 145426360 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.560;LDAF=0.0095;AVGPOST=0.9902;RSQ=0.5664;ERATE=0.0007;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 145426399 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.468;LDAF=0.0047;AVGPOST=0.9919;RSQ=0.3110;ERATE=0.0011;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145426438 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.485;LDAF=0.0028;AVGPOST=0.9981;RSQ=0.6967;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145426448 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.721;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4116;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145426502 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7222;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145426521 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.7694;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145426797 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.586;LDAF=0.0039;AVGPOST=0.9946;RSQ=0.4528;ERATE=0.0006;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145426935 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.636;LDAF=0.0027;AVGPOST=0.9964;RSQ=0.4588;ERATE=0.0009;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145426958 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6057;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145427047 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.605;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5189;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145427068 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0054;AVGPOST=0.9990;RSQ=0.9307;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145427227 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0023;AVGPOST=0.9977;RSQ=0.5804;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145427432 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0053;AVGPOST=0.9989;RSQ=0.9123;ERATE=0.0005;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145427496 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.823;LDAF=0.0036;AVGPOST=0.9973;RSQ=0.6994;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145427574 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0250;AVGPOST=0.9994;RSQ=0.9907;ERATE=0.0004;THETA=0.0003;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 145427921 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0080;AVGPOST=0.9989;RSQ=0.9396;ERATE=0.0004;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145427942 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.637;LDAF=0.0036;AVGPOST=0.9986;RSQ=0.8521;ERATE=0.0004;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145427960 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.956;BRSQ=0.846;LDAF=0.1679;AVGPOST=0.9518;RSQ=0.8759;ERATE=0.0066;THETA=0.0011;AC=359;AN=2184 GT:DS:GL:BD 0.16437729 0 1 145427990 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.887;BRSQ=0.367;LDAF=0.1345;AVGPOST=0.8443;RSQ=0.4656;ERATE=0.0177;THETA=0.0004;AC=175;AN=2184 GT:DS:GL:BD 0.08012821 0 1 145427990 . GTGTGTGTA G 2719 PASS INDEL;BAVGPOST=0.595;BRSQ=0.310;LDAF=0.3584;AVGPOST=0.6924;RSQ=0.4424;ERATE=0.0322;THETA=0.0014;AC=654;AN=2184 GT:DS:GL:BD 0.29945055 0 1 145427996 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.632;BRSQ=0.295;LDAF=0.4178;AVGPOST=0.7030;RSQ=0.4562;ERATE=0.0502;THETA=0.0008;AC=837;AN=2184 GT:DS:GL:BD 0.38324177 0 1 145428010 rs10694532 A ATTTT 1417 PASS INDEL;BAVGPOST=0.538;BRSQ=0.120;LDAF=0.6069;AVGPOST=0.6480;RSQ=0.3800;ERATE=0.0254;THETA=0.0006;AC=1390;AN=2184 GT:DS:GL:BD 0.63644689 1 1 145428066 . A AG 54 PASS INDEL;BAVGPOST=0.999;BRSQ=0.666;LDAF=0.0040;AVGPOST=0.9961;RSQ=0.6032;ERATE=0.0006;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145428132 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0094;AVGPOST=0.9967;RSQ=0.8419;ERATE=0.0006;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145428274 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.716;LDAF=0.0040;AVGPOST=0.9978;RSQ=0.7764;ERATE=0.0006;THETA=0.0027;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145428296 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.7503;AVGPOST=0.9934;RSQ=0.9866;ERATE=0.0009;THETA=0.0004;AC=1641;AN=2184 GT:DS:GL:BD 0.75137365 1 1 145428332 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4913;AVGPOST=0.9971;RSQ=0.9955;ERATE=0.0005;THETA=0.0016;AC=1073;AN=2184 GT:DS:GL:BD 0.49130037 0 1 145428390 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9156;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145428400 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5319;AVGPOST=0.9951;RSQ=0.9929;ERATE=0.0006;THETA=0.0003;AC=1162;AN=2184 GT:DS:GL:BD 0.53205127 1 1 145428840 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7309;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145428923 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.629;LDAF=0.0044;AVGPOST=0.9969;RSQ=0.7040;ERATE=0.0007;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145428948 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.818;LDAF=0.0036;AVGPOST=0.9983;RSQ=0.8130;ERATE=0.0004;THETA=0.0013;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145428990 . TTG T 107 PASS INDEL;BAVGPOST=1.000;BRSQ=0.734;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.7296;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145429012 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.715;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.5445;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145429359 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.562;LDAF=0.0019;AVGPOST=0.9978;RSQ=0.5769;ERATE=0.0006;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145429595 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6980;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145429601 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7559;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145429741 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145429744 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145429771 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.6817;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145429880 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0126;AVGPOST=0.9995;RSQ=0.9828;ERATE=0.0003;THETA=0.0013;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 145430060 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0012;AVGPOST=0.9983;RSQ=0.3579;ERATE=0.0007;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145430065 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.949;LDAF=0.1786;AVGPOST=0.9883;RSQ=0.9743;ERATE=0.0005;THETA=0.0003;AC=397;AN=2184 GT:DS:GL:BD 0.18177655 0 1 145430111 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0065;AVGPOST=0.9962;RSQ=0.7593;ERATE=0.0007;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145430113 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.749;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4182;ERATE=0.0006;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145430122 . A AG 47 PASS INDEL;BAVGPOST=0.996;BRSQ=0.648;LDAF=0.0122;AVGPOST=0.9867;RSQ=0.5844;ERATE=0.0015;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145430289 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.664;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.3620;ERATE=0.0007;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145430439 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0036;AVGPOST=0.9984;RSQ=0.8514;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145430538 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0052;AVGPOST=0.9983;RSQ=0.8723;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145430753 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0135;AVGPOST=0.9994;RSQ=0.9822;ERATE=0.0004;THETA=0.0008;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 145430896 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.672;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.5897;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145431073 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.983;LDAF=0.1785;AVGPOST=0.9946;RSQ=0.9880;ERATE=0.0005;THETA=0.0009;AC=390;AN=2184 GT:DS:GL:BD 0.17857143 0 1 145431111 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0028;AVGPOST=0.9995;RSQ=0.9286;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145431128 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.816;LDAF=0.0196;AVGPOST=0.9941;RSQ=0.8855;ERATE=0.0005;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 145431222 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.592;LDAF=0.0015;AVGPOST=0.9977;RSQ=0.3375;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145431544 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.732;LDAF=0.0053;AVGPOST=0.9952;RSQ=0.6314;ERATE=0.0005;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145431560 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0027;AVGPOST=0.9975;RSQ=0.6360;ERATE=0.0004;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145431600 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.683;LDAF=0.0027;AVGPOST=0.9969;RSQ=0.5528;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145431796 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9543;ERATE=0.0003;THETA=0.0020;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145431978 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.759;LDAF=0.0038;AVGPOST=0.9983;RSQ=0.8187;ERATE=0.0005;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145432028 rs67539702 TGAGTGACA T 57447 PASS INDEL;BAVGPOST=0.960;BRSQ=0.928;LDAF=0.5031;AVGPOST=0.9275;RSQ=0.8936;ERATE=0.0149;THETA=0.0005;AC=1120;AN=2184 GT:DS:GL:BD 0.51282054 1 1 145432363 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4922;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145432404 . AAG A 146 PASS INDEL;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5749;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145432446 . G GA 19 PASS INDEL;BAVGPOST=0.986;BRSQ=0.481;LDAF=0.0258;AVGPOST=0.9704;RSQ=0.5325;ERATE=0.0060;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 145432464 . GT G 182 PASS INDEL;BAVGPOST=0.966;BRSQ=0.443;LDAF=0.0516;AVGPOST=0.9310;RSQ=0.4258;ERATE=0.0158;THETA=0.0006;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 145432861 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6586;ERATE=0.0005;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145432890 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145432941 . C CGTTT 1409 PASS INDEL;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9808;ERATE=0.0004;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145433019 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6809;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145433222 . C CA 412 PASS INDEL;BAVGPOST=0.951;BRSQ=0.522;LDAF=0.0796;AVGPOST=0.9069;RSQ=0.4788;ERATE=0.0250;THETA=0.0010;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 145433242 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5325;AVGPOST=0.9904;RSQ=0.9853;ERATE=0.0007;THETA=0.0007;AC=1165;AN=2184 GT:DS:GL:BD 0.53342491 1 1 145433254 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.7966;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145433262 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145433270 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145433571 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0145;AVGPOST=0.9994;RSQ=0.9800;ERATE=0.0004;THETA=0.0010;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 145433588 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.753;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0004;THETA=0.0068;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145433654 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145433672 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7285;ERATE=0.0005;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145433850 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.969;LDAF=0.0282;AVGPOST=0.9936;RSQ=0.9160;ERATE=0.0007;THETA=0.0014;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 145434016 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.587;LDAF=0.0031;AVGPOST=0.9960;RSQ=0.4649;ERATE=0.0005;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145434019 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0137;AVGPOST=0.9989;RSQ=0.9708;ERATE=0.0004;THETA=0.0012;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 145434119 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0182;AVGPOST=0.9993;RSQ=0.9843;ERATE=0.0004;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 145434148 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.718;LDAF=0.0076;AVGPOST=0.9955;RSQ=0.7728;ERATE=0.0006;THETA=0.0057;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 145434744 rs77228265 AG A 9919 PASS INDEL;BAVGPOST=0.907;BRSQ=0.802;LDAF=0.2739;AVGPOST=0.9178;RSQ=0.8704;ERATE=0.0016;THETA=0.0009;AC=613;AN=2184 GT:DS:GL:BD 0.28067765 0 1 145434746 . GT G 854 PASS INDEL;BAVGPOST=0.898;BRSQ=0.779;LDAF=0.2445;AVGPOST=0.8978;RSQ=0.8272;ERATE=0.0006;THETA=0.0006;AC=554;AN=2184 GT:DS:GL:BD 0.25366300 0 1 145434907 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=0.9983;RSQ=0.8837;ERATE=0.0004;THETA=0.0040;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145434931 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.966;LDAF=0.1771;AVGPOST=0.9921;RSQ=0.9807;ERATE=0.0005;THETA=0.0056;AC=386;AN=2184 GT:DS:GL:BD 0.17673993 0 1 145435286 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145435400 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7290;ERATE=0.0004;THETA=0.0085;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145435666 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7231;ERATE=0.0003;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145435675 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0022;AVGPOST=0.9985;RSQ=0.7748;ERATE=0.0007;THETA=0.0024;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145435923 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6377;ERATE=0.0004;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145436200 . T TTTTGATG 379 PASS INDEL;BAVGPOST=0.999;BRSQ=0.730;LDAF=0.0043;AVGPOST=0.9952;RSQ=0.5615;ERATE=0.0006;THETA=0.0035;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145436286 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.743;LDAF=0.0045;AVGPOST=0.9974;RSQ=0.7590;ERATE=0.0009;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145436301 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.784;LDAF=0.0046;AVGPOST=0.9981;RSQ=0.8123;ERATE=0.0006;THETA=0.0016;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145436363 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.812;LDAF=0.0030;AVGPOST=0.9993;RSQ=0.9032;ERATE=0.0003;THETA=0.0024;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145436447 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.6076;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145436482 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0272;AVGPOST=0.9990;RSQ=0.9868;ERATE=0.0003;THETA=0.0016;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 145436632 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=1.0000;RSQ=0.9963;ERATE=0.0003;THETA=0.0029;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 145436860 . A AG 27 PASS INDEL;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6966;ERATE=0.0005;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145436886 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.935;LDAF=0.0928;AVGPOST=0.9905;RSQ=0.9564;ERATE=0.0004;THETA=0.0018;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 145436924 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.673;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8405;ERATE=0.0003;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145436927 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0028;AVGPOST=0.9981;RSQ=0.7594;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145437152 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6404;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145437217 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.867;LDAF=0.0208;AVGPOST=0.9954;RSQ=0.9126;ERATE=0.0006;THETA=0.0007;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 145437220 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0001;AVGPOST=0.9998;RSQ=0.0498;ERATE=0.0004;THETA=0.0042;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 145437310 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.851;LDAF=0.0299;AVGPOST=0.9928;RSQ=0.8994;ERATE=0.0007;THETA=0.0007;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 145437352 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5435;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145437461 . CAAGA C 187 PASS INDEL;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8182;ERATE=0.0004;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145437483 . G GA 191 PASS INDEL;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0048;AVGPOST=0.9968;RSQ=0.7650;ERATE=0.0005;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145437514 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0269;AVGPOST=0.9992;RSQ=0.9893;ERATE=0.0003;THETA=0.0011;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 145437612 . CACAG C 86 PASS INDEL;BAVGPOST=1.000;BRSQ=0.748;LDAF=0.0018;AVGPOST=0.9975;RSQ=0.4455;ERATE=0.0006;THETA=0.0038;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145437819 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0046;AVGPOST=0.9997;RSQ=0.9686;ERATE=0.0003;THETA=0.0012;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145437963 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9797;ERATE=0.0003;THETA=0.0040;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145437978 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7309;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145438067 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.916;LDAF=0.0189;AVGPOST=0.9968;RSQ=0.9322;ERATE=0.0006;THETA=0.0034;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 145438083 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8474;ERATE=0.0004;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145438107 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.922;LDAF=0.0127;AVGPOST=0.9992;RSQ=0.9739;ERATE=0.0003;THETA=0.0016;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 145438155 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0017;AVGPOST=0.9987;RSQ=0.6639;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145438239 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.803;LDAF=0.0032;AVGPOST=0.9965;RSQ=0.6342;ERATE=0.0007;THETA=0.0049;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145438267 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8683;ERATE=0.0007;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145438313 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145438321 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6194;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145438372 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5198;ERATE=0.0005;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145438376 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0031;AVGPOST=0.9991;RSQ=0.8611;ERATE=0.0005;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145438492 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8523;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145438499 . CCT C 572 PASS INDEL;BAVGPOST=0.996;BRSQ=0.726;LDAF=0.0077;AVGPOST=0.9990;RSQ=0.9313;ERATE=0.0004;THETA=0.0032;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 145438578 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9999;AVGPOST=0.9998;RSQ=0.0498;ERATE=0.0003;THETA=0.0024;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 145438581 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.1174;AVGPOST=0.9985;RSQ=0.9937;ERATE=0.0003;THETA=0.0011;AC=256;AN=2184 GT:DS:GL:BD 0.11721612 0 1 145438594 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7047;ERATE=0.0005;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145438614 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145438615 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145438696 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0050;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0053;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145438749 . C CT 58 PASS INDEL;BAVGPOST=0.989;BRSQ=0.484;LDAF=0.0194;AVGPOST=0.9734;RSQ=0.4475;ERATE=0.0059;THETA=0.0009;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145438826 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0008;AVGPOST=0.9999;RSQ=0.9310;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145438971 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145439125 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145439177 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145439178 . C CT 114 PASS INDEL;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0027;AVGPOST=0.9977;RSQ=0.6548;ERATE=0.0006;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145439210 . T TC 1361 PASS INDEL;BAVGPOST=0.991;BRSQ=0.814;LDAF=0.0280;AVGPOST=0.9825;RSQ=0.7700;ERATE=0.0022;THETA=0.0008;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 145439218 . C CA 74 PASS INDEL;BAVGPOST=0.987;BRSQ=0.518;LDAF=0.0227;AVGPOST=0.9723;RSQ=0.4984;ERATE=0.0069;THETA=0.0042;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 145439219 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.788;LDAF=0.0081;AVGPOST=0.9950;RSQ=0.7576;ERATE=0.0030;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145439238 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145439297 . TAA T 161 PASS INDEL;BAVGPOST=0.999;BRSQ=0.763;LDAF=0.0023;AVGPOST=0.9973;RSQ=0.5064;ERATE=0.0005;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145439334 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145439349 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0031;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145439392 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145439499 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145439587 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145439620 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9499;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145439782 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145439819 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145439928 . G GA 184 PASS INDEL;BAVGPOST=0.998;BRSQ=0.567;LDAF=0.0019;AVGPOST=0.9972;RSQ=0.4564;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145439984 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145440012 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145440030 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145440086 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.8279;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145440096 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0105;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 145440151 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145440338 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145440346 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145440384 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145440394 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145440446 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145440559 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145440629 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9904;ERATE=0.0004;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145440654 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145440804 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145440921 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145440941 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9524;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145440955 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145440991 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0074;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145441069 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0032;AVGPOST=1.0000;RSQ=0.9932;ERATE=0.0004;THETA=0.0019;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145441110 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145441161 . AAT A 177 PASS INDEL;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0031;AVGPOST=0.9976;RSQ=0.6804;ERATE=0.0005;THETA=0.0045;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145441265 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9406;ERATE=0.0003;THETA=0.0059;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145441286 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6133;ERATE=0.0006;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145441511 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7150;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145441525 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7338;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145441620 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7573;AVGPOST=0.9980;RSQ=0.9966;ERATE=0.0004;THETA=0.0008;AC=1653;AN=2184 GT:DS:GL:BD 0.75686812 1 1 145441621 . G GTCA 3172 PASS INDEL;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0150;AVGPOST=0.9989;RSQ=0.9716;ERATE=0.0006;THETA=0.0010;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 145441679 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7357;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145441742 rs72536950 AAAAG A 511 PASS INDEL;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9287;ERATE=0.0004;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145441840 rs11319561 TA T 80317 PASS INDEL;BAVGPOST=0.993;BRSQ=0.984;LDAF=0.7673;AVGPOST=0.9970;RSQ=0.9944;ERATE=0.0004;THETA=0.0012;AC=1675;AN=2184 GT:DS:GL:BD 0.76694137 1 1 145441842 . AG A 10629 PASS INDEL;BAVGPOST=0.959;BRSQ=0.912;LDAF=0.7241;AVGPOST=0.9230;RSQ=0.8687;ERATE=0.0149;THETA=0.0009;AC=1626;AN=2184 GT:DS:GL:BD 0.74450547 1 1 145441930 . TCTC T 266 PASS INDEL;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6200;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145441976 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7653;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145442017 . C CT 88 PASS INDEL;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7113;ERATE=0.0004;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145442032 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0028;AVGPOST=0.9991;RSQ=0.8573;ERATE=0.0007;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145442060 . T TA 319 PASS INDEL;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=0.9992;RSQ=0.1701;ERATE=0.0004;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 145442169 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5258;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145442171 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9882;ERATE=0.0003;THETA=0.0036;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145442254 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.8066;AVGPOST=0.9973;RSQ=0.9937;ERATE=0.0003;THETA=0.0007;AC=1761;AN=2184 GT:DS:GL:BD 0.80631870 1 1 145442263 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.716;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6495;ERATE=0.0004;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145442264 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.8064;AVGPOST=0.9969;RSQ=0.9931;ERATE=0.0003;THETA=0.0006;AC=1761;AN=2184 GT:DS:GL:BD 0.80631870 1 1 145442323 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.8154;ERATE=0.0003;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145442336 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0037;AVGPOST=0.9989;RSQ=0.9206;ERATE=0.0003;THETA=0.0015;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145442400 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0041;AVGPOST=0.9991;RSQ=0.9255;ERATE=0.0004;THETA=0.0012;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145442459 . T TGA 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.767;LDAF=0.0017;AVGPOST=0.9980;RSQ=0.5661;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145442523 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.740;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7370;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145442578 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0026;AVGPOST=0.9967;RSQ=0.5324;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145442632 . AAAAT A 414 PASS INDEL;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0043;AVGPOST=0.9990;RSQ=0.8975;ERATE=0.0005;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145442659 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.738;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6644;ERATE=0.0004;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145442709 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0028;AVGPOST=0.9991;RSQ=0.8597;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145442777 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0030;AVGPOST=0.9989;RSQ=0.8544;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145442800 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145442835 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0004;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145442847 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0174;AVGPOST=0.9990;RSQ=0.9808;ERATE=0.0004;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 145442973 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8283;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145442991 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0031;AVGPOST=0.9994;RSQ=0.9009;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145443126 . TTGTGTGTGCG T 196 PASS INDEL;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0028;AVGPOST=0.9988;RSQ=0.8313;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145443136 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145443196 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.8989;ERATE=0.0004;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145443372 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7415;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145443565 . ATAG A 952 PASS INDEL;BAVGPOST=0.996;BRSQ=0.783;LDAF=0.0074;AVGPOST=0.9969;RSQ=0.8333;ERATE=0.0006;THETA=0.0013;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145443608 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.779;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0004;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145443632 rs77860902 T TC 33739 PASS INDEL;BAVGPOST=0.991;BRSQ=0.984;LDAF=0.7167;AVGPOST=0.9840;RSQ=0.9762;ERATE=0.0019;THETA=0.0006;AC=1573;AN=2184 GT:DS:GL:BD 0.72023809 1 1 145443665 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0177;AVGPOST=0.9993;RSQ=0.9820;ERATE=0.0005;THETA=0.0011;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 145443673 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6675;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145444220 . AAAAT A 734 PASS INDEL;BAVGPOST=0.999;BRSQ=0.863;LDAF=0.0029;AVGPOST=0.9987;RSQ=0.8051;ERATE=0.0004;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145444474 MERGED_DEL_2_5290 TCTGTGACCAGGAAATTAGGTCAAAGTTGATGGAAAAGTTTTTTCTGTAGCTTGTTTTCCAGGGCCTAGAGGGGTGAAGCAATGATAAGAGCAGGCCAGAGAGCAGGACAAAGGAATGGAGAGACCATGGAGTACATGAGCCTGGTTGTGTGCACAGTTGGGCTACCAGTACCCAATATGAGAAGAGGGA T . . SV;BAVGPOST=0.999;BRSQ=0.469;LDAF=0.0027;AVGPOST=0.9969;RSQ=0.4835;ERATE=0.0008;THETA=0.0005;CIEND=-17,33;CIPOS=-18,19;END=145447394;HOMLEN=3;HOMSEQ=CTG;SOURCE=GenomeStrip_145444467_14544738 GT:DS:GL:BD 0.00137363 0 1 145444556 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3023;AVGPOST=0.9935;RSQ=0.9885;ERATE=0.0006;THETA=0.0005;AC=659;AN=2184 GT:DS:GL:BD 0.30173993 0 1 145444576 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0030;AVGPOST=0.9991;RSQ=0.8801;ERATE=0.0007;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145444698 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145444740 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.755;LDAF=0.0074;AVGPOST=0.9930;RSQ=0.6648;ERATE=0.0004;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145444761 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0029;AVGPOST=0.9972;RSQ=0.6282;ERATE=0.0005;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145444881 rs74982018 AGC A 14228 PASS INDEL;BAVGPOST=0.851;BRSQ=0.754;LDAF=0.5973;AVGPOST=0.8076;RSQ=0.7338;ERATE=0.0289;THETA=0.0006;AC=1392;AN=2184 GT:DS:GL:BD 0.63736266 1 1 145444883 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7567;AVGPOST=0.9961;RSQ=0.9927;ERATE=0.0008;THETA=0.0008;AC=1652;AN=2184 GT:DS:GL:BD 0.75641024 1 1 145445267 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2848;AVGPOST=0.9913;RSQ=0.9850;ERATE=0.0007;THETA=0.0007;AC=620;AN=2184 GT:DS:GL:BD 0.28388280 0 1 145445320 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.653;LDAF=0.0063;AVGPOST=0.9941;RSQ=0.6184;ERATE=0.0012;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145445411 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.6851;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145445442 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.697;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5673;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145445482 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0366;AVGPOST=0.9972;RSQ=0.9676;ERATE=0.0004;THETA=0.0006;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 145445522 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6790;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145445560 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.951;BRSQ=0.874;LDAF=0.7642;AVGPOST=0.9252;RSQ=0.8519;ERATE=0.0153;THETA=0.0005;AC=1712;AN=2184 GT:DS:GL:BD 0.78388280 1 1 145445657 . T TTTA 119 PASS INDEL;BAVGPOST=0.998;BRSQ=0.595;LDAF=0.0033;AVGPOST=0.9968;RSQ=0.5900;ERATE=0.0007;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145445693 . CT C 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.5024;ERATE=0.0005;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145445711 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.634;LDAF=0.0055;AVGPOST=0.9940;RSQ=0.5802;ERATE=0.0010;THETA=0.0016;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145445831 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0109;AVGPOST=0.9992;RSQ=0.9688;ERATE=0.0004;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 145445934 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6141;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145446003 . TGTGACTA T 137 PASS INDEL;BAVGPOST=1.000;BRSQ=0.692;LDAF=0.0027;AVGPOST=0.9956;RSQ=0.2928;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145446137 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0048;AVGPOST=0.9996;RSQ=0.9597;ERATE=0.0004;THETA=0.0010;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145446150 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5131;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145446215 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.896;LDAF=0.0121;AVGPOST=0.9980;RSQ=0.9275;ERATE=0.0004;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 145446285 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8099;AVGPOST=0.9957;RSQ=0.9903;ERATE=0.0010;THETA=0.0004;AC=1768;AN=2184 GT:DS:GL:BD 0.80952382 1 1 145446597 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.5759;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145446699 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0067;AVGPOST=0.9969;RSQ=0.8239;ERATE=0.0005;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145446706 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.950;LDAF=0.7338;AVGPOST=0.9785;RSQ=0.9669;ERATE=0.0026;THETA=0.0002;AC=1610;AN=2184 GT:DS:GL:BD 0.73717946 1 1 145446757 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7672;AVGPOST=0.9984;RSQ=0.9973;ERATE=0.0005;THETA=0.0005;AC=1675;AN=2184 GT:DS:GL:BD 0.76694137 1 1 145446983 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6047;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145446991 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6327;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145446997 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145447275 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4688;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145447297 rs66532651 GA G 77006 PASS INDEL;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.7650;AVGPOST=0.9957;RSQ=0.9922;ERATE=0.0008;THETA=0.0030;AC=1671;AN=2184 GT:DS:GL:BD 0.76510990 1 1 145447480 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145447487 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.828;LDAF=0.0335;AVGPOST=0.9899;RSQ=0.8750;ERATE=0.0008;THETA=0.0010;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 145447532 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0244;AVGPOST=0.9984;RSQ=0.9712;ERATE=0.0007;THETA=0.0008;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 145447535 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.654;LDAF=0.0029;AVGPOST=0.9968;RSQ=0.5181;ERATE=0.0006;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145447629 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.935;LDAF=0.0137;AVGPOST=0.9980;RSQ=0.9448;ERATE=0.0003;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 145447717 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0055;AVGPOST=0.9991;RSQ=0.9433;ERATE=0.0005;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145447820 . T TATAG 630 PASS INDEL;BAVGPOST=0.998;BRSQ=0.716;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7051;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145447978 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4707;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145448025 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0029;AVGPOST=0.9979;RSQ=0.7188;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145448051 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0110;AVGPOST=0.9989;RSQ=0.9580;ERATE=0.0005;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 145448053 . AAAG A 24 PASS INDEL;BAVGPOST=1.000;BRSQ=0.739;LDAF=0.0020;AVGPOST=0.9970;RSQ=0.4207;ERATE=0.0005;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145448270 . A AT 64 PASS INDEL;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0054;AVGPOST=0.9961;RSQ=0.7218;ERATE=0.0004;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145448305 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6443;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145448405 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.7128;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145448668 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145448730 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0069;AVGPOST=1.0000;RSQ=0.9975;ERATE=0.0003;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 145449132 rs67818465 C CT 477 PASS INDEL;BAVGPOST=0.477;BRSQ=0.133;LDAF=0.4536;AVGPOST=0.6361;RSQ=0.3940;ERATE=0.0190;THETA=0.0006;AC=878;AN=2184 GT:DS:GL:BD 0.40201464 0 1 145449217 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4231;ERATE=0.0004;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145449232 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.8065;AVGPOST=0.9954;RSQ=0.9894;ERATE=0.0008;THETA=0.0003;AC=1762;AN=2184 GT:DS:GL:BD 0.80677658 1 1 145449303 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.844;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.7861;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145449309 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0244;AVGPOST=0.9986;RSQ=0.9790;ERATE=0.0005;THETA=0.0011;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 145449355 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145449648 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5908;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145449867 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145450084 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6616;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145450183 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8441;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145450217 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0339;AVGPOST=0.9997;RSQ=0.9964;ERATE=0.0003;THETA=0.0005;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 145450238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0449;AVGPOST=0.9999;RSQ=0.9986;ERATE=0.0003;THETA=0.0005;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 145450316 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0339;AVGPOST=0.9998;RSQ=0.9976;ERATE=0.0003;THETA=0.0006;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 145450326 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.946;LDAF=0.0041;AVGPOST=0.9986;RSQ=0.8866;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145450327 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5869;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145450426 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0446;AVGPOST=0.9995;RSQ=0.9954;ERATE=0.0004;THETA=0.0004;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 145450540 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.666;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4927;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145450727 . C CA 239 PASS INDEL;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0074;AVGPOST=0.9987;RSQ=0.9374;ERATE=0.0005;THETA=0.0034;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 145450781 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8136;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145450793 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7200;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145450794 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8914;ERATE=0.0003;THETA=0.0020;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145450833 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0428;AVGPOST=0.9994;RSQ=0.9942;ERATE=0.0003;THETA=0.0004;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 145450870 . A AT 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5062;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145450881 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6736;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145451150 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.7703;AVGPOST=0.9977;RSQ=0.9954;ERATE=0.0006;THETA=0.0007;AC=1682;AN=2184 GT:DS:GL:BD 0.77014655 1 1 145451253 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.957;LDAF=0.0174;AVGPOST=0.9978;RSQ=0.9538;ERATE=0.0005;THETA=0.0005;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 145451342 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2908;AVGPOST=0.9887;RSQ=0.9822;ERATE=0.0006;THETA=0.0010;AC=634;AN=2184 GT:DS:GL:BD 0.29029304 0 1 145451539 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8617;ERATE=0.0003;THETA=0.0093;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145451604 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8894;ERATE=0.0003;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145451774 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0311;AVGPOST=0.9988;RSQ=0.9863;ERATE=0.0005;THETA=0.0012;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 145451876 . AC A 31 PASS INDEL;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5095;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145452134 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0800;AVGPOST=0.9998;RSQ=0.9991;ERATE=0.0004;THETA=0.0008;AC=175;AN=2184 GT:DS:GL:BD 0.08012821 0 1 145452140 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6789;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145452291 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5842;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145452353 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8084;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145452376 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5517;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145452403 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0377;AVGPOST=0.9995;RSQ=0.9958;ERATE=0.0003;THETA=0.0011;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 145452475 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0052;AVGPOST=0.9997;RSQ=0.9750;ERATE=0.0003;THETA=0.0016;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145452751 . GTTTGA G 4807 PASS INDEL;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0249;AVGPOST=0.9974;RSQ=0.9537;ERATE=0.0006;THETA=0.0007;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 145452864 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145453062 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145453128 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0003;THETA=0.0033;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145453193 . TA T 130 PASS INDEL;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7230;ERATE=0.0005;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145453364 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0380;AVGPOST=0.9998;RSQ=0.9974;ERATE=0.0003;THETA=0.0009;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 145453698 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.849;LDAF=0.0085;AVGPOST=0.9987;RSQ=0.9385;ERATE=0.0004;THETA=0.0010;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 145453858 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5466;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145453939 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145454118 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9214;ERATE=0.0004;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145454318 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0910;AVGPOST=0.9994;RSQ=0.9975;ERATE=0.0004;THETA=0.0008;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 145454519 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.749;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5960;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145454655 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0023;AVGPOST=0.9992;RSQ=0.8732;ERATE=0.0003;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145454678 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0046;AVGPOST=0.9983;RSQ=0.8471;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145454685 . TCAACA T 113 PASS INDEL;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0010;AVGPOST=0.9985;RSQ=0.3487;ERATE=0.0006;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145454716 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0825;AVGPOST=0.9993;RSQ=0.9968;ERATE=0.0004;THETA=0.0022;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 145454922 . TGG T 11 PASS INDEL;BAVGPOST=0.999;BRSQ=0.699;LDAF=0.0023;AVGPOST=0.9979;RSQ=0.6253;ERATE=0.0006;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145454946 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6939;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145454997 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0380;AVGPOST=0.9998;RSQ=0.9979;ERATE=0.0003;THETA=0.0011;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 145455150 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0036;AVGPOST=0.9994;RSQ=0.9292;ERATE=0.0003;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145455340 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9035;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145455641 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9311;ERATE=0.0004;THETA=0.0020;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145455753 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5922;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145455785 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0366;AVGPOST=0.9997;RSQ=0.9963;ERATE=0.0004;THETA=0.0009;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 145455818 . AT A 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7416;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145455865 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0271;AVGPOST=0.9997;RSQ=0.9946;ERATE=0.0004;THETA=0.0009;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 145455910 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0368;AVGPOST=0.9994;RSQ=0.9939;ERATE=0.0003;THETA=0.0005;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 145455941 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6980;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145455965 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7044;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145455998 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0367;AVGPOST=0.9998;RSQ=0.9974;ERATE=0.0004;THETA=0.0027;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 145456034 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8316;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145456053 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9998;RSQ=0.9923;ERATE=0.0004;THETA=0.0010;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 145456081 . AAT A 128 PASS INDEL;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145456354 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8148;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145456464 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145456560 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145456596 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145456645 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145456731 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0443;AVGPOST=1.0000;RSQ=0.9995;ERATE=0.0003;THETA=0.0011;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 145456808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0110;AVGPOST=0.9999;RSQ=0.9946;ERATE=0.0003;THETA=0.0021;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 145456821 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145456852 . A AAG 334 PASS INDEL;BAVGPOST=0.999;BRSQ=0.760;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7216;ERATE=0.0005;THETA=0.0020;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145456856 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145456908 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.967;LDAF=0.0419;AVGPOST=0.9942;RSQ=0.9600;ERATE=0.0021;THETA=0.0019;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 145457007 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0041;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0029;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145457015 . CTCT C 177 PASS INDEL;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145457198 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145457363 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145457443 rs3215863 AT A 2975 PASS INDEL;BAVGPOST=0.992;BRSQ=0.773;LDAF=0.0176;AVGPOST=0.9927;RSQ=0.8209;ERATE=0.0011;THETA=0.0007;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 145457481 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0032;AVGPOST=0.9994;RSQ=0.9287;ERATE=0.0003;THETA=0.0013;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145457489 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9732;ERATE=0.0007;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145457513 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145457621 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145457714 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0366;AVGPOST=0.9999;RSQ=0.9983;ERATE=0.0003;THETA=0.0011;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 145457864 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.8415;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145458032 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=1.0000;RSQ=0.9968;ERATE=0.0003;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 145458260 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.700;LDAF=0.0039;AVGPOST=0.9978;RSQ=0.7657;ERATE=0.0005;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145458346 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.491;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.3959;ERATE=0.0006;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145458348 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.625;LDAF=0.0040;AVGPOST=0.9973;RSQ=0.7318;ERATE=0.0006;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145458525 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.602;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7044;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145458706 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.756;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5570;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145458772 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4371;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145458791 . C CT 74 PASS INDEL;BAVGPOST=0.976;BRSQ=0.443;LDAF=0.0431;AVGPOST=0.9416;RSQ=0.4507;ERATE=0.0093;THETA=0.0012;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 145458895 . T TGCCTCA 765 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0043;AVGPOST=0.9988;RSQ=0.8692;ERATE=0.0004;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145458896 . G GC 152 PASS INDEL;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0023;AVGPOST=0.9976;RSQ=0.6190;ERATE=0.0004;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145459259 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.6800;ERATE=0.0004;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145459274 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4484;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145459406 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0379;AVGPOST=0.9995;RSQ=0.9937;ERATE=0.0004;THETA=0.0009;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 145459511 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145459810 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9809;ERATE=0.0003;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145459822 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145459902 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0444;AVGPOST=1.0000;RSQ=0.9995;ERATE=0.0003;THETA=0.0016;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 145459935 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145459985 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0105;AVGPOST=1.0000;RSQ=0.9981;ERATE=0.0003;THETA=0.0021;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 145460000 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0905;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0023;AC=198;AN=2184 GT:DS:GL:BD 0.09065934 0 1 145460048 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145460160 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145460328 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0058;AVGPOST=0.9992;RSQ=0.9466;ERATE=0.0004;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145460374 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.731;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.7055;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145460817 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7651;ERATE=0.0005;THETA=0.0042;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145460898 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0069;AVGPOST=0.9990;RSQ=0.9389;ERATE=0.0005;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145461027 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.8898;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145461031 . TGGG T 24 PASS INDEL;BAVGPOST=1.000;BRSQ=0.744;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.3893;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145461104 rs35199064 C CT 1054 PASS INDEL;BAVGPOST=0.544;BRSQ=0.156;LDAF=0.4222;AVGPOST=0.6597;RSQ=0.3801;ERATE=0.0238;THETA=0.0005;AC=837;AN=2184 GT:DS:GL:BD 0.38324177 0 1 145461126 rs35744016 T TA 15417 PASS INDEL;BAVGPOST=0.994;BRSQ=0.988;LDAF=0.3010;AVGPOST=0.9660;RSQ=0.9442;ERATE=0.0006;THETA=0.0020;AC=653;AN=2184 GT:DS:GL:BD 0.29899266 0 1 145461156 . TC T 60 PASS INDEL;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7465;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145461205 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0056;AVGPOST=0.9989;RSQ=0.9290;ERATE=0.0004;THETA=0.0011;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145461238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6616;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145461579 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.774;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145461766 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.876;LDAF=0.0236;AVGPOST=0.9953;RSQ=0.9222;ERATE=0.0004;THETA=0.0010;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 145461935 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.974;LDAF=0.0313;AVGPOST=0.9987;RSQ=0.9857;ERATE=0.0004;THETA=0.0012;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 145462050 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0902;AVGPOST=0.9989;RSQ=0.9955;ERATE=0.0005;THETA=0.0024;AC=197;AN=2184 GT:DS:GL:BD 0.09020147 0 1 145462061 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.738;LDAF=0.0026;AVGPOST=0.9977;RSQ=0.6886;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145462080 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8559;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145462155 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8118;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145462180 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0376;AVGPOST=0.9996;RSQ=0.9958;ERATE=0.0004;THETA=0.0008;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 145462215 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.798;LDAF=0.0054;AVGPOST=0.9976;RSQ=0.8273;ERATE=0.0004;THETA=0.0021;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145462239 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6392;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145462502 . AAAAT A 24 PASS INDEL;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6046;ERATE=0.0004;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145462549 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145462552 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0110;AVGPOST=0.9984;RSQ=0.9478;ERATE=0.0004;THETA=0.0030;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 145462603 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.656;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6517;ERATE=0.0004;THETA=0.0038;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145462730 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.561;LDAF=0.0035;AVGPOST=0.9940;RSQ=0.3514;ERATE=0.0007;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145462930 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.845;LDAF=0.1139;AVGPOST=0.9418;RSQ=0.8087;ERATE=0.0077;THETA=0.0013;AC=211;AN=2184 GT:DS:GL:BD 0.09661172 0 1 145463043 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.859;LDAF=0.0112;AVGPOST=0.9964;RSQ=0.8686;ERATE=0.0007;THETA=0.0009;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 145463045 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.909;LDAF=0.0392;AVGPOST=0.9870;RSQ=0.8749;ERATE=0.0018;THETA=0.0012;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 145463047 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.934;BRSQ=0.752;LDAF=0.1559;AVGPOST=0.9143;RSQ=0.7706;ERATE=0.0155;THETA=0.0012;AC=305;AN=2184 GT:DS:GL:BD 0.13965201 0 1 145463049 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.565;LDAF=0.0431;AVGPOST=0.9673;RSQ=0.6867;ERATE=0.0023;THETA=0.0008;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 145463056 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.426;LDAF=0.0394;AVGPOST=0.9469;RSQ=0.4479;ERATE=0.0076;THETA=0.0010;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 145463058 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.351;LDAF=0.0131;AVGPOST=0.9821;RSQ=0.4743;ERATE=0.0021;THETA=0.0012;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 145463094 rs71077268 T TA 6931 PASS INDEL;BAVGPOST=0.586;BRSQ=0.358;LDAF=0.4759;AVGPOST=0.6754;RSQ=0.4494;ERATE=0.0243;THETA=0.0008;AC=1005;AN=2184 GT:DS:GL:BD 0.46016484 0 1 145463095 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.671;BRSQ=0.395;LDAF=0.3884;AVGPOST=0.7089;RSQ=0.4355;ERATE=0.0409;THETA=0.0008;AC=756;AN=2184 GT:DS:GL:BD 0.34615386 0 1 145463625 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0234;AVGPOST=0.9998;RSQ=0.9958;ERATE=0.0004;THETA=0.0009;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 145463682 . TAA T 5428 PASS INDEL;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0376;AVGPOST=0.9991;RSQ=0.9923;ERATE=0.0004;THETA=0.0009;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 145463929 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0098;AVGPOST=0.9970;RSQ=0.8867;ERATE=0.0004;THETA=0.0013;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145463943 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.411;LDAF=0.0021;AVGPOST=0.9976;RSQ=0.5492;ERATE=0.0006;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145464117 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0120;AVGPOST=0.9971;RSQ=0.9158;ERATE=0.0006;THETA=0.0009;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 145464147 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0086;AVGPOST=0.9985;RSQ=0.9242;ERATE=0.0004;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 145464573 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0070;AVGPOST=0.9978;RSQ=0.8864;ERATE=0.0004;THETA=0.0031;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145464735 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0066;AVGPOST=0.9974;RSQ=0.8427;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 145464834 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.785;LDAF=0.0035;AVGPOST=0.9975;RSQ=0.7006;ERATE=0.0003;THETA=0.0045;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145464922 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.780;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6809;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145464966 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9654;ERATE=0.0004;THETA=0.0017;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145464987 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0020;AVGPOST=0.9975;RSQ=0.5436;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145465011 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145465045 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0027;AVGPOST=0.9995;RSQ=0.9221;ERATE=0.0003;THETA=0.0021;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145465088 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8659;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145465247 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.682;LDAF=0.0033;AVGPOST=0.9950;RSQ=0.4284;ERATE=0.0006;THETA=0.0048;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145465314 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.871;LDAF=0.0489;AVGPOST=0.9921;RSQ=0.9428;ERATE=0.0007;THETA=0.0009;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 145465345 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.496;LDAF=0.0021;AVGPOST=0.9972;RSQ=0.5219;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145465625 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.688;LDAF=0.0023;AVGPOST=0.9988;RSQ=0.7448;ERATE=0.0006;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145465680 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.345;LDAF=0.0346;AVGPOST=0.9537;RSQ=0.4533;ERATE=0.0059;THETA=0.0014;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 145465741 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7534;ERATE=0.0005;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145465793 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.635;LDAF=0.0088;AVGPOST=0.9958;RSQ=0.8092;ERATE=0.0007;THETA=0.0010;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145465814 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.782;LDAF=0.0151;AVGPOST=0.9897;RSQ=0.7553;ERATE=0.0018;THETA=0.0008;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 145466003 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0092;AVGPOST=0.9997;RSQ=0.9850;ERATE=0.0003;THETA=0.0016;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145466011 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.926;LDAF=0.0130;AVGPOST=0.9991;RSQ=0.9709;ERATE=0.0004;THETA=0.0008;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 145466093 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2260;AVGPOST=0.9841;RSQ=0.9676;ERATE=0.0004;THETA=0.0027;AC=492;AN=2184 GT:DS:GL:BD 0.22527473 0 1 145466276 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.550;LDAF=0.0070;AVGPOST=0.9919;RSQ=0.5880;ERATE=0.0019;THETA=0.0043;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145466373 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.406;LDAF=0.0061;AVGPOST=0.9931;RSQ=0.5281;ERATE=0.0016;THETA=0.0017;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145466529 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0043;AVGPOST=0.9972;RSQ=0.7580;ERATE=0.0004;THETA=0.0041;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145466533 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.701;LDAF=0.0071;AVGPOST=0.9978;RSQ=0.8637;ERATE=0.0005;THETA=0.0011;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145466572 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.887;LDAF=0.0131;AVGPOST=0.9958;RSQ=0.8615;ERATE=0.0006;THETA=0.0046;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 145466720 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7682;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145467122 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5717;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145467138 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0019;AVGPOST=0.9974;RSQ=0.5140;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145467318 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0094;AVGPOST=0.9989;RSQ=0.9582;ERATE=0.0004;THETA=0.0011;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145467360 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5518;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145467432 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.744;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.8069;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145467506 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145467523 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.910;LDAF=0.0315;AVGPOST=0.9937;RSQ=0.9256;ERATE=0.0004;THETA=0.0022;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 145467545 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.695;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8864;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145467650 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8523;ERATE=0.0004;THETA=0.0035;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145467723 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.674;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5729;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145467978 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5545;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145467982 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145467987 . G GT 10 PASS INDEL;BAVGPOST=0.992;BRSQ=0.384;LDAF=0.0102;AVGPOST=0.9843;RSQ=0.4057;ERATE=0.0016;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145468126 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145468160 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9554;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145468162 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7697;ERATE=0.0005;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145468166 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8425;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145468292 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.534;LDAF=0.0033;AVGPOST=0.9951;RSQ=0.4387;ERATE=0.0010;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145468292 rs113568292 AT A 6196 PASS INDEL;BAVGPOST=0.986;BRSQ=0.940;LDAF=0.1170;AVGPOST=0.9584;RSQ=0.8704;ERATE=0.0069;THETA=0.0013;AC=232;AN=2184 GT:DS:GL:BD 0.10622711 0 1 145468295 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.720;LDAF=0.0033;AVGPOST=0.9979;RSQ=0.7766;ERATE=0.0004;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145468301 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0017;AVGPOST=0.9979;RSQ=0.5293;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145468302 . TG T 48 PASS INDEL;BAVGPOST=0.993;BRSQ=0.552;LDAF=0.0117;AVGPOST=0.9908;RSQ=0.7011;ERATE=0.0008;THETA=0.0009;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 145468323 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.589;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5518;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145468361 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0051;AVGPOST=0.9972;RSQ=0.7696;ERATE=0.0010;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145468414 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.990;LDAF=0.7147;AVGPOST=0.9856;RSQ=0.9790;ERATE=0.0008;THETA=0.0018;AC=1560;AN=2184 GT:DS:GL:BD 0.71428573 1 1 145468432 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0095;AVGPOST=0.9967;RSQ=0.8425;ERATE=0.0006;THETA=0.0014;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145468531 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.450;LDAF=0.0029;AVGPOST=0.9954;RSQ=0.4483;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145468549 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.636;LDAF=0.0018;AVGPOST=0.9977;RSQ=0.4976;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145468632 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0023;AVGPOST=0.9979;RSQ=0.6665;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145468806 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9824;ERATE=0.0003;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145468824 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0096;AVGPOST=0.9984;RSQ=0.9378;ERATE=0.0003;THETA=0.0007;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145469114 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.413;LDAF=0.0040;AVGPOST=0.9951;RSQ=0.5064;ERATE=0.0009;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145469286 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5123;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145469306 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0003;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145469366 . AATG A 265 PASS INDEL;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0021;AVGPOST=0.9967;RSQ=0.4066;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145469578 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145469746 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0056;AVGPOST=0.9979;RSQ=0.8401;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145469776 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4951;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145469781 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.674;LDAF=0.0015;AVGPOST=0.9978;RSQ=0.3481;ERATE=0.0008;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145469892 . AAGAG A 5502 PASS INDEL;BAVGPOST=0.997;BRSQ=0.964;LDAF=0.0336;AVGPOST=0.9970;RSQ=0.9680;ERATE=0.0006;THETA=0.0005;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 145470166 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145470445 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.768;LDAF=0.0065;AVGPOST=0.9970;RSQ=0.8080;ERATE=0.0004;THETA=0.0012;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145470459 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0041;AVGPOST=0.9992;RSQ=0.9147;ERATE=0.0004;THETA=0.0014;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145470510 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.646;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6404;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145471008 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0004;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145471051 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7874;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145471089 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0092;AVGPOST=0.9992;RSQ=0.9682;ERATE=0.0004;THETA=0.0009;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145471132 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0175;AVGPOST=0.9997;RSQ=0.9926;ERATE=0.0004;THETA=0.0008;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 145471191 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.7154;AVGPOST=0.9948;RSQ=0.9925;ERATE=0.0004;THETA=0.0007;AC=1563;AN=2184 GT:DS:GL:BD 0.71565932 1 1 145471258 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9882;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145471377 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0243;AVGPOST=0.9998;RSQ=0.9965;ERATE=0.0004;THETA=0.0008;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 145471405 . TTC T 46 PASS INDEL;BAVGPOST=0.942;BRSQ=0.072;LDAF=0.0877;AVGPOST=0.8660;RSQ=0.3201;ERATE=0.0092;THETA=0.0009;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 145471483 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0175;AVGPOST=0.9998;RSQ=0.9942;ERATE=0.0004;THETA=0.0011;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 145471514 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.835;LDAF=0.0037;AVGPOST=0.9990;RSQ=0.8879;ERATE=0.0004;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145471549 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9994;AVGPOST=0.9989;RSQ=0.3010;ERATE=0.0004;THETA=0.0008;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 145471682 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9258;ERATE=0.0004;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145471688 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9865;ERATE=0.0004;THETA=0.0013;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145471762 . TGA T 246 PASS INDEL;BAVGPOST=0.999;BRSQ=0.783;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7177;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145471782 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145471860 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0529;AVGPOST=0.9984;RSQ=0.9902;ERATE=0.0003;THETA=0.0012;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 145471964 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8928;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145471996 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.935;LDAF=0.1642;AVGPOST=0.9888;RSQ=0.9721;ERATE=0.0007;THETA=0.0005;AC=356;AN=2184 GT:DS:GL:BD 0.16300367 0 1 145472021 . CAATT C 45 PASS INDEL;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.4970;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145472077 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5215;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145472183 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8288;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145472233 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.717;LDAF=0.0024;AVGPOST=0.9994;RSQ=0.8853;ERATE=0.0004;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145472570 . CA C 95 PASS INDEL;BAVGPOST=0.879;BRSQ=0.167;LDAF=0.1118;AVGPOST=0.8333;RSQ=0.3350;ERATE=0.0114;THETA=0.0006;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 145472582 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.412;LDAF=0.0566;AVGPOST=0.9474;RSQ=0.6271;ERATE=0.0021;THETA=0.0011;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 145472741 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.771;LDAF=0.0064;AVGPOST=0.9941;RSQ=0.6816;ERATE=0.0004;THETA=0.0021;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145472788 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.826;LDAF=0.0233;AVGPOST=0.9929;RSQ=0.8761;ERATE=0.0006;THETA=0.0005;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 145472799 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5706;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145473038 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0088;AVGPOST=0.9938;RSQ=0.7421;ERATE=0.0004;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145473112 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145473133 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4555;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145473273 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0106;AVGPOST=0.9989;RSQ=0.9640;ERATE=0.0004;THETA=0.0050;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 145473300 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145473598 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9144;ERATE=0.0004;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145473657 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0008;AVGPOST=0.9987;RSQ=0.3166;ERATE=0.0004;THETA=0.0009;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 145473827 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8689;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145473902 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145474050 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145474124 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.7557;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145474588 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145474675 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145474700 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7787;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145474730 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145474944 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.697;LDAF=0.0347;AVGPOST=0.9744;RSQ=0.7332;ERATE=0.0067;THETA=0.0008;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 145474968 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.939;LDAF=0.0141;AVGPOST=0.9978;RSQ=0.9365;ERATE=0.0009;THETA=0.0008;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 145475095 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0334;AVGPOST=0.9999;RSQ=0.9982;ERATE=0.0003;THETA=0.0033;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 145475242 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0141;AVGPOST=0.9997;RSQ=0.9899;ERATE=0.0003;THETA=0.0010;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 145475330 . A AC 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145475529 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.942;LDAF=0.0125;AVGPOST=0.9989;RSQ=0.9690;ERATE=0.0004;THETA=0.0011;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 145475555 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0047;AVGPOST=0.9989;RSQ=0.9106;ERATE=0.0006;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145475728 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2218;AVGPOST=0.9863;RSQ=0.9713;ERATE=0.0005;THETA=0.0011;AC=483;AN=2184 GT:DS:GL:BD 0.22115384 0 1 145475751 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0283;AVGPOST=0.9997;RSQ=0.9958;ERATE=0.0004;THETA=0.0011;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 145475770 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.745;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6604;ERATE=0.0004;THETA=0.0026;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145475913 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0101;AVGPOST=0.9999;RSQ=0.9940;ERATE=0.0003;THETA=0.0014;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145475986 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8948;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145476164 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8226;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145476166 . AGT A 112 PASS INDEL;BAVGPOST=0.990;BRSQ=0.614;LDAF=0.0209;AVGPOST=0.9763;RSQ=0.5391;ERATE=0.0090;THETA=0.0008;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 145476306 . CCTAA C 624 PASS INDEL;BAVGPOST=0.999;BRSQ=0.760;LDAF=0.0059;AVGPOST=0.9974;RSQ=0.8309;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145476323 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145476411 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7230;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145476496 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0079;AVGPOST=0.9973;RSQ=0.8684;ERATE=0.0008;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145476571 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0149;AVGPOST=0.9990;RSQ=0.9752;ERATE=0.0004;THETA=0.0011;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 145476665 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8541;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145476721 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0088;AVGPOST=0.9997;RSQ=0.9856;ERATE=0.0003;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 145476896 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0092;AVGPOST=0.9996;RSQ=0.9817;ERATE=0.0004;THETA=0.0017;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145476930 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145476962 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0025;AVGPOST=0.9984;RSQ=0.7432;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145477008 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.681;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5759;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145477100 . TG T 39 PASS INDEL;BAVGPOST=0.999;BRSQ=0.524;LDAF=0.0035;AVGPOST=0.9949;RSQ=0.3965;ERATE=0.0009;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145477223 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.924;LDAF=0.0126;AVGPOST=0.9956;RSQ=0.8567;ERATE=0.0005;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 145477257 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.866;BRSQ=0.259;LDAF=0.1284;AVGPOST=0.8654;RSQ=0.5183;ERATE=0.0076;THETA=0.0013;AC=206;AN=2184 GT:DS:GL:BD 0.09432235 0 1 145477446 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.724;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6612;ERATE=0.0004;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145477516 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0077;AVGPOST=0.9996;RSQ=0.9777;ERATE=0.0003;THETA=0.0016;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145477651 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8305;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145477753 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0069;AVGPOST=0.9997;RSQ=0.9796;ERATE=0.0003;THETA=0.0039;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 145477822 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145477893 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145477959 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0040;AVGPOST=0.9997;RSQ=0.9671;ERATE=0.0003;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145478240 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0081;AVGPOST=0.9993;RSQ=0.9647;ERATE=0.0004;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145478637 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8483;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145478757 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145478762 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0249;AVGPOST=0.9978;RSQ=0.9692;ERATE=0.0005;THETA=0.0006;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 145478795 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145478944 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145479140 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145479177 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8470;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145479193 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7375;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145479219 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8322;AVGPOST=0.9968;RSQ=0.9912;ERATE=0.0005;THETA=0.0009;AC=1818;AN=2184 GT:DS:GL:BD 0.83241761 1 1 145479291 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145479456 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0041;AVGPOST=0.9990;RSQ=0.8961;ERATE=0.0003;THETA=0.0013;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145479486 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0221;AVGPOST=0.9969;RSQ=0.9401;ERATE=0.0004;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 145479560 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0059;AVGPOST=0.9990;RSQ=0.9478;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145479727 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0057;AVGPOST=0.9996;RSQ=0.9735;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145479846 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7703;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145479901 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0013;AVGPOST=0.9997;RSQ=0.9159;ERATE=0.0004;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145480068 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145480309 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6878;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145480542 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.797;LDAF=0.0037;AVGPOST=0.9988;RSQ=0.8821;ERATE=0.0004;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145480569 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0040;AVGPOST=0.9983;RSQ=0.8261;ERATE=0.0007;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145480594 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0654;AVGPOST=0.9998;RSQ=0.9988;ERATE=0.0003;THETA=0.0011;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 145480638 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0653;AVGPOST=0.9998;RSQ=0.9985;ERATE=0.0003;THETA=0.0007;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 145480657 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0101;AVGPOST=0.9999;RSQ=0.9940;ERATE=0.0003;THETA=0.0010;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145480666 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9889;AVGPOST=0.9993;RSQ=0.9728;ERATE=0.0004;THETA=0.0012;AC=2160;AN=2184 GT:DS:GL:BD 0.98901099 1 1 145480681 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145480693 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145480944 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145481005 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0104;AVGPOST=0.9992;RSQ=0.9697;ERATE=0.0004;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145481182 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.660;LDAF=0.0023;AVGPOST=0.9971;RSQ=0.6126;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145481186 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4418;ERATE=0.0006;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145481187 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6122;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145481322 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145481372 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0053;AVGPOST=0.9988;RSQ=0.9085;ERATE=0.0004;THETA=0.0012;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145481434 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0079;AVGPOST=0.9997;RSQ=0.9809;ERATE=0.0004;THETA=0.0021;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145481532 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5348;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145481671 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0175;AVGPOST=0.9996;RSQ=0.9898;ERATE=0.0004;THETA=0.0027;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 145481690 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5946;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145481869 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4468;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145481980 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0057;AVGPOST=0.9976;RSQ=0.8286;ERATE=0.0004;THETA=0.0019;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145482144 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9612;ERATE=0.0004;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145482147 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0050;AVGPOST=0.9990;RSQ=0.9158;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145482248 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0041;AVGPOST=0.9996;RSQ=0.9557;ERATE=0.0003;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145482331 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.919;LDAF=0.0353;AVGPOST=0.9945;RSQ=0.9431;ERATE=0.0014;THETA=0.0015;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 145482390 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5914;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145482502 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0653;AVGPOST=0.9992;RSQ=0.9951;ERATE=0.0004;THETA=0.0011;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 145482529 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0064;AVGPOST=0.9991;RSQ=0.9338;ERATE=0.0004;THETA=0.0015;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 145482533 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0103;AVGPOST=0.9996;RSQ=0.9832;ERATE=0.0003;THETA=0.0008;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145482595 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6330;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145482603 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0041;AVGPOST=0.9999;RSQ=0.9894;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145482739 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9768;ERATE=0.0004;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145482870 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6380;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145482927 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0001;AVGPOST=0.9998;RSQ=0.1098;ERATE=0.0003;THETA=0.0009;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 145483054 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.982;LDAF=0.0311;AVGPOST=0.9971;RSQ=0.9655;ERATE=0.0003;THETA=0.0009;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 145483080 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7755;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145483119 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0142;AVGPOST=0.9999;RSQ=0.9972;ERATE=0.0003;THETA=0.0008;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 145483180 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7512;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145483241 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8148;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145483337 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5953;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145483365 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6072;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145483747 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.705;LDAF=0.0025;AVGPOST=0.9982;RSQ=0.6780;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145483748 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7153;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145483823 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.595;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6784;ERATE=0.0007;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145483984 . TG T 30 PASS INDEL;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0019;AVGPOST=0.9982;RSQ=0.5662;ERATE=0.0007;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145484127 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6505;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145484128 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8855;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145484170 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145484438 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0107;AVGPOST=0.9981;RSQ=0.9362;ERATE=0.0005;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 145484664 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0285;AVGPOST=0.9990;RSQ=0.9861;ERATE=0.0004;THETA=0.0010;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 145484695 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145484698 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.974;LDAF=0.7257;AVGPOST=0.9753;RSQ=0.9618;ERATE=0.0094;THETA=0.0007;AC=1589;AN=2184 GT:DS:GL:BD 0.72756410 1 1 145484701 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.815;LDAF=0.0178;AVGPOST=0.9910;RSQ=0.8101;ERATE=0.0008;THETA=0.0011;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 145484728 . CTG C 819 PASS INDEL;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9812;ERATE=0.0004;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145484736 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8190;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145484878 . GTCT G 201 PASS INDEL;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0043;AVGPOST=0.9991;RSQ=0.9002;ERATE=0.0004;THETA=0.0012;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145484964 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6407;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145485034 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0031;AVGPOST=0.9986;RSQ=0.8394;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145485114 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0106;AVGPOST=0.9982;RSQ=0.9335;ERATE=0.0006;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145485129 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.669;LDAF=0.0045;AVGPOST=0.9962;RSQ=0.6772;ERATE=0.0007;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145485207 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.694;LDAF=0.0035;AVGPOST=0.9950;RSQ=0.3915;ERATE=0.0011;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145485237 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.767;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4012;ERATE=0.0006;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145485328 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0042;AVGPOST=0.9996;RSQ=0.9561;ERATE=0.0004;THETA=0.0015;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145485422 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0247;AVGPOST=0.9986;RSQ=0.9746;ERATE=0.0005;THETA=0.0010;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 145485426 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0142;AVGPOST=0.9999;RSQ=0.9956;ERATE=0.0003;THETA=0.0008;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 145485568 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6035;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145485681 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8316;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145485721 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9524;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145485797 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145485846 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6237;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145485923 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8515;ERATE=0.0003;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145486016 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0047;AVGPOST=0.9990;RSQ=0.9310;ERATE=0.0004;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145486240 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0238;AVGPOST=0.9999;RSQ=0.9975;ERATE=0.0003;THETA=0.0011;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 145486255 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0101;AVGPOST=0.9998;RSQ=0.9900;ERATE=0.0004;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145486390 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.7495;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145486538 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145486616 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8470;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145486767 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0004;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145486856 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145486971 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6230;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145487021 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.5207;ERATE=0.0005;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145487094 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145487167 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145487180 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145487238 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9792;ERATE=0.0005;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145487347 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145487434 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8498;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145487516 . TA T 101 PASS INDEL;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145487837 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9764;ERATE=0.0003;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145487840 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8236;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145487941 . AT A 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0016;AVGPOST=0.9976;RSQ=0.4468;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145487961 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6057;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145487977 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0659;AVGPOST=0.9992;RSQ=0.9956;ERATE=0.0004;THETA=0.0011;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 145487992 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0091;AVGPOST=0.9996;RSQ=0.9838;ERATE=0.0003;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145488039 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9282;ERATE=0.0004;THETA=0.0022;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145488191 . CAACTT C 468 PASS INDEL;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.7804;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145488343 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145488347 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145488363 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0326;AVGPOST=0.9995;RSQ=0.9940;ERATE=0.0004;THETA=0.0004;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 145488368 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5670;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145488376 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7255;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145488412 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145488415 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0200;AVGPOST=0.9992;RSQ=0.9830;ERATE=0.0004;THETA=0.0011;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 145488505 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6492;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145488530 . AG A 101 PASS INDEL;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0018;AVGPOST=0.9993;RSQ=0.8369;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145488593 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0104;AVGPOST=0.9994;RSQ=0.9751;ERATE=0.0004;THETA=0.0028;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145488623 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.760;LDAF=0.0048;AVGPOST=0.9973;RSQ=0.7495;ERATE=0.0006;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145488694 . AC A 384 PASS INDEL;BAVGPOST=0.994;BRSQ=0.742;LDAF=0.0129;AVGPOST=0.9909;RSQ=0.7328;ERATE=0.0009;THETA=0.0010;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 