1092 10000 1 25786258 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0073;AVGPOST=0.9985;RSQ=0.9208;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 25786450 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25786812 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.872;LDAF=0.0080;AVGPOST=0.9963;RSQ=0.8267;ERATE=0.0005;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 25786901 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7266;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25787055 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0715;AVGPOST=0.9990;RSQ=0.9945;ERATE=0.0004;THETA=0.0007;AC=156;AN=2184 GT:DS:GL:BD 0.07142857 0 1 25787146 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8678;ERATE=0.0004;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25787186 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0065;AVGPOST=0.9996;RSQ=0.9729;ERATE=0.0004;THETA=0.0012;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 25787313 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4612;AVGPOST=0.9987;RSQ=0.9980;ERATE=0.0003;THETA=0.0010;AC=1008;AN=2184 GT:DS:GL:BD 0.46153846 0 1 25787437 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6318;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25787488 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0093;AVGPOST=0.9986;RSQ=0.9482;ERATE=0.0005;THETA=0.0025;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 25787514 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.3591;ERATE=0.0006;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25787771 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0093;AVGPOST=0.9986;RSQ=0.9467;ERATE=0.0004;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 25787802 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0542;AVGPOST=0.9986;RSQ=0.9893;ERATE=0.0004;THETA=0.0010;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 25787879 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4823;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25787958 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.843;LDAF=0.0106;AVGPOST=0.9973;RSQ=0.8913;ERATE=0.0005;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 25787983 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0541;AVGPOST=0.9992;RSQ=0.9941;ERATE=0.0004;THETA=0.0009;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 25787999 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5799;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25788075 . C CA 36 PASS INDEL;BAVGPOST=0.991;BRSQ=0.460;LDAF=0.0182;AVGPOST=0.9740;RSQ=0.4149;ERATE=0.0061;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 25788198 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.4966;AVGPOST=0.9973;RSQ=0.9957;ERATE=0.0007;THETA=0.0019;AC=1086;AN=2184 GT:DS:GL:BD 0.49725273 0 1 25788327 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5749;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25788394 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0042;AVGPOST=0.9983;RSQ=0.8323;ERATE=0.0005;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25788414 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0004;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25788422 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.983;LDAF=0.6383;AVGPOST=0.9946;RSQ=0.9909;ERATE=0.0004;THETA=0.0006;AC=1395;AN=2184 GT:DS:GL:BD 0.63873625 1 1 25788424 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.910;LDAF=0.0029;AVGPOST=0.9988;RSQ=0.8262;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25788425 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.983;LDAF=0.6383;AVGPOST=0.9949;RSQ=0.9916;ERATE=0.0003;THETA=0.0006;AC=1395;AN=2184 GT:DS:GL:BD 0.63873625 1 1 25788456 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.845;LDAF=0.0035;AVGPOST=0.9987;RSQ=0.8483;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25788499 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=0.9999;RSQ=0.9956;ERATE=0.0003;THETA=0.0008;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 25788500 . CCT C 63 PASS INDEL;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.5487;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25788763 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0336;AVGPOST=0.9994;RSQ=0.9920;ERATE=0.0003;THETA=0.0007;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 25788779 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.798;LDAF=0.0028;AVGPOST=0.9981;RSQ=0.7306;ERATE=0.0006;THETA=0.0019;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25788811 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0065;AVGPOST=0.9997;RSQ=0.9764;ERATE=0.0004;THETA=0.0009;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 25788890 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0064;AVGPOST=0.9992;RSQ=0.9479;ERATE=0.0004;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 25788891 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25788962 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6364;ERATE=0.0005;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25789039 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0065;AVGPOST=0.9997;RSQ=0.9797;ERATE=0.0004;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 25789236 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8746;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25789260 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5281;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25789275 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8931;ERATE=0.0005;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25789339 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25789459 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0483;AVGPOST=0.9978;RSQ=0.9816;ERATE=0.0004;THETA=0.0013;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 25789471 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0081;AVGPOST=0.9977;RSQ=0.8998;ERATE=0.0004;THETA=0.0012;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 25789671 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0151;AVGPOST=0.9979;RSQ=0.9545;ERATE=0.0004;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 25789687 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.8033;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25789767 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0025;AVGPOST=0.9978;RSQ=0.6939;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25789823 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25790198 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.4846;AVGPOST=0.9928;RSQ=0.9895;ERATE=0.0018;THETA=0.0008;AC=1061;AN=2184 GT:DS:GL:BD 0.48580587 0 1 25790409 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0027;AVGPOST=0.9983;RSQ=0.7478;ERATE=0.0009;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25790440 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5826;ERATE=0.0003;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25790478 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6299;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25790510 rs72213116 CCA C 18076 PASS INDEL;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0814;AVGPOST=0.9993;RSQ=0.9967;ERATE=0.0004;THETA=0.0004;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 25790669 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7376;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25790695 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0136;AVGPOST=0.9981;RSQ=0.9483;ERATE=0.0003;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 25790708 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25790745 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5679;AVGPOST=0.9990;RSQ=0.9982;ERATE=0.0004;THETA=0.0005;AC=1242;AN=2184 GT:DS:GL:BD 0.56868130 1 1 25790820 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0065;AVGPOST=0.9989;RSQ=0.9372;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 25791116 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0016;AVGPOST=0.9976;RSQ=0.3235;ERATE=0.0008;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25791131 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0014;AVGPOST=0.9986;RSQ=0.5339;ERATE=0.0007;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25791207 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.5673;AVGPOST=0.9964;RSQ=0.9941;ERATE=0.0008;THETA=0.0005;AC=1240;AN=2184 GT:DS:GL:BD 0.56776559 1 1 25791226 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.5430;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25791404 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.987;LDAF=0.4880;AVGPOST=0.9944;RSQ=0.9917;ERATE=0.0010;THETA=0.0005;AC=1065;AN=2184 GT:DS:GL:BD 0.48763737 0 1 25791531 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0032;AVGPOST=0.9992;RSQ=0.8906;ERATE=0.0003;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25791565 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.816;LDAF=0.0045;AVGPOST=0.9981;RSQ=0.8359;ERATE=0.0004;THETA=0.0012;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25791678 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.844;LDAF=0.0045;AVGPOST=0.9979;RSQ=0.8035;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25791749 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0043;AVGPOST=0.9982;RSQ=0.8637;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25791760 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.554;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25791906 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4865;AVGPOST=0.9984;RSQ=0.9977;ERATE=0.0004;THETA=0.0005;AC=1064;AN=2184 GT:DS:GL:BD 0.48717949 0 1 25791968 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25792014 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5914;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25792062 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4869;AVGPOST=0.9981;RSQ=0.9971;ERATE=0.0006;THETA=0.0005;AC=1064;AN=2184 GT:DS:GL:BD 0.48717949 0 1 25792093 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.6680;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25792098 . T TG 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25792170 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5510;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25792238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9718;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 25792252 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25792325 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.733;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9141;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25792365 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25792503 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25792522 . AT A 15435 PASS INDEL;BAVGPOST=0.997;BRSQ=0.987;LDAF=0.0790;AVGPOST=0.9973;RSQ=0.9892;ERATE=0.0006;THETA=0.0006;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 25792639 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0059;AVGPOST=0.9972;RSQ=0.8095;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 25792722 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0133;AVGPOST=1.0000;RSQ=0.9983;ERATE=0.0003;THETA=0.0006;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 25792800 . TTTTA T 404 PASS INDEL;BAVGPOST=0.996;BRSQ=0.714;LDAF=0.0111;AVGPOST=0.9898;RSQ=0.6351;ERATE=0.0021;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 25792875 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.555;LDAF=0.0049;AVGPOST=0.9956;RSQ=0.6390;ERATE=0.0008;THETA=0.0010;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 25792915 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.983;LDAF=0.4601;AVGPOST=0.9953;RSQ=0.9932;ERATE=0.0009;THETA=0.0012;AC=1007;AN=2184 GT:DS:GL:BD 0.46108058 0 1 25792940 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0140;AVGPOST=0.9994;RSQ=0.9806;ERATE=0.0004;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 25792965 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.985;LDAF=0.4856;AVGPOST=0.9948;RSQ=0.9918;ERATE=0.0007;THETA=0.0009;AC=1064;AN=2184 GT:DS:GL:BD 0.48717949 0 1 25793290 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0059;AVGPOST=0.9974;RSQ=0.8308;ERATE=0.0005;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 25793471 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0034;AVGPOST=0.9986;RSQ=0.8194;ERATE=0.0006;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25793512 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0147;AVGPOST=0.9991;RSQ=0.9748;ERATE=0.0004;THETA=0.0054;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 25793516 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.661;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7099;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25793663 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.967;LDAF=0.4422;AVGPOST=0.9921;RSQ=0.9893;ERATE=0.0007;THETA=0.0005;AC=965;AN=2184 GT:DS:GL:BD 0.44184983 0 1 25793874 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7425;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25793918 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25793963 . CTT C 2910 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0134;AVGPOST=0.9997;RSQ=0.9900;ERATE=0.0004;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 25793981 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6380;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25794189 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25794434 . T TA 69 PASS INDEL;BAVGPOST=0.990;BRSQ=0.545;LDAF=0.0138;AVGPOST=0.9862;RSQ=0.6167;ERATE=0.0010;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 25794441 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0540;AVGPOST=0.9993;RSQ=0.9950;ERATE=0.0004;THETA=0.0015;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 25794465 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0030;AVGPOST=0.9986;RSQ=0.7895;ERATE=0.0004;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25794577 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8827;ERATE=0.0005;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25794610 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0080;AVGPOST=0.9979;RSQ=0.9017;ERATE=0.0004;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 25794627 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5699;ERATE=0.0003;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25794657 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.781;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6295;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25794892 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4609;AVGPOST=0.9970;RSQ=0.9958;ERATE=0.0005;THETA=0.0007;AC=1007;AN=2184 GT:DS:GL:BD 0.46108058 0 1 25794954 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0061;AVGPOST=0.9980;RSQ=0.8821;ERATE=0.0004;THETA=0.0019;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 25795090 . TC T 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.681;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6008;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25795092 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4745;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25795133 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6519;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25795142 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8236;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25795192 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0047;AVGPOST=0.9996;RSQ=0.9657;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 25795202 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6589;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25795220 . A AT 964 PASS INDEL;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0103;AVGPOST=0.9981;RSQ=0.9264;ERATE=0.0004;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 25795333 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0027;AVGPOST=0.9984;RSQ=0.7964;ERATE=0.0008;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25795401 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.744;LDAF=0.0056;AVGPOST=0.9958;RSQ=0.7246;ERATE=0.0004;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 25795539 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.647;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4268;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25795585 . TG T 8568 PASS INDEL;BAVGPOST=0.964;BRSQ=0.942;LDAF=0.4486;AVGPOST=0.9739;RSQ=0.9651;ERATE=0.0006;THETA=0.0006;AC=992;AN=2184 GT:DS:GL:BD 0.45421246 0 1 25795586 rs35904174 GGC G 45808 PASS INDEL;BAVGPOST=0.964;BRSQ=0.942;LDAF=0.4497;AVGPOST=0.9758;RSQ=0.9679;ERATE=0.0008;THETA=0.0007;AC=993;AN=2184 GT:DS:GL:BD 0.45467034 0 1 25795671 . TTTAAA T 113 PASS INDEL;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.3720;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25795701 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7220;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25796053 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.747;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.5696;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25796173 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.734;LDAF=0.0100;AVGPOST=0.9952;RSQ=0.7763;ERATE=0.0007;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 25796239 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0548;AVGPOST=0.9982;RSQ=0.9864;ERATE=0.0005;THETA=0.0006;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 25796386 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.460;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.3794;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25796528 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0025;AVGPOST=0.9991;RSQ=0.8586;ERATE=0.0004;THETA=0.0022;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25796621 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25796627 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0133;AVGPOST=0.9998;RSQ=0.9927;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 25796634 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.653;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7334;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25796696 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.725;LDAF=0.0028;AVGPOST=0.9976;RSQ=0.6555;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25796955 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0018;AVGPOST=0.9980;RSQ=0.5823;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25797268 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0053;AVGPOST=0.9973;RSQ=0.8053;ERATE=0.0004;THETA=0.0012;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 25797403 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.638;LDAF=0.0048;AVGPOST=0.9968;RSQ=0.7423;ERATE=0.0004;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25797408 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0030;AVGPOST=0.9964;RSQ=0.4662;ERATE=0.0010;THETA=0.0020;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25797473 