145488728 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.715;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.3269;ERATE=0.0007;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145488900 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9544;ERATE=0.0004;THETA=0.0013;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145488951 . G GT 137 PASS INDEL;BAVGPOST=0.986;BRSQ=0.562;LDAF=0.0294;AVGPOST=0.9632;RSQ=0.4763;ERATE=0.0112;THETA=0.0012;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 145489132 . A AT 331 PASS INDEL;BAVGPOST=0.731;BRSQ=0.206;LDAF=0.2894;AVGPOST=0.6544;RSQ=0.2931;ERATE=0.0402;THETA=0.0017;AC=384;AN=2184 GT:DS:GL:BD 0.17582418 0 1 145489273 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.933;LDAF=0.0940;AVGPOST=0.9903;RSQ=0.9553;ERATE=0.0006;THETA=0.0013;AC=201;AN=2184 GT:DS:GL:BD 0.09203297 0 1 145489357 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.746;LDAF=0.0177;AVGPOST=0.9941;RSQ=0.8633;ERATE=0.0007;THETA=0.0007;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 145489423 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.447;LDAF=0.0046;AVGPOST=0.9926;RSQ=0.3494;ERATE=0.0012;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145489562 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.711;LDAF=0.0086;AVGPOST=0.9929;RSQ=0.6483;ERATE=0.0010;THETA=0.0011;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145489716 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0083;AVGPOST=0.9990;RSQ=0.9492;ERATE=0.0004;THETA=0.0012;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145489738 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.571;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4298;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145489762 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0094;AVGPOST=0.9991;RSQ=0.9613;ERATE=0.0003;THETA=0.0007;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145489815 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4955;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145489895 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9280;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145489897 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.708;LDAF=0.0056;AVGPOST=0.9970;RSQ=0.7774;ERATE=0.0006;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145489965 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.617;LDAF=0.0023;AVGPOST=0.9973;RSQ=0.5078;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145490231 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.6475;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145490311 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9773;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145490344 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7143;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145490400 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0941;AVGPOST=0.9991;RSQ=0.9968;ERATE=0.0004;THETA=0.0004;AC=205;AN=2184 GT:DS:GL:BD 0.09386447 0 1 145490406 . AC A 1358 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0099;AVGPOST=0.9981;RSQ=0.9369;ERATE=0.0003;THETA=0.0010;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145490513 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.855;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8481;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145490746 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0243;AVGPOST=0.9996;RSQ=0.9923;ERATE=0.0005;THETA=0.0007;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 145490766 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0148;AVGPOST=0.9984;RSQ=0.9565;ERATE=0.0004;THETA=0.0007;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 145490796 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0045;AVGPOST=0.9953;RSQ=0.5986;ERATE=0.0015;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145491319 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.823;LDAF=0.0067;AVGPOST=0.9955;RSQ=0.7648;ERATE=0.0005;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145491396 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0244;AVGPOST=0.9994;RSQ=0.9882;ERATE=0.0004;THETA=0.0028;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 145491399 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.8722;ERATE=0.0005;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145491428 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145491449 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0102;AVGPOST=0.9996;RSQ=0.9841;ERATE=0.0004;THETA=0.0010;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145491452 . T TAG 332 PASS INDEL;BAVGPOST=0.999;BRSQ=0.724;LDAF=0.0040;AVGPOST=0.9984;RSQ=0.8391;ERATE=0.0005;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145491543 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9741;ERATE=0.0004;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145491595 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8496;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145491690 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9592;ERATE=0.0004;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145491706 . G GA 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4606;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145491782 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0020;AVGPOST=0.9980;RSQ=0.6568;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145491909 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0326;AVGPOST=0.9996;RSQ=0.9947;ERATE=0.0004;THETA=0.0010;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 145492136 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0174;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 145492385 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145492408 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145492548 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0041;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145492745 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0091;AVGPOST=0.9991;RSQ=0.9594;ERATE=0.0003;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 145492816 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5712;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145492886 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0094;AVGPOST=0.9995;RSQ=0.9790;ERATE=0.0004;THETA=0.0011;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145492915 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4759;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145493044 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0102;AVGPOST=0.9977;RSQ=0.9193;ERATE=0.0005;THETA=0.0008;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145493140 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0110;AVGPOST=0.9980;RSQ=0.9390;ERATE=0.0005;THETA=0.0008;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145493460 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0326;AVGPOST=0.9997;RSQ=0.9959;ERATE=0.0004;THETA=0.0010;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 145493644 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6100;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145493782 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0939;AVGPOST=0.9992;RSQ=0.9965;ERATE=0.0004;THETA=0.0021;AC=205;AN=2184 GT:DS:GL:BD 0.09386447 0 1 145493933 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.6891;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145494075 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9889;AVGPOST=0.9995;RSQ=0.9804;ERATE=0.0003;THETA=0.0031;AC=2160;AN=2184 GT:DS:GL:BD 0.98901099 1 1 145494110 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0061;AVGPOST=0.9987;RSQ=0.9238;ERATE=0.0005;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145494259 . CTGT C 627 PASS INDEL;BAVGPOST=0.997;BRSQ=0.722;LDAF=0.0069;AVGPOST=0.9988;RSQ=0.9214;ERATE=0.0004;THETA=0.0018;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145494263 . AAT A 499 PASS INDEL;BAVGPOST=0.997;BRSQ=0.722;LDAF=0.0076;AVGPOST=0.9970;RSQ=0.8242;ERATE=0.0005;THETA=0.0015;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145494278 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.704;LDAF=0.0037;AVGPOST=0.9971;RSQ=0.7045;ERATE=0.0004;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145494519 rs60579602 CA C 683 PASS INDEL;BAVGPOST=0.843;BRSQ=0.471;LDAF=0.2298;AVGPOST=0.7446;RSQ=0.3976;ERATE=0.0417;THETA=0.0012;AC=310;AN=2184 GT:DS:GL:BD 0.14194140 0 1 145494559 rs71926082 GAAAT G 69325 PASS INDEL;BAVGPOST=0.972;BRSQ=0.952;LDAF=0.6992;AVGPOST=0.9572;RSQ=0.9408;ERATE=0.0073;THETA=0.0005;AC=1544;AN=2184 GT:DS:GL:BD 0.70695972 1 1 145494717 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0066;AVGPOST=0.9962;RSQ=0.7694;ERATE=0.0007;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 145494834 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6664;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145494884 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.675;LDAF=0.0035;AVGPOST=0.9970;RSQ=0.6585;ERATE=0.0006;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145495079 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0081;AVGPOST=0.9992;RSQ=0.9540;ERATE=0.0005;THETA=0.0028;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145495103 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6652;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145495173 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7742;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145495193 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4407;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145495195 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0092;AVGPOST=0.9997;RSQ=0.9869;ERATE=0.0004;THETA=0.0011;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145495254 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0016;AVGPOST=0.9982;RSQ=0.5931;ERATE=0.0006;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145495270 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.632;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.5119;ERATE=0.0005;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145495359 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.755;LDAF=0.0024;AVGPOST=0.9987;RSQ=0.7875;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145495396 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0029;AVGPOST=0.9994;RSQ=0.9060;ERATE=0.0004;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145495521 . CT C 150 PASS INDEL;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5872;ERATE=0.0005;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145495613 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0422;AVGPOST=0.9971;RSQ=0.9759;ERATE=0.0004;THETA=0.0010;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 145495617 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0059;AVGPOST=0.9984;RSQ=0.8836;ERATE=0.0005;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 145495657 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8847;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145495697 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0047;AVGPOST=0.9988;RSQ=0.8806;ERATE=0.0004;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145495721 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0092;AVGPOST=0.9997;RSQ=0.9869;ERATE=0.0003;THETA=0.0026;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145495842 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7200;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145496108 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.967;LDAF=0.0660;AVGPOST=0.9978;RSQ=0.9881;ERATE=0.0004;THETA=0.0008;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 145496108 . A AG 4788 PASS INDEL;BAVGPOST=0.995;BRSQ=0.964;LDAF=0.0676;AVGPOST=0.9949;RSQ=0.9754;ERATE=0.0004;THETA=0.0012;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 145496256 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.949;LDAF=0.0922;AVGPOST=0.9941;RSQ=0.9774;ERATE=0.0008;THETA=0.0006;AC=200;AN=2184 GT:DS:GL:BD 0.09157509 0 1 145496342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0039;AVGPOST=0.9976;RSQ=0.7635;ERATE=0.0005;THETA=0.0020;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145496581 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0231;AVGPOST=0.9973;RSQ=0.9523;ERATE=0.0004;THETA=0.0013;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 145496593 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5027;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145496594 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.731;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145496687 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4378;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145496705 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0094;AVGPOST=0.9994;RSQ=0.9702;ERATE=0.0004;THETA=0.0009;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145496928 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9968;RSQ=0.8353;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145496996 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.8269;AVGPOST=0.9919;RSQ=0.9769;ERATE=0.0007;THETA=0.0015;AC=1811;AN=2184 GT:DS:GL:BD 0.82921243 1 1 145497016 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.750;LDAF=0.0029;AVGPOST=0.9978;RSQ=0.7006;ERATE=0.0004;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145497162 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.873;LDAF=0.0105;AVGPOST=0.9946;RSQ=0.8067;ERATE=0.0004;THETA=0.0010;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 145497241 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0039;AVGPOST=0.9994;RSQ=0.9402;ERATE=0.0004;THETA=0.0013;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145497422 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.956;LDAF=0.1065;AVGPOST=0.9889;RSQ=0.9520;ERATE=0.0581;THETA=0.0007;AC=226;AN=2184 GT:DS:GL:BD 0.10347985 0 1 145497452 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145497838 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0189;AVGPOST=0.9969;RSQ=0.9432;ERATE=0.0005;THETA=0.0016;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 145497901 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.627;LDAF=0.0488;AVGPOST=0.9529;RSQ=0.6092;ERATE=0.0132;THETA=0.0010;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 145497913 . GTAAGTAAA G 2467 PASS INDEL;BAVGPOST=0.988;BRSQ=0.888;LDAF=0.0504;AVGPOST=0.9826;RSQ=0.8616;ERATE=0.0017;THETA=0.0005;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 145497917 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.787;LDAF=0.1056;AVGPOST=0.9360;RSQ=0.7247;ERATE=0.0281;THETA=0.0011;AC=187;AN=2184 GT:DS:GL:BD 0.08562271 0 1 145497921 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.920;BRSQ=0.740;LDAF=0.2044;AVGPOST=0.9034;RSQ=0.7432;ERATE=0.0420;THETA=0.0015;AC=386;AN=2184 GT:DS:GL:BD 0.17673993 0 1 145498034 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145498060 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145498072 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145498301 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0048;AVGPOST=0.9996;RSQ=0.9763;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145498511 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145498748 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0027;AVGPOST=0.9990;RSQ=0.8467;ERATE=0.0005;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145498800 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0021;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145499089 . CTA C 53 PASS INDEL;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6412;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145499168 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0058;AVGPOST=0.9987;RSQ=0.9215;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145499388 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0116;AVGPOST=0.9997;RSQ=0.9892;ERATE=0.0003;THETA=0.0009;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 145499490 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9691;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145499750 . CTT C 32 PASS INDEL;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6384;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145499854 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145499889 . T TTG 842 PASS INDEL;BAVGPOST=0.996;BRSQ=0.825;LDAF=0.0127;AVGPOST=0.9942;RSQ=0.8124;ERATE=0.0011;THETA=0.0012;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 145499902 . TG T 40 PASS INDEL;BAVGPOST=0.997;BRSQ=0.764;LDAF=0.0135;AVGPOST=0.9913;RSQ=0.7488;ERATE=0.0013;THETA=0.0011;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 145500209 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.846;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.8934;ERATE=0.0003;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145500213 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0665;AVGPOST=0.9972;RSQ=0.9868;ERATE=0.0004;THETA=0.0026;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 145500223 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.919;LDAF=0.0232;AVGPOST=0.9906;RSQ=0.8631;ERATE=0.0019;THETA=0.0013;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 145500223 . GTTTTGT G 198 PASS INDEL;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0065;AVGPOST=0.9968;RSQ=0.7972;ERATE=0.0008;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145500625 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.6782;ERATE=0.0006;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145500801 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.700;LDAF=0.0056;AVGPOST=0.9973;RSQ=0.8166;ERATE=0.0005;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145500917 . G GTC 29884 PASS INDEL;BAVGPOST=0.995;BRSQ=0.984;LDAF=0.8366;AVGPOST=0.9867;RSQ=0.9653;ERATE=0.0012;THETA=0.0003;AC=1830;AN=2184 GT:DS:GL:BD 0.83791208 1 1 145501003 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0040;AVGPOST=0.9995;RSQ=0.9399;ERATE=0.0004;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145501140 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0091;AVGPOST=0.9996;RSQ=0.9838;ERATE=0.0004;THETA=0.0008;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145501246 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0670;AVGPOST=0.9968;RSQ=0.9844;ERATE=0.0005;THETA=0.0005;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 145501250 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.5105;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145501384 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0060;AVGPOST=0.9987;RSQ=0.9133;ERATE=0.0003;THETA=0.0011;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145501455 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.0940;AVGPOST=0.9987;RSQ=0.9953;ERATE=0.0005;THETA=0.0004;AC=205;AN=2184 GT:DS:GL:BD 0.09386447 0 1 145501662 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7872;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145501751 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.668;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.7024;ERATE=0.0004;THETA=0.0034;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145501950 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.692;LDAF=0.0034;AVGPOST=0.9976;RSQ=0.6706;ERATE=0.0008;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145502175 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4778;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145502284 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0120;AVGPOST=0.9962;RSQ=0.8683;ERATE=0.0007;THETA=0.0008;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 145502569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.2222;AVGPOST=0.9901;RSQ=0.9795;ERATE=0.0007;THETA=0.0004;AC=485;AN=2184 GT:DS:GL:BD 0.22206959 0 1 145502645 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145502846 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.750;LDAF=0.0180;AVGPOST=0.9910;RSQ=0.8196;ERATE=0.0005;THETA=0.0033;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 145502878 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.917;LDAF=0.0658;AVGPOST=0.9972;RSQ=0.9845;ERATE=0.0004;THETA=0.0014;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 145503012 . ATC A 13880 PASS INDEL;BAVGPOST=0.967;BRSQ=0.927;LDAF=0.2808;AVGPOST=0.9723;RSQ=0.9529;ERATE=0.0006;THETA=0.0009;AC=621;AN=2184 GT:DS:GL:BD 0.28434065 0 1 145503015 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.922;LDAF=0.2806;AVGPOST=0.9720;RSQ=0.9527;ERATE=0.0005;THETA=0.0009;AC=621;AN=2184 GT:DS:GL:BD 0.28434065 0 1 145503016 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.959;BRSQ=0.910;LDAF=0.2885;AVGPOST=0.9446;RSQ=0.9025;ERATE=0.0054;THETA=0.0012;AC=620;AN=2184 GT:DS:GL:BD 0.28388280 0 1 145503030 . AT A 260 PASS INDEL;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0121;AVGPOST=0.9979;RSQ=0.9286;ERATE=0.0004;THETA=0.0007;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 145503031 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.820;LDAF=0.0221;AVGPOST=0.9781;RSQ=0.6367;ERATE=0.0039;THETA=0.0015;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 145503089 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5833;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145503126 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0049;AVGPOST=0.9984;RSQ=0.8675;ERATE=0.0004;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145503267 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0030;AVGPOST=0.9981;RSQ=0.7477;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145503278 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0048;AVGPOST=0.9996;RSQ=0.9738;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145503324 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=0.9991;RSQ=0.9700;ERATE=0.0003;THETA=0.0033;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145503361 . A AATT 1036 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0114;AVGPOST=0.9981;RSQ=0.9338;ERATE=0.0005;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 145503377 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0067;AVGPOST=0.9963;RSQ=0.7704;ERATE=0.0005;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 145503531 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0181;AVGPOST=0.9962;RSQ=0.9202;ERATE=0.0006;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 145503559 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.939;LDAF=0.0107;AVGPOST=0.9963;RSQ=0.8697;ERATE=0.0007;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145503672 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.810;LDAF=0.0065;AVGPOST=0.9963;RSQ=0.7656;ERATE=0.0017;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145503687 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0093;AVGPOST=0.9991;RSQ=0.9596;ERATE=0.0005;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145503910 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.881;LDAF=0.0474;AVGPOST=0.9934;RSQ=0.9467;ERATE=0.0004;THETA=0.0003;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 145503982 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.702;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5035;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145504285 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5491;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145504289 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.705;LDAF=0.0028;AVGPOST=0.9977;RSQ=0.6750;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145504596 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6802;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145504836 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0106;AVGPOST=0.9989;RSQ=0.9702;ERATE=0.0004;THETA=0.0002;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145504950 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5926;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145505027 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0093;AVGPOST=0.9997;RSQ=0.9849;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145505048 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.839;LDAF=0.0077;AVGPOST=0.9983;RSQ=0.9397;ERATE=0.0004;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145505197 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2952;AVGPOST=0.9919;RSQ=0.9865;ERATE=0.0007;THETA=0.0006;AC=643;AN=2184 GT:DS:GL:BD 0.29441392 0 1 145505223 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145505371 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2971;AVGPOST=0.9949;RSQ=0.9906;ERATE=0.0006;THETA=0.0006;AC=650;AN=2184 GT:DS:GL:BD 0.29761904 0 1 145505376 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0902;AVGPOST=0.9995;RSQ=0.9977;ERATE=0.0003;THETA=0.0003;AC=197;AN=2184 GT:DS:GL:BD 0.09020147 0 1 145505437 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0196;AVGPOST=0.9968;RSQ=0.9414;ERATE=0.0004;THETA=0.0002;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 145505595 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.570;LDAF=0.0050;AVGPOST=0.9955;RSQ=0.6342;ERATE=0.0005;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145505677 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.673;LDAF=0.0030;AVGPOST=0.9949;RSQ=0.3300;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145505808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145505816 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.672;LDAF=0.0026;AVGPOST=0.9956;RSQ=0.4174;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145505893 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0077;AVGPOST=0.9959;RSQ=0.7715;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 145505944 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.652;LDAF=0.0045;AVGPOST=0.9961;RSQ=0.6630;ERATE=0.0013;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145506162 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9890;AVGPOST=0.9997;RSQ=0.9868;ERATE=0.0004;THETA=0.0005;AC=2160;AN=2184 GT:DS:GL:BD 0.98901099 1 1 145506198 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0092;AVGPOST=0.9989;RSQ=0.9528;ERATE=0.0003;THETA=0.0007;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145506358 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6083;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145506431 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.680;LDAF=0.0029;AVGPOST=0.9972;RSQ=0.6183;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145506505 . GGT G 532 PASS INDEL;BAVGPOST=0.919;BRSQ=0.578;LDAF=0.1455;AVGPOST=0.8475;RSQ=0.5005;ERATE=0.0249;THETA=0.0005;AC=208;AN=2184 GT:DS:GL:BD 0.09523810 0 1 145506520 . GT G 746 PASS INDEL;BAVGPOST=0.930;BRSQ=0.649;LDAF=0.1173;AVGPOST=0.9003;RSQ=0.6436;ERATE=0.0123;THETA=0.0005;AC=189;AN=2184 GT:DS:GL:BD 0.08653846 0 1 145506521 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.923;BRSQ=0.674;LDAF=0.1507;AVGPOST=0.8875;RSQ=0.6544;ERATE=0.0243;THETA=0.0005;AC=255;AN=2184 GT:DS:GL:BD 0.11675824 0 1 145506521 . T TG 328 PASS INDEL;BAVGPOST=0.950;BRSQ=0.478;LDAF=0.0776;AVGPOST=0.9147;RSQ=0.5331;ERATE=0.0095;THETA=0.0007;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 145506522 . G GT 509 PASS INDEL;BAVGPOST=0.960;BRSQ=0.603;LDAF=0.0685;AVGPOST=0.9243;RSQ=0.5363;ERATE=0.0090;THETA=0.0003;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 145506523 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.947;BRSQ=0.668;LDAF=0.1109;AVGPOST=0.9076;RSQ=0.6307;ERATE=0.0183;THETA=0.0006;AC=171;AN=2184 GT:DS:GL:BD 0.07829671 0 1 145506582 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.501;LDAF=0.0101;AVGPOST=0.9862;RSQ=0.4999;ERATE=0.0019;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145506698 . AAAC A 94 PASS INDEL;BAVGPOST=0.997;BRSQ=0.639;LDAF=0.0083;AVGPOST=0.9887;RSQ=0.4418;ERATE=0.0023;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145506735 . CAACT C 30 PASS INDEL;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5848;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145506786 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6466;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145506797 . C CT 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7639;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145506887 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0120;AVGPOST=0.9964;RSQ=0.8804;ERATE=0.0005;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 145506955 . T TC 432 PASS INDEL;BAVGPOST=0.995;BRSQ=0.757;LDAF=0.0141;AVGPOST=0.9904;RSQ=0.7421;ERATE=0.0006;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 145506958 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.888;LDAF=0.0097;AVGPOST=0.9988;RSQ=0.9436;ERATE=0.0007;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145506959 . AG A 239 PASS INDEL;BAVGPOST=0.995;BRSQ=0.751;LDAF=0.0133;AVGPOST=0.9922;RSQ=0.7814;ERATE=0.0006;THETA=0.0007;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 145507075 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.763;LDAF=0.0029;AVGPOST=0.9962;RSQ=0.5862;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145507081 . AT A 315 PASS INDEL;BAVGPOST=0.975;BRSQ=0.569;LDAF=0.0271;AVGPOST=0.9777;RSQ=0.7139;ERATE=0.0004;THETA=0.0003;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 145507084 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.929;LDAF=0.0664;AVGPOST=0.9909;RSQ=0.9464;ERATE=0.0008;THETA=0.0004;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 145507085 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.856;LDAF=0.1145;AVGPOST=0.9735;RSQ=0.9114;ERATE=0.0010;THETA=0.0004;AC=241;AN=2184 GT:DS:GL:BD 0.11034799 0 1 145507098 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0093;AVGPOST=0.9997;RSQ=0.9870;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145507101 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0106;AVGPOST=0.9989;RSQ=0.9609;ERATE=0.0004;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145507184 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8560;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145507190 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5104;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145507208 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5887;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145507253 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.8279;AVGPOST=0.9980;RSQ=0.9944;ERATE=0.0004;THETA=0.0005;AC=1808;AN=2184 GT:DS:GL:BD 0.82783884 1 1 145507345 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145507498 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9311;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145507646 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0150;AVGPOST=0.9997;RSQ=0.9922;ERATE=0.0003;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 145507655 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0015;AVGPOST=0.9992;RSQ=0.8271;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145507765 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145507787 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0055;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145507826 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2952;AVGPOST=0.9990;RSQ=0.9983;ERATE=0.0003;THETA=0.0007;AC=644;AN=2184 GT:DS:GL:BD 0.29487181 0 1 145507843 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=0.9999;RSQ=0.0999;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 145507916 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8258;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145507950 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145508010 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0091;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145508146 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0951;AVGPOST=0.9999;RSQ=0.9996;ERATE=0.0004;THETA=0.0008;AC=208;AN=2184 GT:DS:GL:BD 0.09523810 0 1 145508152 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9709;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145508198 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145508200 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145508301 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0087;AVGPOST=1.0000;RSQ=0.9977;ERATE=0.0003;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 145508391 . C CT 45 PASS INDEL;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5086;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145508455 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0096;AVGPOST=0.9996;RSQ=0.9816;ERATE=0.0006;THETA=0.0010;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 145508509 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9855;ERATE=0.0003;THETA=0.0038;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 145508587 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145508878 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145508908 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0009;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 145508909 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 145508912 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 145508913 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0009;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 145509067 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0229;AVGPOST=0.9999;RSQ=0.9982;ERATE=0.0003;THETA=0.0003;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 145509099 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145509217 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0420;AVGPOST=0.9996;RSQ=0.9941;ERATE=0.0004;THETA=0.0003;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 145509236 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9362;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145509257 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6889;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145509278 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0044;AVGPOST=0.9995;RSQ=0.9501;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145509312 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9925;ERATE=0.0004;THETA=0.0022;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145509319 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0087;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 145509320 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0079;AVGPOST=0.9991;RSQ=0.9589;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 145509464 . C CT 173 PASS INDEL;BAVGPOST=0.998;BRSQ=0.906;LDAF=0.0077;AVGPOST=0.9948;RSQ=0.7083;ERATE=0.0010;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 145509631 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0102;AVGPOST=0.9985;RSQ=0.9536;ERATE=0.0004;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 145510360 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145510376 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8238;AVGPOST=0.9965;RSQ=0.9911;ERATE=0.0004;THETA=0.0027;AC=1798;AN=2184 GT:DS:GL:BD 0.82326007 1 1 145510775 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.687;LDAF=0.0032;AVGPOST=0.9967;RSQ=0.5821;ERATE=0.0012;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145510904 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6174;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145510921 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0087;AVGPOST=0.9988;RSQ=0.9499;ERATE=0.0004;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145511138 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.688;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7085;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145511231 . T TTTC 1710 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0107;AVGPOST=0.9985;RSQ=0.9412;ERATE=0.0006;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145511357 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7640;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145511445 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7404;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145511449 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.6211;ERATE=0.0008;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145511535 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0090;AVGPOST=0.9993;RSQ=0.9641;ERATE=0.0004;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 145511613 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8260;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145511928 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.911;LDAF=0.0100;AVGPOST=0.9973;RSQ=0.9136;ERATE=0.0004;THETA=0.0053;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145511990 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7178;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145512001 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7327;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145512060 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.726;LDAF=0.0044;AVGPOST=0.9973;RSQ=0.7677;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145512144 . C CTG 1631 PASS INDEL;BAVGPOST=0.997;BRSQ=0.932;LDAF=0.0176;AVGPOST=0.9952;RSQ=0.9126;ERATE=0.0004;THETA=0.0009;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 145512160 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7090;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145512163 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.954;LDAF=0.0811;AVGPOST=0.9892;RSQ=0.9498;ERATE=0.0017;THETA=0.0002;AC=174;AN=2184 GT:DS:GL:BD 0.07967033 0 1 145512500 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0020;AVGPOST=0.9991;RSQ=0.8229;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145512593 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7497;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145512628 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4880;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145512713 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.7656;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145512799 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.7268;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145512899 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.588;LDAF=0.0072;AVGPOST=0.9963;RSQ=0.7990;ERATE=0.0008;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 145512945 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.463;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4908;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145513011 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0022;AVGPOST=0.9986;RSQ=0.7427;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145513079 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0122;AVGPOST=0.9974;RSQ=0.9321;ERATE=0.0004;THETA=0.0012;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 145513101 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9986;RSQ=0.9326;ERATE=0.0004;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 145513401 . T TC 40 PASS INDEL;BAVGPOST=0.999;BRSQ=0.787;LDAF=0.0043;AVGPOST=0.9961;RSQ=0.6443;ERATE=0.0008;THETA=0.0035;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145513409 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145513482 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9792;ERATE=0.0004;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145513528 . AAAC A 159 PASS INDEL;BAVGPOST=0.999;BRSQ=0.742;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6384;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145513554 . CTT C 133 PASS INDEL;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0006;AVGPOST=0.9989;RSQ=0.2565;ERATE=0.0005;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 145513728 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9227;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145513783 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9989;RSQ=0.9616;ERATE=0.0004;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145513957 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.561;LDAF=0.0244;AVGPOST=0.9773;RSQ=0.6447;ERATE=0.0070;THETA=0.0011;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 145513966 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0092;AVGPOST=0.9998;RSQ=0.9913;ERATE=0.0004;THETA=0.0011;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145513982 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7413;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145514053 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0093;AVGPOST=0.9998;RSQ=0.9891;ERATE=0.0004;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145514082 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0017;AVGPOST=0.9980;RSQ=0.5163;ERATE=0.0006;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145514098 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9888;AVGPOST=0.9991;RSQ=0.9615;ERATE=0.0004;THETA=0.0012;AC=2160;AN=2184 GT:DS:GL:BD 0.98901099 1 1 145514175 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.743;LDAF=0.0013;AVGPOST=0.9980;RSQ=0.3712;ERATE=0.0005;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145514270 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.578;BRSQ=0.334;LDAF=0.4512;AVGPOST=0.7235;RSQ=0.5797;ERATE=0.0098;THETA=0.0006;AC=996;AN=2184 GT:DS:GL:BD 0.45604396 0 1 145514277 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.599;BRSQ=0.292;LDAF=0.3579;AVGPOST=0.7567;RSQ=0.5978;ERATE=0.0022;THETA=0.0006;AC=740;AN=2184 GT:DS:GL:BD 0.33882785 0 1 145514853 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0072;AVGPOST=0.9966;RSQ=0.8305;ERATE=0.0004;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 145514931 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0093;AVGPOST=0.9996;RSQ=0.9827;ERATE=0.0004;THETA=0.0007;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145515224 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145515287 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0105;AVGPOST=0.9989;RSQ=0.9553;ERATE=0.0003;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145515406 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7748;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145515696 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.832;LDAF=0.0039;AVGPOST=0.9993;RSQ=0.9156;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145515715 . C CT 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.738;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.3959;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145515791 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0084;AVGPOST=0.9991;RSQ=0.9549;ERATE=0.0004;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 145515979 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0048;AVGPOST=0.9983;RSQ=0.8657;ERATE=0.0004;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145516050 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0102;AVGPOST=0.9991;RSQ=0.9627;ERATE=0.0004;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145516177 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0146;AVGPOST=0.9988;RSQ=0.9661;ERATE=0.0005;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 145516330 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0103;AVGPOST=0.9995;RSQ=0.9786;ERATE=0.0004;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145516514 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0042;AVGPOST=0.9995;RSQ=0.9507;ERATE=0.0004;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145516653 . CTG C 22 PASS INDEL;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4979;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145516934 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.8033;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145517063 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7218;AVGPOST=0.9980;RSQ=0.9972;ERATE=0.0004;THETA=0.0025;AC=1575;AN=2184 GT:DS:GL:BD 0.72115386 1 1 145517173 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=1.0000;RSQ=0.9941;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145517191 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0676;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 145517240 . TCTC T 181 PASS INDEL;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0020;AVGPOST=0.9985;RSQ=0.6954;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145517252 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0306;AVGPOST=1.0000;RSQ=0.9993;ERATE=0.0004;THETA=0.0004;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 145517277 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145517310 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145517445 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0119;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 145517480 . CT C 38 PASS INDEL;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0032;AVGPOST=0.9969;RSQ=0.6177;ERATE=0.0006;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145517561 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2974;AVGPOST=0.9965;RSQ=0.9946;ERATE=0.0004;THETA=0.0013;AC=647;AN=2184 GT:DS:GL:BD 0.29624543 0 1 145517699 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0093;AVGPOST=0.9995;RSQ=0.9767;ERATE=0.0004;THETA=0.0007;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145517744 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.643;LDAF=0.0031;AVGPOST=0.9989;RSQ=0.8748;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145518189 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145518205 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145518262 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145518306 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8665;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145518312 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8890;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145518441 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9179;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145518443 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0192;AVGPOST=0.9999;RSQ=0.9971;ERATE=0.0003;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 145518590 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8540;ERATE=0.0003;THETA=0.0041;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145518600 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0048;AVGPOST=0.9993;RSQ=0.9324;ERATE=0.0004;THETA=0.0010;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145519072 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0667;AVGPOST=1.0000;RSQ=0.9997;ERATE=0.0003;THETA=0.0008;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 145519100 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5736;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145519515 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0049;AVGPOST=0.9975;RSQ=0.7837;ERATE=0.0010;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145519598 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7882;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145519885 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0027;AVGPOST=0.9982;RSQ=0.7118;ERATE=0.0008;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145519946 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0104;AVGPOST=0.9993;RSQ=0.9690;ERATE=0.0004;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145520026 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0103;AVGPOST=0.9995;RSQ=0.9802;ERATE=0.0004;THETA=0.0014;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145520164 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145520264 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8162;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145520357 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0795;AVGPOST=0.9968;RSQ=0.9870;ERATE=0.0006;THETA=0.0008;AC=174;AN=2184 GT:DS:GL:BD 0.07967033 0 1 145520377 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0021;AVGPOST=0.9987;RSQ=0.7735;ERATE=0.0004;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145520398 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.748;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.5992;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145520537 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0083;AVGPOST=0.9995;RSQ=0.9743;ERATE=0.0004;THETA=0.0013;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 145520583 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0092;AVGPOST=0.9999;RSQ=0.9935;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145520699 . TG T 5394 PASS INDEL;BAVGPOST=0.992;BRSQ=0.959;LDAF=0.0915;AVGPOST=0.9957;RSQ=0.9834;ERATE=0.0007;THETA=0.0010;AC=198;AN=2184 GT:DS:GL:BD 0.09065934 0 1 145520701 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.946;LDAF=0.0915;AVGPOST=0.9859;RSQ=0.9460;ERATE=0.0036;THETA=0.0005;AC=192;AN=2184 GT:DS:GL:BD 0.08791209 0 1 145520705 . T TG 121 PASS INDEL;BAVGPOST=0.996;BRSQ=0.865;LDAF=0.0133;AVGPOST=0.9979;RSQ=0.9395;ERATE=0.0005;THETA=0.0008;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 145520780 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.862;LDAF=0.0041;AVGPOST=0.9991;RSQ=0.8992;ERATE=0.0004;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145520846 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.375;LDAF=0.0035;AVGPOST=0.9946;RSQ=0.3595;ERATE=0.0007;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145520948 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145520987 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145520988 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.674;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6204;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145521093 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6131;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145521200 . AG A 169 PASS INDEL;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7051;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145521205 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8477;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145521350 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0700;AVGPOST=0.9993;RSQ=0.9959;ERATE=0.0004;THETA=0.0005;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 145521404 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0710;AVGPOST=0.9997;RSQ=0.9983;ERATE=0.0004;THETA=0.0013;AC=155;AN=2184 GT:DS:GL:BD 0.07097070 0 1 145521443 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0014;AVGPOST=0.9993;RSQ=0.7744;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145521444 . T TGA 14696 PASS INDEL;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.0908;AVGPOST=0.9979;RSQ=0.9917;ERATE=0.0007;THETA=0.0007;AC=198;AN=2184 GT:DS:GL:BD 0.09065934 0 1 145521687 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.527;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5589;ERATE=0.0004;THETA=0.0042;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145521861 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6802;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145521885 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6368;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145521901 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4885;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145522049 rs112171435 T TCGGCTCA 47052 PASS INDEL;BAVGPOST=0.865;BRSQ=0.742;LDAF=0.7030;AVGPOST=0.8309;RSQ=0.7429;ERATE=0.0132;THETA=0.0008;AC=1623;AN=2184 GT:DS:GL:BD 0.74313188 1 1 145522267 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0711;AVGPOST=0.9995;RSQ=0.9977;ERATE=0.0004;THETA=0.0007;AC=155;AN=2184 GT:DS:GL:BD 0.07097070 0 1 145522283 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9618;ERATE=0.0004;THETA=0.0046;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145522305 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145522380 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9914;ERATE=0.0003;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 145522421 . C CTT 7260 PASS INDEL;BAVGPOST=0.994;BRSQ=0.962;LDAF=0.0805;AVGPOST=0.9932;RSQ=0.9705;ERATE=0.0008;THETA=0.0014;AC=173;AN=2184 GT:DS:GL:BD 0.07921246 0 1 145522425 . G GTT 7507 PASS INDEL;BAVGPOST=0.994;BRSQ=0.962;LDAF=0.0813;AVGPOST=0.9884;RSQ=0.9539;ERATE=0.0005;THETA=0.0009;AC=170;AN=2184 GT:DS:GL:BD 0.07783883 0 1 145522484 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145522605 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145522622 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0018;AVGPOST=1.0000;RSQ=0.9879;ERATE=0.0008;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145522684 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145522821 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145522859 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145522878 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145522933 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145523048 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0051;AVGPOST=1.0000;RSQ=0.9957;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145523186 . C CT 49 PASS INDEL;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145523283 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0041;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145523598 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145523728 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7469;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145523906 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0040;AVGPOST=0.9995;RSQ=0.9416;ERATE=0.0004;THETA=0.0013;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145523964 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.953;LDAF=0.0229;AVGPOST=0.9987;RSQ=0.9745;ERATE=0.0004;THETA=0.0006;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 145524091 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8148;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145524137 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5240;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145524224 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.843;LDAF=0.0097;AVGPOST=0.9965;RSQ=0.8559;ERATE=0.0008;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 145524319 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.737;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.3951;ERATE=0.0006;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145524517 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0054;AVGPOST=0.9983;RSQ=0.8806;ERATE=0.0006;THETA=0.0012;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145524903 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0040;AVGPOST=0.9998;RSQ=0.9784;ERATE=0.0003;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145525085 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0025;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145525145 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145525375 rs67429144 AT A 4810 PASS INDEL;BAVGPOST=0.954;BRSQ=0.878;LDAF=0.2124;AVGPOST=0.9200;RSQ=0.8284;ERATE=0.0052;THETA=0.0014;AC=449;AN=2184 GT:DS:GL:BD 0.20558608 0 1 145525377 . TG T 6776 PASS INDEL;BAVGPOST=0.992;BRSQ=0.085;LDAF=0.9694;AVGPOST=0.9564;RSQ=0.4158;ERATE=0.0030;THETA=0.0006;AC=2145;AN=2184 GT:DS:GL:BD 0.98214287 1 1 145525443 . CATATA C 8 PASS INDEL;BAVGPOST=0.991;BRSQ=0.177;LDAF=0.0535;AVGPOST=0.9245;RSQ=0.4279;ERATE=0.0038;THETA=0.0004;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 145525457 rs66804445 CAT C 1863 PASS INDEL;BAVGPOST=0.937;BRSQ=0.595;LDAF=0.1190;AVGPOST=0.9256;RSQ=0.7515;ERATE=0.0049;THETA=0.0007;AC=227;AN=2184 GT:DS:GL:BD 0.10393773 0 1 145525533 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.293;LDAF=0.0910;AVGPOST=0.8664;RSQ=0.3781;ERATE=0.0075;THETA=0.0029;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 145525582 rs67963132 T TTATA 18789 PASS INDEL;BAVGPOST=0.823;BRSQ=0.644;LDAF=0.7298;AVGPOST=0.8437;RSQ=0.7242;ERATE=0.0045;THETA=0.0017;AC=1632;AN=2184 GT:DS:GL:BD 0.74725276 1 1 145525642 . G GTA 415 PASS INDEL;BAVGPOST=0.972;BRSQ=0.761;LDAF=0.0793;AVGPOST=0.9639;RSQ=0.8268;ERATE=0.0015;THETA=0.0008;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 145525653 . T TAA 2182 PASS INDEL;BAVGPOST=0.973;BRSQ=0.773;LDAF=0.0689;AVGPOST=0.9845;RSQ=0.9134;ERATE=0.0010;THETA=0.0008;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 145525654 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.668;LDAF=0.0586;AVGPOST=0.9807;RSQ=0.8757;ERATE=0.0009;THETA=0.0009;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 145525654 . T TA 1261 PASS INDEL;BAVGPOST=0.976;BRSQ=0.772;LDAF=0.0586;AVGPOST=0.9838;RSQ=0.8995;ERATE=0.0009;THETA=0.0008;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 145525661 . AT A 354 PASS INDEL;BAVGPOST=0.981;BRSQ=0.486;LDAF=0.0282;AVGPOST=0.9791;RSQ=0.7083;ERATE=0.0008;THETA=0.0009;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 145525715 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0030;AVGPOST=0.9992;RSQ=0.8783;ERATE=0.0004;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145525926 rs112626164 AT A 77 PASS INDEL;BAVGPOST=0.958;BRSQ=0.322;LDAF=0.0652;AVGPOST=0.9042;RSQ=0.3803;ERATE=0.0125;THETA=0.0021;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 145526043 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.716;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.6115;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145526083 . CT C 6 PASS INDEL;BAVGPOST=0.999;BRSQ=0.753;LDAF=0.0043;AVGPOST=0.9939;RSQ=0.4249;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145526221 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7303;ERATE=0.0004;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145526256 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145526719 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6541;ERATE=0.0004;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145526750 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9647;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145526777 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0673;AVGPOST=0.9995;RSQ=0.9974;ERATE=0.0004;THETA=0.0010;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 145526882 . A AT 2956 PASS INDEL;BAVGPOST=0.998;BRSQ=0.973;LDAF=0.0195;AVGPOST=0.9967;RSQ=0.9315;ERATE=0.0005;THETA=0.0009;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 145526884 . T TC 327 PASS INDEL;BAVGPOST=0.998;BRSQ=0.966;LDAF=0.0205;AVGPOST=0.9957;RSQ=0.9256;ERATE=0.0003;THETA=0.0006;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 145526916 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0088;AVGPOST=0.9991;RSQ=0.9572;ERATE=0.0004;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 145526977 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145527007 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6141;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145527276 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0058;AVGPOST=0.9958;RSQ=0.7108;ERATE=0.0006;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145527322 . AC A 332 PASS INDEL;BAVGPOST=0.997;BRSQ=0.732;LDAF=0.0084;AVGPOST=0.9916;RSQ=0.5917;ERATE=0.0017;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145527401 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0027;AVGPOST=0.9998;RSQ=0.9632;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145527434 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145527501 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0010;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145527554 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145527604 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0896;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=196;AN=2184 GT:DS:GL:BD 0.08974359 0 1 145527606 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145527781 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145527903 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0055;AVGPOST=1.0000;RSQ=0.9960;ERATE=0.0003;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145527904 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145527979 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145527980 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145528037 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145528136 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0015;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145528301 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145528348 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0015;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145528365 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0087;AVGPOST=1.0000;RSQ=0.9977;ERATE=0.0003;THETA=0.0025;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 145528387 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8763;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145528466 . AAGGT A 247 PASS INDEL;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8199;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145528524 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145528593 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145528755 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145528871 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0107;AVGPOST=0.9987;RSQ=0.9637;ERATE=0.0004;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 145528879 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.701;LDAF=0.0221;AVGPOST=0.9839;RSQ=0.7344;ERATE=0.0035;THETA=0.0007;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 145528967 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0104;AVGPOST=0.9993;RSQ=0.9698;ERATE=0.0004;THETA=0.0010;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145528977 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.751;LDAF=0.0037;AVGPOST=0.9982;RSQ=0.7868;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145528993 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145529002 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145529096 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0109;AVGPOST=0.9982;RSQ=0.9364;ERATE=0.0003;THETA=0.0028;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145529113 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6223;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145529129 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0037;AVGPOST=0.9993;RSQ=0.9219;ERATE=0.0004;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145529358 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5048;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145529400 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.853;LDAF=0.0065;AVGPOST=0.9984;RSQ=0.8930;ERATE=0.0005;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145529477 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8348;ERATE=0.0005;THETA=0.0039;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145529582 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7230;ERATE=0.0005;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145529597 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0800;AVGPOST=0.9966;RSQ=0.9836;ERATE=0.0004;THETA=0.0016;AC=175;AN=2184 GT:DS:GL:BD 0.08012821 0 1 145529644 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.964;LDAF=0.0124;AVGPOST=0.9970;RSQ=0.9034;ERATE=0.0008;THETA=0.0012;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 145529681 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.960;LDAF=0.5899;AVGPOST=0.9343;RSQ=0.9149;ERATE=0.0035;THETA=0.0010;AC=1301;AN=2184 GT:DS:GL:BD 0.59569597 1 1 145529698 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.518;LDAF=0.0054;AVGPOST=0.9942;RSQ=0.5950;ERATE=0.0007;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145529808 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0033;AVGPOST=0.9992;RSQ=0.9073;ERATE=0.0003;THETA=0.0017;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145529857 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145530008 . G GTGTGT 121 PASS INDEL;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0037;AVGPOST=0.9990;RSQ=0.8833;ERATE=0.0004;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145530028 . TATATATAC T 436 PASS INDEL;BAVGPOST=0.999;BRSQ=0.690;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7165;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145530254 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1383;AVGPOST=0.9987;RSQ=0.9962;ERATE=0.0022;THETA=0.0003;AC=302;AN=2184 GT:DS:GL:BD 0.13827839 0 1 145530275 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145530351 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0031;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145530401 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145530512 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0004;THETA=0.0103;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145530691 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145530692 . TAG T 73 PASS INDEL;BAVGPOST=0.998;BRSQ=0.641;LDAF=0.0029;AVGPOST=0.9964;RSQ=0.5046;ERATE=0.0008;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145530759 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145530820 . TC T 14 PASS INDEL;BAVGPOST=0.999;BRSQ=0.745;LDAF=0.0021;AVGPOST=0.9983;RSQ=0.6594;ERATE=0.0006;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145530864 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0011;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 145530865 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145530939 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0021;AVGPOST=0.9996;RSQ=0.9400;ERATE=0.0005;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145530980 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145530990 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145531015 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145531268 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.773;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.6841;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145531269 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0020;AVGPOST=0.9990;RSQ=0.7975;ERATE=0.0004;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145531299 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.755;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6587;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145531355 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0025;AVGPOST=0.9993;RSQ=0.8744;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145531394 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.810;LDAF=0.0081;AVGPOST=0.9961;RSQ=0.8133;ERATE=0.0006;THETA=0.0009;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 145531512 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8664;ERATE=0.0004;THETA=0.0082;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145531707 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0028;AVGPOST=0.9996;RSQ=0.9390;ERATE=0.0004;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145531806 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9419;ERATE=0.0004;THETA=0.0015;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145531880 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145531882 . AG A 29 PASS INDEL;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0086;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145531890 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145531980 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9881;AVGPOST=1.0000;RSQ=0.9983;ERATE=0.0003;THETA=0.0007;AC=2158;AN=2184 GT:DS:GL:BD 0.98809522 1 1 145532151 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 145532291 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145532294 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145532295 . TG T 69 PASS INDEL;BAVGPOST=0.999;BRSQ=0.595;LDAF=0.0012;AVGPOST=0.9983;RSQ=0.4189;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145532311 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145532322 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145532428 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145532476 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0034;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145532549 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9881;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=2158;AN=2184 GT:DS:GL:BD 0.98809522 1 1 145532823 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9920;ERATE=0.0003;THETA=0.0043;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145532993 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145533031 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145533136 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145533140 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145533175 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2234;AVGPOST=0.9998;RSQ=0.9995;ERATE=0.0004;THETA=0.0004;AC=487;AN=2184 GT:DS:GL:BD 0.22298534 0 1 145533256 . G GT 129 PASS INDEL;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5963;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145533314 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4013;AVGPOST=0.9999;RSQ=0.9998;ERATE=0.0003;THETA=0.0005;AC=876;AN=2184 GT:DS:GL:BD 0.40109891 0 1 145533440 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145533451 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0008;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145533486 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145533551 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145533786 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145533883 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145533982 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145534315 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0228;AVGPOST=1.0000;RSQ=0.9991;ERATE=0.0003;THETA=0.0003;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 145534334 . TA T 203 PASS INDEL;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6856;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145534447 . ACTC A 1998 PASS INDEL;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0172;AVGPOST=0.9977;RSQ=0.9458;ERATE=0.0004;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 145534533 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7273;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145534534 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.559;LDAF=0.0032;AVGPOST=0.9970;RSQ=0.5949;ERATE=0.0010;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145534660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.848;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8331;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145534760 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.8945;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145534793 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9201;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145534872 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145534914 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145535055 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145535083 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.7890;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145535093 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0028;AVGPOST=1.0000;RSQ=0.9921;ERATE=0.0004;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145535192 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145535247 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.8107;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145535335 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5274;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145535611 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.6042;AVGPOST=0.9999;RSQ=0.9998;ERATE=0.0003;THETA=0.0004;AC=1320;AN=2184 GT:DS:GL:BD 0.60439563 1 1 145535639 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0110;AVGPOST=0.9999;RSQ=0.9963;ERATE=0.0004;THETA=0.0002;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 145535731 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8148;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145535772 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145535793 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145535814 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0224;AVGPOST=1.0000;RSQ=0.9991;ERATE=0.0003;THETA=0.0004;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 145535871 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145535878 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145535884 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0028;AVGPOST=1.0000;RSQ=0.9921;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145535921 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.6042;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1320;AN=2184 GT:DS:GL:BD 0.60439563 1 1 145536012 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0046;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0008;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145536042 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8499;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145536082 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1271;AVGPOST=1.0000;RSQ=0.9998;ERATE=0.0003;THETA=0.0006;AC=278;AN=2184 GT:DS:GL:BD 0.12728938 0 1 145536197 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145536428 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0226;AVGPOST=0.9993;RSQ=0.9861;ERATE=0.0004;THETA=0.0004;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 145536582 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.584;LDAF=0.0082;AVGPOST=0.9958;RSQ=0.7769;ERATE=0.0011;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 145536636 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.557;LDAF=0.0028;AVGPOST=0.9953;RSQ=0.3027;ERATE=0.0007;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145536691 . AAAAT A 252 PASS INDEL;BAVGPOST=0.997;BRSQ=0.804;LDAF=0.0120;AVGPOST=0.9875;RSQ=0.6092;ERATE=0.0014;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 145536716 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9205;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145536872 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9543;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145536911 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145537131 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145537193 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145537252 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.6136;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145537255 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145537513 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145537779 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145537869 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145538048 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145538079 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145538112 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145538139 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1111;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=243;AN=2184 GT:DS:GL:BD 0.11126374 0 1 145538468 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145538514 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145538664 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.6024;AVGPOST=0.9999;RSQ=0.9997;ERATE=0.0003;THETA=0.0004;AC=1316;AN=2184 GT:DS:GL:BD 0.60256410 1 1 145538716 . TCA T 324 PASS INDEL;BAVGPOST=0.996;BRSQ=0.774;LDAF=0.0057;AVGPOST=0.9976;RSQ=0.8356;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145538781 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145538871 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0183;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 145539046 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145539171 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9571;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145539258 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=1.0000;RSQ=0.9968;ERATE=0.0003;THETA=0.0009;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 145539381 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145539396 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145539461 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0091;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145539659 . GTCTC G 861 PASS INDEL;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0064;AVGPOST=0.9991;RSQ=0.9396;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145539791 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145539816 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0562;AVGPOST=1.0000;RSQ=0.9996;ERATE=0.0003;THETA=0.0003;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 145539823 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145539892 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1271;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=278;AN=2184 GT:DS:GL:BD 0.12728938 0 1 145539910 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145539976 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145540038 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145540055 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1280;AVGPOST=0.9982;RSQ=0.9949;ERATE=0.0004;THETA=0.0006;AC=279;AN=2184 GT:DS:GL:BD 0.12774725 0 1 145540212 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145540252 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0224;AVGPOST=1.0000;RSQ=0.9991;ERATE=0.0003;THETA=0.0003;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 145540331 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145540392 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1835;AVGPOST=0.9996;RSQ=0.9989;ERATE=0.0004;THETA=0.0004;AC=401;AN=2184 GT:DS:GL:BD 0.18360806 0 1 145540404 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0224;AVGPOST=0.9999;RSQ=0.9982;ERATE=0.0003;THETA=0.0005;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 145540485 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0317;AVGPOST=0.9996;RSQ=0.9952;ERATE=0.0003;THETA=0.0005;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 145540511 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5646;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145540540 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145540603 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145540674 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0316;AVGPOST=0.9990;RSQ=0.9881;ERATE=0.0004;THETA=0.0002;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 145540675 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.701;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4793;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145540687 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.922;LDAF=0.0794;AVGPOST=0.9940;RSQ=0.9686;ERATE=0.0008;THETA=0.0005;AC=171;AN=2184 GT:DS:GL:BD 0.07829671 0 1 145540810 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.966;LDAF=0.0228;AVGPOST=0.9989;RSQ=0.9783;ERATE=0.0005;THETA=0.0004;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 145540816 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.925;LDAF=0.0227;AVGPOST=0.9953;RSQ=0.9317;ERATE=0.0004;THETA=0.0005;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 145540872 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.7987;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145540998 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0126;AVGPOST=0.9967;RSQ=0.9091;ERATE=0.0004;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 145541002 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145541037 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7165;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145541167 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9436;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145541364 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145541460 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0279;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 145541479 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0008;AVGPOST=0.9998;RSQ=0.8812;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145541488 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145541551 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145541595 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 145541603 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 145541720 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145541727 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145541741 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145541806 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145541882 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145541904 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145541937 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145541942 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145541956 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145541975 . AT A 7 PASS INDEL;BAVGPOST=0.998;BRSQ=0.710;LDAF=0.0039;AVGPOST=0.9956;RSQ=0.5448;ERATE=0.0007;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145541982 . CAG C 37 PASS INDEL;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0029;AVGPOST=0.9976;RSQ=0.6275;ERATE=0.0007;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145542177 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145542242 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 145542255 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0037;AVGPOST=1.0000;RSQ=0.9941;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145542273 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145542281 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1271;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=278;AN=2184 GT:DS:GL:BD 0.12728938 0 1 145542516 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9944;ERATE=0.0003;THETA=0.0011;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 145542520 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0225;AVGPOST=0.9999;RSQ=0.9973;ERATE=0.0003;THETA=0.0005;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 145542587 . A AT 76 PASS INDEL;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6231;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145542659 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0224;AVGPOST=0.9999;RSQ=0.9982;ERATE=0.0003;THETA=0.0004;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 145542671 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0219;AVGPOST=0.9997;RSQ=0.9935;ERATE=0.0004;THETA=0.0008;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 145542720 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0066;AVGPOST=0.9996;RSQ=0.9711;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145542878 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0007;AVGPOST=0.9992;RSQ=0.5462;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145543126 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6049;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145543154 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145543380 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9244;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145543545 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.988;LDAF=0.0884;AVGPOST=0.9978;RSQ=0.9891;ERATE=0.0004;THETA=0.0003;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 145543569 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145543612 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.593;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5080;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145543634 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7905;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145543709 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0238;AVGPOST=0.9973;RSQ=0.9512;ERATE=0.0004;THETA=0.0003;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 145543856 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5338;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145543917 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0289;AVGPOST=0.9998;RSQ=0.9971;ERATE=0.0004;THETA=0.0003;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 145543924 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7787;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145543949 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0292;AVGPOST=0.9991;RSQ=0.9872;ERATE=0.0004;THETA=0.0003;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 145544067 . G GTA 567 PASS INDEL;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0022;AVGPOST=0.9973;RSQ=0.5531;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145544093 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0410;AVGPOST=0.9992;RSQ=0.9928;ERATE=0.0004;THETA=0.0006;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 145544106 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0289;AVGPOST=0.9999;RSQ=0.9978;ERATE=0.0003;THETA=0.0004;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 145544301 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2165;AVGPOST=0.9953;RSQ=0.9889;ERATE=0.0005;THETA=0.0004;AC=469;AN=2184 GT:DS:GL:BD 0.21474358 0 1 145544348 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.720;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7211;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145544652 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.693;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4226;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145544734 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.1275;AVGPOST=0.9989;RSQ=0.9956;ERATE=0.0004;THETA=0.0005;AC=279;AN=2184 GT:DS:GL:BD 0.12774725 0 1 145544849 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0400;AVGPOST=0.9979;RSQ=0.9788;ERATE=0.0012;THETA=0.0003;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 145544894 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0289;AVGPOST=0.9999;RSQ=0.9978;ERATE=0.0004;THETA=0.0003;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 145544996 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8316;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145545030 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0160;AVGPOST=0.9999;RSQ=0.9974;ERATE=0.0003;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 145545038 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7263;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145545065 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0077;AVGPOST=0.9991;RSQ=0.9513;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145545225 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0220;AVGPOST=0.9979;RSQ=0.9641;ERATE=0.0004;THETA=0.0006;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 145545257 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0235;AVGPOST=0.9982;RSQ=0.9727;ERATE=0.0005;THETA=0.0003;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 145545308 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.809;LDAF=0.0042;AVGPOST=0.9988;RSQ=0.8943;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145545357 . C CATTACATAT 5321 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0102;AVGPOST=0.9995;RSQ=0.9786;ERATE=0.0004;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145545396 . TTG T 926 PASS INDEL;BAVGPOST=0.996;BRSQ=0.714;LDAF=0.0123;AVGPOST=0.9925;RSQ=0.7714;ERATE=0.0004;THETA=0.0002;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145545459 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0028;AVGPOST=0.9980;RSQ=0.7648;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145545468 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0229;AVGPOST=0.9989;RSQ=0.9800;ERATE=0.0005;THETA=0.0003;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 145545479 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0111;AVGPOST=0.9994;RSQ=0.9747;ERATE=0.0004;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 145545501 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.758;LDAF=0.0038;AVGPOST=0.9977;RSQ=0.7469;ERATE=0.0006;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145545583 . TTAA T 2438 PASS INDEL;BAVGPOST=0.993;BRSQ=0.878;LDAF=0.0287;AVGPOST=0.9988;RSQ=0.9813;ERATE=0.0004;THETA=0.0005;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 145545591 . TTTTA T 1140 PASS INDEL;BAVGPOST=0.993;BRSQ=0.850;LDAF=0.0210;AVGPOST=0.9951;RSQ=0.9112;ERATE=0.0005;THETA=0.0005;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 145545603 . A AT 52 PASS INDEL;BAVGPOST=0.994;BRSQ=0.516;LDAF=0.0097;AVGPOST=0.9893;RSQ=0.5966;ERATE=0.0014;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 145545630 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6107;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145545785 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0039;AVGPOST=0.9986;RSQ=0.8524;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145545966 . A AT 1447 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=0.9996;RSQ=0.9831;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145546003 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8884;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145546080 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145546305 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5571;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145546354 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0228;AVGPOST=0.9993;RSQ=0.9863;ERATE=0.0005;THETA=0.0005;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 145546384 . ATC A 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4772;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145546392 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.728;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6141;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145546394 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0225;AVGPOST=0.9996;RSQ=0.9919;ERATE=0.0004;THETA=0.0003;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 145546394 . C CA 50 PASS INDEL;BAVGPOST=0.992;BRSQ=0.587;LDAF=0.0210;AVGPOST=0.9739;RSQ=0.5044;ERATE=0.0072;THETA=0.0007;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 145546519 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7749;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145546533 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0077;AVGPOST=0.9978;RSQ=0.8818;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 145547007 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0226;AVGPOST=0.9994;RSQ=0.9884;ERATE=0.0004;THETA=0.0006;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 145547024 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1136;AVGPOST=0.9967;RSQ=0.9876;ERATE=0.0004;THETA=0.0003;AC=248;AN=2184 GT:DS:GL:BD 0.11355311 0 1 145547041 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0448;AVGPOST=0.9983;RSQ=0.9856;ERATE=0.0004;THETA=0.0003;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 145547089 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9667;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145547104 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0028;AVGPOST=0.9981;RSQ=0.7461;ERATE=0.0007;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145547197 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6671;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145547236 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0227;AVGPOST=0.9993;RSQ=0.9870;ERATE=0.0005;THETA=0.0005;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 145547249 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5827;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145547361 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4017;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145547416 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6307;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145547656 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.1844;AVGPOST=0.9985;RSQ=0.9958;ERATE=0.0005;THETA=0.0003;AC=404;AN=2184 GT:DS:GL:BD 0.18498169 0 1 145547759 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0047;AVGPOST=0.9963;RSQ=0.7442;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145547796 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0056;AVGPOST=0.9997;RSQ=0.9766;ERATE=0.0004;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145547963 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.985;LDAF=0.4149;AVGPOST=0.9908;RSQ=0.9849;ERATE=0.0016;THETA=0.0003;AC=907;AN=2184 GT:DS:GL:BD 0.41529304 0 1 145548016 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.911;LDAF=0.0273;AVGPOST=0.9965;RSQ=0.9470;ERATE=0.0004;THETA=0.0013;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 145548069 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8453;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145548074 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0043;AVGPOST=0.9959;RSQ=0.6336;ERATE=0.0005;THETA=0.0027;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145548166 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0062;AVGPOST=0.9986;RSQ=0.9244;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 145548173 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5169;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145548287 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.688;LDAF=0.0023;AVGPOST=0.9966;RSQ=0.4337;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145548321 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9277;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145548327 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.6537;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145548335 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0347;AVGPOST=0.9969;RSQ=0.9699;ERATE=0.0004;THETA=0.0005;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 145548382 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.939;LDAF=0.0222;AVGPOST=0.9983;RSQ=0.9663;ERATE=0.0004;THETA=0.0006;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 145548537 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0074;AVGPOST=0.9985;RSQ=0.9193;ERATE=0.0004;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 145548709 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8075;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145548852 . GC G 1426 PASS INDEL;BAVGPOST=0.997;BRSQ=0.961;LDAF=0.0467;AVGPOST=0.9789;RSQ=0.8399;ERATE=0.0009;THETA=0.0003;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 145548864 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.987;LDAF=0.1334;AVGPOST=0.9915;RSQ=0.9712;ERATE=0.0010;THETA=0.0005;AC=290;AN=2184 GT:DS:GL:BD 0.13278389 0 1 145548981 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0193;AVGPOST=0.9900;RSQ=0.7828;ERATE=0.0007;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 145549313 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145549380 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145549418 . T TTAGTCC 460 PASS INDEL;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0030;AVGPOST=0.9993;RSQ=0.8930;ERATE=0.0005;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145549662 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0215;AVGPOST=0.9999;RSQ=0.9981;ERATE=0.0004;THETA=0.0002;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 145549787 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7747;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145549793 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0325;AVGPOST=0.9998;RSQ=0.9975;ERATE=0.0004;THETA=0.0004;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 145549849 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145549978 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0071;AVGPOST=0.9995;RSQ=0.9761;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 145550034 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145550039 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.8106;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145550044 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6151;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145550307 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0329;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 145550439 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145550460 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8375;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145550481 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8622;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145550608 . TG T 45 PASS INDEL;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5749;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145550619 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6094;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145550632 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0472;AVGPOST=0.9997;RSQ=0.9974;ERATE=0.0004;THETA=0.0003;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 145550667 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9073;ERATE=0.0013;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145550795 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0097;AVGPOST=0.9989;RSQ=0.9509;ERATE=0.0004;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145550814 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9771;ERATE=0.0003;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145550831 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6025;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145550922 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2571;AVGPOST=0.9978;RSQ=0.9956;ERATE=0.0005;THETA=0.0002;AC=561;AN=2184 GT:DS:GL:BD 0.25686812 0 1 145550982 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7357;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145551016 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0326;AVGPOST=0.9996;RSQ=0.9944;ERATE=0.0004;THETA=0.0004;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 145551039 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6925;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145551091 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8540;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145551126 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0160;AVGPOST=1.0000;RSQ=0.9987;ERATE=0.0003;THETA=0.0006;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 145551248 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0471;AVGPOST=0.9997;RSQ=0.9975;ERATE=0.0003;THETA=0.0005;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 145551313 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145551476 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0038;AVGPOST=0.9977;RSQ=0.7945;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145551477 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0130;AVGPOST=0.9996;RSQ=0.9846;ERATE=0.0004;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 145551515 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2603;AVGPOST=0.9979;RSQ=0.9956;ERATE=0.0004;THETA=0.0004;AC=567;AN=2184 GT:DS:GL:BD 0.25961539 0 1 145551700 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0327;AVGPOST=0.9993;RSQ=0.9920;ERATE=0.0003;THETA=0.0003;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 145551712 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6380;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145551828 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.988;LDAF=0.1362;AVGPOST=0.9944;RSQ=0.9819;ERATE=0.0004;THETA=0.0004;AC=295;AN=2184 GT:DS:GL:BD 0.13507326 0 1 145551829 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0353;AVGPOST=0.9967;RSQ=0.9673;ERATE=0.0007;THETA=0.0004;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 145551906 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.863;LDAF=0.0062;AVGPOST=0.9929;RSQ=0.5746;ERATE=0.0006;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145551921 