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.583;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3851;ERATE=0.0009;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25797535 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7587;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25797552 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0025;AVGPOST=0.9987;RSQ=0.7939;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25797554 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.718;LDAF=0.0023;AVGPOST=0.9976;RSQ=0.5520;ERATE=0.0005;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25797559 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.738;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6397;ERATE=0.0005;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25797870 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5715;ERATE=0.0008;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25797906 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0114;AVGPOST=0.9989;RSQ=0.9601;ERATE=0.0004;THETA=0.0012;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 25797957 . ATTGT A 168 PASS INDEL;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25797998 . A AT 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5384;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25798034 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6063;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25798060 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0137;AVGPOST=0.9991;RSQ=0.9691;ERATE=0.0004;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 25798123 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6362;AVGPOST=0.9964;RSQ=0.9935;ERATE=0.0005;THETA=0.0007;AC=1392;AN=2184 GT:DS:GL:BD 0.63736266 1 1 25798146 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9936;ERATE=0.0003;THETA=0.0010;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 25798174 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6057;ERATE=0.0004;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25798242 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.853;LDAF=0.0110;AVGPOST=0.9960;RSQ=0.8533;ERATE=0.0008;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 25798340 . T TG 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4902;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25798372 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25798376 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0028;AVGPOST=0.9994;RSQ=0.9057;ERATE=0.0007;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25798477 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5579;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25798487 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7592;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25798556 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0513;AVGPOST=0.9989;RSQ=0.9911;ERATE=0.0003;THETA=0.0006;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 25798688 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0078;AVGPOST=0.9961;RSQ=0.8066;ERATE=0.0005;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 25798688 . A AT 528 PASS INDEL;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0099;AVGPOST=0.9973;RSQ=0.8920;ERATE=0.0004;THETA=0.0009;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 25798700 . ATACT A 679 PASS INDEL;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0072;AVGPOST=0.9994;RSQ=0.9579;ERATE=0.0005;THETA=0.0009;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 25798777 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0100;AVGPOST=0.9993;RSQ=0.9685;ERATE=0.0004;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 25798925 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0719;AVGPOST=0.9984;RSQ=0.9909;ERATE=0.0006;THETA=0.0003;AC=156;AN=2184 GT:DS:GL:BD 0.07142857 0 1 25798995 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0011;AVGPOST=0.9984;RSQ=0.4531;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25799051 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.832;LDAF=0.0158;AVGPOST=0.9932;RSQ=0.8206;ERATE=0.0006;THETA=0.0008;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 25799267 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.812;LDAF=0.0034;AVGPOST=0.9984;RSQ=0.8547;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25799407 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25799467 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.939;LDAF=0.0072;AVGPOST=0.9989;RSQ=0.9265;ERATE=0.0004;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 25799612 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.782;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4278;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25799621 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.968;LDAF=0.0290;AVGPOST=0.9967;RSQ=0.9540;ERATE=0.0004;THETA=0.0005;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 25799643 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25799681 rs72460821 CTCTG C 57464 PASS INDEL;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.4601;AVGPOST=0.9911;RSQ=0.9873;ERATE=0.0013;THETA=0.0004;AC=1008;AN=2184 GT:DS:GL:BD 0.46153846 0 1 25799748 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6849;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25799997 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.776;LDAF=0.0070;AVGPOST=0.9958;RSQ=0.7348;ERATE=0.0005;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 25800004 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5198;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25800018 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.929;LDAF=0.0674;AVGPOST=0.9837;RSQ=0.9052;ERATE=0.0004;THETA=0.0003;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 25800080 . T TA 146 PASS INDEL;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0023;AVGPOST=0.9974;RSQ=0.5287;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25800139 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0034;AVGPOST=0.9994;RSQ=0.9181;ERATE=0.0004;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25800265 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0081;AVGPOST=0.9980;RSQ=0.9103;ERATE=0.0003;THETA=0.0009;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 25800289 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0019;AVGPOST=0.9982;RSQ=0.6695;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25800597 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0023;AVGPOST=0.9985;RSQ=0.7428;ERATE=0.0005;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25800628 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0643;AVGPOST=0.9994;RSQ=0.9965;ERATE=0.0003;THETA=0.0011;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 25800790 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.4951;AVGPOST=0.9955;RSQ=0.9935;ERATE=0.0013;THETA=0.0002;AC=1084;AN=2184 GT:DS:GL:BD 0.49633700 0 1 25800981 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0018;AVGPOST=0.9988;RSQ=0.7161;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25801182 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9007;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25801194 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25801270 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25801397 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0100;AVGPOST=0.9997;RSQ=0.9868;ERATE=0.0003;THETA=0.0009;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 25801409 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4613;AVGPOST=0.9987;RSQ=0.9981;ERATE=0.0004;THETA=0.0009;AC=1008;AN=2184 GT:DS:GL:BD 0.46153846 0 1 25801442 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9233;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25801513 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25801528 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4701;ERATE=0.0006;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25801573 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0067;AVGPOST=0.9985;RSQ=0.9063;ERATE=0.0005;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 25801693 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0047;AVGPOST=0.9996;RSQ=0.9637;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 25801760 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.734;LDAF=0.0271;AVGPOST=0.9789;RSQ=0.7049;ERATE=0.0005;THETA=0.0005;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 25801822 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0028;AVGPOST=0.9984;RSQ=0.7372;ERATE=0.0009;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25801830 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0089;AVGPOST=0.9993;RSQ=0.9719;ERATE=0.0003;THETA=0.0009;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 25801934 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5312;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25801969 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0103;AVGPOST=0.9980;RSQ=0.9189;ERATE=0.0004;THETA=0.0010;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 25802001 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.975;LDAF=0.0293;AVGPOST=0.9957;RSQ=0.9441;ERATE=0.0004;THETA=0.0005;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 25802056 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.897;BRSQ=0.759;LDAF=0.4990;AVGPOST=0.8683;RSQ=0.7436;ERATE=0.0583;THETA=0.0004;AC=1120;AN=2184 GT:DS:GL:BD 0.51282054 1 1 25802127 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0080;AVGPOST=0.9985;RSQ=0.9271;ERATE=0.0003;THETA=0.0010;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 25802679 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7791;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25802746 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0112;AVGPOST=0.9994;RSQ=0.9764;ERATE=0.0004;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 25802881 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25802958 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0056;AVGPOST=0.9981;RSQ=0.8770;ERATE=0.0004;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 25803095 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4868;AVGPOST=0.9973;RSQ=0.9964;ERATE=0.0006;THETA=0.0008;AC=1064;AN=2184 GT:DS:GL:BD 0.48717949 0 1 25803162 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0629;AVGPOST=0.9993;RSQ=0.9959;ERATE=0.0003;THETA=0.0015;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 25803309 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8704;ERATE=0.0004;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25803399 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6870;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25803696 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.829;LDAF=0.0073;AVGPOST=0.9971;RSQ=0.8500;ERATE=0.0007;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 25803735 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6380;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25803736 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25803827 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0143;AVGPOST=0.9997;RSQ=0.9912;ERATE=0.0004;THETA=0.0007;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 25803856 . T TTG 12206 PASS INDEL;BAVGPOST=0.998;BRSQ=0.985;LDAF=0.0694;AVGPOST=0.9968;RSQ=0.9857;ERATE=0.0003;THETA=0.0010;AC=151;AN=2184 GT:DS:GL:BD 0.06913920 0 1 25803857 . TA T 8586 PASS INDEL;BAVGPOST=0.998;BRSQ=0.985;LDAF=0.0695;AVGPOST=0.9968;RSQ=0.9859;ERATE=0.0003;THETA=0.0009;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 25803860 . AAAACC A 17749 PASS INDEL;BAVGPOST=0.997;BRSQ=0.981;LDAF=0.0699;AVGPOST=0.9957;RSQ=0.9803;ERATE=0.0004;THETA=0.0004;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 25803861 rs72217240 AAACC A 13918 PASS INDEL;BAVGPOST=0.997;BRSQ=0.981;LDAF=0.0695;AVGPOST=0.9964;RSQ=0.9840;ERATE=0.0003;THETA=0.0006;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 25803915 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0128;AVGPOST=0.9979;RSQ=0.9329;ERATE=0.0004;THETA=0.0019;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 25803925 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0142;AVGPOST=0.9999;RSQ=0.9957;ERATE=0.0003;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 25804062 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25804092 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25804158 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0004;AVGPOST=0.9996;RSQ=0.6386;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25804456 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0077;AVGPOST=0.9986;RSQ=0.9355;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 25804463 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5466;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25804540 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0027;AVGPOST=0.9968;RSQ=0.5295;ERATE=0.0005;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25804592 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0701;AVGPOST=0.9972;RSQ=0.9873;ERATE=0.0005;THETA=0.0034;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 25804605 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6105;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25804722 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0111;AVGPOST=0.9976;RSQ=0.9150;ERATE=0.0006;THETA=0.0017;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 25804729 . CTG C 517 PASS INDEL;BAVGPOST=0.998;BRSQ=0.746;LDAF=0.0051;AVGPOST=0.9968;RSQ=0.7559;ERATE=0.0005;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25804735 . C CA 928 PASS INDEL;BAVGPOST=0.780;BRSQ=0.329;LDAF=0.2221;AVGPOST=0.7580;RSQ=0.4463;ERATE=0.0198;THETA=0.0006;AC=310;AN=2184 GT:DS:GL:BD 0.14194140 0 1 25804743 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.4956;AVGPOST=0.9943;RSQ=0.9913;ERATE=0.0007;THETA=0.0008;AC=1086;AN=2184 GT:DS:GL:BD 0.49725273 0 1 25805008 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0054;AVGPOST=0.9992;RSQ=0.9477;ERATE=0.0004;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 25805102 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0554;AVGPOST=0.9979;RSQ=0.9877;ERATE=0.0004;THETA=0.0013;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 25805179 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25805196 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9905;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 25805256 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8546;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25805396 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9535;ERATE=0.0003;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25805426 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.798;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7375;ERATE=0.0008;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25805450 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0106;AVGPOST=0.9976;RSQ=0.9073;ERATE=0.0005;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 25805451 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.5675;AVGPOST=0.9975;RSQ=0.9957;ERATE=0.0004;THETA=0.0007;AC=1242;AN=2184 GT:DS:GL:BD 0.56868130 1 1 25805580 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0060;AVGPOST=0.9982;RSQ=0.8876;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 25805616 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0018;AVGPOST=0.9978;RSQ=0.4699;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25805703 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.725;LDAF=0.0012;AVGPOST=0.9983;RSQ=0.3870;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25805704 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25805746 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7856;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25805912 . C CT 89 PASS INDEL;BAVGPOST=0.982;BRSQ=0.485;LDAF=0.0285;AVGPOST=0.9638;RSQ=0.4787;ERATE=0.0100;THETA=0.0006;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 25805931 . GTCTC G 158 PASS INDEL;BAVGPOST=0.999;BRSQ=0.701;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.8957;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25805964 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0701;AVGPOST=0.9993;RSQ=0.9959;ERATE=0.0004;THETA=0.0007;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 25806066 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8599;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25806112 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6320;AVGPOST=0.9974;RSQ=0.9953;ERATE=0.0004;THETA=0.0006;AC=1383;AN=2184 GT:DS:GL:BD 0.63324177 1 1 25806161 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.4280;ERATE=0.0006;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25806229 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25806380 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0045;AVGPOST=0.9981;RSQ=0.8334;ERATE=0.0005;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25806423 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.757;LDAF=0.0043;AVGPOST=0.9976;RSQ=0.7612;ERATE=0.0008;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25806507 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4699;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25806538 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0055;AVGPOST=0.9988;RSQ=0.8966;ERATE=0.0005;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 25806693 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6142;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25806701 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5047;ERATE=0.0008;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25806849 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0134;AVGPOST=0.9997;RSQ=0.9900;ERATE=0.0003;THETA=0.0006;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 25806859 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.3975;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25807028 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25807095 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6358;AVGPOST=0.9947;RSQ=0.9905;ERATE=0.0009;THETA=0.0033;AC=1391;AN=2184 GT:DS:GL:BD 0.63690478 1 1 25807343 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0095;AVGPOST=0.9935;RSQ=0.6930;ERATE=0.0011;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 25807404 . T TAA 4547 PASS INDEL;BAVGPOST=0.806;BRSQ=0.171;LDAF=0.8305;AVGPOST=0.7823;RSQ=0.3846;ERATE=0.0105;THETA=0.0008;AC=1950;AN=2184 GT:DS:GL:BD 0.89285713 1 1 25807444 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.645;BRSQ=0.172;LDAF=0.3254;AVGPOST=0.6135;RSQ=0.2454;ERATE=0.0343;THETA=0.0006;AC=428;AN=2184 GT:DS:GL:BD 0.19597070 0 1 25807475 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.478;LDAF=0.0447;AVGPOST=0.9474;RSQ=0.5133;ERATE=0.0032;THETA=0.0004;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 25807479 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.605;LDAF=0.0050;AVGPOST=0.9946;RSQ=0.6178;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25807509 . A AT 920 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0146;AVGPOST=0.9971;RSQ=0.9059;ERATE=0.0009;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 25807511 . G GC 818 PASS INDEL;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0154;AVGPOST=0.9972;RSQ=0.9134;ERATE=0.0006;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 25807658 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0046;AVGPOST=0.9989;RSQ=0.9154;ERATE=0.0004;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25807702 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0027;AVGPOST=0.9980;RSQ=0.7358;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25807729 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25807871 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6098;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25807960 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5418;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25808081 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9346;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25808169 . G GAGAC 158 PASS INDEL;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4371;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25808217 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25808229 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0068;AVGPOST=0.9996;RSQ=0.9747;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 25808355 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.717;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5421;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25808387 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0075;AVGPOST=0.9984;RSQ=0.9195;ERATE=0.0003;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 25808396 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0103;AVGPOST=0.9980;RSQ=0.9187;ERATE=0.0003;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 25808461 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8483;ERATE=0.0006;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25808508 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.8154;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25808509 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5467;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25808550 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0501;AVGPOST=0.9992;RSQ=0.9931;ERATE=0.0004;THETA=0.0006;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 25808667 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7313;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25808768 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.6781;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25808789 . CA C 32 PASS INDEL;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5335;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25808933 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25808948 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6370;AVGPOST=0.9994;RSQ=0.9989;ERATE=0.0003;THETA=0.0004;AC=1393;AN=2184 GT:DS:GL:BD 0.63782054 1 1 25808989 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0134;AVGPOST=0.9996;RSQ=0.9869;ERATE=0.0003;THETA=0.0006;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 25809056 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25809057 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4867;AVGPOST=0.9978;RSQ=0.9969;ERATE=0.0006;THETA=0.0003;AC=1063;AN=2184 GT:DS:GL:BD 0.48672161 0 1 25809087 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0133;AVGPOST=0.9998;RSQ=0.9941;ERATE=0.0003;THETA=0.0006;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 25809141 . ACT A 86 PASS INDEL;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5711;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25809497 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25809519 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5543;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25809575 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6140;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25809600 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.679;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5155;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25809756 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0134;AVGPOST=0.9995;RSQ=0.9841;ERATE=0.0004;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 25809895 . AC A 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5086;ERATE=0.0006;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25809986 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6141;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25810050 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0714;AVGPOST=0.9998;RSQ=0.9987;ERATE=0.0003;THETA=0.0009;AC=156;AN=2184 GT:DS:GL:BD 0.07142857 0 1 25810088 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.742;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25810416 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4967;AVGPOST=0.9996;RSQ=0.9993;ERATE=0.0004;THETA=0.0003;AC=1086;AN=2184 GT:DS:GL:BD 0.49725273 0 1 25810800 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9165;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25810885 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0088;AVGPOST=0.9998;RSQ=0.9878;ERATE=0.0004;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 25810898 . CTTTA C 192 PASS INDEL;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0031;AVGPOST=0.9989;RSQ=0.8549;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25810966 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4978;AVGPOST=0.9995;RSQ=0.9992;ERATE=0.0004;THETA=0.0009;AC=1088;AN=2184 GT:DS:GL:BD 0.49816850 0 1 25810989 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.878;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9385;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25811054 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0030;AVGPOST=0.9968;RSQ=0.6203;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25811069 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25811139 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.480;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5419;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25811478 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25811488 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.979;LDAF=0.8413;AVGPOST=0.9951;RSQ=0.9836;ERATE=0.0008;THETA=0.0004;AC=1839;AN=2184 GT:DS:GL:BD 0.84203297 1 1 25811546 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.5416;AVGPOST=0.9840;RSQ=0.9756;ERATE=0.0093;THETA=0.0006;AC=1181;AN=2184 GT:DS:GL:BD 0.54075092 1 1 25811555 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.882;LDAF=0.0083;AVGPOST=0.9973;RSQ=0.8712;ERATE=0.0004;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 25811728 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0653;AVGPOST=0.9993;RSQ=0.9963;ERATE=0.0003;THETA=0.0003;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 25811763 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25811826 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0063;AVGPOST=0.9984;RSQ=0.8814;ERATE=0.0007;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 25811841 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9630;ERATE=0.0006;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25811926 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.8024;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25811986 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25812155 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25812321 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25812325 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25812427 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0133;AVGPOST=1.0000;RSQ=0.9985;ERATE=0.0003;THETA=0.0007;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 25812616 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25812618 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8540;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25812713 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0068;AVGPOST=0.9992;RSQ=0.9493;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 25812730 . A AC 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6354;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25812780 . G GA 96 PASS INDEL;BAVGPOST=0.993;BRSQ=0.518;LDAF=0.0129;AVGPOST=0.9821;RSQ=0.4651;ERATE=0.0042;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 25812822 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7129;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25812859 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4972;AVGPOST=0.9988;RSQ=0.9983;ERATE=0.0004;THETA=0.0009;AC=1086;AN=2184 GT:DS:GL:BD 0.49725273 0 1 25812916 . C CT 18 PASS INDEL;BAVGPOST=0.991;BRSQ=0.579;LDAF=0.0186;AVGPOST=0.9749;RSQ=0.4480;ERATE=0.0078;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 25813043 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7863;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25813064 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0079;AVGPOST=0.9964;RSQ=0.8249;ERATE=0.0006;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 25813094 . CTG C 1043 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0077;AVGPOST=0.9985;RSQ=0.9182;ERATE=0.0004;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 25813124 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6910;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25813156 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25813174 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25813318 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0062;AVGPOST=0.9995;RSQ=0.9743;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 25813428 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25813491 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.688;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6580;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25813514 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25813620 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6374;AVGPOST=0.9979;RSQ=0.9967;ERATE=0.0005;THETA=0.0004;AC=1393;AN=2184 GT:DS:GL:BD 0.63782054 1 1 25813667 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0103;AVGPOST=0.9994;RSQ=0.9723;ERATE=0.0005;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 25813679 . C CT 476 PASS INDEL;BAVGPOST=0.998;BRSQ=0.739;LDAF=0.0039;AVGPOST=0.9976;RSQ=0.7867;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25813811 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6348;AVGPOST=0.9945;RSQ=0.9904;ERATE=0.0009;THETA=0.0005;AC=1392;AN=2184 GT:DS:GL:BD 0.63736266 1 1 25813996 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0065;AVGPOST=0.9997;RSQ=0.9764;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 25814102 . TTATGA T 139 PASS INDEL;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0022;AVGPOST=0.9975;RSQ=0.5998;ERATE=0.0007;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25814227 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0543;AVGPOST=0.9993;RSQ=0.9944;ERATE=0.0005;THETA=0.0004;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 25814246 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0037;AVGPOST=0.9987;RSQ=0.8606;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25814332 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0277;AVGPOST=0.9973;RSQ=0.9645;ERATE=0.0003;THETA=0.0006;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 25814349 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9047;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25814366 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25814388 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7530;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25814604 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25814840 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0074;AVGPOST=0.9990;RSQ=0.9464;ERATE=0.0004;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 25814911 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0032;AVGPOST=0.9995;RSQ=0.9348;ERATE=0.0004;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25814967 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7167;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25814983 . C CT 86 PASS INDEL;BAVGPOST=0.978;BRSQ=0.529;LDAF=0.0348;AVGPOST=0.9549;RSQ=0.4552;ERATE=0.0133;THETA=0.0014;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 25815010 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.413;LDAF=0.0035;AVGPOST=0.9943;RSQ=0.3889;ERATE=0.0019;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25815277 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0040;AVGPOST=0.9979;RSQ=0.7895;ERATE=0.0006;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25815297 . T TTTTA 242 PASS INDEL;BAVGPOST=0.999;BRSQ=0.607;LDAF=0.0043;AVGPOST=0.9931;RSQ=0.3050;ERATE=0.0015;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25815307 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6454;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25815317 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.864;LDAF=0.0134;AVGPOST=0.9956;RSQ=0.8513;ERATE=0.0008;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 25815382 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.8977;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25815419 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0014;AVGPOST=0.9986;RSQ=0.5707;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25815563 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9760;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 25815605 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0713;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=156;AN=2184 GT:DS:GL:BD 0.07142857 0 1 25815625 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0046;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0005;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 25815676 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0061;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 25815683 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25815776 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25815814 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 25815962 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0077;AVGPOST=0.9996;RSQ=0.9805;ERATE=0.0005;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 25816018 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25816099 . TAC T 50 PASS INDEL;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6128;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25816168 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.527;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6839;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25816560 . TGAG T 36 PASS INDEL;BAVGPOST=0.999;BRSQ=0.810;LDAF=0.0033;AVGPOST=0.9969;RSQ=0.5918;ERATE=0.0015;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25816584 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5626;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25816636 . G GA 354 PASS INDEL;BAVGPOST=0.996;BRSQ=0.649;LDAF=0.0050;AVGPOST=0.9962;RSQ=0.6832;ERATE=0.0017;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25816658 rs71808843 CATA C 33977 PASS INDEL;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.2062;AVGPOST=0.9929;RSQ=0.9838;ERATE=0.0022;THETA=0.0003;AC=448;AN=2184 GT:DS:GL:BD 0.20512821 0 1 25816847 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2054;AVGPOST=0.9986;RSQ=0.9966;ERATE=0.0005;THETA=0.0004;AC=446;AN=2184 GT:DS:GL:BD 0.20421246 0 1 25816866 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25816885 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0091;AVGPOST=0.9991;RSQ=0.9607;ERATE=0.0003;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 25816946 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0132;AVGPOST=0.9997;RSQ=0.9906;ERATE=0.0003;THETA=0.0008;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 25817195 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.698;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5219;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25817231 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0714;AVGPOST=0.9995;RSQ=0.9974;ERATE=0.0004;THETA=0.0003;AC=156;AN=2184 GT:DS:GL:BD 0.07142857 0 1 25817262 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.741;LDAF=0.0036;AVGPOST=0.9970;RSQ=0.6339;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25817280 . TTAATA T 951 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0092;AVGPOST=0.9989;RSQ=0.9549;ERATE=0.0005;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 25817345 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.726;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6343;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25817588 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0098;AVGPOST=0.9989;RSQ=0.9597;ERATE=0.0004;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 25817704 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7493;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25817705 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5645;AVGPOST=0.9971;RSQ=0.9956;ERATE=0.0015;THETA=0.0005;AC=1234;AN=2184 GT:DS:GL:BD 0.56501830 1 1 25817709 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0031;AVGPOST=0.9995;RSQ=0.9354;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25817798 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25818035 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9111;ERATE=0.0016;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25818044 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25818182 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9858;ERATE=0.0008;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 25818314 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25818357 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25818365 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8562;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25818398 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4973;AVGPOST=0.9993;RSQ=0.9989;ERATE=0.0006;THETA=0.0007;AC=1087;AN=2184 GT:DS:GL:BD 0.49771062 0 1 25818430 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25818452 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.2010;AVGPOST=0.9979;RSQ=0.9951;ERATE=0.0004;THETA=0.0009;AC=436;AN=2184 GT:DS:GL:BD 0.19963370 0 1 25818472 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7141;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25818534 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5219;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25818592 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9602;ERATE=0.0003;THETA=0.0050;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 25818759 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6895;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25818874 