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.918;LDAF=0.0068;AVGPOST=0.9965;RSQ=0.8113;ERATE=0.0006;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145552018 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5953;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145552058 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0131;AVGPOST=0.9991;RSQ=0.9765;ERATE=0.0004;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 145552125 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.1431;AVGPOST=0.9973;RSQ=0.9915;ERATE=0.0004;THETA=0.0003;AC=314;AN=2184 GT:DS:GL:BD 0.14377290 0 1 145552137 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0072;AVGPOST=0.9993;RSQ=0.9557;ERATE=0.0003;THETA=0.0011;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 145552271 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7428;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145552395 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5882;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145552406 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145552491 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0018;AVGPOST=0.9995;RSQ=0.8858;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145552510 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0162;AVGPOST=0.9994;RSQ=0.9819;ERATE=0.0005;THETA=0.0015;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 145552579 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0040;AVGPOST=0.9974;RSQ=0.7232;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145552740 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.809;LDAF=0.0037;AVGPOST=0.9970;RSQ=0.7129;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145552898 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1342;AVGPOST=0.9925;RSQ=0.9722;ERATE=0.0012;THETA=0.0005;AC=289;AN=2184 GT:DS:GL:BD 0.13232601 0 1 145552973 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0110;AVGPOST=0.9921;RSQ=0.7157;ERATE=0.0008;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145553273 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8864;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145553303 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.6013;AVGPOST=0.9958;RSQ=0.9941;ERATE=0.0004;THETA=0.0005;AC=1314;AN=2184 GT:DS:GL:BD 0.60164833 1 1 145553311 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145553367 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145553425 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145553462 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8236;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145553623 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0585;AVGPOST=1.0000;RSQ=0.9997;ERATE=0.0003;THETA=0.0006;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 145553645 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9524;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145554024 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.716;LDAF=0.0037;AVGPOST=0.9959;RSQ=0.5262;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145554062 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0098;AVGPOST=0.9983;RSQ=0.9284;ERATE=0.0004;THETA=0.0014;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145554103 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0582;AVGPOST=0.9992;RSQ=0.9951;ERATE=0.0003;THETA=0.0012;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 145554108 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145554111 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0219;AVGPOST=0.9984;RSQ=0.9733;ERATE=0.0004;THETA=0.0009;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 145554120 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0581;AVGPOST=0.9994;RSQ=0.9957;ERATE=0.0003;THETA=0.0003;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 145554162 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145554213 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1362;AVGPOST=0.9970;RSQ=0.9897;ERATE=0.0005;THETA=0.0004;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 145554221 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6413;ERATE=0.0004;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145554225 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6427;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145554354 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.855;LDAF=0.0038;AVGPOST=0.9988;RSQ=0.8689;ERATE=0.0005;THETA=0.0019;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145554450 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.985;LDAF=0.2590;AVGPOST=0.9930;RSQ=0.9877;ERATE=0.0005;THETA=0.0065;AC=562;AN=2184 GT:DS:GL:BD 0.25732601 0 1 145554597 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7692;ERATE=0.0003;THETA=0.0067;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145554598 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6495;ERATE=0.0004;THETA=0.0043;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145554675 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.893;LDAF=0.0027;AVGPOST=0.9990;RSQ=0.8475;ERATE=0.0004;THETA=0.0080;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145554841 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7425;ERATE=0.0003;THETA=0.0052;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145554942 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0208;AVGPOST=0.9950;RSQ=0.9150;ERATE=0.0004;THETA=0.0095;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 145555016 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0051;AVGPOST=0.9984;RSQ=0.8658;ERATE=0.0004;THETA=0.0035;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145555087 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.982;LDAF=0.2374;AVGPOST=0.9880;RSQ=0.9749;ERATE=0.0031;THETA=0.0041;AC=515;AN=2184 GT:DS:GL:BD 0.23580585 0 1 145555160 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0164;AVGPOST=0.9990;RSQ=0.9758;ERATE=0.0004;THETA=0.0232;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 145555190 rs5777572 CTCGG C 56757 PASS INDEL;BAVGPOST=0.958;BRSQ=0.937;LDAF=0.4506;AVGPOST=0.9631;RSQ=0.9475;ERATE=0.0008;THETA=0.0085;AC=982;AN=2184 GT:DS:GL:BD 0.44963369 0 1 145555195 rs59104596 TCG T 6285 PASS INDEL;BAVGPOST=0.928;BRSQ=0.872;LDAF=0.4079;AVGPOST=0.9299;RSQ=0.8914;ERATE=0.0094;THETA=0.0250;AC=904;AN=2184 GT:DS:GL:BD 0.41391942 0 1 145555282 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7393;ERATE=0.0003;THETA=0.0143;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145555380 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0240;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145555653 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.4413;AVGPOST=0.9981;RSQ=0.9973;ERATE=0.0030;THETA=0.0069;AC=962;AN=2184 GT:DS:GL:BD 0.44047618 0 1 145555669 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8498;ERATE=0.0003;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145555699 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9717;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145555707 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0079;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145555746 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0006;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145555757 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0105;AVGPOST=1.0000;RSQ=0.9979;ERATE=0.0005;THETA=0.0071;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 145555811 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=1.0000;RSQ=0.9972;ERATE=0.0004;THETA=0.0027;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145555830 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145555887 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145555894 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145555901 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0064;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0013;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145556098 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145556145 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9500;ERATE=0.0003;THETA=0.0014;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145556173 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145556308 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145556517 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0001;AVGPOST=0.9998;RSQ=0.1248;ERATE=0.0003;THETA=0.0011;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 145556571 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0038;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145556583 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0052;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145556691 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145556701 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8749;ERATE=0.0006;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145556715 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145556716 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145556845 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8653;ERATE=0.0004;THETA=0.0061;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145556986 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2169;AVGPOST=0.9990;RSQ=0.9977;ERATE=0.0004;THETA=0.0006;AC=472;AN=2184 GT:DS:GL:BD 0.21611722 0 1 145557169 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145557256 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145557259 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5881;ERATE=0.0005;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145557292 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145557384 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.950;LDAF=0.0176;AVGPOST=0.9984;RSQ=0.9673;ERATE=0.0003;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 145557429 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0065;AVGPOST=0.9997;RSQ=0.9799;ERATE=0.0018;THETA=0.0024;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145557453 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8890;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145557535 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9888;ERATE=0.0004;THETA=0.0010;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145557554 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5394;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145557589 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0005;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145557761 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6832;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145557783 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.684;LDAF=0.0034;AVGPOST=0.9973;RSQ=0.6543;ERATE=0.0006;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145557808 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.950;BRSQ=0.814;LDAF=0.8672;AVGPOST=0.9188;RSQ=0.7609;ERATE=0.0163;THETA=0.0027;AC=1947;AN=2184 GT:DS:GL:BD 0.89148355 1 1 145557862 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7128;ERATE=0.0004;THETA=0.0067;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145557892 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0020;AVGPOST=0.9993;RSQ=0.8505;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145557946 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145557950 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0067;AVGPOST=0.9994;RSQ=0.9697;ERATE=0.0003;THETA=0.0009;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145558025 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145558185 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0063;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 145558233 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0039;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145558245 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145558265 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8498;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145558345 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145558368 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145558423 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0009;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 145558524 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9517;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145558565 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.9592;AVGPOST=0.9998;RSQ=0.9978;ERATE=0.0039;THETA=0.0066;AC=2095;AN=2184 GT:DS:GL:BD 0.95924908 1 1 145558593 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0046;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0068;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145558737 . A AT 34 PASS INDEL;BAVGPOST=0.991;BRSQ=0.497;LDAF=0.0195;AVGPOST=0.9736;RSQ=0.4373;ERATE=0.0061;THETA=0.0056;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 145558824 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3016;AVGPOST=0.9997;RSQ=0.9994;ERATE=0.0045;THETA=0.0008;AC=657;AN=2184 GT:DS:GL:BD 0.30082417 0 1 145558857 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145558876 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145558909 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145558910 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145558911 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145558942 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145559010 . CGT C 398 PASS INDEL;BAVGPOST=0.974;BRSQ=0.651;LDAF=0.0548;AVGPOST=0.9463;RSQ=0.5737;ERATE=0.0257;THETA=0.0034;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 145559075 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9927;ERATE=0.0003;THETA=0.0056;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 145559175 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2474;AVGPOST=0.9992;RSQ=0.9982;ERATE=0.0004;THETA=0.0006;AC=538;AN=2184 GT:DS:GL:BD 0.24633700 0 1 145559287 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5718;ERATE=0.0004;THETA=0.0035;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145559372 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.976;LDAF=0.6217;AVGPOST=0.9812;RSQ=0.9731;ERATE=0.0016;THETA=0.0008;AC=1368;AN=2184 GT:DS:GL:BD 0.62637365 1 1 145559439 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.970;LDAF=0.6626;AVGPOST=0.9587;RSQ=0.9367;ERATE=0.0037;THETA=0.0003;AC=1458;AN=2184 GT:DS:GL:BD 0.66758239 1 1 145559454 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.499;LDAF=0.0029;AVGPOST=0.9952;RSQ=0.3502;ERATE=0.0007;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145559468 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0029;AVGPOST=0.9977;RSQ=0.6863;ERATE=0.0005;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145559565 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145559583 . C CT 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4376;ERATE=0.0005;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145559637 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145559656 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.982;LDAF=0.6221;AVGPOST=0.9827;RSQ=0.9743;ERATE=0.0048;THETA=0.0006;AC=1364;AN=2184 GT:DS:GL:BD 0.62454212 1 1 145559658 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.981;LDAF=0.0457;AVGPOST=0.9975;RSQ=0.9820;ERATE=0.0005;THETA=0.0004;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 145559734 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.684;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6770;ERATE=0.0007;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145559774 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.953;LDAF=0.0248;AVGPOST=0.9918;RSQ=0.8715;ERATE=0.0004;THETA=0.0011;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 145559783 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3830;ERATE=0.0004;THETA=0.0085;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145559810 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.974;LDAF=0.0253;AVGPOST=0.9963;RSQ=0.9506;ERATE=0.0006;THETA=0.0009;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 145559833 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0041;AVGPOST=0.9991;RSQ=0.9084;ERATE=0.0004;THETA=0.0045;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145559849 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.886;LDAF=0.0054;AVGPOST=0.9970;RSQ=0.7787;ERATE=0.0008;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145559861 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.979;LDAF=0.0249;AVGPOST=0.9979;RSQ=0.9732;ERATE=0.0003;THETA=0.0005;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 145560094 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0037;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145560101 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145560109 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145560138 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145560139 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145560175 . GATGCTCTGCACT G 238 PASS INDEL;BAVGPOST=1.000;BRSQ=0.700;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4912;ERATE=0.0004;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145560284 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0131;AVGPOST=0.9995;RSQ=0.9864;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 145560476 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.993;LDAF=0.5517;AVGPOST=0.9924;RSQ=0.9900;ERATE=0.0040;THETA=0.0021;AC=1211;AN=2184 GT:DS:GL:BD 0.55448717 1 1 145560818 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145560827 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145560842 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145560893 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145560918 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0152;AVGPOST=0.9999;RSQ=0.9957;ERATE=0.0003;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 145560939 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145560982 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145561008 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0546;AVGPOST=0.9995;RSQ=0.9959;ERATE=0.0004;THETA=0.0043;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 145561110 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0050;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0019;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145561116 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0524;AVGPOST=0.9993;RSQ=0.9943;ERATE=0.0004;THETA=0.0005;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 145561169 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0247;AVGPOST=1.0000;RSQ=0.9992;ERATE=0.0003;THETA=0.0007;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 145561179 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0041;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145561190 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9682;ERATE=0.0007;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145561192 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145561196 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145561218 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.7542;ERATE=0.0008;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145561334 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145561335 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0128;AVGPOST=1.0000;RSQ=0.9983;ERATE=0.0003;THETA=0.0009;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 145561341 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145561489 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8407;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145561576 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145561594 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5274;AVGPOST=0.9998;RSQ=0.9996;ERATE=0.0004;THETA=0.0005;AC=1154;AN=2184 GT:DS:GL:BD 0.52838826 1 1 145561608 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145561615 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0020;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 145561702 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145561730 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9571;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145561822 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145561841 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145561940 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145561980 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8665;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145562029 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145562073 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145562087 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1445;AVGPOST=0.9995;RSQ=0.9987;ERATE=0.0004;THETA=0.0005;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 145562108 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0261;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 145562149 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9647;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145562293 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3870;AVGPOST=0.9996;RSQ=0.9995;ERATE=0.0003;THETA=0.0006;AC=843;AN=2184 GT:DS:GL:BD 0.38598901 0 1 145562335 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145562503 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145562532 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0078;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145562751 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145562793 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145562862 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0032;AVGPOST=1.0000;RSQ=0.9932;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145562881 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5610;AVGPOST=0.9995;RSQ=0.9993;ERATE=0.0003;THETA=0.0009;AC=1227;AN=2184 GT:DS:GL:BD 0.56181318 1 1 145562938 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145562990 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145563019 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145563071 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0041;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0005;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145563115 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145563287 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145563340 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.845;LDAF=0.0063;AVGPOST=0.9963;RSQ=0.7600;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145563516 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5529;AVGPOST=0.9979;RSQ=0.9969;ERATE=0.0004;THETA=0.0002;AC=1209;AN=2184 GT:DS:GL:BD 0.55357140 1 1 145563671 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0027;AVGPOST=0.9979;RSQ=0.6696;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145563844 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.989;LDAF=0.5390;AVGPOST=0.9889;RSQ=0.9836;ERATE=0.0019;THETA=0.0003;AC=1182;AN=2184 GT:DS:GL:BD 0.54120880 1 1 145563848 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.3783;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145563866 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0032;AVGPOST=0.9982;RSQ=0.7498;ERATE=0.0006;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145563892 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.612;LDAF=0.0029;AVGPOST=0.9952;RSQ=0.3774;ERATE=0.0008;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145563960 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.955;LDAF=0.5188;AVGPOST=0.9629;RSQ=0.9465;ERATE=0.0086;THETA=0.0003;AC=1148;AN=2184 GT:DS:GL:BD 0.52564102 1 1 145563985 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.731;LDAF=0.0038;AVGPOST=0.9978;RSQ=0.7933;ERATE=0.0006;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145564000 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3842;AVGPOST=0.9981;RSQ=0.9974;ERATE=0.0004;THETA=0.0004;AC=837;AN=2184 GT:DS:GL:BD 0.38324177 0 1 145564057 . ATAT A 146 PASS INDEL;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5767;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145564159 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.9038;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145564203 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0035;AVGPOST=0.9974;RSQ=0.7378;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145564215 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145564227 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.5396;AVGPOST=0.9906;RSQ=0.9864;ERATE=0.0017;THETA=0.0005;AC=1181;AN=2184 GT:DS:GL:BD 0.54075092 1 1 145564331 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.7880;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145564358 rs71648231 TTA T 55465 PASS INDEL;BAVGPOST=0.990;BRSQ=0.939;LDAF=0.9172;AVGPOST=0.9643;RSQ=0.8410;ERATE=0.0075;THETA=0.0003;AC=2025;AN=2184 GT:DS:GL:BD 0.92719781 1 1 145564518 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5541;AVGPOST=0.9981;RSQ=0.9971;ERATE=0.0006;THETA=0.0003;AC=1213;AN=2184 GT:DS:GL:BD 0.55540293 1 1 145564713 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.987;LDAF=0.3827;AVGPOST=0.9892;RSQ=0.9843;ERATE=0.0016;THETA=0.0010;AC=831;AN=2184 GT:DS:GL:BD 0.38049451 0 1 145564749 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.917;LDAF=0.9244;AVGPOST=0.9737;RSQ=0.8704;ERATE=0.0021;THETA=0.0006;AC=2041;AN=2184 GT:DS:GL:BD 0.93452382 1 1 145564801 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0033;AVGPOST=0.9988;RSQ=0.8330;ERATE=0.0005;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145564831 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.964;LDAF=0.5277;AVGPOST=0.9704;RSQ=0.9580;ERATE=0.0028;THETA=0.0005;AC=1167;AN=2184 GT:DS:GL:BD 0.53434068 1 1 145564840 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0050;AVGPOST=0.9967;RSQ=0.7392;ERATE=0.0005;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145564866 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5437;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145564899 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.915;LDAF=0.0195;AVGPOST=0.9951;RSQ=0.8961;ERATE=0.0004;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 145564929 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0141;AVGPOST=0.9959;RSQ=0.8759;ERATE=0.0010;THETA=0.0002;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 145565193 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.972;LDAF=0.0277;AVGPOST=0.9985;RSQ=0.9778;ERATE=0.0003;THETA=0.0002;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 145565216 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0039;AVGPOST=0.9993;RSQ=0.9279;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145565248 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.960;LDAF=0.0137;AVGPOST=0.9999;RSQ=0.9956;ERATE=0.0003;THETA=0.0008;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 145565270 . TA T 75 PASS INDEL;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6372;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145565294 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0041;AVGPOST=0.9993;RSQ=0.9299;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145565301 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5089;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145565321 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0127;AVGPOST=0.9993;RSQ=0.9755;ERATE=0.0006;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 145565335 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9415;AVGPOST=0.9967;RSQ=0.9816;ERATE=0.0006;THETA=0.0004;AC=2057;AN=2184 GT:DS:GL:BD 0.94184983 1 1 145565380 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0064;AVGPOST=0.9980;RSQ=0.8778;ERATE=0.0004;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 145565462 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5405;AVGPOST=0.9996;RSQ=0.9994;ERATE=0.0003;THETA=0.0004;AC=1183;AN=2184 GT:DS:GL:BD 0.54166669 1 1 145565576 rs34948025 G GA 45679 PASS INDEL;BAVGPOST=0.993;BRSQ=0.992;LDAF=0.5487;AVGPOST=0.9953;RSQ=0.9928;ERATE=0.0006;THETA=0.0005;AC=1204;AN=2184 GT:DS:GL:BD 0.55128205 1 1 145565612 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0034;AVGPOST=0.9950;RSQ=0.5187;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145565620 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.718;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5951;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145565678 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.615;LDAF=0.0049;AVGPOST=0.9928;RSQ=0.4293;ERATE=0.0010;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145565682 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0040;AVGPOST=0.9974;RSQ=0.7285;ERATE=0.0007;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145565702 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0066;AVGPOST=0.9946;RSQ=0.6903;ERATE=0.0012;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145565715 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.711;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5072;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145565729 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.787;LDAF=0.0083;AVGPOST=0.9966;RSQ=0.8308;ERATE=0.0005;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 145565733 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.8026;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145565758 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0034;AVGPOST=0.9957;RSQ=0.5265;ERATE=0.0007;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145565803 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0121;AVGPOST=0.9987;RSQ=0.9557;ERATE=0.0004;THETA=0.0002;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 145565818 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3789;AVGPOST=0.9986;RSQ=0.9976;ERATE=0.0006;THETA=0.0003;AC=825;AN=2184 GT:DS:GL:BD 0.37774727 0 1 145565896 . AC A 628 PASS INDEL;BAVGPOST=0.992;BRSQ=0.743;LDAF=0.0155;AVGPOST=0.9918;RSQ=0.8025;ERATE=0.0006;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 145565969 . TA T 341 PASS INDEL;BAVGPOST=0.998;BRSQ=0.894;LDAF=0.0087;AVGPOST=0.9969;RSQ=0.8650;ERATE=0.0005;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 145565970 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.697;LDAF=0.0137;AVGPOST=0.9875;RSQ=0.6417;ERATE=0.0018;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 145566004 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.991;LDAF=0.5404;AVGPOST=0.9971;RSQ=0.9952;ERATE=0.0010;THETA=0.0002;AC=1182;AN=2184 GT:DS:GL:BD 0.54120880 1 1 145566022 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.5387;AVGPOST=0.9925;RSQ=0.9891;ERATE=0.0011;THETA=0.0003;AC=1183;AN=2184 GT:DS:GL:BD 0.54166669 1 1 145566355 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5513;AVGPOST=0.9983;RSQ=0.9971;ERATE=0.0005;THETA=0.0004;AC=1208;AN=2184 GT:DS:GL:BD 0.55311358 1 1 145566387 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145566443 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9505;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145566530 . AAC A 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6008;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145566535 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5406;AVGPOST=0.9998;RSQ=0.9996;ERATE=0.0004;THETA=0.0003;AC=1183;AN=2184 GT:DS:GL:BD 0.54166669 1 1 145566561 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145566608 . TAA T 512 PASS INDEL;BAVGPOST=0.998;BRSQ=0.806;LDAF=0.0031;AVGPOST=0.9975;RSQ=0.6411;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145566847 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145567008 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0152;AVGPOST=0.9999;RSQ=0.9960;ERATE=0.0003;THETA=0.0002;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 145567019 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 145567084 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0082;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 145567157 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145567257 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0114;AVGPOST=1.0000;RSQ=0.9982;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 145567310 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145567341 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145567343 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145567446 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3649;AVGPOST=0.9995;RSQ=0.9994;ERATE=0.0003;THETA=0.0003;AC=795;AN=2184 GT:DS:GL:BD 0.36401099 0 1 145567479 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145567527 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145567554 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0078;AVGPOST=0.9999;RSQ=0.9944;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145567701 . TG T 26 PASS INDEL;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145567750 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145567831 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145567889 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145568008 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0050;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145568151 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8665;ERATE=0.0008;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145568232 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9241;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145568352 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0033;AVGPOST=0.9994;RSQ=0.9191;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145568454 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0018;AVGPOST=0.9995;RSQ=0.8803;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145568573 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0025;AVGPOST=0.9989;RSQ=0.8447;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145568637 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3789;AVGPOST=0.9995;RSQ=0.9990;ERATE=0.0005;THETA=0.0003;AC=825;AN=2184 GT:DS:GL:BD 0.37774727 0 1 145568694 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.776;LDAF=0.0043;AVGPOST=0.9986;RSQ=0.8558;ERATE=0.0006;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145568801 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.853;LDAF=0.0031;AVGPOST=0.9974;RSQ=0.7085;ERATE=0.0007;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145568896 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6969;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145568933 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.717;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4762;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145568977 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5367;AVGPOST=0.9984;RSQ=0.9979;ERATE=0.0004;THETA=0.0005;AC=1174;AN=2184 GT:DS:GL:BD 0.53754580 1 1 145568993 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8084;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145569027 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5398;AVGPOST=0.9995;RSQ=0.9992;ERATE=0.0003;THETA=0.0004;AC=1181;AN=2184 GT:DS:GL:BD 0.54075092 1 1 145569132 . TTTTG T 217 PASS INDEL;BAVGPOST=0.994;BRSQ=0.685;LDAF=0.0154;AVGPOST=0.9802;RSQ=0.4752;ERATE=0.0048;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 145569239 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8093;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145569385 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0084;AVGPOST=0.9996;RSQ=0.9810;ERATE=0.0004;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 145569388 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.977;LDAF=0.5339;AVGPOST=0.9954;RSQ=0.9929;ERATE=0.0005;THETA=0.0004;AC=1171;AN=2184 GT:DS:GL:BD 0.53617215 1 1 145569396 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.978;LDAF=0.5354;AVGPOST=0.9960;RSQ=0.9936;ERATE=0.0005;THETA=0.0005;AC=1175;AN=2184 GT:DS:GL:BD 0.53800368 1 1 145569484 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0072;AVGPOST=0.9995;RSQ=0.9754;ERATE=0.0004;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 145569526 . CT C 757 PASS INDEL;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0068;AVGPOST=0.9989;RSQ=0.9253;ERATE=0.0004;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145569657 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.843;LDAF=0.0013;AVGPOST=0.9996;RSQ=0.8824;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145569691 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.6035;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145569693 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0136;AVGPOST=0.9974;RSQ=0.9306;ERATE=0.0004;THETA=0.0001;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 145569723 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0016;AVGPOST=0.9980;RSQ=0.5820;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145569724 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5373;AVGPOST=0.9986;RSQ=0.9979;ERATE=0.0005;THETA=0.0008;AC=1175;AN=2184 GT:DS:GL:BD 0.53800368 1 1 145569796 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0042;AVGPOST=0.9980;RSQ=0.8005;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145569843 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0165;AVGPOST=0.9960;RSQ=0.9054;ERATE=0.0005;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 145569925 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3805;AVGPOST=0.9963;RSQ=0.9945;ERATE=0.0007;THETA=0.0004;AC=828;AN=2184 GT:DS:GL:BD 0.37912089 0 1 145569967 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5361;AVGPOST=0.9957;RSQ=0.9936;ERATE=0.0004;THETA=0.0006;AC=1174;AN=2184 GT:DS:GL:BD 0.53754580 1 1 145570163 . T TA 3134 PASS INDEL;BAVGPOST=0.893;BRSQ=0.810;LDAF=0.3033;AVGPOST=0.9005;RSQ=0.8522;ERATE=0.0072;THETA=0.0006;AC=690;AN=2184 GT:DS:GL:BD 0.31593406 0 1 145570172 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.3605;AVGPOST=0.9918;RSQ=0.9879;ERATE=0.0014;THETA=0.0004;AC=787;AN=2184 GT:DS:GL:BD 0.36034799 0 1 145570211 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.688;LDAF=0.0022;AVGPOST=0.9979;RSQ=0.6228;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145570321 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0079;AVGPOST=0.9996;RSQ=0.9781;ERATE=0.0004;THETA=0.0010;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145570388 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145570627 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5351;AVGPOST=0.9980;RSQ=0.9969;ERATE=0.0005;THETA=0.0004;AC=1171;AN=2184 GT:DS:GL:BD 0.53617215 1 1 145570717 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.5347;AVGPOST=0.9971;RSQ=0.9960;ERATE=0.0005;THETA=0.0003;AC=1170;AN=2184 GT:DS:GL:BD 0.53571427 1 1 145570842 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0039;AVGPOST=0.9984;RSQ=0.8506;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145570904 . G GA 125 PASS INDEL;BAVGPOST=0.979;BRSQ=0.550;LDAF=0.0384;AVGPOST=0.9515;RSQ=0.4726;ERATE=0.0137;THETA=0.0003;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 145570970 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145571054 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8541;ERATE=0.0003;THETA=0.0030;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145571177 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0082;AVGPOST=0.9991;RSQ=0.9520;ERATE=0.0004;THETA=0.0029;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145571243 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0062;AVGPOST=0.9987;RSQ=0.9152;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 145571378 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145571398 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.9217;AVGPOST=0.9986;RSQ=0.9934;ERATE=0.0025;THETA=0.0005;AC=2014;AN=2184 GT:DS:GL:BD 0.92216116 1 1 145571399 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.443;LDAF=0.0046;AVGPOST=0.9939;RSQ=0.4671;ERATE=0.0018;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145571498 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0002;AVGPOST=0.9996;RSQ=0.1372;ERATE=0.0004;THETA=0.0026;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 145571532 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6978;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145571753 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6677;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145571763 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0054;AVGPOST=0.9992;RSQ=0.9363;ERATE=0.0004;THETA=0.0013;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145571890 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5764;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145571942 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9858;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145571967 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.9661;AVGPOST=0.9998;RSQ=0.9971;ERATE=0.0003;THETA=0.0009;AC=2110;AN=2184 GT:DS:GL:BD 0.96611720 1 1 145572143 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0025;AVGPOST=0.9966;RSQ=0.4599;ERATE=0.0008;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145572291 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.686;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.5556;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145572330 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.983;LDAF=0.1434;AVGPOST=0.9910;RSQ=0.9735;ERATE=0.0006;THETA=0.0003;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 145572660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.919;LDAF=0.0609;AVGPOST=0.9920;RSQ=0.9422;ERATE=0.0006;THETA=0.0005;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 145572686 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0073;AVGPOST=0.9957;RSQ=0.7651;ERATE=0.0008;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145572820 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.800;LDAF=0.0075;AVGPOST=0.9964;RSQ=0.8127;ERATE=0.0006;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 145573012 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0053;AVGPOST=0.9985;RSQ=0.8663;ERATE=0.0007;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145573081 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.883;LDAF=0.0104;AVGPOST=0.9963;RSQ=0.8542;ERATE=0.0008;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 145573182 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.683;LDAF=0.0023;AVGPOST=0.9964;RSQ=0.3034;ERATE=0.0007;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145573298 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.734;LDAF=0.0039;AVGPOST=0.9968;RSQ=0.6508;ERATE=0.0005;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145573427 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.931;LDAF=0.3665;AVGPOST=0.9516;RSQ=0.9302;ERATE=0.0044;THETA=0.0005;AC=804;AN=2184 GT:DS:GL:BD 0.36813188 0 1 145573536 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0188;AVGPOST=0.9966;RSQ=0.9198;ERATE=0.0007;THETA=0.0009;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 145573598 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.728;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6188;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145573718 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5611;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145573719 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6493;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145574047 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.8555;ERATE=0.0006;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145574069 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9670;ERATE=0.0004;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145574121 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0017;AVGPOST=0.9995;RSQ=0.8803;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145574273 . AT A 10308 PASS INDEL;BAVGPOST=0.983;BRSQ=0.970;LDAF=0.3786;AVGPOST=0.9773;RSQ=0.9661;ERATE=0.0020;THETA=0.0006;AC=830;AN=2184 GT:DS:GL:BD 0.38003662 0 1 145574274 rs35860513 TA T 48351 PASS INDEL;BAVGPOST=0.984;BRSQ=0.972;LDAF=0.3863;AVGPOST=0.9848;RSQ=0.9778;ERATE=0.0005;THETA=0.0005;AC=842;AN=2184 GT:DS:GL:BD 0.38553113 0 1 145574284 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.972;LDAF=0.0274;AVGPOST=0.9975;RSQ=0.9647;ERATE=0.0004;THETA=0.0008;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 145574318 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9812;ERATE=0.0003;THETA=0.0010;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145574400 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.635;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4410;ERATE=0.0006;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145574561 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5672;ERATE=0.0005;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145574636 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.794;LDAF=0.0045;AVGPOST=0.9978;RSQ=0.7804;ERATE=0.0004;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145574646 . T TA 583 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9539;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145574691 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145574692 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0093;AVGPOST=0.9996;RSQ=0.9824;ERATE=0.0003;THETA=0.0032;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145574871 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.8009;ERATE=0.0004;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145574879 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9635;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145574897 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0045;AVGPOST=0.9993;RSQ=0.9264;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145574910 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0086;AVGPOST=0.9997;RSQ=0.9862;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 145574977 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0192;AVGPOST=0.9989;RSQ=0.9765;ERATE=0.0005;THETA=0.0006;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 145575014 . G GT 45 PASS INDEL;BAVGPOST=0.999;BRSQ=0.619;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6252;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145575043 . GT G 432 PASS INDEL;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0046;AVGPOST=0.9991;RSQ=0.9142;ERATE=0.0004;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145575061 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8655;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145575200 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0066;AVGPOST=0.9962;RSQ=0.7551;ERATE=0.0008;THETA=0.0011;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145575214 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.443;LDAF=0.0110;AVGPOST=0.9885;RSQ=0.5766;ERATE=0.0008;THETA=0.0033;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 145575222 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0064;AVGPOST=0.9944;RSQ=0.6011;ERATE=0.0008;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145575226 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.555;LDAF=0.0102;AVGPOST=0.9910;RSQ=0.6248;ERATE=0.0008;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145575240 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.895;LDAF=0.9596;AVGPOST=0.9845;RSQ=0.8509;ERATE=0.0012;THETA=0.0004;AC=2106;AN=2184 GT:DS:GL:BD 0.96428573 1 1 145575396 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7250;ERATE=0.0006;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145575495 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.763;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9323;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145575582 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0029;AVGPOST=0.9984;RSQ=0.7674;ERATE=0.0009;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145575665 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0165;AVGPOST=0.9988;RSQ=0.9703;ERATE=0.0003;THETA=0.0019;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 145575684 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.639;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.4230;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145575881 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0056;AVGPOST=0.9971;RSQ=0.7592;ERATE=0.0006;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145575884 . C CT 264 PASS INDEL;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0040;AVGPOST=0.9957;RSQ=0.5580;ERATE=0.0006;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145576501 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0046;AVGPOST=0.9962;RSQ=0.6860;ERATE=0.0005;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145576556 . T TG 22082 PASS INDEL;BAVGPOST=0.989;BRSQ=0.763;LDAF=0.9756;AVGPOST=0.9815;RSQ=0.6996;ERATE=0.0014;THETA=0.0015;AC=2144;AN=2184 GT:DS:GL:BD 0.98168498 1 1 145576560 rs11387768 G GC 58060 PASS INDEL;BAVGPOST=0.992;BRSQ=0.796;LDAF=0.9807;AVGPOST=0.9909;RSQ=0.8214;ERATE=0.0009;THETA=0.0006;AC=2146;AN=2184 GT:DS:GL:BD 0.98260075 1 1 145576942 . T TA 471 PASS INDEL;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0030;AVGPOST=0.9985;RSQ=0.8173;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145576951 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145577033 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145577225 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.735;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4680;ERATE=0.0006;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145577226 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145577246 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4793;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145577459 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6161;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145577585 