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0628;AVGPOST=0.9995;RSQ=0.9972;ERATE=0.0003;THETA=0.0005;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 25818877 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0026;AVGPOST=0.9992;RSQ=0.8833;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25818959 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7930;ERATE=0.0003;THETA=0.0035;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25819003 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.713;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5742;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25819089 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0072;AVGPOST=0.9990;RSQ=0.9483;ERATE=0.0003;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 25819111 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6881;ERATE=0.0004;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25819115 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7252;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25819129 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5016;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25819158 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0029;AVGPOST=0.9987;RSQ=0.8304;ERATE=0.0005;THETA=0.0028;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25819309 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8360;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25819360 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7393;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25819611 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8228;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25819632 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0062;AVGPOST=0.9982;RSQ=0.8878;ERATE=0.0003;THETA=0.0011;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 25819655 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.811;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8767;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25819815 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7215;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25819898 . A AT 200 PASS INDEL;BAVGPOST=0.949;BRSQ=0.420;LDAF=0.0737;AVGPOST=0.9000;RSQ=0.3907;ERATE=0.0217;THETA=0.0005;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 25819913 . G GT 172 PASS INDEL;BAVGPOST=0.991;BRSQ=0.484;LDAF=0.0182;AVGPOST=0.9742;RSQ=0.4026;ERATE=0.0056;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 25819930 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.657;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25820155 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.509;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5136;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25820163 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0136;AVGPOST=0.9993;RSQ=0.9769;ERATE=0.0004;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 25820540 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25820559 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25820590 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7752;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25820672 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8653;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25820953 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0133;AVGPOST=0.9999;RSQ=0.9950;ERATE=0.0003;THETA=0.0008;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 25820977 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0514;AVGPOST=0.9986;RSQ=0.9887;ERATE=0.0004;THETA=0.0004;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 25821062 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25821380 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.870;LDAF=0.0177;AVGPOST=0.9932;RSQ=0.8522;ERATE=0.0009;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 25821503 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0538;AVGPOST=0.9996;RSQ=0.9972;ERATE=0.0004;THETA=0.0015;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 25821594 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.776;LDAF=0.0023;AVGPOST=0.9973;RSQ=0.5508;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25821671 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4940;AVGPOST=0.9958;RSQ=0.9947;ERATE=0.0006;THETA=0.0003;AC=1078;AN=2184 GT:DS:GL:BD 0.49358973 0 1 25821688 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4959;AVGPOST=0.9971;RSQ=0.9960;ERATE=0.0004;THETA=0.0004;AC=1084;AN=2184 GT:DS:GL:BD 0.49633700 0 1 25821837 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4859;AVGPOST=0.9962;RSQ=0.9949;ERATE=0.0007;THETA=0.0002;AC=1063;AN=2184 GT:DS:GL:BD 0.48672161 0 1 25821851 . CA C 70 PASS INDEL;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6088;ERATE=0.0007;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25821892 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0070;AVGPOST=0.9997;RSQ=0.9811;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 25821896 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8214;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25821978 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0061;AVGPOST=0.9993;RSQ=0.9573;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 25822180 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.705;LDAF=0.0064;AVGPOST=0.9950;RSQ=0.6577;ERATE=0.0006;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 25822181 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.760;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.7233;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25822202 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.946;BRSQ=0.909;LDAF=0.5405;AVGPOST=0.9489;RSQ=0.9294;ERATE=0.0039;THETA=0.0007;AC=1211;AN=2184 GT:DS:GL:BD 0.55448717 1 1 25822225 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.936;BRSQ=0.892;LDAF=0.5283;AVGPOST=0.9397;RSQ=0.9164;ERATE=0.0039;THETA=0.0054;AC=1183;AN=2184 GT:DS:GL:BD 0.54166669 1 1 25822265 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0102;AVGPOST=0.9973;RSQ=0.8857;ERATE=0.0007;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 25822271 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.929;BRSQ=0.889;LDAF=0.4633;AVGPOST=0.9361;RSQ=0.9171;ERATE=0.0036;THETA=0.0008;AC=1042;AN=2184 GT:DS:GL:BD 0.47710621 0 1 25822317 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.746;LDAF=0.0054;AVGPOST=0.9971;RSQ=0.7822;ERATE=0.0006;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25822337 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.748;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5628;ERATE=0.0006;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25822603 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.758;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8481;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25822632 . C CT 144 PASS INDEL;BAVGPOST=0.975;BRSQ=0.511;LDAF=0.0396;AVGPOST=0.9487;RSQ=0.4283;ERATE=0.0135;THETA=0.0007;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 25822649 . C CT 667 PASS INDEL;BAVGPOST=0.928;BRSQ=0.467;LDAF=0.1109;AVGPOST=0.8670;RSQ=0.4421;ERATE=0.0285;THETA=0.0013;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 25822667 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.5935;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25822766 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.5987;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25823189 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6042;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25823312 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6634;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25823343 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0053;AVGPOST=0.9994;RSQ=0.9486;ERATE=0.0003;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 25823416 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9233;ERATE=0.0004;THETA=0.0025;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25823732 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.802;LDAF=0.0039;AVGPOST=0.9960;RSQ=0.5417;ERATE=0.0006;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25823740 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.928;LDAF=0.8306;AVGPOST=0.9535;RSQ=0.8712;ERATE=0.0043;THETA=0.0004;AC=1839;AN=2184 GT:DS:GL:BD 0.84203297 1 1 25823931 rs34222763 G GA 2247 PASS INDEL;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0134;AVGPOST=0.9995;RSQ=0.9816;ERATE=0.0004;THETA=0.0015;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 25823985 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8891;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25824130 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25824213 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0049;AVGPOST=0.9990;RSQ=0.9177;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 25824308 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7255;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25824324 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0066;AVGPOST=0.9996;RSQ=0.9831;ERATE=0.0003;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 25824336 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0134;AVGPOST=0.9997;RSQ=0.9916;ERATE=0.0003;THETA=0.0020;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 25824399 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25824498 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.954;LDAF=0.0322;AVGPOST=0.9961;RSQ=0.9541;ERATE=0.0004;THETA=0.0006;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 25824574 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.8078;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25825118 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0013;AVGPOST=0.9998;RSQ=0.9360;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25825389 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0053;AVGPOST=0.9994;RSQ=0.9522;ERATE=0.0004;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 25825571 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0088;AVGPOST=0.9997;RSQ=0.9878;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 25825591 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0541;AVGPOST=0.9996;RSQ=0.9970;ERATE=0.0003;THETA=0.0014;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 25825600 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7390;ERATE=0.0008;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25825669 . GA G 15 PASS INDEL;BAVGPOST=0.999;BRSQ=0.553;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5835;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25825743 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6669;ERATE=0.0004;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25825781 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4969;AVGPOST=0.9965;RSQ=0.9944;ERATE=0.0010;THETA=0.0004;AC=1086;AN=2184 GT:DS:GL:BD 0.49725273 0 1 25825827 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4788;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25825831 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0033;AVGPOST=0.9994;RSQ=0.9191;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25825884 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0665;AVGPOST=0.9989;RSQ=0.9947;ERATE=0.0003;THETA=0.0006;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 25825931 . G GT 1367 PASS INDEL;BAVGPOST=0.877;BRSQ=0.431;LDAF=0.1878;AVGPOST=0.7895;RSQ=0.4077;ERATE=0.0631;THETA=0.0003;AC=220;AN=2184 GT:DS:GL:BD 0.10073260 0 1 25825941 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.824;LDAF=0.0048;AVGPOST=0.9947;RSQ=0.5780;ERATE=0.0006;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25825941 . T TG 44 PASS INDEL;BAVGPOST=0.997;BRSQ=0.775;LDAF=0.0042;AVGPOST=0.9953;RSQ=0.5180;ERATE=0.0008;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25825949 . TG T 20327 PASS INDEL;BAVGPOST=0.948;BRSQ=0.907;LDAF=0.6220;AVGPOST=0.9666;RSQ=0.9476;ERATE=0.0040;THETA=0.0004;AC=1376;AN=2184 GT:DS:GL:BD 0.63003665 1 1 25825956 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.930;BRSQ=0.873;LDAF=0.4337;AVGPOST=0.9250;RSQ=0.8901;ERATE=0.0093;THETA=0.0056;AC=973;AN=2184 GT:DS:GL:BD 0.44551283 0 1 25826046 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.782;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7724;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25826096 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.739;LDAF=0.0084;AVGPOST=0.9931;RSQ=0.6768;ERATE=0.0005;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 25826328 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.4872;AVGPOST=0.9956;RSQ=0.9935;ERATE=0.0006;THETA=0.0012;AC=1064;AN=2184 GT:DS:GL:BD 0.48717949 0 1 25826502 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4928;AVGPOST=0.9962;RSQ=0.9949;ERATE=0.0005;THETA=0.0008;AC=1075;AN=2184 GT:DS:GL:BD 0.49221611 0 1 25826613 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6195;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25826621 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.773;LDAF=0.0022;AVGPOST=0.9979;RSQ=0.5935;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25827318 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0020;AVGPOST=0.9994;RSQ=0.8663;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25827422 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.6034;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25827562 . CATGATGCACTA C 23829 PASS INDEL;BAVGPOST=0.995;BRSQ=0.962;LDAF=0.0633;AVGPOST=0.9964;RSQ=0.9814;ERATE=0.0004;THETA=0.0010;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 25827730 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7234;ERATE=0.0008;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25827790 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7921;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25828011 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0065;AVGPOST=0.9995;RSQ=0.9699;ERATE=0.0003;THETA=0.0014;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 25828322 rs67299897 CCT C 48189 PASS INDEL;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.4866;AVGPOST=0.9930;RSQ=0.9898;ERATE=0.0013;THETA=0.0020;AC=1063;AN=2184 GT:DS:GL:BD 0.48672161 0 1 25828325 . CT C 749 PASS INDEL;BAVGPOST=0.788;BRSQ=0.642;LDAF=0.2654;AVGPOST=0.8234;RSQ=0.7435;ERATE=0.0012;THETA=0.0006;AC=598;AN=2184 GT:DS:GL:BD 0.27380952 0 1 25828337 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7311;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25828561 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.674;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5384;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25828641 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25828726 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7593;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25828730 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0132;AVGPOST=0.9989;RSQ=0.9641;ERATE=0.0004;THETA=0.0007;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 25828734 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9370;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25828758 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6357;AVGPOST=0.9951;RSQ=0.9919;ERATE=0.0006;THETA=0.0014;AC=1392;AN=2184 GT:DS:GL:BD 0.63736266 1 1 25828863 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0083;AVGPOST=0.9975;RSQ=0.8887;ERATE=0.0006;THETA=0.0013;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 25828927 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0136;AVGPOST=0.9991;RSQ=0.9690;ERATE=0.0005;THETA=0.0022;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 25829151 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25829154 . T TTCC 1690 PASS INDEL;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0080;AVGPOST=0.9986;RSQ=0.9300;ERATE=0.0004;THETA=0.0011;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 25829158 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0063;AVGPOST=0.9992;RSQ=0.9478;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 25829171 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5306;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25829180 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0022;AVGPOST=0.9985;RSQ=0.7594;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25829454 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6599;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25829608 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4665;ERATE=0.0003;THETA=0.0047;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25829774 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0109;AVGPOST=0.9996;RSQ=0.9869;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 25829818 . GT G 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4815;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25829988 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4604;AVGPOST=0.9946;RSQ=0.9924;ERATE=0.0004;THETA=0.0011;AC=1006;AN=2184 GT:DS:GL:BD 0.46062270 0 1 25830002 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0080;AVGPOST=0.9984;RSQ=0.9353;ERATE=0.0005;THETA=0.0010;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 25830113 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8858;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25830152 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0098;AVGPOST=0.9982;RSQ=0.9426;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 25830164 . GTCC G 7632 PASS INDEL;BAVGPOST=0.997;BRSQ=0.974;LDAF=0.0580;AVGPOST=0.9931;RSQ=0.9555;ERATE=0.0010;THETA=0.0007;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 25830231 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.844;LDAF=0.0082;AVGPOST=0.9963;RSQ=0.8039;ERATE=0.0025;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 25830328 . CCA C 934 PASS INDEL;BAVGPOST=0.995;BRSQ=0.754;LDAF=0.0096;AVGPOST=0.9945;RSQ=0.7653;ERATE=0.0005;THETA=0.0011;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 25830433 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.575;LDAF=0.0020;AVGPOST=0.9969;RSQ=0.3474;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25830442 . GAC G 16 PASS INDEL;BAVGPOST=0.999;BRSQ=0.588;LDAF=0.0049;AVGPOST=0.9936;RSQ=0.5242;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25830622 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6847;ERATE=0.0004;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25830733 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0061;AVGPOST=0.9977;RSQ=0.8737;ERATE=0.0005;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 25830891 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0092;AVGPOST=0.9989;RSQ=0.9515;ERATE=0.0004;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 25830899 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.5638;AVGPOST=0.9918;RSQ=0.9868;ERATE=0.0005;THETA=0.0007;AC=1235;AN=2184 GT:DS:GL:BD 0.56547618 1 1 25831033 . GAAAA G 5110 PASS INDEL;BAVGPOST=0.986;BRSQ=0.856;LDAF=0.0464;AVGPOST=0.9938;RSQ=0.9503;ERATE=0.0005;THETA=0.0004;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 25831074 . A AGG 170 PASS INDEL;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0022;AVGPOST=0.9974;RSQ=0.5294;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25831189 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0027;AVGPOST=0.9995;RSQ=0.9288;ERATE=0.0005;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25831191 . TTACTG T 60 PASS INDEL;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0003;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25831222 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5291;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25831378 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25831539 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25831605 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0064;AVGPOST=0.9998;RSQ=0.9863;ERATE=0.0003;THETA=0.0048;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 25831873 . CTTTG C 395 PASS INDEL;BAVGPOST=0.998;BRSQ=0.821;LDAF=0.0051;AVGPOST=0.9976;RSQ=0.7895;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25831947 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25832004 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6131;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25832060 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0034;AVGPOST=0.9987;RSQ=0.8510;ERATE=0.0008;THETA=0.0141;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25832368 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25832533 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.6273;ERATE=0.0005;THETA=0.0051;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25832564 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0003;AVGPOST=0.9994;RSQ=0.3872;ERATE=0.0004;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 25832571 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.781;LDAF=0.0018;AVGPOST=0.9999;RSQ=0.9762;ERATE=0.0003;THETA=0.0020;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25832771 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.669;LDAF=0.0009;AVGPOST=0.9987;RSQ=0.3854;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25832872 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.847;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.8266;ERATE=0.0003;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25832948 . A AGG 15120 PASS INDEL;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0558;AVGPOST=0.9985;RSQ=0.9887;ERATE=0.0004;THETA=0.0010;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 25833033 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6941;ERATE=0.0004;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25833115 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6652;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25833148 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.864;LDAF=0.0109;AVGPOST=0.9946;RSQ=0.7745;ERATE=0.0006;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 25833177 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0674;AVGPOST=0.9983;RSQ=0.9899;ERATE=0.0005;THETA=0.0013;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 25833223 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.652;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5072;ERATE=0.0005;THETA=0.0043;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25833225 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.722;LDAF=0.0021;AVGPOST=0.9977;RSQ=0.4868;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25833248 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.971;LDAF=0.4890;AVGPOST=0.9853;RSQ=0.9797;ERATE=0.0008;THETA=0.0004;AC=1070;AN=2184 GT:DS:GL:BD 0.48992673 0 1 25833766 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0120;AVGPOST=0.9976;RSQ=0.9171;ERATE=0.0005;THETA=0.0019;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 25834012 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0113;AVGPOST=0.9991;RSQ=0.9676;ERATE=0.0004;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 25834658 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0555;AVGPOST=0.9981;RSQ=0.9868;ERATE=0.0004;THETA=0.0012;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 25834968 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0776;AVGPOST=0.9940;RSQ=0.9719;ERATE=0.0007;THETA=0.0033;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 25834969 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.570;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4723;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25839213 . T TA 28 PASS INDEL;BAVGPOST=0.998;BRSQ=0.541;LDAF=0.0033;AVGPOST=0.9956;RSQ=0.4326;ERATE=0.0008;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25839228 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.925;BRSQ=0.860;LDAF=0.5225;AVGPOST=0.9067;RSQ=0.8577;ERATE=0.0195;THETA=0.0010;AC=1173;AN=2184 GT:DS:GL:BD 0.53708792 1 1 25839307 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.721;LDAF=0.0036;AVGPOST=0.9958;RSQ=0.5027;ERATE=0.0009;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25839518 . C CT 416 PASS INDEL;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0036;AVGPOST=0.9988;RSQ=0.8457;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25839571 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.647;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6029;ERATE=0.0003;THETA=0.0036;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25839610 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.701;LDAF=0.0090;AVGPOST=0.9946;RSQ=0.7540;ERATE=0.0007;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 25839788 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0679;AVGPOST=0.9968;RSQ=0.9839;ERATE=0.0005;THETA=0.0007;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 25839883 . A AC 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6620;ERATE=0.0004;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25839918 . CAA C 125 PASS INDEL;BAVGPOST=1.000;BRSQ=0.767;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.3526;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25839942 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=0.9999;RSQ=0.9910;ERATE=0.0003;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 25839981 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0082;AVGPOST=0.9991;RSQ=0.9514;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 25839997 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0673;AVGPOST=0.9996;RSQ=0.9976;ERATE=0.0004;THETA=0.0003;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 25840015 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5938;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25840036 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0072;AVGPOST=0.9994;RSQ=0.9718;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 25840046 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4922;AVGPOST=0.9990;RSQ=0.9984;ERATE=0.0004;THETA=0.0004;AC=1076;AN=2184 GT:DS:GL:BD 0.49267399 0 1 25840181 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.749;LDAF=0.0069;AVGPOST=0.9959;RSQ=0.7508;ERATE=0.0008;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 25840226 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4921;AVGPOST=0.9989;RSQ=0.9983;ERATE=0.0005;THETA=0.0006;AC=1076;AN=2184 GT:DS:GL:BD 0.49267399 0 1 25840326 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25840440 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0071;AVGPOST=0.9996;RSQ=0.9839;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 25840450 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6025;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25840568 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9997;RSQ=0.9603;ERATE=0.0003;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25840758 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0087;AVGPOST=0.9999;RSQ=0.9938;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 25840774 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4887;AVGPOST=0.9991;RSQ=0.9985;ERATE=0.0004;THETA=0.0005;AC=1068;AN=2184 GT:DS:GL:BD 0.48901099 0 1 25840796 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0123;AVGPOST=0.9988;RSQ=0.9638;ERATE=0.0004;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 25840873 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.7297;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25840904 rs34380625 T TTTTG 51487 PASS INDEL;BAVGPOST=0.958;BRSQ=0.931;LDAF=0.4684;AVGPOST=0.9529;RSQ=0.9364;ERATE=0.0076;THETA=0.0004;AC=1053;AN=2184 GT:DS:GL:BD 0.48214287 0 1 25840970 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0554;AVGPOST=0.9975;RSQ=0.9830;ERATE=0.0006;THETA=0.0004;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 25841119 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.757;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6413;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25841150 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0056;AVGPOST=0.9969;RSQ=0.7934;ERATE=0.0005;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25841154 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0041;AVGPOST=0.9985;RSQ=0.8454;ERATE=0.0005;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25841203 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4971;AVGPOST=0.9977;RSQ=0.9969;ERATE=0.0006;THETA=0.0007;AC=1088;AN=2184 GT:DS:GL:BD 0.49816850 0 1 25841209 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.981;LDAF=0.0582;AVGPOST=0.9973;RSQ=0.9825;ERATE=0.0005;THETA=0.0005;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 25841254 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0058;AVGPOST=0.9990;RSQ=0.9278;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 25841255 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0038;AVGPOST=0.9993;RSQ=0.9130;ERATE=0.0014;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25841357 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0672;AVGPOST=0.9999;RSQ=0.9994;ERATE=0.0003;THETA=0.0009;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 25841631 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.4886;AVGPOST=0.9988;RSQ=0.9980;ERATE=0.0006;THETA=0.0008;AC=1068;AN=2184 GT:DS:GL:BD 0.48901099 0 1 25841749 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6646;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25841772 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0695;AVGPOST=0.9998;RSQ=0.9989;ERATE=0.0003;THETA=0.0008;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 25841804 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0596;AVGPOST=0.9996;RSQ=0.9973;ERATE=0.0003;THETA=0.0004;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 25841874 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0044;AVGPOST=0.9995;RSQ=0.9454;ERATE=0.0004;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25842095 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25842341 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.878;LDAF=0.0129;AVGPOST=0.9944;RSQ=0.8301;ERATE=0.0005;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 25842380 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0100;AVGPOST=0.9991;RSQ=0.9583;ERATE=0.0005;THETA=0.0063;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 25842607 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6941;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25842618 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6436;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25842648 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25842745 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0015;AVGPOST=0.9978;RSQ=0.4377;ERATE=0.0006;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25842773 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0051;AVGPOST=0.9982;RSQ=0.8584;ERATE=0.0003;THETA=0.0019;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 25842827 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0677;AVGPOST=0.9991;RSQ=0.9956;ERATE=0.0004;THETA=0.0006;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 25842870 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0004;AVGPOST=0.9995;RSQ=0.4684;ERATE=0.0004;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 25842928 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0003;AVGPOST=0.9993;RSQ=0.1961;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 25842945 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5778;AVGPOST=0.9946;RSQ=0.9918;ERATE=0.0006;THETA=0.0008;AC=1260;AN=2184 GT:DS:GL:BD 0.57692307 1 1 25843172 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0774;AVGPOST=0.9994;RSQ=0.9968;ERATE=0.0004;THETA=0.0005;AC=169;AN=2184 GT:DS:GL:BD 0.07738096 0 1 25843265 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8177;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25843282 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0757;AVGPOST=0.9984;RSQ=0.9933;ERATE=0.0004;THETA=0.0024;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 25843296 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0149;AVGPOST=0.9965;RSQ=0.9066;ERATE=0.0004;THETA=0.0010;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 25843415 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.848;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8951;ERATE=0.0004;THETA=0.0017;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25843592 . A AAGGGTT 15390 PASS INDEL;BAVGPOST=0.991;BRSQ=0.933;LDAF=0.0650;AVGPOST=0.9972;RSQ=0.9846;ERATE=0.0004;THETA=0.0005;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 25843611 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25843719 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6872;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25843770 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0029;AVGPOST=0.9986;RSQ=0.8206;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25843826 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25843944 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7078;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25844029 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8107;ERATE=0.0009;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25844055 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0055;AVGPOST=0.9978;RSQ=0.8073;ERATE=0.0015;THETA=0.0014;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 25844090 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0112;AVGPOST=0.9995;RSQ=0.9780;ERATE=0.0005;THETA=0.0008;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 25844132 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5296;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25844167 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8271;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25844173 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0020;AVGPOST=0.9993;RSQ=0.8428;ERATE=0.0005;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25844296 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6913;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25844526 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4468;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25844714 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5670;AVGPOST=0.9950;RSQ=0.9917;ERATE=0.0006;THETA=0.0010;AC=1239;AN=2184 GT:DS:GL:BD 0.56730771 1 1 25844717 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0049;AVGPOST=0.9977;RSQ=0.8298;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 25844761 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9250;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25844785 . GA G 307 PASS INDEL;BAVGPOST=0.997;BRSQ=0.724;LDAF=0.0050;AVGPOST=0.9969;RSQ=0.7239;ERATE=0.0012;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25844821 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9233;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25845072 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0104;AVGPOST=0.9985;RSQ=0.9371;ERATE=0.0005;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 25845250 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.979;LDAF=0.0768;AVGPOST=0.9967;RSQ=0.9831;ERATE=0.0006;THETA=0.0004;AC=169;AN=2184 GT:DS:GL:BD 0.07738096 0 1 25845274 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4256;ERATE=0.0005;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25845299 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.974;LDAF=0.0757;AVGPOST=0.9961;RSQ=0.9808;ERATE=0.0009;THETA=0.0006;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 25845447 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.812;LDAF=0.0443;AVGPOST=0.9683;RSQ=0.7164;ERATE=0.0010;THETA=0.0005;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 25845464 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.677;LDAF=0.0041;AVGPOST=0.9947;RSQ=0.5020;ERATE=0.0013;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25845563 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0671;AVGPOST=0.9989;RSQ=0.9934;ERATE=0.0005;THETA=0.0009;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 25845676 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25845742 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0586;AVGPOST=0.9989;RSQ=0.9933;ERATE=0.0003;THETA=0.0005;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 25845862 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.712;LDAF=0.0006;AVGPOST=0.9990;RSQ=0.3277;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25845923 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.863;LDAF=0.0060;AVGPOST=0.9988;RSQ=0.9218;ERATE=0.0004;THETA=0.0018;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 25846045 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8699;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25846062 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0081;AVGPOST=0.9986;RSQ=0.9414;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 25846269 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0004;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25846337 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6392;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25846363 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0766;AVGPOST=0.9991;RSQ=0.9951;ERATE=0.0004;THETA=0.0010;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 25846389 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0027;AVGPOST=0.9982;RSQ=0.7066;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25846416 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.879;LDAF=0.0321;AVGPOST=0.9904;RSQ=0.8801;ERATE=0.0005;THETA=0.0009;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 25846420 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0017;AVGPOST=0.9973;RSQ=0.3451;ERATE=0.0006;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25846504 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.975;LDAF=0.0755;AVGPOST=0.9981;RSQ=0.9908;ERATE=0.0005;THETA=0.0012;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 25846536 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.745;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4189;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25846538 