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.993;LDAF=0.3707;AVGPOST=0.9861;RSQ=0.9796;ERATE=0.0006;THETA=0.0021;AC=809;AN=2184 GT:DS:GL:BD 0.37042123 0 1 145577622 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0004;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145577702 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5993;ERATE=0.0004;THETA=0.0038;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145577707 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145577732 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9233;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145577740 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145577741 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145577796 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9871;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145577844 . G GT 88 PASS INDEL;BAVGPOST=0.999;BRSQ=0.574;LDAF=0.0012;AVGPOST=0.9983;RSQ=0.3968;ERATE=0.0007;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145577912 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9670;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145577985 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9914;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145578046 . CTG C 31 PASS INDEL;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7178;ERATE=0.0005;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145578081 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145578140 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145578142 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0014;THETA=0.0029;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145578309 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0038;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145578333 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9525;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145578386 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145578436 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0004;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145578472 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145578629 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0059;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145578689 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0069;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145578730 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0071;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145578771 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=1.0000;RSQ=0.9957;ERATE=0.0008;THETA=0.0035;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145578790 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145578791 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0509;AVGPOST=0.9997;RSQ=0.9950;ERATE=0.0021;THETA=0.0027;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 145578930 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145578974 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 145579368 . T TA 55 PASS INDEL;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4231;ERATE=0.0005;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145579371 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9682;ERATE=0.0005;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145579372 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145579463 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145579485 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145579507 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0072;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145579809 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.637;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145579864 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0110;AVGPOST=0.9992;RSQ=0.9705;ERATE=0.0007;THETA=0.0033;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 145580058 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0006;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145580106 . C CCGAGA 1066 PASS INDEL;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0040;AVGPOST=0.9978;RSQ=0.7608;ERATE=0.0004;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145580107 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145580448 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145580551 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145580580 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145580631 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145580957 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8178;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145581008 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145581127 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145581155 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145581279 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0039;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145581342 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0019;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145581354 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145581455 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0041;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0019;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145581508 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0018;AVGPOST=0.9999;RSQ=0.9762;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145581600 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145581623 . A ATTTCTT 3138 PASS INDEL;BAVGPOST=0.995;BRSQ=0.921;LDAF=0.0197;AVGPOST=0.9926;RSQ=0.8530;ERATE=0.0004;THETA=0.0005;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 145581639 . C CT 1087 PASS INDEL;BAVGPOST=0.996;BRSQ=0.921;LDAF=0.0205;AVGPOST=0.9913;RSQ=0.8348;ERATE=0.0004;THETA=0.0008;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 145581797 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.946;LDAF=0.0394;AVGPOST=0.9913;RSQ=0.9145;ERATE=0.0005;THETA=0.0008;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 145581831 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0032;AVGPOST=0.9960;RSQ=0.4585;ERATE=0.0010;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145581961 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145582188 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7355;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145582270 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.862;LDAF=0.0027;AVGPOST=0.9987;RSQ=0.8137;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145582282 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6461;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145582375 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.803;LDAF=0.0050;AVGPOST=0.9973;RSQ=0.7805;ERATE=0.0005;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145582659 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0004;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145582965 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5558;ERATE=0.0005;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145582966 rs72372718 CTTTA C 24 PASS INDEL;BAVGPOST=0.997;BRSQ=0.604;LDAF=0.0038;AVGPOST=0.9966;RSQ=0.6777;ERATE=0.0004;THETA=0.0013;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145583030 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145583646 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0058;AVGPOST=0.9997;RSQ=0.9833;ERATE=0.0004;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 145583782 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145583938 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=1.0000;RSQ=0.9972;ERATE=0.0003;THETA=0.0036;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145583960 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145583963 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0044;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145584071 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145584277 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145584378 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0051;AVGPOST=1.0000;RSQ=0.9957;ERATE=0.0003;THETA=0.0012;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145584467 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0017;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145584500 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145584674 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145584756 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145584763 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145584764 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0038;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145584776 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0027;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145584808 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145584809 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145584835 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145584970 . CTT C 3084 PASS INDEL;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0137;AVGPOST=0.9980;RSQ=0.9407;ERATE=0.0004;THETA=0.0016;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 145584996 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145585064 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.809;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145585125 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145585135 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=1.0000;RSQ=0.9963;ERATE=0.0004;THETA=0.0039;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 145585214 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9282;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145585218 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145585250 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145585286 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145585317 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9374;AVGPOST=0.9999;RSQ=0.9994;ERATE=0.0015;THETA=0.0007;AC=2047;AN=2184 GT:DS:GL:BD 0.93727106 1 1 145585336 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145585420 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145585424 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8499;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145585518 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145585534 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145585539 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0001;AVGPOST=0.9999;RSQ=0.0499;ERATE=0.0004;THETA=0.0008;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 145585576 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0004;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145585582 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145585595 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.866;LDAF=0.0281;AVGPOST=0.9888;RSQ=0.8336;ERATE=0.0209;THETA=0.0047;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 145585596 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145585627 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145585645 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0009;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 145585646 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145585704 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.702;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8890;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145585820 . C CA 49 PASS INDEL;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145585833 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0105;AVGPOST=0.9995;RSQ=0.9779;ERATE=0.0004;THETA=0.0014;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 145585868 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9313;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145585949 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9282;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145586048 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0240;AVGPOST=0.9986;RSQ=0.9733;ERATE=0.0005;THETA=0.0039;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 145586209 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145586309 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.9918;AVGPOST=0.9984;RSQ=0.9124;ERATE=0.0015;THETA=0.0010;AC=2167;AN=2184 GT:DS:GL:BD 0.99221611 1 1 145586342 rs71840802 TC T 18514 PASS INDEL;BAVGPOST=0.947;BRSQ=0.881;LDAF=0.2334;AVGPOST=0.9346;RSQ=0.8646;ERATE=0.0194;THETA=0.0008;AC=480;AN=2184 GT:DS:GL:BD 0.21978022 0 1 145586369 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145586403 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.9266;AVGPOST=0.9971;RSQ=0.9858;ERATE=0.0036;THETA=0.0017;AC=2022;AN=2184 GT:DS:GL:BD 0.92582417 1 1 145586427 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0074;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145586602 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145586615 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145586671 . CTTTTA C 1991 PASS INDEL;BAVGPOST=0.997;BRSQ=0.908;LDAF=0.0151;AVGPOST=0.9934;RSQ=0.8520;ERATE=0.0004;THETA=0.0085;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 145586678 . AC A 869 PASS INDEL;BAVGPOST=0.997;BRSQ=0.908;LDAF=0.0155;AVGPOST=0.9932;RSQ=0.8472;ERATE=0.0004;THETA=0.0031;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 145586680 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9338;ERATE=0.0010;THETA=0.0020;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145586736 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145586741 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0225;AVGPOST=0.9998;RSQ=0.9966;ERATE=0.0004;THETA=0.0005;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 145586780 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2867;AVGPOST=0.9988;RSQ=0.9979;ERATE=0.0005;THETA=0.0012;AC=626;AN=2184 GT:DS:GL:BD 0.28663003 0 1 145586794 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9434;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145586839 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0009;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145586895 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145586903 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145586940 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0050;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145587234 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145587244 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0048;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145587256 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145587314 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145587383 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0011;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145587436 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8499;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145587453 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0132;AVGPOST=0.9997;RSQ=0.9909;ERATE=0.0003;THETA=0.0015;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 145587491 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145587498 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145587539 . TC T 739 PASS INDEL;BAVGPOST=0.992;BRSQ=0.621;LDAF=0.0095;AVGPOST=0.9891;RSQ=0.5586;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145587540 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1411;AVGPOST=0.9994;RSQ=0.9983;ERATE=0.0006;THETA=0.0007;AC=309;AN=2184 GT:DS:GL:BD 0.14148352 0 1 145587627 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0031;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145587769 . ATG A 56 PASS INDEL;BAVGPOST=1.000;BRSQ=0.758;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4978;ERATE=0.0005;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145587917 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8710;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145587918 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145588184 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2437;AVGPOST=0.9984;RSQ=0.9967;ERATE=0.0004;THETA=0.0015;AC=530;AN=2184 GT:DS:GL:BD 0.24267399 0 1 145588210 . ATGG A 317 PASS INDEL;BAVGPOST=0.999;BRSQ=0.783;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5959;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145588302 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0054;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145588334 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145588411 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0008;AVGPOST=0.9999;RSQ=0.9255;ERATE=0.0004;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145588536 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6862;AVGPOST=0.9989;RSQ=0.9982;ERATE=0.0013;THETA=0.0034;AC=1500;AN=2184 GT:DS:GL:BD 0.68681318 1 1 145588554 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145588654 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0064;AVGPOST=0.9996;RSQ=0.9730;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145588655 . AG A 38 PASS INDEL;BAVGPOST=1.000;BRSQ=0.767;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4103;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145588669 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145588777 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=1.0000;RSQ=0.9941;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145588901 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145588905 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0206;AVGPOST=0.9999;RSQ=0.9978;ERATE=0.0003;THETA=0.0008;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 145589171 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9107;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145589314 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9107;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145589323 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145589491 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.9538;AVGPOST=0.9979;RSQ=0.9846;ERATE=0.0004;THETA=0.0005;AC=2085;AN=2184 GT:DS:GL:BD 0.95467031 1 1 145589516 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.984;LDAF=0.5400;AVGPOST=0.9846;RSQ=0.9770;ERATE=0.0011;THETA=0.0006;AC=1180;AN=2184 GT:DS:GL:BD 0.54029304 1 1 145589548 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8902;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145589666 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.9489;AVGPOST=0.9988;RSQ=0.9910;ERATE=0.0003;THETA=0.0006;AC=2072;AN=2184 GT:DS:GL:BD 0.94871795 1 1 145589700 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.7846;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145589709 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145589747 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7059;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145589798 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0113;AVGPOST=0.9994;RSQ=0.9820;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 145589803 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5400;ERATE=0.0004;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145589844 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.9026;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145589926 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7646;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145589973 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.9668;AVGPOST=0.9995;RSQ=0.9944;ERATE=0.0004;THETA=0.0006;AC=2112;AN=2184 GT:DS:GL:BD 0.96703297 1 1 145590029 . T TCA 204 PASS INDEL;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5648;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145590084 . C CCAT 58 PASS INDEL;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5341;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145590124 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.843;LDAF=0.0201;AVGPOST=0.9921;RSQ=0.8521;ERATE=0.0005;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 145590192 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.955;LDAF=0.0586;AVGPOST=0.9861;RSQ=0.9023;ERATE=0.0005;THETA=0.0005;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 145590232 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0035;AVGPOST=0.9984;RSQ=0.8346;ERATE=0.0005;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145590380 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.8949;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145590384 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145590451 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.925;LDAF=0.0127;AVGPOST=0.9944;RSQ=0.8287;ERATE=0.0005;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 145590473 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9813;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145590610 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8090;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145590682 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.940;LDAF=0.0288;AVGPOST=0.9962;RSQ=0.9553;ERATE=0.0003;THETA=0.0008;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 145590807 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145590968 . T TGGTAC 287 PASS INDEL;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145591144 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7041;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145591162 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145591247 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0041;AVGPOST=1.0000;RSQ=0.9947;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145591266 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7821;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145591350 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145591401 . TC T 46 PASS INDEL;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6010;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145591413 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6105;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145591460 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7296;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145591679 . G GAT 130 PASS INDEL;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5305;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145591688 rs10564953 AAAC A 72367 PASS INDEL;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.6879;AVGPOST=0.9926;RSQ=0.9875;ERATE=0.0010;THETA=0.0005;AC=1508;AN=2184 GT:DS:GL:BD 0.69047618 1 1 145591747 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145591749 . TGA T 89 PASS INDEL;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0019;AVGPOST=0.9985;RSQ=0.6561;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145591785 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8216;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145591795 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6464;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145591853 rs71885741 TAC T 35872 PASS INDEL;BAVGPOST=0.991;BRSQ=0.985;LDAF=0.2367;AVGPOST=0.9947;RSQ=0.9894;ERATE=0.0006;THETA=0.0002;AC=515;AN=2184 GT:DS:GL:BD 0.23580585 0 1 145592014 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145592027 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.948;LDAF=0.0170;AVGPOST=0.9973;RSQ=0.9360;ERATE=0.0004;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 145592065 . C CA 142 PASS INDEL;BAVGPOST=0.982;BRSQ=0.577;LDAF=0.0295;AVGPOST=0.9618;RSQ=0.4660;ERATE=0.0093;THETA=0.0037;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 145592067 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.632;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6122;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145592073 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.967;LDAF=0.6988;AVGPOST=0.9714;RSQ=0.9536;ERATE=0.0074;THETA=0.0004;AC=1532;AN=2184 GT:DS:GL:BD 0.70146519 1 1 145592088 . A AT 5046 PASS INDEL;BAVGPOST=0.995;BRSQ=0.928;LDAF=0.0316;AVGPOST=0.9926;RSQ=0.9079;ERATE=0.0005;THETA=0.0011;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 145592198 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7393;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145592273 rs72181923 T TA 414 PASS INDEL;BAVGPOST=0.958;BRSQ=0.518;LDAF=0.0683;AVGPOST=0.9174;RSQ=0.4792;ERATE=0.0124;THETA=0.0003;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 145592540 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.7557;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145592622 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145592737 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145593246 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0073;AVGPOST=0.9984;RSQ=0.9113;ERATE=0.0004;THETA=0.0016;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 145593465 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0041;AVGPOST=0.9990;RSQ=0.8894;ERATE=0.0005;THETA=0.0031;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145593488 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0081;AVGPOST=0.9992;RSQ=0.9601;ERATE=0.0003;THETA=0.0010;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145593632 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8090;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145593836 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145594149 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145594186 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145594203 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145594220 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0142;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 145594250 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145594278 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145594349 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145594380 . T TG 21 PASS INDEL;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6675;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145594413 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8940;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145594535 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.813;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7490;ERATE=0.0006;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145594549 . C CA 52 PASS INDEL;BAVGPOST=0.987;BRSQ=0.450;LDAF=0.0191;AVGPOST=0.9725;RSQ=0.4144;ERATE=0.0051;THETA=0.0060;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 145594677 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.852;LDAF=0.0184;AVGPOST=0.9938;RSQ=0.8923;ERATE=0.0005;THETA=0.0009;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 145594799 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6953;AVGPOST=0.9974;RSQ=0.9954;ERATE=0.0007;THETA=0.0020;AC=1521;AN=2184 GT:DS:GL:BD 0.69642860 1 1 145594907 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145595094 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8998;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145595144 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145595306 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145595423 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6973;AVGPOST=0.9988;RSQ=0.9979;ERATE=0.0004;THETA=0.0021;AC=1525;AN=2184 GT:DS:GL:BD 0.69826007 1 1 145595453 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8384;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145595542 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0163;AVGPOST=0.9988;RSQ=0.9704;ERATE=0.0003;THETA=0.0009;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 145595625 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5104;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145595715 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0020;AVGPOST=0.9976;RSQ=0.5619;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145595784 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0028;AVGPOST=0.9994;RSQ=0.9036;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145595820 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6957;AVGPOST=0.9974;RSQ=0.9955;ERATE=0.0005;THETA=0.0004;AC=1521;AN=2184 GT:DS:GL:BD 0.69642860 1 1 145595823 . GTATTAT G 219 PASS INDEL;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5518;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145595846 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0080;AVGPOST=0.9977;RSQ=0.8765;ERATE=0.0004;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 145595859 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9553;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145595900 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.756;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145595916 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.859;LDAF=0.9466;AVGPOST=0.9680;RSQ=0.7885;ERATE=0.0049;THETA=0.0005;AC=2091;AN=2184 GT:DS:GL:BD 0.95741761 1 1 145596011 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.748;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6312;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145596063 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5363;ERATE=0.0007;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145596112 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0181;AVGPOST=0.9984;RSQ=0.9643;ERATE=0.0004;THETA=0.0009;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 145596168 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9866;ERATE=0.0003;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145596173 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0019;AVGPOST=0.9975;RSQ=0.4870;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145596308 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.598;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6019;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145596395 . TTTTTTG T 199 PASS INDEL;BAVGPOST=0.992;BRSQ=0.401;LDAF=0.0663;AVGPOST=0.9135;RSQ=0.4740;ERATE=0.0047;THETA=0.0005;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 145596401 . G GT 319 PASS INDEL;BAVGPOST=0.998;BRSQ=0.746;LDAF=0.0035;AVGPOST=0.9975;RSQ=0.7219;ERATE=0.0006;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145596408 . G GT 479 PASS INDEL;BAVGPOST=0.993;BRSQ=0.654;LDAF=0.0163;AVGPOST=0.9830;RSQ=0.5660;ERATE=0.0041;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 145596431 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5826;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145596474 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5677;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145596820 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145596921 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 145596931 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 145597014 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145597025 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9524;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145597104 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145597116 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9671;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=2112;AN=2184 GT:DS:GL:BD 0.96703297 1 1 145597189 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145597256 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0190;AVGPOST=0.9995;RSQ=0.9838;ERATE=0.0004;THETA=0.0004;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 145597264 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=1.0000;RSQ=0.9975;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145597327 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145597345 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145597384 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145597409 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145597417 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2343;AVGPOST=0.9996;RSQ=0.9991;ERATE=0.0004;THETA=0.0006;AC=510;AN=2184 GT:DS:GL:BD 0.23351648 0 1 145597473 . AG A 711 PASS INDEL;BAVGPOST=0.998;BRSQ=0.740;LDAF=0.0045;AVGPOST=0.9970;RSQ=0.7338;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145597475 . GAAGT G 249 PASS INDEL;BAVGPOST=0.998;BRSQ=0.776;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8162;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145597478 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145597501 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0243;AVGPOST=0.9999;RSQ=0.9983;ERATE=0.0003;THETA=0.0008;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 145597578 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145597606 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145597867 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8473;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145597934 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0025;AVGPOST=0.9987;RSQ=0.7958;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145597943 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1382;AVGPOST=0.9981;RSQ=0.9936;ERATE=0.0004;THETA=0.0008;AC=301;AN=2184 GT:DS:GL:BD 0.13782051 0 1 145597966 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7891;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145597988 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0106;AVGPOST=0.9987;RSQ=0.9498;ERATE=0.0003;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145598230 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0165;AVGPOST=0.9999;RSQ=0.9974;ERATE=0.0003;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 145598285 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0041;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145598415 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145598459 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9671;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=2112;AN=2184 GT:DS:GL:BD 0.96703297 1 1 145598463 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145598480 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145598505 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9268;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145598617 . CTA C 18 PASS INDEL;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0014;AVGPOST=0.9979;RSQ=0.4022;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145598619 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145598992 rs71077275 TTTTAA T 30494 PASS INDEL;BAVGPOST=0.984;BRSQ=0.961;LDAF=0.2382;AVGPOST=0.9930;RSQ=0.9855;ERATE=0.0010;THETA=0.0009;AC=520;AN=2184 GT:DS:GL:BD 0.23809524 0 1 145599038 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2396;AVGPOST=0.9985;RSQ=0.9965;ERATE=0.0004;THETA=0.0005;AC=521;AN=2184 GT:DS:GL:BD 0.23855311 0 1 145599059 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8497;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145599093 . CTAAAA C 1110 PASS INDEL;BAVGPOST=0.996;BRSQ=0.708;LDAF=0.0113;AVGPOST=0.9905;RSQ=0.6528;ERATE=0.0010;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 145599112 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145599163 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7163;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145599224 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7357;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145599227 . TA T 122 PASS INDEL;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5650;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145599417 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5068;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145599423 . CAGG C 156 PASS INDEL;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4808;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145599469 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7089;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145599613 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5747;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145599750 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.899;LDAF=0.0384;AVGPOST=0.9801;RSQ=0.7927;ERATE=0.0007;THETA=0.0004;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 145599909 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.699;LDAF=0.0019;AVGPOST=0.9985;RSQ=0.6487;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145599919 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.8568;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145600097 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145600120 . T TA 279 PASS INDEL;BAVGPOST=0.848;BRSQ=0.511;LDAF=0.1562;AVGPOST=0.8715;RSQ=0.6259;ERATE=0.0057;THETA=0.0009;AC=293;AN=2184 GT:DS:GL:BD 0.13415751 0 1 145600127 rs58293477 A AT 17815 PASS INDEL;BAVGPOST=0.995;BRSQ=0.989;LDAF=0.2369;AVGPOST=0.9963;RSQ=0.9916;ERATE=0.0007;THETA=0.0008;AC=515;AN=2184 GT:DS:GL:BD 0.23580585 0 1 145600142 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.644;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4157;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145600255 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.9572;AVGPOST=0.9992;RSQ=0.9922;ERATE=0.0005;THETA=0.0003;AC=2091;AN=2184 GT:DS:GL:BD 0.95741761 1 1 145600301 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1378;AVGPOST=0.9986;RSQ=0.9951;ERATE=0.0003;THETA=0.0006;AC=300;AN=2184 GT:DS:GL:BD 0.13736264 0 1 145600339 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9900;ERATE=0.0003;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145600340 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0077;AVGPOST=0.9992;RSQ=0.9507;ERATE=0.0006;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 145600425 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145600494 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4340;ERATE=0.0006;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145600616 . A AGAC 40 PASS INDEL;BAVGPOST=0.998;BRSQ=0.657;LDAF=0.0045;AVGPOST=0.9957;RSQ=0.5910;ERATE=0.0012;THETA=0.0021;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145600651 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0006;AVGPOST=0.9988;RSQ=0.3608;ERATE=0.0004;THETA=0.0007;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 145600723 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.800;LDAF=0.0036;AVGPOST=0.9979;RSQ=0.7361;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145600741 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6545;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145600765 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0059;AVGPOST=0.9990;RSQ=0.9268;ERATE=0.0004;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145600798 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7130;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145600919 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7497;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145600946 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.5400;AVGPOST=0.9963;RSQ=0.9941;ERATE=0.0007;THETA=0.0005;AC=1181;AN=2184 GT:DS:GL:BD 0.54075092 1 1 145601024 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9421;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145601206 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9125;ERATE=0.0005;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145601412 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145601718 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145601844 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145601861 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9753;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=2130;AN=2184 GT:DS:GL:BD 0.97527474 1 1 145601947 . G GT 791 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0048;AVGPOST=0.9994;RSQ=0.9414;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145602010 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145602113 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0155;AVGPOST=0.9985;RSQ=0.9577;ERATE=0.0005;THETA=0.0012;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 145602151 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4086;ERATE=0.0005;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145602244 . T TG 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0018;AVGPOST=0.9988;RSQ=0.6989;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145602482 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7873;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145602778 . CTT C 517 PASS INDEL;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145602786 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.812;LDAF=0.0031;AVGPOST=0.9975;RSQ=0.7204;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145602791 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6958;AVGPOST=0.9984;RSQ=0.9972;ERATE=0.0004;THETA=0.0005;AC=1521;AN=2184 GT:DS:GL:BD 0.69642860 1 1 145602851 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9767;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145602869 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.700;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6753;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145602912 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8619;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145602924 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145603155 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.771;LDAF=0.0054;AVGPOST=0.9964;RSQ=0.7183;ERATE=0.0005;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145603226 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.671;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145603299 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6564;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145603359 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.979;LDAF=0.0537;AVGPOST=0.9961;RSQ=0.9670;ERATE=0.0004;THETA=0.0017;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 145603446 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145603554 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4483;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145603581 rs112881905 T TC 291 PASS INDEL;BAVGPOST=0.991;BRSQ=0.643;LDAF=0.0232;AVGPOST=0.9699;RSQ=0.4640;ERATE=0.0022;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 145603730 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.600;LDAF=0.0033;AVGPOST=0.9957;RSQ=0.4499;ERATE=0.0015;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145603873 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9360;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145603886 . ACTCT A 44 PASS INDEL;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6037;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145603910 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9681;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145604237 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.679;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5672;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145604291 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145604357 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.760;LDAF=0.0330;AVGPOST=0.9835;RSQ=0.8053;ERATE=0.0013;THETA=0.0006;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 145604358 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.647;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4949;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145604402 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.836;LDAF=0.0025;AVGPOST=0.9989;RSQ=0.8465;ERATE=0.0004;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145604788 . TG T 6660 PASS INDEL;BAVGPOST=0.931;BRSQ=0.815;LDAF=0.2151;AVGPOST=0.9583;RSQ=0.9161;ERATE=0.0019;THETA=0.0011;AC=483;AN=2184 GT:DS:GL:BD 0.22115384 0 1 145604791 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.926;LDAF=0.2326;AVGPOST=0.9680;RSQ=0.9357;ERATE=0.0087;THETA=0.0007;AC=498;AN=2184 GT:DS:GL:BD 0.22802198 0 1 145604995 . ACT A 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5874;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145605162 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6294;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145605247 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8498;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145605313 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145605318 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2350;AVGPOST=0.9991;RSQ=0.9981;ERATE=0.0004;THETA=0.0006;AC=511;AN=2184 GT:DS:GL:BD 0.23397435 0 1 145605361 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8453;ERATE=0.0004;THETA=0.0023;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145605425 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0035;AVGPOST=0.9993;RSQ=0.9319;ERATE=0.0004;THETA=0.0014;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145605485 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145605584 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145605678 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0018;AVGPOST=0.9996;RSQ=0.9072;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145605717 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0024;AVGPOST=0.9992;RSQ=0.8690;ERATE=0.0004;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145605772 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8625;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145605801 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5911;ERATE=0.0004;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145605888 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8632;ERATE=0.0003;THETA=0.0044;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145605901 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0038;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145605924 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145606014 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0004;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145606147 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145606226 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145606361 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0087;AVGPOST=0.9998;RSQ=0.9907;ERATE=0.0003;THETA=0.0016;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 145606436 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0092;AVGPOST=1.0000;RSQ=0.9976;ERATE=0.0003;THETA=0.0025;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145606458 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0041;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145606564 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5895;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145606605 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145606765 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145606817 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145606887 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.929;LDAF=0.0061;AVGPOST=0.9988;RSQ=0.9225;ERATE=0.0003;THETA=0.0010;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145606889 . T TG 21 PASS INDEL;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6556;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145607035 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0069;AVGPOST=0.9972;RSQ=0.8552;ERATE=0.0005;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 145607102 . CA C 6586 PASS INDEL;BAVGPOST=0.982;BRSQ=0.955;LDAF=0.2304;AVGPOST=0.9900;RSQ=0.9809;ERATE=0.0004;THETA=0.0011;AC=502;AN=2184 GT:DS:GL:BD 0.22985348 0 1 145607103 rs11319703 AC A 37224 PASS INDEL;BAVGPOST=0.989;BRSQ=0.973;LDAF=0.2310;AVGPOST=0.9915;RSQ=0.9837;ERATE=0.0003;THETA=0.0015;AC=502;AN=2184 GT:DS:GL:BD 0.22985348 0 1 145607171 . CT C 49 PASS INDEL;BAVGPOST=0.974;BRSQ=0.426;LDAF=0.0368;AVGPOST=0.9483;RSQ=0.4231;ERATE=0.0130;THETA=0.0008;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 145607325 . CCTGG C 511 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0038;AVGPOST=0.9989;RSQ=0.8715;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145607333 . AT A 250 PASS INDEL;BAVGPOST=0.500;BRSQ=0.030;LDAF=0.2038;AVGPOST=0.7294;RSQ=0.3043;ERATE=0.0127;THETA=0.0006;AC=242;AN=2184 GT:DS:GL:BD 0.11080586 0 1 145607365 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.552;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.3220;ERATE=0.0008;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145607440 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.1371;AVGPOST=0.9858;RSQ=0.9521;ERATE=0.0005;THETA=0.0009;AC=296;AN=2184 GT:DS:GL:BD 0.13553114 0 1 145607538 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.709;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7655;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145607572 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.683;LDAF=0.0285;AVGPOST=0.9821;RSQ=0.7645;ERATE=0.0006;THETA=0.0040;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 145607965 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145608069 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145608101 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0011;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 145608122 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145608146 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145608185 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145608221 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145608256 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0003;THETA=0.0026;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145608298 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0046;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145608435 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145608468 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145608556 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9620;ERATE=0.0009;THETA=0.0014;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145608635 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145608651 