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.702;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4858;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25846539 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0056;AVGPOST=0.9996;RSQ=0.9689;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 25846650 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.967;LDAF=0.0784;AVGPOST=0.9861;RSQ=0.9393;ERATE=0.0028;THETA=0.0007;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 25846681 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.696;LDAF=0.0046;AVGPOST=0.9973;RSQ=0.7598;ERATE=0.0006;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 25846737 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25846771 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25846782 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8625;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25846842 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7386;ERATE=0.0005;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25846949 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0762;AVGPOST=0.9995;RSQ=0.9977;ERATE=0.0003;THETA=0.0012;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 25846990 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7683;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25847057 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25847143 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25847216 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7131;ERATE=0.0005;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25847372 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6620;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25847404 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0763;AVGPOST=0.9995;RSQ=0.9974;ERATE=0.0004;THETA=0.0010;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 25847508 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0762;AVGPOST=0.9993;RSQ=0.9963;ERATE=0.0003;THETA=0.0020;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 25847693 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8771;ERATE=0.0003;THETA=0.0024;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25847718 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5552;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25847753 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.986;LDAF=0.0587;AVGPOST=0.9961;RSQ=0.9790;ERATE=0.0004;THETA=0.0006;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 25847765 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4324;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25847781 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.956;LDAF=0.0627;AVGPOST=0.9947;RSQ=0.9730;ERATE=0.0004;THETA=0.0025;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 25847786 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.960;LDAF=0.0614;AVGPOST=0.9943;RSQ=0.9714;ERATE=0.0004;THETA=0.0008;AC=135;AN=2184 GT:DS:GL:BD 0.06181319 0 1 25847789 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.960;LDAF=0.0617;AVGPOST=0.9934;RSQ=0.9679;ERATE=0.0004;THETA=0.0013;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 25847810 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.953;LDAF=0.0649;AVGPOST=0.9951;RSQ=0.9759;ERATE=0.0005;THETA=0.0015;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 25847814 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4680;ERATE=0.0005;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25847830 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.568;LDAF=0.0023;AVGPOST=0.9982;RSQ=0.6405;ERATE=0.0007;THETA=0.0021;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25847848 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.751;LDAF=0.0188;AVGPOST=0.9900;RSQ=0.7954;ERATE=0.0005;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 25847880 . CG C 283 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0055;AVGPOST=0.9989;RSQ=0.9198;ERATE=0.0004;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 25847918 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0680;AVGPOST=0.9987;RSQ=0.9930;ERATE=0.0004;THETA=0.0009;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 25848113 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0686;AVGPOST=0.9974;RSQ=0.9881;ERATE=0.0003;THETA=0.0025;AC=151;AN=2184 GT:DS:GL:BD 0.06913920 0 1 25848114 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0674;AVGPOST=0.9972;RSQ=0.9852;ERATE=0.0005;THETA=0.0005;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 25848176 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8101;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25848398 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.906;LDAF=0.0211;AVGPOST=0.9946;RSQ=0.8983;ERATE=0.0004;THETA=0.0008;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 25848424 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3989;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25848524 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8845;ERATE=0.0005;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25848554 rs68138118 ACT A 8230 PASS INDEL;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0695;AVGPOST=0.9956;RSQ=0.9757;ERATE=0.0007;THETA=0.0009;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 25848603 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0167;AVGPOST=0.9977;RSQ=0.9490;ERATE=0.0005;THETA=0.0008;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 25848689 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.836;LDAF=0.0162;AVGPOST=0.9948;RSQ=0.8804;ERATE=0.0003;THETA=0.0010;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 25848702 . T TCA 35 PASS INDEL;BAVGPOST=0.999;BRSQ=0.642;LDAF=0.0020;AVGPOST=0.9969;RSQ=0.2983;ERATE=0.0007;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25848739 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0688;AVGPOST=0.9984;RSQ=0.9911;ERATE=0.0004;THETA=0.0004;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 25848808 . TC T 5874 PASS INDEL;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0705;AVGPOST=0.9961;RSQ=0.9783;ERATE=0.0008;THETA=0.0010;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 25848814 . CA C 12412 PASS INDEL;BAVGPOST=0.967;BRSQ=0.203;LDAF=0.9472;AVGPOST=0.9106;RSQ=0.2971;ERATE=0.0069;THETA=0.0008;AC=2148;AN=2184 GT:DS:GL:BD 0.98351645 1 1 25848985 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25848989 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6565;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25849053 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6027;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25849066 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.824;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7408;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25849278 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.907;LDAF=0.0065;AVGPOST=0.9980;RSQ=0.9040;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 25849543 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.822;LDAF=0.0067;AVGPOST=0.9973;RSQ=0.8423;ERATE=0.0009;THETA=0.0010;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 25849743 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9346;ERATE=0.0003;THETA=0.0032;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25849851 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5077;AVGPOST=0.9956;RSQ=0.9935;ERATE=0.0006;THETA=0.0010;AC=1109;AN=2184 GT:DS:GL:BD 0.50778389 1 1 25849871 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0031;AVGPOST=0.9989;RSQ=0.8625;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25849872 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0033;AVGPOST=0.9988;RSQ=0.8532;ERATE=0.0005;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25849883 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25849942 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.987;LDAF=0.4738;AVGPOST=0.9952;RSQ=0.9930;ERATE=0.0009;THETA=0.0005;AC=1036;AN=2184 GT:DS:GL:BD 0.47435898 0 1 25849968 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0052;AVGPOST=0.9996;RSQ=0.9623;ERATE=0.0004;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 25850068 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5654;ERATE=0.0005;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25850206 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4902;AVGPOST=0.9982;RSQ=0.9973;ERATE=0.0006;THETA=0.0011;AC=1071;AN=2184 GT:DS:GL:BD 0.49038461 0 1 25850222 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0053;AVGPOST=0.9979;RSQ=0.8410;ERATE=0.0007;THETA=0.0033;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 25850230 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5467;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25850244 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.6983;ERATE=0.0012;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25850360 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7592;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25850361 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.599;LDAF=0.0021;AVGPOST=0.9973;RSQ=0.5169;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25850416 . TA T 12 PASS INDEL;BAVGPOST=0.999;BRSQ=0.618;LDAF=0.0044;AVGPOST=0.9960;RSQ=0.6375;ERATE=0.0005;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25850550 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0120;AVGPOST=0.9984;RSQ=0.9379;ERATE=0.0005;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 25850618 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.5857;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25850655 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4871;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25850700 . G GA 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5035;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25850814 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0955;AVGPOST=0.9995;RSQ=0.9980;ERATE=0.0004;THETA=0.0010;AC=209;AN=2184 GT:DS:GL:BD 0.09569597 0 1 25850876 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25850913 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.889;LDAF=0.0102;AVGPOST=0.9974;RSQ=0.9044;ERATE=0.0003;THETA=0.0007;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 25850917 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5187;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25850951 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25850996 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0063;AVGPOST=0.9993;RSQ=0.9533;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 25851080 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7560;ERATE=0.0014;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25851194 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8225;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25851239 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9199;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25851407 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8540;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25851420 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0948;AVGPOST=0.9980;RSQ=0.9924;ERATE=0.0004;THETA=0.0006;AC=207;AN=2184 GT:DS:GL:BD 0.09478022 0 1 25851559 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6240;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25851598 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0022;AVGPOST=0.9989;RSQ=0.7677;ERATE=0.0006;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25851623 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25851629 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25851670 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7760;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25851681 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9865;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25851870 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6637;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25851962 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25851977 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.1981;AVGPOST=0.9916;RSQ=0.9832;ERATE=0.0005;THETA=0.0007;AC=431;AN=2184 GT:DS:GL:BD 0.19734432 0 1 25851988 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0064;AVGPOST=0.9977;RSQ=0.8692;ERATE=0.0003;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 25852103 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0055;AVGPOST=0.9990;RSQ=0.9327;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 25852210 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5970;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25852219 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.0915;AVGPOST=0.9978;RSQ=0.9912;ERATE=0.0005;THETA=0.0003;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 25852244 . T TA 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5064;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25852323 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25852351 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25852428 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.925;LDAF=0.0210;AVGPOST=0.9959;RSQ=0.9225;ERATE=0.0004;THETA=0.0011;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 25852484 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0078;AVGPOST=0.9996;RSQ=0.9777;ERATE=0.0004;THETA=0.0009;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 25852593 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.4871;AVGPOST=0.9952;RSQ=0.9939;ERATE=0.0007;THETA=0.0004;AC=1065;AN=2184 GT:DS:GL:BD 0.48763737 0 1 25852674 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9989;RSQ=0.9280;ERATE=0.0005;THETA=0.0011;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 25852691 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.866;LDAF=0.0100;AVGPOST=0.9971;RSQ=0.8857;ERATE=0.0004;THETA=0.0022;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 25852759 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25852854 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.829;LDAF=0.0118;AVGPOST=0.9926;RSQ=0.7261;ERATE=0.0006;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 25852923 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.988;LDAF=0.5826;AVGPOST=0.9957;RSQ=0.9926;ERATE=0.0009;THETA=0.0003;AC=1277;AN=2184 GT:DS:GL:BD 0.58470696 1 1 25853000 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0040;AVGPOST=0.9941;RSQ=0.3937;ERATE=0.0010;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25853066 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.649;LDAF=0.0088;AVGPOST=0.9935;RSQ=0.7001;ERATE=0.0008;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 25853220 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5837;AVGPOST=0.9982;RSQ=0.9968;ERATE=0.0005;THETA=0.0015;AC=1277;AN=2184 GT:DS:GL:BD 0.58470696 1 1 25853238 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8460;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25853251 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0065;AVGPOST=0.9996;RSQ=0.9734;ERATE=0.0003;THETA=0.0010;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 25853344 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9612;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25853435 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25853455 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25853561 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0215;AVGPOST=0.9994;RSQ=0.9899;ERATE=0.0003;THETA=0.0004;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 25853675 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0218;AVGPOST=0.9995;RSQ=0.9891;ERATE=0.0003;THETA=0.0018;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 25853718 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8519;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25853873 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6227;ERATE=0.0003;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25853941 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0963;AVGPOST=0.9990;RSQ=0.9961;ERATE=0.0004;THETA=0.0004;AC=211;AN=2184 GT:DS:GL:BD 0.09661172 0 1 25854028 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0184;AVGPOST=0.9989;RSQ=0.9752;ERATE=0.0005;THETA=0.0009;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 25854055 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0123;AVGPOST=0.9988;RSQ=0.9565;ERATE=0.0005;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 25854129 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0037;AVGPOST=0.9973;RSQ=0.6984;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25854135 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0220;AVGPOST=0.9983;RSQ=0.9694;ERATE=0.0008;THETA=0.0006;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 25854189 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0003;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25854568 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0576;AVGPOST=0.9939;RSQ=0.9621;ERATE=0.0004;THETA=0.0010;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 25854608 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.849;LDAF=0.0458;AVGPOST=0.9844;RSQ=0.8653;ERATE=0.0005;THETA=0.0005;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 25854636 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7883;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25854672 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0044;AVGPOST=0.9982;RSQ=0.8302;ERATE=0.0004;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25854678 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6952;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25854725 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0021;AVGPOST=0.9981;RSQ=0.6408;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25854870 . C CAG 194 PASS INDEL;BAVGPOST=0.999;BRSQ=0.668;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.3584;ERATE=0.0006;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25854943 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0584;AVGPOST=0.9973;RSQ=0.9843;ERATE=0.0004;THETA=0.0010;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 25854984 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.775;LDAF=0.0089;AVGPOST=0.9942;RSQ=0.7408;ERATE=0.0004;THETA=0.0019;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 25855013 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0055;AVGPOST=0.9964;RSQ=0.7375;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25855025 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.802;LDAF=0.0130;AVGPOST=0.9941;RSQ=0.8070;ERATE=0.0005;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 25855074 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0040;AVGPOST=0.9980;RSQ=0.8115;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25855093 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0031;AVGPOST=0.9994;RSQ=0.9223;ERATE=0.0004;THETA=0.0024;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25855094 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5785;AVGPOST=0.9984;RSQ=0.9972;ERATE=0.0005;THETA=0.0006;AC=1265;AN=2184 GT:DS:GL:BD 0.57921243 1 1 25855124 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0214;AVGPOST=0.9992;RSQ=0.9837;ERATE=0.0004;THETA=0.0007;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 25855133 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.751;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5403;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25855249 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.655;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5618;ERATE=0.0009;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25855290 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4019;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25855340 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9992;RSQ=0.9467;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 25855418 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0571;AVGPOST=0.9989;RSQ=0.9941;ERATE=0.0003;THETA=0.0007;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 25855421 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0065;AVGPOST=0.9999;RSQ=0.9898;ERATE=0.0004;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 25855436 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5771;AVGPOST=0.9979;RSQ=0.9964;ERATE=0.0004;THETA=0.0003;AC=1263;AN=2184 GT:DS:GL:BD 0.57829672 1 1 25855467 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0023;AVGPOST=0.9994;RSQ=0.8818;ERATE=0.0005;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25855487 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7809;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25855597 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.6058;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25855661 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0035;AVGPOST=0.9989;RSQ=0.8636;ERATE=0.0004;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25856102 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0070;AVGPOST=0.9986;RSQ=0.9087;ERATE=0.0006;THETA=0.0009;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 25856270 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.763;LDAF=0.0031;AVGPOST=0.9973;RSQ=0.6328;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25856295 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0078;AVGPOST=0.9985;RSQ=0.9096;ERATE=0.0006;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 25856309 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.701;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4512;ERATE=0.0006;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25856376 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0215;AVGPOST=0.9986;RSQ=0.9717;ERATE=0.0007;THETA=0.0004;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 25856402 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5510;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25856495 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.754;LDAF=0.0032;AVGPOST=0.9976;RSQ=0.6923;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25856579 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0216;AVGPOST=0.9960;RSQ=0.9182;ERATE=0.0010;THETA=0.0004;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 25856754 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.4844;AVGPOST=0.9912;RSQ=0.9883;ERATE=0.0009;THETA=0.0006;AC=1058;AN=2184 GT:DS:GL:BD 0.48443222 0 1 25856865 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0190;AVGPOST=0.9981;RSQ=0.9676;ERATE=0.0004;THETA=0.0014;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 25856865 . C CG 133 PASS INDEL;BAVGPOST=0.999;BRSQ=0.606;LDAF=0.0026;AVGPOST=0.9966;RSQ=0.4083;ERATE=0.0009;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25856932 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4362;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25857072 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0056;AVGPOST=0.9988;RSQ=0.9100;ERATE=0.0004;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 25857210 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.814;LDAF=0.0070;AVGPOST=0.9978;RSQ=0.8571;ERATE=0.0005;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 25857449 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0027;AVGPOST=0.9978;RSQ=0.6405;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25857488 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.5967;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25857570 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.964;LDAF=0.0194;AVGPOST=0.9947;RSQ=0.9079;ERATE=0.0006;THETA=0.0006;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 25857831 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7504;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25858030 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0047;AVGPOST=0.9983;RSQ=0.8622;ERATE=0.0004;THETA=0.0013;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25858062 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7566;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25858083 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4719;AVGPOST=0.9975;RSQ=0.9961;ERATE=0.0008;THETA=0.0010;AC=1032;AN=2184 GT:DS:GL:BD 0.47252747 0 1 25858300 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5697;AVGPOST=0.9980;RSQ=0.9965;ERATE=0.0005;THETA=0.0005;AC=1246;AN=2184 GT:DS:GL:BD 0.57051283 1 1 25858325 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.5689;AVGPOST=0.9973;RSQ=0.9954;ERATE=0.0005;THETA=0.0004;AC=1245;AN=2184 GT:DS:GL:BD 0.57005495 1 1 25858328 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0045;AVGPOST=0.9929;RSQ=0.4710;ERATE=0.0007;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25858340 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.659;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.4878;ERATE=0.0007;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25858381 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.760;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.4772;ERATE=0.0006;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25858396 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.662;LDAF=0.0024;AVGPOST=0.9973;RSQ=0.5229;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25858505 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0003;THETA=0.0028;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25858593 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.614;LDAF=0.0230;AVGPOST=0.9749;RSQ=0.5738;ERATE=0.0104;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 25858624 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0028;AVGPOST=0.9997;RSQ=0.9538;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25858651 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7996;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25858818 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7217;ERATE=0.0003;THETA=0.0040;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25858971 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8260;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25859024 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4481;AVGPOST=0.9966;RSQ=0.9957;ERATE=0.0004;THETA=0.0005;AC=978;AN=2184 GT:DS:GL:BD 0.44780219 0 1 25859065 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9442;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25859271 . TGA T 46 PASS INDEL;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5858;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25859300 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5463;AVGPOST=0.9984;RSQ=0.9973;ERATE=0.0005;THETA=0.0007;AC=1195;AN=2184 GT:DS:GL:BD 0.54716116 1 1 25859308 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9481;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25859420 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0580;AVGPOST=0.9987;RSQ=0.9924;ERATE=0.0003;THETA=0.0004;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 25859585 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8295;ERATE=0.0004;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25859782 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.940;LDAF=0.9910;AVGPOST=0.9957;RSQ=0.7977;ERATE=0.0005;THETA=0.0003;AC=2169;AN=2184 GT:DS:GL:BD 0.99313188 1 1 25859797 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.743;LDAF=0.0030;AVGPOST=0.9979;RSQ=0.7447;ERATE=0.0006;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25859821 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6271;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25860058 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.603;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7882;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25860115 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.950;LDAF=0.0210;AVGPOST=0.9991;RSQ=0.9818;ERATE=0.0004;THETA=0.0005;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 25860312 . CTGTGTTT C 159 PASS INDEL;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4487;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25860516 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4728;AVGPOST=0.9972;RSQ=0.9954;ERATE=0.0007;THETA=0.0008;AC=1032;AN=2184 GT:DS:GL:BD 0.47252747 0 1 25860542 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6656;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25860646 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7289;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25860669 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5369;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25860679 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0064;AVGPOST=0.9991;RSQ=0.9508;ERATE=0.0003;THETA=0.0016;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 25860683 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7290;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25860718 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9999;AVGPOST=0.9999;RSQ=0.0499;ERATE=0.0003;THETA=0.0019;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 25860729 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25860779 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8329;ERATE=0.0004;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25860781 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25860786 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5869;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25860910 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6468;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25860915 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5713;AVGPOST=0.9979;RSQ=0.9963;ERATE=0.0005;THETA=0.0004;AC=1249;AN=2184 GT:DS:GL:BD 0.57188642 1 1 25860940 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6081;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25861002 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6340;ERATE=0.0005;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25861171 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7593;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25861198 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0213;AVGPOST=0.9995;RSQ=0.9906;ERATE=0.0003;THETA=0.0011;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 25861292 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25861298 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.680;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5320;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25861430 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.711;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6513;ERATE=0.0005;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25861445 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.976;LDAF=0.0210;AVGPOST=0.9986;RSQ=0.9754;ERATE=0.0004;THETA=0.0008;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 25861525 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.704;LDAF=0.0032;AVGPOST=0.9967;RSQ=0.5703;ERATE=0.0005;THETA=0.0070;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25861650 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7335;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25861892 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.559;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25862179 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25862190 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25862191 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6856;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25862192 . TA T 44 PASS INDEL;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25862223 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6365;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25862274 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.880;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7652;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25862460 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0033;AVGPOST=0.9996;RSQ=0.9476;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25862606 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0202;AVGPOST=0.9995;RSQ=0.9899;ERATE=0.0004;THETA=0.0004;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 25862688 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0202;AVGPOST=0.9998;RSQ=0.9950;ERATE=0.0003;THETA=0.0009;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 25862966 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8016;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25863009 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8552;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25863010 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25863094 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8802;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25863179 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.5778;AVGPOST=0.9938;RSQ=0.9902;ERATE=0.0010;THETA=0.0009;AC=1263;AN=2184 GT:DS:GL:BD 0.57829672 1 1 25863267 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0052;AVGPOST=0.9989;RSQ=0.9137;ERATE=0.0005;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 25863268 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0047;AVGPOST=0.9932;RSQ=0.4044;ERATE=0.0021;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25863377 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0915;AVGPOST=0.9984;RSQ=0.9934;ERATE=0.0005;THETA=0.0011;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 25863449 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25863521 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.852;LDAF=0.0105;AVGPOST=0.9959;RSQ=0.8352;ERATE=0.0006;THETA=0.0007;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 25863694 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.5792;AVGPOST=0.9928;RSQ=0.9889;ERATE=0.0005;THETA=0.0039;AC=1265;AN=2184 GT:DS:GL:BD 0.57921243 1 1 25863795 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5290;ERATE=0.0005;THETA=0.0053;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25863840 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.765;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8255;ERATE=0.0004;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25863915 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7422;ERATE=0.0005;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25864032 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0907;AVGPOST=0.9992;RSQ=0.9966;ERATE=0.0003;THETA=0.0012;AC=198;AN=2184 GT:DS:GL:BD 0.09065934 0 1 25864035 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.803;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7701;ERATE=0.0004;THETA=0.0042;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25864228 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7834;ERATE=0.0004;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25864335 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.823;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8622;ERATE=0.0003;THETA=0.0055;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25864379 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0061;AVGPOST=0.9989;RSQ=0.9288;ERATE=0.0004;THETA=0.0025;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 25864400 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0046;AVGPOST=0.9996;RSQ=0.9635;ERATE=0.0003;THETA=0.0012;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 25864515 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9991;RSQ=0.9451;ERATE=0.0003;THETA=0.0015;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 25864581 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.724;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.6722;ERATE=0.0010;THETA=0.0051;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25864816 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.8974;ERATE=0.0007;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25864871 rs113534347 A AGT 18578 PASS INDEL;BAVGPOST=0.994;BRSQ=0.966;LDAF=0.0832;AVGPOST=0.9947;RSQ=0.9771;ERATE=0.0005;THETA=0.0010;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 25865093 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25865206 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0053;AVGPOST=0.9993;RSQ=0.9400;ERATE=0.0004;THETA=0.0012;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 25865298 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.717;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5650;ERATE=0.0005;THETA=0.0058;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25865419 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.726;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5809;ERATE=0.0004;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25865430 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0075;AVGPOST=0.9984;RSQ=0.9158;ERATE=0.0004;THETA=0.0017;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 25865455 rs113156949 CT C 6589 PASS INDEL;BAVGPOST=0.988;BRSQ=0.944;LDAF=0.0792;AVGPOST=0.9923;RSQ=0.9690;ERATE=0.0008;THETA=0.0010;AC=169;AN=2184 GT:DS:GL:BD 0.07738096 0 1 25865462 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.942;LDAF=0.9914;AVGPOST=0.9960;RSQ=0.7922;ERATE=0.0005;THETA=0.0152;AC=2169;AN=2184 GT:DS:GL:BD 0.99313188 1 1 25865476 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0110;AVGPOST=0.9902;RSQ=0.6604;ERATE=0.0008;THETA=0.0046;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 25865497 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.901;LDAF=0.0079;AVGPOST=0.9954;RSQ=0.8028;ERATE=0.0006;THETA=0.0010;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 25865507 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.867;LDAF=0.0029;AVGPOST=0.9959;RSQ=0.4830;ERATE=0.0006;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25865512 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.682;LDAF=0.0083;AVGPOST=0.9943;RSQ=0.7006;ERATE=0.0010;THETA=0.0032;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 25865650 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.982;LDAF=0.0815;AVGPOST=0.9923;RSQ=0.9671;ERATE=0.0006;THETA=0.0037;AC=174;AN=2184 GT:DS:GL:BD 0.07967033 0 1 25865782 