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145608706 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145608744 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0046;AVGPOST=1.0000;RSQ=0.9952;ERATE=0.0003;THETA=0.0021;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145608848 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0106;AVGPOST=0.9998;RSQ=0.9898;ERATE=0.0003;THETA=0.0069;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 145608919 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0052;AVGPOST=0.9997;RSQ=0.9759;ERATE=0.0004;THETA=0.0059;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145609033 . C CT 135 PASS INDEL;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145609047 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0054;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145609240 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145609352 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145609399 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0029;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145609450 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9360;ERATE=0.0011;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145609510 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0178;AVGPOST=0.9992;RSQ=0.9853;ERATE=0.0003;THETA=0.0013;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 145609546 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145609619 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0054;AVGPOST=0.9996;RSQ=0.9739;ERATE=0.0004;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145609753 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5919;ERATE=0.0005;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145609759 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.612;LDAF=0.0031;AVGPOST=0.9962;RSQ=0.4954;ERATE=0.0005;THETA=0.0041;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145609848 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7563;ERATE=0.0004;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145609971 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2342;AVGPOST=0.9857;RSQ=0.9720;ERATE=0.0008;THETA=0.0010;AC=512;AN=2184 GT:DS:GL:BD 0.23443224 0 1 145609992 . C CA 695 PASS INDEL;BAVGPOST=0.928;BRSQ=0.470;LDAF=0.1098;AVGPOST=0.8749;RSQ=0.4636;ERATE=0.0253;THETA=0.0012;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 145610001 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.953;BRSQ=0.785;LDAF=0.9003;AVGPOST=0.9516;RSQ=0.8176;ERATE=0.0078;THETA=0.0059;AC=1991;AN=2184 GT:DS:GL:BD 0.91163003 1 1 145610042 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4283;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145610071 . T TA 299 PASS INDEL;BAVGPOST=0.990;BRSQ=0.532;LDAF=0.0130;AVGPOST=0.9857;RSQ=0.5465;ERATE=0.0049;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 145610163 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5642;ERATE=0.0003;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145610210 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9406;AVGPOST=0.9988;RSQ=0.9918;ERATE=0.0004;THETA=0.0016;AC=2055;AN=2184 GT:DS:GL:BD 0.94093406 1 1 145610290 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0174;AVGPOST=0.9986;RSQ=0.9677;ERATE=0.0005;THETA=0.0008;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 145610423 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0048;AVGPOST=0.9992;RSQ=0.9251;ERATE=0.0006;THETA=0.0055;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145610762 . C CG 10 PASS INDEL;BAVGPOST=0.999;BRSQ=0.608;LDAF=0.0017;AVGPOST=0.9978;RSQ=0.4138;ERATE=0.0006;THETA=0.0064;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145610809 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.705;LDAF=0.0059;AVGPOST=0.9984;RSQ=0.9053;ERATE=0.0004;THETA=0.0035;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145610860 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.827;LDAF=0.0051;AVGPOST=0.9984;RSQ=0.8780;ERATE=0.0007;THETA=0.0015;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145610901 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.719;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8885;ERATE=0.0005;THETA=0.0019;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145611399 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0164;AVGPOST=0.9989;RSQ=0.9705;ERATE=0.0004;THETA=0.0010;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 145611404 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0004;AVGPOST=0.9995;RSQ=0.4829;ERATE=0.0003;THETA=0.0041;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145611456 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.836;LDAF=0.0129;AVGPOST=0.9960;RSQ=0.8777;ERATE=0.0010;THETA=0.0046;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 145611593 . AT A 10751 PASS INDEL;BAVGPOST=0.872;BRSQ=0.745;LDAF=0.4384;AVGPOST=0.8459;RSQ=0.7353;ERATE=0.0210;THETA=0.0073;AC=975;AN=2184 GT:DS:GL:BD 0.44642857 0 1 145612225 . AGGCGC A 59 PASS INDEL;BAVGPOST=0.961;BRSQ=0.021;LDAF=0.0956;AVGPOST=0.8383;RSQ=0.2568;ERATE=0.0050;THETA=0.0009;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 145612794 . T TG 50 PASS INDEL;BAVGPOST=0.994;BRSQ=0.351;LDAF=0.0066;AVGPOST=0.9930;RSQ=0.5941;ERATE=0.0007;THETA=0.0060;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145612814 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.700;LDAF=0.0131;AVGPOST=0.9936;RSQ=0.8029;ERATE=0.0005;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 145612816 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.702;LDAF=0.0128;AVGPOST=0.9941;RSQ=0.8182;ERATE=0.0005;THETA=0.0014;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 145613077 . GC G 146 PASS INDEL;BAVGPOST=0.996;BRSQ=0.649;LDAF=0.0058;AVGPOST=0.9947;RSQ=0.6173;ERATE=0.0027;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145614361 . T TA 12 PASS INDEL;BAVGPOST=0.993;BRSQ=0.477;LDAF=0.0080;AVGPOST=0.9892;RSQ=0.5046;ERATE=0.0010;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145614420 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.720;LDAF=0.0099;AVGPOST=0.9870;RSQ=0.4539;ERATE=0.0026;THETA=0.0072;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145614432 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.707;LDAF=0.0500;AVGPOST=0.9813;RSQ=0.8567;ERATE=0.0005;THETA=0.0005;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 145614468 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.976;LDAF=0.2280;AVGPOST=0.9808;RSQ=0.9633;ERATE=0.0007;THETA=0.0079;AC=493;AN=2184 GT:DS:GL:BD 0.22573259 0 1 145614482 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.946;LDAF=0.7412;AVGPOST=0.9543;RSQ=0.9061;ERATE=0.0048;THETA=0.0019;AC=1630;AN=2184 GT:DS:GL:BD 0.74633700 1 1 145614485 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0045;AVGPOST=0.9945;RSQ=0.5085;ERATE=0.0007;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145614493 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.695;LDAF=0.0065;AVGPOST=0.9975;RSQ=0.8398;ERATE=0.0006;THETA=0.0012;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145614653 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.849;BRSQ=0.410;LDAF=0.8267;AVGPOST=0.7945;RSQ=0.4708;ERATE=0.0137;THETA=0.0064;AC=1946;AN=2184 GT:DS:GL:BD 0.89102566 1 1 145614767 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.855;LDAF=0.0700;AVGPOST=0.9835;RSQ=0.8997;ERATE=0.0036;THETA=0.0004;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 145614779 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5922;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145614787 . A AT 33 PASS INDEL;BAVGPOST=0.966;BRSQ=0.280;LDAF=0.0263;AVGPOST=0.9737;RSQ=0.6488;ERATE=0.0004;THETA=0.0008;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 145615303 rs58321066 G GC 828 PASS INDEL;BAVGPOST=0.905;BRSQ=0.291;LDAF=0.1297;AVGPOST=0.8215;RSQ=0.3588;ERATE=0.0133;THETA=0.0014;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 145615437 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0026;AVGPOST=0.9973;RSQ=0.5818;ERATE=0.0007;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145615530 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0164;AVGPOST=0.9987;RSQ=0.9666;ERATE=0.0004;THETA=0.0034;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 145615675 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.918;LDAF=0.0623;AVGPOST=0.9927;RSQ=0.9498;ERATE=0.0011;THETA=0.0046;AC=135;AN=2184 GT:DS:GL:BD 0.06181319 0 1 145615695 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8344;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145615700 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6164;ERATE=0.0005;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145615710 . ACTG A 2301 PASS INDEL;BAVGPOST=0.982;BRSQ=0.798;LDAF=0.0548;AVGPOST=0.9840;RSQ=0.8884;ERATE=0.0009;THETA=0.0044;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 145615850 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.714;LDAF=0.0870;AVGPOST=0.9415;RSQ=0.6949;ERATE=0.0116;THETA=0.0010;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 145616867 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.961;LDAF=0.5055;AVGPOST=0.9692;RSQ=0.9514;ERATE=0.0035;THETA=0.0011;AC=1113;AN=2184 GT:DS:GL:BD 0.50961536 1 1 145617165 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.949;BRSQ=0.901;LDAF=0.4860;AVGPOST=0.9234;RSQ=0.8809;ERATE=0.0140;THETA=0.0008;AC=1075;AN=2184 GT:DS:GL:BD 0.49221611 0 1 145617486 . AT A 99 PASS INDEL;BAVGPOST=0.995;BRSQ=0.580;LDAF=0.0091;AVGPOST=0.9887;RSQ=0.5379;ERATE=0.0012;THETA=0.0039;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145617528 . TA T 43 PASS INDEL;BAVGPOST=0.999;BRSQ=0.653;LDAF=0.0019;AVGPOST=0.9977;RSQ=0.5664;ERATE=0.0004;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145617533 . AC A 647 PASS INDEL;BAVGPOST=0.997;BRSQ=0.807;LDAF=0.0051;AVGPOST=0.9970;RSQ=0.7928;ERATE=0.0007;THETA=0.0041;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145617950 . CAAAA C 179 PASS INDEL;BAVGPOST=0.995;BRSQ=0.141;LDAF=0.0125;AVGPOST=0.9825;RSQ=0.4590;ERATE=0.0010;THETA=0.0022;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 145618137 . T TCA 109 PASS INDEL;BAVGPOST=0.963;BRSQ=0.165;LDAF=0.1242;AVGPOST=0.8105;RSQ=0.3066;ERATE=0.0085;THETA=0.0005;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 145618141 . C CA 152 PASS INDEL;BAVGPOST=0.900;BRSQ=0.106;LDAF=0.1180;AVGPOST=0.8162;RSQ=0.2729;ERATE=0.0108;THETA=0.0024;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 145618357 . GAA G 123 PASS INDEL;BAVGPOST=0.995;BRSQ=0.741;LDAF=0.0116;AVGPOST=0.9900;RSQ=0.6544;ERATE=0.0039;THETA=0.0009;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145619179 . ATTTC A 98 PASS INDEL;BAVGPOST=0.990;BRSQ=0.082;LDAF=0.0341;AVGPOST=0.9487;RSQ=0.3912;ERATE=0.0040;THETA=0.0008;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 145619411 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.990;LDAF=0.5151;AVGPOST=0.9844;RSQ=0.9736;ERATE=0.0039;THETA=0.0008;AC=1127;AN=2184 GT:DS:GL:BD 0.51602566 1 1 145619469 . AGT A 53 PASS INDEL;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5159;ERATE=0.0005;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145619476 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.946;BRSQ=0.871;LDAF=0.2569;AVGPOST=0.9448;RSQ=0.9045;ERATE=0.0085;THETA=0.0006;AC=564;AN=2184 GT:DS:GL:BD 0.25824177 0 1 145619757 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.798;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8748;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145620028 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.937;BRSQ=0.712;LDAF=0.1300;AVGPOST=0.9132;RSQ=0.6990;ERATE=0.0355;THETA=0.0026;AC=231;AN=2184 GT:DS:GL:BD 0.10576923 0 1 145620034 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.472;LDAF=0.0024;AVGPOST=0.9969;RSQ=0.5051;ERATE=0.0007;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145620123 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5011;ERATE=0.0004;THETA=0.0081;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145620137 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.880;LDAF=0.0443;AVGPOST=0.9894;RSQ=0.9065;ERATE=0.0009;THETA=0.0013;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 145620148 rs11318010 AG A 38750 PASS INDEL;BAVGPOST=0.961;BRSQ=0.851;LDAF=0.3500;AVGPOST=0.9557;RSQ=0.8680;ERATE=0.0503;THETA=0.0089;AC=753;AN=2184 GT:DS:GL:BD 0.34478021 0 1 145620427 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.940;LDAF=0.0224;AVGPOST=0.9974;RSQ=0.9482;ERATE=0.0006;THETA=0.0008;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 145620568 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0030;AVGPOST=0.9973;RSQ=0.6649;ERATE=0.0005;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145620637 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.843;LDAF=0.1240;AVGPOST=0.9732;RSQ=0.9127;ERATE=0.0016;THETA=0.0004;AC=267;AN=2184 GT:DS:GL:BD 0.12225275 0 1 145620787 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.933;BRSQ=0.870;LDAF=0.4377;AVGPOST=0.8985;RSQ=0.8382;ERATE=0.0370;THETA=0.0008;AC=943;AN=2184 GT:DS:GL:BD 0.43177655 0 1 145620857 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6569;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145621065 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.701;LDAF=0.0251;AVGPOST=0.9807;RSQ=0.7088;ERATE=0.0005;THETA=0.0010;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 145621120 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.973;LDAF=0.1565;AVGPOST=0.9915;RSQ=0.9749;ERATE=0.0005;THETA=0.0019;AC=342;AN=2184 GT:DS:GL:BD 0.15659341 0 1 145621420 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.725;LDAF=0.0016;AVGPOST=0.9982;RSQ=0.4941;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145621536 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5817;ERATE=0.0004;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145621920 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.720;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4876;ERATE=0.0006;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145622067 rs5777573 G GT 6169 PASS INDEL;BAVGPOST=0.886;BRSQ=0.680;LDAF=0.2596;AVGPOST=0.8108;RSQ=0.6096;ERATE=0.0249;THETA=0.0007;AC=453;AN=2184 GT:DS:GL:BD 0.20741758 0 1 145622259 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.860;BRSQ=0.737;LDAF=0.4358;AVGPOST=0.8427;RSQ=0.7341;ERATE=0.0258;THETA=0.0036;AC=980;AN=2184 GT:DS:GL:BD 0.44871795 0 1 145622454 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.915;BRSQ=0.458;LDAF=0.0981;AVGPOST=0.8912;RSQ=0.5102;ERATE=0.0208;THETA=0.0013;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 145622477 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.921;BRSQ=0.720;LDAF=0.8274;AVGPOST=0.8659;RSQ=0.6343;ERATE=0.0231;THETA=0.0009;AC=1887;AN=2184 GT:DS:GL:BD 0.86401099 1 1 145622800 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.597;LDAF=0.0213;AVGPOST=0.9840;RSQ=0.7048;ERATE=0.0009;THETA=0.0016;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 145622948 . G GA 198 PASS INDEL;BAVGPOST=0.998;BRSQ=0.806;LDAF=0.0029;AVGPOST=0.9979;RSQ=0.7169;ERATE=0.0004;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145623158 . GTA G 1229 PASS INDEL;BAVGPOST=0.660;BRSQ=0.167;LDAF=0.3027;AVGPOST=0.6419;RSQ=0.2714;ERATE=0.0548;THETA=0.0021;AC=369;AN=2184 GT:DS:GL:BD 0.16895604 0 1 145623180 . A AT 822 PASS INDEL;BAVGPOST=0.546;BRSQ=0.057;LDAF=0.7711;AVGPOST=0.6751;RSQ=0.2319;ERATE=0.0224;THETA=0.0059;AC=1959;AN=2184 GT:DS:GL:BD 0.89697802 1 1 145623190 . T TG 2061 PASS INDEL;BAVGPOST=0.626;BRSQ=0.147;LDAF=0.3207;AVGPOST=0.6537;RSQ=0.2927;ERATE=0.0452;THETA=0.0005;AC=446;AN=2184 GT:DS:GL:BD 0.20421246 0 1 145623792 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.3760;ERATE=0.0008;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145623904 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.980;LDAF=0.9647;AVGPOST=0.9952;RSQ=0.9494;ERATE=0.0004;THETA=0.0066;AC=2112;AN=2184 GT:DS:GL:BD 0.96703297 1 1 145624000 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.785;BRSQ=0.564;LDAF=0.3330;AVGPOST=0.7826;RSQ=0.6178;ERATE=0.0587;THETA=0.0007;AC=686;AN=2184 GT:DS:GL:BD 0.31410256 0 1 145624208 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.947;BRSQ=0.691;LDAF=0.8988;AVGPOST=0.9311;RSQ=0.7175;ERATE=0.0098;THETA=0.0006;AC=1999;AN=2184 GT:DS:GL:BD 0.91529304 1 1 145625873 . ACT A 38 PASS INDEL;BAVGPOST=0.998;BRSQ=0.576;LDAF=0.0055;AVGPOST=0.9917;RSQ=0.3977;ERATE=0.0004;THETA=0.0077;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145625966 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7573;ERATE=0.0003;THETA=0.0044;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145625979 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3979;AVGPOST=0.9961;RSQ=0.9940;ERATE=0.0007;THETA=0.0022;AC=865;AN=2184 GT:DS:GL:BD 0.39606228 0 1 145626099 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7206;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145626119 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5446;AVGPOST=0.9976;RSQ=0.9959;ERATE=0.0006;THETA=0.0004;AC=1192;AN=2184 GT:DS:GL:BD 0.54578757 1 1 145626173 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4826;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145626180 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.692;LDAF=0.0051;AVGPOST=0.9969;RSQ=0.7607;ERATE=0.0004;THETA=0.0032;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145626204 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145626523 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0172;AVGPOST=0.9994;RSQ=0.9854;ERATE=0.0004;THETA=0.0010;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 145626781 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.903;LDAF=0.0245;AVGPOST=0.9935;RSQ=0.9082;ERATE=0.0004;THETA=0.0003;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 145626856 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145626885 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145626906 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7094;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145627059 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1547;AVGPOST=0.9973;RSQ=0.9922;ERATE=0.0005;THETA=0.0003;AC=337;AN=2184 GT:DS:GL:BD 0.15430403 0 1 145627119 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145627123 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0033;AVGPOST=0.9987;RSQ=0.8414;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145627245 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5840;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145627546 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.701;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6265;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145627707 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0036;AVGPOST=0.9972;RSQ=0.6962;ERATE=0.0007;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145627784 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5914;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145627829 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145627906 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6771;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145627961 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145627972 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9562;ERATE=0.0004;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145628128 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.655;LDAF=0.0023;AVGPOST=0.9982;RSQ=0.6675;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145628131 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4931;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145628207 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.637;LDAF=0.0149;AVGPOST=0.9927;RSQ=0.8123;ERATE=0.0006;THETA=0.0006;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 145628222 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.436;LDAF=0.0059;AVGPOST=0.9917;RSQ=0.4976;ERATE=0.0005;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145628275 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8063;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145628311 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6776;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145628321 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145628327 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8786;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145628393 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5030;ERATE=0.0006;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145628433 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145628615 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.765;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7092;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145628762 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.728;LDAF=0.0022;AVGPOST=0.9982;RSQ=0.6210;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145628944 . T TG 18 PASS INDEL;BAVGPOST=0.998;BRSQ=0.485;LDAF=0.0029;AVGPOST=0.9968;RSQ=0.5591;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145629165 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6265;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145629472 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7512;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145629530 . CATA C 117 PASS INDEL;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4967;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145629640 . T TG 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.731;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.5914;ERATE=0.0006;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145629765 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1547;AVGPOST=0.9973;RSQ=0.9919;ERATE=0.0004;THETA=0.0006;AC=337;AN=2184 GT:DS:GL:BD 0.15430403 0 1 145629767 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3981;AVGPOST=0.9982;RSQ=0.9969;ERATE=0.0004;THETA=0.0010;AC=867;AN=2184 GT:DS:GL:BD 0.39697802 0 1 145629927 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8442;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145629993 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.882;LDAF=0.0213;AVGPOST=0.9915;RSQ=0.8608;ERATE=0.0004;THETA=0.0009;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 145630035 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.770;LDAF=0.9282;AVGPOST=0.9647;RSQ=0.8117;ERATE=0.0033;THETA=0.0006;AC=2038;AN=2184 GT:DS:GL:BD 0.93315017 1 1 145630111 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.847;LDAF=0.0105;AVGPOST=0.9965;RSQ=0.8623;ERATE=0.0006;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 145630168 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145630245 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145630377 . T TA 14 PASS INDEL;BAVGPOST=0.999;BRSQ=0.586;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5375;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145630473 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9665;AVGPOST=0.9997;RSQ=0.9959;ERATE=0.0003;THETA=0.0005;AC=2111;AN=2184 GT:DS:GL:BD 0.96657509 1 1 145630536 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2383;AVGPOST=0.9990;RSQ=0.9980;ERATE=0.0004;THETA=0.0004;AC=518;AN=2184 GT:DS:GL:BD 0.23717949 0 1 145630800 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3981;AVGPOST=0.9989;RSQ=0.9980;ERATE=0.0004;THETA=0.0006;AC=867;AN=2184 GT:DS:GL:BD 0.39697802 0 1 145630824 . TC T 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.677;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5266;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145630843 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145631095 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0147;AVGPOST=0.9993;RSQ=0.9817;ERATE=0.0004;THETA=0.0007;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 145631607 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.690;LDAF=0.0032;AVGPOST=0.9993;RSQ=0.8986;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145631817 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145631820 rs34429316 GA G 29191 PASS INDEL;BAVGPOST=0.995;BRSQ=0.989;LDAF=0.2346;AVGPOST=0.9975;RSQ=0.9948;ERATE=0.0005;THETA=0.0004;AC=510;AN=2184 GT:DS:GL:BD 0.23351648 0 1 145631949 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0170;AVGPOST=0.9997;RSQ=0.9936;ERATE=0.0003;THETA=0.0011;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 145632118 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.547;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145632136 . GA G 293 PASS INDEL;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0035;AVGPOST=0.9957;RSQ=0.5169;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145632206 . GCAT G 319 PASS INDEL;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7371;ERATE=0.0005;THETA=0.0019;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145632243 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145632310 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6040;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145632434 . GATAAA G 190 PASS INDEL;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0019;AVGPOST=0.9982;RSQ=0.6634;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145632500 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2353;AVGPOST=0.9984;RSQ=0.9967;ERATE=0.0004;THETA=0.0004;AC=511;AN=2184 GT:DS:GL:BD 0.23397435 0 1 145632502 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.7964;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145632674 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9998;RSQ=0.9626;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145632764 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0042;AVGPOST=0.9992;RSQ=0.9152;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145632780 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7076;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145632810 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.729;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6308;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145632948 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145633004 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.733;LDAF=0.0036;AVGPOST=0.9995;RSQ=0.9412;ERATE=0.0004;THETA=0.0027;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145633101 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6141;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145633108 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.919;LDAF=0.0138;AVGPOST=0.9984;RSQ=0.9518;ERATE=0.0004;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 145633166 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8653;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145633187 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.938;LDAF=0.5328;AVGPOST=0.9777;RSQ=0.9676;ERATE=0.0015;THETA=0.0005;AC=1175;AN=2184 GT:DS:GL:BD 0.53800368 1 1 145633360 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3986;AVGPOST=0.9978;RSQ=0.9961;ERATE=0.0005;THETA=0.0012;AC=867;AN=2184 GT:DS:GL:BD 0.39697802 0 1 145633449 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6954;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145633535 . C CT 38 PASS INDEL;BAVGPOST=0.993;BRSQ=0.468;LDAF=0.0086;AVGPOST=0.9889;RSQ=0.4804;ERATE=0.0040;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145633539 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7415;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145633548 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0064;AVGPOST=0.9987;RSQ=0.9060;ERATE=0.0004;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 145633562 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6710;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145633569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0032;AVGPOST=0.9980;RSQ=0.7627;ERATE=0.0005;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145633600 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.691;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4227;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145633723 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.852;LDAF=0.0072;AVGPOST=0.9966;RSQ=0.8069;ERATE=0.0004;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 145633741 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.828;LDAF=0.0194;AVGPOST=0.9964;RSQ=0.9237;ERATE=0.0005;THETA=0.0012;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 145633775 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8654;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145633804 . A AT 114 PASS INDEL;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.5607;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145633887 . C CT 322 PASS INDEL;BAVGPOST=0.990;BRSQ=0.555;LDAF=0.0161;AVGPOST=0.9815;RSQ=0.5491;ERATE=0.0058;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 145633916 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.585;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8441;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145633917 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5882;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145633923 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0056;AVGPOST=0.9989;RSQ=0.9187;ERATE=0.0006;THETA=0.0059;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145634111 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.754;LDAF=0.0042;AVGPOST=0.9993;RSQ=0.9267;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145634113 . AT A 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5389;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145634124 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0129;AVGPOST=0.9987;RSQ=0.9647;ERATE=0.0004;THETA=0.0009;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 145634151 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8725;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145634338 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5469;AVGPOST=0.9983;RSQ=0.9972;ERATE=0.0004;THETA=0.0012;AC=1198;AN=2184 GT:DS:GL:BD 0.54853481 1 1 145634401 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0048;AVGPOST=0.9994;RSQ=0.9587;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145634430 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.792;LDAF=0.0050;AVGPOST=0.9975;RSQ=0.7964;ERATE=0.0007;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145634490 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1369;AVGPOST=0.9991;RSQ=0.9966;ERATE=0.0003;THETA=0.0008;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 145634596 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145634649 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5436;AVGPOST=0.9960;RSQ=0.9934;ERATE=0.0007;THETA=0.0009;AC=1192;AN=2184 GT:DS:GL:BD 0.54578757 1 1 145634683 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145634748 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.731;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145634763 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8316;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145634856 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.671;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5826;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145634883 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6532;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145634906 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7195;ERATE=0.0002;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145634954 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145634957 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145635110 . T TTAA 320 PASS INDEL;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.6907;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145635159 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6904;ERATE=0.0005;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145635202 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1376;AVGPOST=0.9973;RSQ=0.9905;ERATE=0.0004;THETA=0.0002;AC=299;AN=2184 GT:DS:GL:BD 0.13690476 0 1 145635236 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.785;LDAF=0.0061;AVGPOST=0.9984;RSQ=0.8835;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 145635314 . C CA 86 PASS INDEL;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5326;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145635321 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5569;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145635337 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.969;LDAF=0.0220;AVGPOST=0.9981;RSQ=0.9642;ERATE=0.0004;THETA=0.0005;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 145635340 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0082;AVGPOST=0.9991;RSQ=0.9571;ERATE=0.0002;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145635409 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0165;AVGPOST=0.9990;RSQ=0.9755;ERATE=0.0003;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 145635522 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6819;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145635523 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145635619 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6802;ERATE=0.0007;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145635620 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7263;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145635768 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.665;LDAF=0.0037;AVGPOST=0.9937;RSQ=0.3088;ERATE=0.0006;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145635822 . GT G 525 PASS INDEL;BAVGPOST=0.995;BRSQ=0.617;LDAF=0.0122;AVGPOST=0.9870;RSQ=0.6068;ERATE=0.0007;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145635990 . T TA 1187 PASS INDEL;BAVGPOST=0.812;BRSQ=0.281;LDAF=0.2252;AVGPOST=0.7247;RSQ=0.3209;ERATE=0.0470;THETA=0.0010;AC=232;AN=2184 GT:DS:GL:BD 0.10622711 0 1 145636001 . AG A 44938 PASS INDEL;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.9657;AVGPOST=0.9978;RSQ=0.9733;ERATE=0.0006;THETA=0.0004;AC=2111;AN=2184 GT:DS:GL:BD 0.96657509 1 1 145636059 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0038;AVGPOST=0.9987;RSQ=0.8695;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145636226 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2386;AVGPOST=0.9972;RSQ=0.9940;ERATE=0.0006;THETA=0.0008;AC=518;AN=2184 GT:DS:GL:BD 0.23717949 0 1 145636234 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0030;AVGPOST=0.9986;RSQ=0.8038;ERATE=0.0002;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145636254 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.694;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5258;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145636326 . TC T 317 PASS INDEL;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0071;AVGPOST=0.9977;RSQ=0.8735;ERATE=0.0006;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 145636508 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.788;LDAF=0.0024;AVGPOST=0.9990;RSQ=0.8242;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145636549 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145636589 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145636713 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5256;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145636732 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.6905;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145636760 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7234;ERATE=0.0008;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145636770 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0005;AVGPOST=0.9992;RSQ=0.3684;ERATE=0.0002;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 145636908 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3975;AVGPOST=0.9977;RSQ=0.9960;ERATE=0.0006;THETA=0.0006;AC=866;AN=2184 GT:DS:GL:BD 0.39652014 0 1 145636968 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9902;ERATE=0.0002;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145637048 . TAGAA T 1457 PASS INDEL;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0080;AVGPOST=0.9996;RSQ=0.9801;ERATE=0.0002;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145637057 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145637077 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.7030;ERATE=0.0002;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145637108 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0036;AVGPOST=0.9983;RSQ=0.8348;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145637221 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145637242 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0124;AVGPOST=0.9992;RSQ=0.9753;ERATE=0.0004;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 145637262 . CAG C 395 PASS INDEL;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0023;AVGPOST=0.9992;RSQ=0.8601;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145637269 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0039;AVGPOST=0.9988;RSQ=0.8834;ERATE=0.0004;THETA=0.0023;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145637306 . ATTC A 146 PASS INDEL;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.7289;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145637515 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8631;ERATE=0.0003;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145637568 . T TA 33 PASS INDEL;BAVGPOST=0.994;BRSQ=0.234;LDAF=0.0453;AVGPOST=0.9421;RSQ=0.5269;ERATE=0.0025;THETA=0.0010;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 145637663 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0034;AVGPOST=0.9985;RSQ=0.8086;ERATE=0.0013;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145637708 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.848;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8689;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145637708 . AC A 447 PASS INDEL;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8366;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145637764 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.932;LDAF=0.0125;AVGPOST=0.9985;RSQ=0.9498;ERATE=0.0005;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 145637857 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.9064;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145638023 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5443;AVGPOST=0.9980;RSQ=0.9969;ERATE=0.0010;THETA=0.0004;AC=1190;AN=2184 GT:DS:GL:BD 0.54487181 1 1 145638184 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8225;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145638221 . GA G 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7794;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145638289 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5554;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145638317 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6525;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145638389 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0039;AVGPOST=0.9992;RSQ=0.9296;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145638402 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8136;ERATE=0.0002;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145638490 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1378;AVGPOST=0.9973;RSQ=0.9914;ERATE=0.0004;THETA=0.0005;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 145638542 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1553;AVGPOST=0.9957;RSQ=0.9882;ERATE=0.0005;THETA=0.0004;AC=340;AN=2184 GT:DS:GL:BD 0.15567766 0 1 145638576 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5782;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145638705 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145638824 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0004;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145638995 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.980;LDAF=0.0219;AVGPOST=0.9976;RSQ=0.9579;ERATE=0.0004;THETA=0.0005;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 145639167 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145639248 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0120;AVGPOST=0.9988;RSQ=0.9609;ERATE=0.0002;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 145639324 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2347;AVGPOST=0.9983;RSQ=0.9964;ERATE=0.0002;THETA=0.0006;AC=509;AN=2184 GT:DS:GL:BD 0.23305860 0 1 145639433 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9995;RSQ=0.9394;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145639522 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6622;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145639528 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.947;LDAF=0.9649;AVGPOST=0.9962;RSQ=0.9611;ERATE=0.0007;THETA=0.0005;AC=2110;AN=2184 GT:DS:GL:BD 0.96611720 1 1 145639597 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0004;THETA=0.0030;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145639680 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.735;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145639717 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4780;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145639731 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.610;LDAF=0.0034;AVGPOST=0.9974;RSQ=0.7134;ERATE=0.0005;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145639734 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1376;AVGPOST=0.9982;RSQ=0.9937;ERATE=0.0004;THETA=0.0004;AC=300;AN=2184 GT:DS:GL:BD 0.13736264 0 1 145639794 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4968;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145639848 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5165;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145639875 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145639895 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4746;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145640127 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.728;LDAF=0.0037;AVGPOST=0.9966;RSQ=0.6255;ERATE=0.0005;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145640157 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.987;LDAF=0.2345;AVGPOST=0.9964;RSQ=0.9919;ERATE=0.0006;THETA=0.0005;AC=509;AN=2184 GT:DS:GL:BD 0.23305860 0 1 145640169 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.668;LDAF=0.0146;AVGPOST=0.9854;RSQ=0.6274;ERATE=0.0010;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 145640203 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.6911;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145640230 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.602;LDAF=0.0013;AVGPOST=0.9981;RSQ=0.3396;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145640246 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0036;AVGPOST=0.9976;RSQ=0.7475;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145640350 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.685;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7458;ERATE=0.0003;THETA=0.0028;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145640373 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145640376 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0170;AVGPOST=0.9998;RSQ=0.9937;ERATE=0.0003;THETA=0.0006;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 145640394 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6769;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145640481 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.756;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5105;ERATE=0.0009;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145640491 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.3966;AVGPOST=0.9955;RSQ=0.9929;ERATE=0.0007;THETA=0.0010;AC=866;AN=2184 GT:DS:GL:BD 0.39652014 0 1 145640528 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.947;LDAF=0.3796;AVGPOST=0.9622;RSQ=0.9392;ERATE=0.0112;THETA=0.0009;AC=842;AN=2184 GT:DS:GL:BD 0.38553113 0 1 145640592 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.5430;AVGPOST=0.9916;RSQ=0.9864;ERATE=0.0021;THETA=0.0004;AC=1191;AN=2184 GT:DS:GL:BD 0.54532969 1 1 145640626 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7023;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145640781 . ATTTAAC A 127 PASS INDEL;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8136;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145640799 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145640844 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145640887 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.650;LDAF=0.0035;AVGPOST=0.9963;RSQ=0.5982;ERATE=0.0006;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145640993 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.750;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5073;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145641075 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.959;BRSQ=0.803;LDAF=0.9026;AVGPOST=0.9547;RSQ=0.8177;ERATE=0.0058;THETA=0.0004;AC=1989;AN=2184 GT:DS:GL:BD 0.91071427 1 1 145641117 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.771;LDAF=0.0046;AVGPOST=0.9963;RSQ=0.6786;ERATE=0.0007;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145641300 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9997;RSQ=0.9750;ERATE=0.0002;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145641380 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145641395 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1365;AVGPOST=0.9994;RSQ=0.9977;ERATE=0.0003;THETA=0.0006;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 145641528 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6745;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145641533 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7061;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145641576 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8315;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145641638 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.618;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5249;ERATE=0.0005;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145641692 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145641730 . CAT C 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5673;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145641734 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9667;ERATE=0.0002;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145641776 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145641777 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145641885 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1581;AVGPOST=0.9973;RSQ=0.9914;ERATE=0.0004;THETA=0.0006;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 145642036 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0033;AVGPOST=0.9980;RSQ=0.7821;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145642086 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9995;RSQ=0.9569;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145642394 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0036;AVGPOST=0.9987;RSQ=0.8573;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145642537 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.806;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.6819;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145642604 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.5693;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145642629 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8198;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145642665 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5838;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145642681 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0009;AVGPOST=0.9988;RSQ=0.4465;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145642783 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=0.9993;RSQ=0.8754;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145643068 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4867;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145643073 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0176;AVGPOST=0.9986;RSQ=0.9647;ERATE=0.0004;THETA=0.0013;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 145643381 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9221;ERATE=0.0004;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145643407 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0021;AVGPOST=0.9988;RSQ=0.7788;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145643452 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.863;LDAF=0.0066;AVGPOST=0.9986;RSQ=0.9126;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 145643555 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.764;LDAF=0.0200;AVGPOST=0.9887;RSQ=0.7756;ERATE=0.0009;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 145643571 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.948;LDAF=0.1618;AVGPOST=0.9905;RSQ=0.9731;ERATE=0.0008;THETA=0.0007;AC=348;AN=2184 GT:DS:GL:BD 0.15934066 0 1 145643612 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.622;LDAF=0.9449;AVGPOST=0.9506;RSQ=0.6394;ERATE=0.0049;THETA=0.0039;AC=2085;AN=2184 GT:DS:GL:BD 0.95467031 1 1 145643694 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145643788 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5926;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145643810 . G GA 160 PASS INDEL;BAVGPOST=0.999;BRSQ=0.618;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5218;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145643945 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.986;LDAF=0.5605;AVGPOST=0.9926;RSQ=0.9885;ERATE=0.0011;THETA=0.0005;AC=1229;AN=2184 GT:DS:GL:BD 0.56272894 1 1 145643960 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.9250;ERATE=0.0003;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145644070 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.543;LDAF=0.0031;AVGPOST=0.9965;RSQ=0.5060;ERATE=0.0007;THETA=0.0034;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145644174 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1376;AVGPOST=0.9972;RSQ=0.9903;ERATE=0.0004;THETA=0.0007;AC=299;AN=2184 GT:DS:GL:BD 0.13690476 0 1 145644202 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.988;LDAF=0.5465;AVGPOST=0.9824;RSQ=0.9726;ERATE=0.0041;THETA=0.0003;AC=1194;AN=2184 GT:DS:GL:BD 0.54670328 1 1 145644211 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.5625;AVGPOST=0.9952;RSQ=0.9923;ERATE=0.0004;THETA=0.0007;AC=1230;AN=2184 GT:DS:GL:BD 0.56318682 1 1 145644287 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5790;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145644328 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6952;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145644461 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.814;LDAF=0.0045;AVGPOST=0.9982;RSQ=0.8211;ERATE=0.0006;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145644613 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145644631 . T TA 94 PASS INDEL;BAVGPOST=0.989;BRSQ=0.467;LDAF=0.0244;AVGPOST=0.9658;RSQ=0.4359;ERATE=0.0055;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 145644782 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.666;LDAF=0.0040;AVGPOST=0.9929;RSQ=0.3999;ERATE=0.0005;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145644830 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0033;AVGPOST=0.9943;RSQ=0.2205;ERATE=0.0012;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145644927 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145644932 . CAAAT C 156 PASS INDEL;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7361;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145644984 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2387;AVGPOST=0.9968;RSQ=0.9931;ERATE=0.0004;THETA=0.0009;AC=518;AN=2184 GT:DS:GL:BD 0.23717949 0 1 145645048 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.5436;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145645086 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8750;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145645278 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0059;AVGPOST=0.9918;RSQ=0.4629;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145645606 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.956;LDAF=0.2267;AVGPOST=0.9868;RSQ=0.9737;ERATE=0.0007;THETA=0.0008;AC=495;AN=2184 GT:DS:GL:BD 0.22664835 0 1 145645658 . C CA 700 PASS INDEL;BAVGPOST=0.974;BRSQ=0.598;LDAF=0.0488;AVGPOST=0.9431;RSQ=0.5189;ERATE=0.0104;THETA=0.0007;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 145645715 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0033;AVGPOST=0.9979;RSQ=0.7127;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145645820 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2376;AVGPOST=0.9979;RSQ=0.9956;ERATE=0.0003;THETA=0.0008;AC=518;AN=2184 GT:DS:GL:BD 0.23717949 0 1 145645843 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0043;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145645881 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1368;AVGPOST=0.9993;RSQ=0.9975;ERATE=0.0003;THETA=0.0004;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 145645967 . G GA 695 PASS INDEL;BAVGPOST=0.944;BRSQ=0.553;LDAF=0.1013;AVGPOST=0.8923;RSQ=0.4935;ERATE=0.0376;THETA=0.0006;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 145646021 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145646239 . CTGAG C 44 PASS INDEL;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5845;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145646240 . T TG 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.729;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5286;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145646291 . TGA T 79 PASS INDEL;BAVGPOST=0.988;BRSQ=0.681;LDAF=0.0242;AVGPOST=0.9748;RSQ=0.5676;ERATE=0.0112;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 145646380 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=0.9999;RSQ=0.9913;ERATE=0.0002;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145646407 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0019;AVGPOST=0.9992;RSQ=0.8494;ERATE=0.0015;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145646539 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0056;AVGPOST=0.9986;RSQ=0.9020;ERATE=0.0002;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145646566 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145646606 . AC A 54 PASS INDEL;BAVGPOST=0.999;BRSQ=0.642;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.3295;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145646644 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7133;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145646645 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1539;AVGPOST=0.9986;RSQ=0.9958;ERATE=0.0002;THETA=0.0009;AC=336;AN=2184 GT:DS:GL:BD 0.15384616 0 1 145646647 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145646702 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6897;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145646788 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145646808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.655;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5938;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145646810 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.728;LDAF=0.0042;AVGPOST=0.9967;RSQ=0.7079;ERATE=0.0009;THETA=0.0043;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145647167 . ATCTTTTT A 67 PASS INDEL;BAVGPOST=0.999;BRSQ=0.650;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.3947;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145647177 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4951;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145647272 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.730;LDAF=0.0079;AVGPOST=0.9953;RSQ=0.7521;ERATE=0.0006;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 145647388 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0176;AVGPOST=0.9985;RSQ=0.9597;ERATE=0.0005;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 145647540 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.651;LDAF=0.0037;AVGPOST=0.9979;RSQ=0.7351;ERATE=0.0005;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145647730 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.764;LDAF=0.0082;AVGPOST=0.9957;RSQ=0.7889;ERATE=0.0004;THETA=0.0011;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 145647767 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3971;AVGPOST=0.9939;RSQ=0.9900;ERATE=0.0005;THETA=0.0007;AC=865;AN=2184 GT:DS:GL:BD 0.39606228 0 1 145647832 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0018;AVGPOST=0.9976;RSQ=0.5120;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145647912 . AC A 73 PASS INDEL;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145648046 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0126;AVGPOST=0.9988;RSQ=0.9728;ERATE=0.0002;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 145648158 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0035;AVGPOST=0.9984;RSQ=0.8365;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145648272 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0074;AVGPOST=0.9996;RSQ=0.9790;ERATE=0.0004;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 145648331 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6745;ERATE=0.0002;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145648421 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145648485 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0056;AVGPOST=0.9997;RSQ=0.9790;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145648592 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145648611 . ACT A 50 PASS INDEL;BAVGPOST=1.000;BRSQ=0.757;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6159;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145648636 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0113;AVGPOST=0.9993;RSQ=0.9745;ERATE=0.0004;THETA=0.0012;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 145648651 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1365;AVGPOST=0.9993;RSQ=0.9972;ERATE=0.0002;THETA=0.0004;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 145648653 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0026;AVGPOST=0.9989;RSQ=0.8447;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145648996 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0053;AVGPOST=0.9990;RSQ=0.9231;ERATE=0.0004;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145649011 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145649087 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9824;ERATE=0.0002;THETA=0.0012;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145649331 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7618;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145649339 . GACTA G 2651 PASS INDEL;BAVGPOST=0.993;BRSQ=0.766;LDAF=0.0147;AVGPOST=0.9951;RSQ=0.8609;ERATE=0.0004;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 145649492 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0017;AVGPOST=0.9995;RSQ=0.9059;ERATE=0.0002;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145649520 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145649600 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145649746 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145649889 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8872;ERATE=0.0002;THETA=0.0026;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145649919 rs77541409 CTT C 21631 PASS INDEL;BAVGPOST=0.958;BRSQ=0.842;LDAF=0.1335;AVGPOST=0.9712;RSQ=0.9193;ERATE=0.0008;THETA=0.0037;AC=280;AN=2184 GT:DS:GL:BD 0.12820514 0 1 145650055 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0039;AVGPOST=0.9992;RSQ=0.9168;ERATE=0.0002;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145650458 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145650499 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145650614 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145650894 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6651;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145650928 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8237;ERATE=0.0010;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145650963 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5578;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145651018 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0002;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145651039 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145651066 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.922;LDAF=0.0256;AVGPOST=0.9986;RSQ=0.9748;ERATE=0.0002;THETA=0.0007;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 145651213 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9584;AVGPOST=0.9985;RSQ=0.9868;ERATE=0.0004;THETA=0.0006;AC=2094;AN=2184 GT:DS:GL:BD 0.95879120 1 1 145651246 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.920;BRSQ=0.809;LDAF=0.7032;AVGPOST=0.8802;RSQ=0.7736;ERATE=0.0378;THETA=0.0005;AC=1579;AN=2184 GT:DS:GL:BD 0.72298533 1 1 145651409 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.9587;AVGPOST=0.9980;RSQ=0.9833;ERATE=0.0004;THETA=0.0006;AC=2095;AN=2184 GT:DS:GL:BD 0.95924908 1 1 145651461 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.803;LDAF=0.0052;AVGPOST=0.9974;RSQ=0.8173;ERATE=0.0004;THETA=0.0013;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145651525 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6525;ERATE=0.0002;THETA=0.0053;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145651526 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8519;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145651795 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7265;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145651857 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6707;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145651861 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2334;AVGPOST=0.9963;RSQ=0.9929;ERATE=0.0004;THETA=0.0003;AC=509;AN=2184 GT:DS:GL:BD 0.23305860 0 1 145651876 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.990;LDAF=0.2332;AVGPOST=0.9956;RSQ=0.9916;ERATE=0.0002;THETA=0.0011;AC=509;AN=2184 GT:DS:GL:BD 0.23305860 0 1 145651946 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0065;AVGPOST=0.9931;RSQ=0.5993;ERATE=0.0004;THETA=0.0022;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145651964 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.983;LDAF=0.5365;AVGPOST=0.9833;RSQ=0.9764;ERATE=0.0009;THETA=0.0007;AC=1178;AN=2184 GT:DS:GL:BD 0.53937727 1 1 145652141 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.1580;AVGPOST=0.9958;RSQ=0.9872;ERATE=0.0004;THETA=0.0006;AC=343;AN=2184 GT:DS:GL:BD 0.15705128 0 1 145652399 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.850;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8476;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145652433 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6694;ERATE=0.0002;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145652466 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6415;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145652572 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0012;AVGPOST=0.9996;RSQ=0.8610;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145652626 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0047;AVGPOST=0.9990;RSQ=0.9145;ERATE=0.0004;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145652774 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145653064 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0054;AVGPOST=0.9986;RSQ=0.8946;ERATE=0.0005;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145653091 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.447;LDAF=0.0017;AVGPOST=0.9979;RSQ=0.5115;ERATE=0.0006;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145653219 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0040;AVGPOST=0.9992;RSQ=0.9225;ERATE=0.0002;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145653232 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0021;AVGPOST=0.9967;RSQ=0.4586;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145653277 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7969;ERATE=0.0002;THETA=0.0001;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145653349 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9073;ERATE=0.0002;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145653499 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6309;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145653524 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0029;AVGPOST=0.9984;RSQ=0.7909;ERATE=0.0003;THETA=0.0030;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145653531 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0002;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145653642 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145653913 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.4779;ERATE=0.0006;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145653920 . T TA 133 PASS INDEL;BAVGPOST=0.998;BRSQ=0.687;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6592;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145653950 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0017;AVGPOST=0.9987;RSQ=0.6963;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145654392 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5991;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145654436 rs10710160 C CT 378 PASS INDEL;BAVGPOST=0.538;BRSQ=0.063;LDAF=0.2815;AVGPOST=0.6715;RSQ=0.3102;ERATE=0.0212;THETA=0.0009;AC=384;AN=2184 GT:DS:GL:BD 0.17582418 0 1 145654602 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.824;LDAF=0.0058;AVGPOST=0.9965;RSQ=0.7303;ERATE=0.0007;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145654737 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0051;AVGPOST=0.9995;RSQ=0.9573;ERATE=0.0003;THETA=0.0014;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145654983 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.526;LDAF=0.0049;AVGPOST=0.9961;RSQ=0.6531;ERATE=0.0009;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145655116 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5018;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145655256 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.937;LDAF=0.1379;AVGPOST=0.9893;RSQ=0.9659;ERATE=0.0009;THETA=0.0005;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 145655528 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9490;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145655570 . CT C 67 PASS INDEL;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4734;ERATE=0.0006;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145655611 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9260;ERATE=0.0002;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145655612 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5706;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145655691 . A AC 20 PASS INDEL;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0030;AVGPOST=0.9968;RSQ=0.5868;ERATE=0.0006;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145655747 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8622;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145655786 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145655787 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.637;LDAF=0.0029;AVGPOST=0.9976;RSQ=0.6804;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145655961 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6580;ERATE=0.0007;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145655974 . T TTA 82 PASS INDEL;BAVGPOST=1.000;BRSQ=0.748;LDAF=0.0052;AVGPOST=0.9913;RSQ=0.3603;ERATE=0.0004;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145656178 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8148;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145656236 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8696;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145656238 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7748;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145656403 . A AT 203 PASS INDEL;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.8031;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145656440 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145656484 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0020;AVGPOST=0.9980;RSQ=0.6041;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145656575 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3966;AVGPOST=0.9935;RSQ=0.9888;ERATE=0.0014;THETA=0.0008;AC=865;AN=2184 GT:DS:GL:BD 0.39606228 0 1 145656716 . T TA 258 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9977;RSQ=0.7617;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145656779 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145656786 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.836;LDAF=0.0137;AVGPOST=0.9963;RSQ=0.8903;ERATE=0.0004;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 145656800 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0017;AVGPOST=0.9979;RSQ=0.5238;ERATE=0.0005;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145657335 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0007;AVGPOST=0.9989;RSQ=0.3365;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145657512 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.739;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5911;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145657530 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6637;ERATE=0.0002;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145657574 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0030;AVGPOST=0.9993;RSQ=0.9133;ERATE=0.0004;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145657591 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6380;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145657671 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5699;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145657683 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6043;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145657708 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5438;AVGPOST=0.9930;RSQ=0.9891;ERATE=0.0012;THETA=0.0006;AC=1190;AN=2184 GT:DS:GL:BD 0.54487181 1 1 145657712 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6996;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145657792 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4839;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145657886 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0021;AVGPOST=0.9991;RSQ=0.7992;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145657926 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6337;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145658091 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145658177 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145658287 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5004;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145658382 . CG C 349 PASS INDEL;BAVGPOST=0.998;BRSQ=0.748;LDAF=0.0055;AVGPOST=0.9958;RSQ=0.7064;ERATE=0.0004;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145658419 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.549;LDAF=0.0014;AVGPOST=0.9979;RSQ=0.3624;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145658685 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0040;AVGPOST=0.9940;RSQ=0.3850;ERATE=0.0018;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145658838 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.981;LDAF=0.9574;AVGPOST=0.9958;RSQ=0.9629;ERATE=0.0007;THETA=0.0005;AC=2093;AN=2184 GT:DS:GL:BD 0.95833331 1 1 145658988 . C CG 243 PASS INDEL;BAVGPOST=0.898;BRSQ=0.290;LDAF=0.0713;AVGPOST=0.9078;RSQ=0.4754;ERATE=0.0052;THETA=0.0005;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 145659037 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.690;LDAF=0.0127;AVGPOST=0.9953;RSQ=0.8507;ERATE=0.0010;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 145659129 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.457;LDAF=0.0115;AVGPOST=0.9830;RSQ=0.4205;ERATE=0.0020;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145659297 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.639;LDAF=0.0066;AVGPOST=0.9935;RSQ=0.6038;ERATE=0.0008;THETA=0.0011;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145659301 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.653;LDAF=0.0149;AVGPOST=0.9900;RSQ=0.7494;ERATE=0.0005;THETA=0.0007;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 145659309 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.643;LDAF=0.0061;AVGPOST=0.9975;RSQ=0.8461;ERATE=0.0004;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145659313 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.712;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.7937;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145659927 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5672;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145660048 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.878;LDAF=0.0286;AVGPOST=0.9913;RSQ=0.8680;ERATE=0.0012;THETA=0.0011;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 145660108 . GC G 137 PASS INDEL;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7454;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145660153 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9984;RSQ=0.7852;ERATE=0.0005;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145660259 . TAGAA T 457 PASS INDEL;BAVGPOST=0.998;BRSQ=0.768;LDAF=0.0052;AVGPOST=0.9953;RSQ=0.6348;ERATE=0.0010;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145660401 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.650;LDAF=0.0122;AVGPOST=0.9937;RSQ=0.7849;ERATE=0.0008;THETA=0.0016;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 145660492 . A AG 32 PASS INDEL;BAVGPOST=0.999;BRSQ=0.612;LDAF=0.0034;AVGPOST=0.9941;RSQ=0.3007;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145660549 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.775;LDAF=0.0052;AVGPOST=0.9968;RSQ=0.7331;ERATE=0.0005;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145660660 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.817;LDAF=0.0052;AVGPOST=0.9970;RSQ=0.7628;ERATE=0.0005;THETA=0.0037;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145660663 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.2390;AVGPOST=0.9903;RSQ=0.9811;ERATE=0.0008;THETA=0.0009;AC=518;AN=2184 GT:DS:GL:BD 0.23717949 0 1 145660743 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.738;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7654;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145660744 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.743;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145660930 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5741;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145660952 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0023;AVGPOST=0.9997;RSQ=0.9439;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145660967 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145661100 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7425;ERATE=0.0003;THETA=0.0025;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145661157 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145661313 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2357;AVGPOST=0.9980;RSQ=0.9959;ERATE=0.0004;THETA=0.0008;AC=512;AN=2184 GT:DS:GL:BD 0.23443224 0 1 145661318 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6457;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145661443 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.9567;AVGPOST=0.9983;RSQ=0.9847;ERATE=0.0008;THETA=0.0006;AC=2090;AN=2184 GT:DS:GL:BD 0.95695972 1 1 145661596 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0050;AVGPOST=0.9986;RSQ=0.8960;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145661603 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.637;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5285;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145661719 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.793;LDAF=0.0023;AVGPOST=0.9978;RSQ=0.6193;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145661787 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.391;LDAF=0.0025;AVGPOST=0.9966;RSQ=0.4664;ERATE=0.0012;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145661867 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.739;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5188;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145661897 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.815;LDAF=0.0078;AVGPOST=0.9971;RSQ=0.8527;ERATE=0.0005;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 145661932 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.916;LDAF=0.1176;AVGPOST=0.9888;RSQ=0.9633;ERATE=0.0006;THETA=0.0021;AC=251;AN=2184 GT:DS:GL:BD 0.11492674 0 1 145662105 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8450;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145662256 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8889;ERATE=0.0002;THETA=0.0049;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145662364 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8470;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145662402 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6841;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145662607 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145662653 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145662666 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2353;AVGPOST=0.9978;RSQ=0.9952;ERATE=0.0006;THETA=0.0004;AC=510;AN=2184 GT:DS:GL:BD 0.23351648 0 1 145662699 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0040;AVGPOST=0.9990;RSQ=0.8919;ERATE=0.0006;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145662853 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2411;AVGPOST=0.9948;RSQ=0.9903;ERATE=0.0007;THETA=0.0006;AC=524;AN=2184 GT:DS:GL:BD 0.23992674 0 1 145663297 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0002;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145663322 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145663499 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0179;AVGPOST=0.9998;RSQ=0.9954;ERATE=0.0004;THETA=0.0034;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 145663537 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0325;AVGPOST=0.9995;RSQ=0.9934;ERATE=0.0004;THETA=0.0008;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 145663547 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0050;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145663560 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0004;AVGPOST=0.9996;RSQ=0.5850;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145663698 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6380;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145663760 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6009;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145663817 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1541;AVGPOST=0.9997;RSQ=0.9988;ERATE=0.0004;THETA=0.0005;AC=336;AN=2184 GT:DS:GL:BD 0.15384616 0 1 145663859 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7878;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145663958 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.5440;AVGPOST=0.9968;RSQ=0.9949;ERATE=0.0003;THETA=0.0006;AC=1191;AN=2184 GT:DS:GL:BD 0.54532969 1 1 145663993 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8198;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145664178 . ATGTT A 144 PASS INDEL;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145664332 . C CTT 33 PASS INDEL;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4867;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145664376 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.843;LDAF=0.0073;AVGPOST=0.9989;RSQ=0.9420;ERATE=0.0004;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 145664416 . CAG C 10583 PASS INDEL;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1517;AVGPOST=0.9982;RSQ=0.9940;ERATE=0.0005;THETA=0.0004;AC=331;AN=2184 GT:DS:GL:BD 0.15155677 0 1 145664437 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1518;AVGPOST=0.9990;RSQ=0.9968;ERATE=0.0003;THETA=0.0006;AC=331;AN=2184 GT:DS:GL:BD 0.15155677 0 1 145664576 . CT C 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145664768 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6404;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145665256 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1517;AVGPOST=0.9989;RSQ=0.9965;ERATE=0.0003;THETA=0.0004;AC=331;AN=2184 GT:DS:GL:BD 0.15155677 0 1 145665295 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.566;LDAF=0.0177;AVGPOST=0.9803;RSQ=0.5571;ERATE=0.0043;THETA=0.0011;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 145665308 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8523;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145665314 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8316;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145665480 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0019;AVGPOST=0.9975;RSQ=0.5303;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145665644 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.740;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4944;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145665769 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0033;AVGPOST=0.9988;RSQ=0.8335;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145665845 rs76106615 CAGAG C 38 PASS INDEL;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4351;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145665911 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.672;LDAF=0.0044;AVGPOST=0.9974;RSQ=0.7818;ERATE=0.0005;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145665917 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0007;AVGPOST=0.9992;RSQ=0.4526;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145665950 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3964;AVGPOST=0.9961;RSQ=0.9933;ERATE=0.0006;THETA=0.0005;AC=865;AN=2184 GT:DS:GL:BD 0.39606228 0 1 145666020 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.601;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7136;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145666248 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7330;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145666375 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0044;AVGPOST=0.9985;RSQ=0.8936;ERATE=0.0008;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145666483 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6846;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145666548 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.646;LDAF=0.0054;AVGPOST=0.9980;RSQ=0.8385;ERATE=0.0006;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145666616 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6069;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145666630 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5428;AVGPOST=0.9954;RSQ=0.9920;ERATE=0.0008;THETA=0.0005;AC=1190;AN=2184 GT:DS:GL:BD 0.54487181 1 1 145666719 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.2340;AVGPOST=0.9974;RSQ=0.9940;ERATE=0.0006;THETA=0.0005;AC=509;AN=2184 GT:DS:GL:BD 0.23305860 0 1 145666756 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0151;AVGPOST=0.9990;RSQ=0.9707;ERATE=0.0003;THETA=0.0006;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 145667045 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0016;AVGPOST=0.9981;RSQ=0.5102;ERATE=0.0004;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145667058 . GCTCCCT G 463 PASS INDEL;BAVGPOST=0.988;BRSQ=0.467;LDAF=0.0177;AVGPOST=0.9809;RSQ=0.5989;ERATE=0.0006;THETA=0.0006;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 145667088 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2343;AVGPOST=0.9961;RSQ=0.9916;ERATE=0.0004;THETA=0.0007;AC=510;AN=2184 GT:DS:GL:BD 0.23351648 0 1 145667098 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.646;LDAF=0.0153;AVGPOST=0.9949;RSQ=0.8608;ERATE=0.0006;THETA=0.0010;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 145667121 . C CTCTCTG 8100 PASS INDEL;BAVGPOST=0.935;BRSQ=0.680;LDAF=0.1182;AVGPOST=0.9601;RSQ=0.8613;ERATE=0.0028;THETA=0.0006;AC=268;AN=2184 GT:DS:GL:BD 0.12271062 0 1 145667256 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.740;BRSQ=0.356;LDAF=0.6595;AVGPOST=0.7407;RSQ=0.4287;ERATE=0.1019;THETA=0.0012;AC=1571;AN=2184 GT:DS:GL:BD 0.71932232 1 1 145667531 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.535;LDAF=0.0193;AVGPOST=0.9737;RSQ=0.4574;ERATE=0.0015;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 145667744 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.838;BRSQ=0.679;LDAF=0.3652;AVGPOST=0.8931;RSQ=0.8207;ERATE=0.0074;THETA=0.0010;AC=814;AN=2184 GT:DS:GL:BD 0.37271062 0 1 145667776 rs75426812 CCTGT C 8778 PASS INDEL;BAVGPOST=0.868;BRSQ=0.776;LDAF=0.5006;AVGPOST=0.8911;RSQ=0.8338;ERATE=0.0067;THETA=0.0004;AC=1160;AN=2184 GT:DS:GL:BD 0.53113556 1 1 145667882 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.193;LDAF=0.0745;AVGPOST=0.8775;RSQ=0.2800;ERATE=0.0066;THETA=0.0004;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 145667938 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.886;BRSQ=0.389;LDAF=0.8998;AVGPOST=0.8901;RSQ=0.5303;ERATE=0.0035;THETA=0.0004;AC=2049;AN=2184 GT:DS:GL:BD 0.93818682 1 1 145668568 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.904;LDAF=0.1665;AVGPOST=0.9699;RSQ=0.9144;ERATE=0.0018;THETA=0.0010;AC=342;AN=2184 GT:DS:GL:BD 0.15659341 0 1 145668723 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.953;BRSQ=0.642;LDAF=0.9287;AVGPOST=0.9387;RSQ=0.6586;ERATE=0.0050;THETA=0.0014;AC=2079;AN=2184 GT:DS:GL:BD 0.95192307 1 1 145668799 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.489;LDAF=0.0532;AVGPOST=0.9340;RSQ=0.4877;ERATE=0.0090;THETA=0.0015;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 145668813 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.524;LDAF=0.0621;AVGPOST=0.9170;RSQ=0.4108;ERATE=0.0137;THETA=0.0008;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 145668829 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.703;BRSQ=0.477;LDAF=0.6123;AVGPOST=0.7160;RSQ=0.5548;ERATE=0.0974;THETA=0.0009;AC=1423;AN=2184 GT:DS:GL:BD 0.65155679 1 1 145669060 . GAA G 101 PASS INDEL;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0034;AVGPOST=0.9984;RSQ=0.8037;ERATE=0.0005;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145669241 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.756;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145669288 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.823;LDAF=0.0050;AVGPOST=0.9996;RSQ=0.9660;ERATE=0.0002;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 145669312 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8646;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145669411 rs72506241 ACT A 19613 PASS INDEL;BAVGPOST=0.962;BRSQ=0.934;LDAF=0.5333;AVGPOST=0.9521;RSQ=0.9301;ERATE=0.0076;THETA=0.0003;AC=1173;AN=2184 GT:DS:GL:BD 0.53708792 1 1 145669412 rs72506241 CTG C 54585 PASS INDEL;BAVGPOST=0.968;BRSQ=0.944;LDAF=0.5436;AVGPOST=0.9848;RSQ=0.9760;ERATE=0.0005;THETA=0.0010;AC=1193;AN=2184 GT:DS:GL:BD 0.54624540 1 1 145669446 . ATTTG A 137 PASS INDEL;BAVGPOST=1.000;BRSQ=0.749;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3628;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145669462 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4590;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145669506 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145669523 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.874;LDAF=0.0533;AVGPOST=0.9907;RSQ=0.9299;ERATE=0.0004;THETA=0.0003;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 145669711 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.512;LDAF=0.0030;AVGPOST=0.9971;RSQ=0.5823;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145670068 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.636;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5851;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145670069 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.812;LDAF=0.0066;AVGPOST=0.9986;RSQ=0.9131;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 145670165 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.593;LDAF=0.0140;AVGPOST=0.9931;RSQ=0.7912;ERATE=0.0006;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 145670271 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.429;LDAF=0.0271;AVGPOST=0.9640;RSQ=0.4791;ERATE=0.0013;THETA=0.0007;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 145670288 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.904;BRSQ=0.822;LDAF=0.5261;AVGPOST=0.9232;RSQ=0.8786;ERATE=0.0057;THETA=0.0004;AC=1156;AN=2184 GT:DS:GL:BD 0.52930403 1 1 145670454 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.642;LDAF=0.0178;AVGPOST=0.9959;RSQ=0.9090;ERATE=0.0005;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 145670488 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.348;LDAF=0.0449;AVGPOST=0.9426;RSQ=0.4743;ERATE=0.0025;THETA=0.0009;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 145670500 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.915;BRSQ=0.219;LDAF=0.1145;AVGPOST=0.8242;RSQ=0.2871;ERATE=0.0162;THETA=0.0008;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 145670568 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.913;LDAF=0.2472;AVGPOST=0.9225;RSQ=0.8413;ERATE=0.0052;THETA=0.0005;AC=504;AN=2184 GT:DS:GL:BD 0.23076923 0 1 145670579 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.189;LDAF=0.0161;AVGPOST=0.9738;RSQ=0.3290;ERATE=0.0021;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 145670613 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.391;LDAF=0.0118;AVGPOST=0.9803;RSQ=0.3820;ERATE=0.0011;THETA=0.0012;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145670658 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.479;LDAF=0.0020;AVGPOST=0.9968;RSQ=0.3716;ERATE=0.0007;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145670796 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.263;LDAF=0.0197;AVGPOST=0.9705;RSQ=0.3957;ERATE=0.0019;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 145671122 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.1660;AVGPOST=0.9688;RSQ=0.9114;ERATE=0.0024;THETA=0.0039;AC=339;AN=2184 GT:DS:GL:BD 0.15521978 0 1 145671145 . GGGGAGA G 2088 PASS INDEL;BAVGPOST=0.786;BRSQ=0.254;LDAF=0.2068;AVGPOST=0.8077;RSQ=0.5417;ERATE=0.0092;THETA=0.0005;AC=366;AN=2184 GT:DS:GL:BD 0.16758242 0 1 145671186 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3939;AVGPOST=0.9933;RSQ=0.9883;ERATE=0.0009;THETA=0.0007;AC=857;AN=2184 GT:DS:GL:BD 0.39239928 0 1 145671242 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.4776;ERATE=0.0004;THETA=0.0038;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145671368 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145671380 . CTG C 670 PASS INDEL;BAVGPOST=0.997;BRSQ=0.763;LDAF=0.0063;AVGPOST=0.9959;RSQ=0.7230;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145671455 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2388;AVGPOST=0.9942;RSQ=0.9877;ERATE=0.0004;THETA=0.0007;AC=517;AN=2184 GT:DS:GL:BD 0.23672161 0 1 145671581 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.910;LDAF=0.0033;AVGPOST=0.9963;RSQ=0.5498;ERATE=0.0006;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145671588 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0034;AVGPOST=0.9959;RSQ=0.4990;ERATE=0.0005;THETA=0.0001;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145671622 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.727;LDAF=0.0046;AVGPOST=0.9951;RSQ=0.5895;ERATE=0.0007;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 145671634 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0080;AVGPOST=0.9996;RSQ=0.9778;ERATE=0.0003;THETA=0.0010;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145671639 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.744;LDAF=0.0062;AVGPOST=0.9984;RSQ=0.8848;ERATE=0.0007;THETA=0.0047;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 145671697 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5817;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145671775 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1535;AVGPOST=0.9974;RSQ=0.9930;ERATE=0.0003;THETA=0.0006;AC=334;AN=2184 GT:DS:GL:BD 0.15293041 0 1 145671820 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.8156;ERATE=0.0002;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145671919 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.798;LDAF=0.0142;AVGPOST=0.9975;RSQ=0.9296;ERATE=0.0003;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 145671952 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0165;AVGPOST=0.9988;RSQ=0.9724;ERATE=0.0004;THETA=0.0007;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 145672058 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.759;LDAF=0.0034;AVGPOST=0.9980;RSQ=0.7450;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145672163 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.811;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7563;ERATE=0.0003;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145672164 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.809;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7659;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145672191 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145672205 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145672299 . AG A 787 PASS INDEL;BAVGPOST=0.999;BRSQ=0.750;LDAF=0.0029;AVGPOST=0.9980;RSQ=0.7078;ERATE=0.0006;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 145672468 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145672586 . AT A 17989 PASS INDEL;BAVGPOST=0.955;BRSQ=0.754;LDAF=0.8790;AVGPOST=0.9064;RSQ=0.6396;ERATE=0.0385;THETA=0.0011;AC=1995;AN=2184 GT:DS:GL:BD 0.91346157 1 1 145672587 rs5777578 TA T 96840 PASS INDEL;BAVGPOST=0.992;BRSQ=0.920;LDAF=0.9509;AVGPOST=0.9821;RSQ=0.8636;ERATE=0.0040;THETA=0.0007;AC=2088;AN=2184 GT:DS:GL:BD 0.95604396 1 1 145672610 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5620;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145672639 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6850;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145672831 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5467;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145672848 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0040;AVGPOST=0.9989;RSQ=0.8884;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145672927 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145673018 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1507;AVGPOST=0.9984;RSQ=0.9951;ERATE=0.0003;THETA=0.0004;AC=329;AN=2184 GT:DS:GL:BD 0.15064102 0 1 145673037 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6874;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145673186 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6065;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145673188 . ACCTC A 476 PASS INDEL;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0053;AVGPOST=0.9974;RSQ=0.8001;ERATE=0.0004;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 145673256 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0039;AVGPOST=0.9989;RSQ=0.8983;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145673260 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6277;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145673340 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.854;LDAF=0.0319;AVGPOST=0.9950;RSQ=0.9425;ERATE=0.0003;THETA=0.0012;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 145673381 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.806;LDAF=0.0023;AVGPOST=0.9986;RSQ=0.7347;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145673406 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.435;LDAF=0.0019;AVGPOST=0.9976;RSQ=0.5055;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145673410 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0038;AVGPOST=0.9975;RSQ=0.7386;ERATE=0.0006;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145673441 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0027;AVGPOST=0.9981;RSQ=0.6895;ERATE=0.0004;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 145673442 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145673458 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.5053;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145673474 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.741;LDAF=0.0044;AVGPOST=0.9947;RSQ=0.5425;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 145673684 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0043;AVGPOST=0.9985;RSQ=0.8413;ERATE=0.0007;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 145673805 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.656;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.5945;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145673886 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6603;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145673922 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 145673931 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.861;LDAF=0.0250;AVGPOST=0.9940;RSQ=0.9065;ERATE=0.0004;THETA=0.0046;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 145674084 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7437;ERATE=0.0006;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145674149 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.2338;AVGPOST=0.9975;RSQ=0.9948;ERATE=0.0003;THETA=0.0015;AC=510;AN=2184 GT:DS:GL:BD 0.23351648 0 1 145674276 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145674303 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0002;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145674386 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.653;LDAF=0.0050;AVGPOST=0.9947;RSQ=0.5890;ERATE=0.0009;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 145674390 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.726;LDAF=0.0105;AVGPOST=0.9939;RSQ=0.7810;ERATE=0.0014;THETA=0.0010;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 145674405 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4608;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145674417 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.940;LDAF=0.9723;AVGPOST=0.9950;RSQ=0.9316;ERATE=0.0010;THETA=0.0006;AC=2127;AN=2184 GT:DS:GL:BD 0.97390109 1 1 145674469 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5405;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145674470 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.733;LDAF=0.0086;AVGPOST=0.9968;RSQ=0.8517;ERATE=0.0004;THETA=0.0009;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 145674473 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0033;AVGPOST=0.9955;RSQ=0.5088;ERATE=0.0010;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 145674531 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5591;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 145674537 . CT C 176 PASS INDEL;BAVGPOST=1.000;BRSQ=0.650;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4310;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0