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5655;ERATE=0.0005;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25865871 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0837;AVGPOST=0.9946;RSQ=0.9779;ERATE=0.0008;THETA=0.0031;AC=182;AN=2184 GT:DS:GL:BD 0.08333334 0 1 25865942 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.559;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6122;ERATE=0.0005;THETA=0.0158;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25865970 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.973;LDAF=0.0856;AVGPOST=0.9875;RSQ=0.9509;ERATE=0.0011;THETA=0.0046;AC=185;AN=2184 GT:DS:GL:BD 0.08470696 0 1 25866055 . TC T 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4534;ERATE=0.0005;THETA=0.0240;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25866120 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5618;ERATE=0.0004;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25866167 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.945;LDAF=0.0353;AVGPOST=0.9953;RSQ=0.9484;ERATE=0.0007;THETA=0.0050;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 25866206 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0153;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25866214 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9064;ERATE=0.0003;THETA=0.0066;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25866358 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0053;AVGPOST=0.9994;RSQ=0.9581;ERATE=0.0006;THETA=0.0155;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 25866395 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6523;ERATE=0.0004;THETA=0.0218;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25866496 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7821;ERATE=0.0006;THETA=0.0329;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25866748 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25866753 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7210;ERATE=0.0003;THETA=0.0068;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25866793 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.949;BRSQ=0.916;LDAF=0.3657;AVGPOST=0.9378;RSQ=0.9111;ERATE=0.0236;THETA=0.0155;AC=788;AN=2184 GT:DS:GL:BD 0.36080587 0 1 25866838 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.941;BRSQ=0.899;LDAF=0.6212;AVGPOST=0.9360;RSQ=0.9053;ERATE=0.0220;THETA=0.0238;AC=1365;AN=2184 GT:DS:GL:BD 0.62500000 1 1 25866912 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0004;THETA=0.0173;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25866997 . A AT 1339 PASS INDEL;BAVGPOST=0.994;BRSQ=0.766;LDAF=0.0119;AVGPOST=0.9923;RSQ=0.7388;ERATE=0.0008;THETA=0.0142;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 25867000 . TTTTTCTTTTC T 1761 PASS INDEL;BAVGPOST=0.990;BRSQ=0.758;LDAF=0.0179;AVGPOST=0.9893;RSQ=0.7919;ERATE=0.0006;THETA=0.0074;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 25867005 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.822;LDAF=0.0026;AVGPOST=0.9976;RSQ=0.6341;ERATE=0.0005;THETA=0.0074;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25867096 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.477;LDAF=0.0121;AVGPOST=0.9869;RSQ=0.5418;ERATE=0.0010;THETA=0.0023;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 25867264 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.537;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4672;ERATE=0.0004;THETA=0.0190;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25867295 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.938;LDAF=0.9927;AVGPOST=0.9974;RSQ=0.8462;ERATE=0.0004;THETA=0.0100;AC=2170;AN=2184 GT:DS:GL:BD 0.99358976 1 1 25867304 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0144;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25867327 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7102;ERATE=0.0005;THETA=0.0137;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25867359 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0005;THETA=0.0031;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25867562 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.5787;ERATE=0.0005;THETA=0.0101;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25867577 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0022;AVGPOST=0.9976;RSQ=0.5819;ERATE=0.0006;THETA=0.0057;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25867593 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7583;ERATE=0.0004;THETA=0.0060;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25867638 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6239;ERATE=0.0005;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25867879 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0005;THETA=0.0105;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25867923 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8819;ERATE=0.0007;THETA=0.0093;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25868090 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.641;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4428;ERATE=0.0005;THETA=0.0054;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25868115 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.938;LDAF=0.0397;AVGPOST=0.9945;RSQ=0.9498;ERATE=0.0004;THETA=0.0031;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 25868130 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7554;ERATE=0.0006;THETA=0.0033;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25868132 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6866;ERATE=0.0003;THETA=0.0069;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25868217 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7860;ERATE=0.0005;THETA=0.0066;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25868219 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0065;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25868247 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.7153;ERATE=0.0004;THETA=0.0096;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25868309 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.797;LDAF=0.0029;AVGPOST=0.9981;RSQ=0.7350;ERATE=0.0012;THETA=0.0039;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25868496 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25868629 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.773;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0004;THETA=0.0038;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25868649 . CTGTGGCTTGGA C 474 PASS INDEL;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25868655 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25868727 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7600;ERATE=0.0003;THETA=0.0181;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25868756 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7805;ERATE=0.0012;THETA=0.0037;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25868815 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6915;ERATE=0.0004;THETA=0.0076;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25868887 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0080;AVGPOST=0.9988;RSQ=0.9503;ERATE=0.0003;THETA=0.0066;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 25868924 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7454;ERATE=0.0005;THETA=0.0038;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25868952 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8496;ERATE=0.0003;THETA=0.0057;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25868957 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.826;LDAF=0.0064;AVGPOST=0.9977;RSQ=0.8516;ERATE=0.0004;THETA=0.0022;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 25868970 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6034;ERATE=0.0003;THETA=0.0088;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25869026 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9201;ERATE=0.0003;THETA=0.0046;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25869202 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.971;LDAF=0.0595;AVGPOST=0.9944;RSQ=0.9646;ERATE=0.0003;THETA=0.0041;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 25869250 . A AT 29 PASS INDEL;BAVGPOST=0.999;BRSQ=0.693;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.5319;ERATE=0.0006;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25869262 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.993;LDAF=0.1959;AVGPOST=0.9852;RSQ=0.9756;ERATE=0.0005;THETA=0.0005;AC=433;AN=2184 GT:DS:GL:BD 0.19826007 0 1 25869496 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.3721;ERATE=0.0007;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25869538 . A AG 52 PASS INDEL;BAVGPOST=0.999;BRSQ=0.683;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5556;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25869554 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0463;AVGPOST=0.9969;RSQ=0.9740;ERATE=0.0004;THETA=0.0033;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 25869575 . A AGT 1618 PASS INDEL;BAVGPOST=0.992;BRSQ=0.887;LDAF=0.0399;AVGPOST=0.9874;RSQ=0.8791;ERATE=0.0006;THETA=0.0046;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 25869584 . G GTA 3832 PASS INDEL;BAVGPOST=0.991;BRSQ=0.889;LDAF=0.0420;AVGPOST=0.9898;RSQ=0.9018;ERATE=0.0006;THETA=0.0034;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 25869597 . T TAC 419 PASS INDEL;BAVGPOST=0.993;BRSQ=0.870;LDAF=0.0324;AVGPOST=0.9851;RSQ=0.8152;ERATE=0.0004;THETA=0.0004;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 25869616 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25869707 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25869730 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6637;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25869836 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6025;ERATE=0.0004;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25869906 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.5270;ERATE=0.0005;THETA=0.0031;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25870018 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.119;LDAF=0.9755;AVGPOST=0.9592;RSQ=0.2749;ERATE=0.0025;THETA=0.0030;AC=2163;AN=2184 GT:DS:GL:BD 0.99038464 1 1 25870144 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.676;LDAF=0.0108;AVGPOST=0.9916;RSQ=0.6535;ERATE=0.0013;THETA=0.0015;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 25870344 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.699;LDAF=0.0423;AVGPOST=0.9381;RSQ=0.3649;ERATE=0.0059;THETA=0.0032;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 25870507 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0195;AVGPOST=0.9889;RSQ=0.7513;ERATE=0.0011;THETA=0.0078;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 25870597 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.517;LDAF=0.0152;AVGPOST=0.9886;RSQ=0.6955;ERATE=0.0007;THETA=0.0012;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 25870775 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0210;AVGPOST=0.9933;RSQ=0.8649;ERATE=0.0007;THETA=0.0006;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 25870876 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.746;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4232;ERATE=0.0004;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25870968 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.684;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6414;ERATE=0.0006;THETA=0.0031;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25871082 . T TC 319 PASS INDEL;BAVGPOST=0.998;BRSQ=0.808;LDAF=0.0079;AVGPOST=0.9978;RSQ=0.8689;ERATE=0.0007;THETA=0.0021;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 25871179 . CGTT C 634 PASS INDEL;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0087;AVGPOST=0.9970;RSQ=0.8551;ERATE=0.0006;THETA=0.0014;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 25871363 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0109;AVGPOST=0.9992;RSQ=0.9684;ERATE=0.0004;THETA=0.0049;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 25871417 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.722;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4529;ERATE=0.0006;THETA=0.0065;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25871481 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0136;AVGPOST=0.9971;RSQ=0.9102;ERATE=0.0007;THETA=0.0022;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 25871483 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.917;LDAF=0.0386;AVGPOST=0.9935;RSQ=0.9378;ERATE=0.0005;THETA=0.0009;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 25871521 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0124;AVGPOST=0.9983;RSQ=0.9452;ERATE=0.0005;THETA=0.0019;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 25871630 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.0716;AVGPOST=0.9979;RSQ=0.9884;ERATE=0.0003;THETA=0.0010;AC=155;AN=2184 GT:DS:GL:BD 0.07097070 0 1 25871722 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25871829 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0175;AVGPOST=0.9995;RSQ=0.9877;ERATE=0.0004;THETA=0.0012;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 25871853 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6213;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25871999 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25872136 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0175;AVGPOST=0.9995;RSQ=0.9874;ERATE=0.0003;THETA=0.0005;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 25872156 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.962;LDAF=0.0662;AVGPOST=0.9921;RSQ=0.9546;ERATE=0.0007;THETA=0.0009;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 25872180 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.871;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8208;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25872187 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0039;AVGPOST=0.9950;RSQ=0.5113;ERATE=0.0005;THETA=0.0028;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25872194 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0020;AVGPOST=0.9983;RSQ=0.6589;ERATE=0.0005;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25872197 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.6722;ERATE=0.0005;THETA=0.0027;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25872301 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7525;ERATE=0.0003;THETA=0.0063;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25872403 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0029;AVGPOST=0.9980;RSQ=0.7580;ERATE=0.0003;THETA=0.0030;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25872467 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1919;AVGPOST=0.9979;RSQ=0.9962;ERATE=0.0004;THETA=0.0037;AC=419;AN=2184 GT:DS:GL:BD 0.19184981 0 1 25872479 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0004;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25872650 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.732;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.5617;ERATE=0.0006;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25872707 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.5264;ERATE=0.0006;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25872762 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0168;AVGPOST=0.9995;RSQ=0.9906;ERATE=0.0003;THETA=0.0015;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 25873145 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.834;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7978;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25873201 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4989;ERATE=0.0004;THETA=0.0043;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25873338 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0074;AVGPOST=0.9996;RSQ=0.9765;ERATE=0.0003;THETA=0.0026;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 25873339 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5770;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25873394 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0004;THETA=0.0042;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25873670 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0028;AVGPOST=0.9988;RSQ=0.8001;ERATE=0.0005;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25873711 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.576;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.4725;ERATE=0.0004;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25873712 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4385;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25873800 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.742;LDAF=0.0043;AVGPOST=0.9974;RSQ=0.7408;ERATE=0.0004;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25873888 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.515;LDAF=0.0059;AVGPOST=0.9908;RSQ=0.3633;ERATE=0.0020;THETA=0.0034;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25873931 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.765;LDAF=0.0037;AVGPOST=0.9954;RSQ=0.5129;ERATE=0.0011;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25873986 . A AATAG 4390 PASS INDEL;BAVGPOST=0.910;BRSQ=0.574;LDAF=0.1418;AVGPOST=0.8926;RSQ=0.6215;ERATE=0.0194;THETA=0.0084;AC=229;AN=2184 GT:DS:GL:BD 0.10485348 0 1 25873990 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.908;LDAF=0.0545;AVGPOST=0.9936;RSQ=0.9547;ERATE=0.0006;THETA=0.0018;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 25874064 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.984;LDAF=0.1981;AVGPOST=0.9942;RSQ=0.9900;ERATE=0.0007;THETA=0.0033;AC=432;AN=2184 GT:DS:GL:BD 0.19780220 0 1 25874122 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0138;AVGPOST=0.9925;RSQ=0.7698;ERATE=0.0014;THETA=0.0010;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 25874265 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7324;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25874270 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0031;AVGPOST=0.9988;RSQ=0.8333;ERATE=0.0004;THETA=0.0018;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25874308 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7386;ERATE=0.0005;THETA=0.0026;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25874377 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.895;LDAF=0.0076;AVGPOST=0.9972;RSQ=0.8541;ERATE=0.0006;THETA=0.0016;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 25874676 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0455;AVGPOST=0.9982;RSQ=0.9838;ERATE=0.0004;THETA=0.0010;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 25874688 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1833;AVGPOST=0.9998;RSQ=0.9995;ERATE=0.0003;THETA=0.0010;AC=400;AN=2184 GT:DS:GL:BD 0.18315019 0 1 25874689 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0005;THETA=0.0027;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25874790 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.688;LDAF=0.0007;AVGPOST=0.9989;RSQ=0.4389;ERATE=0.0004;THETA=0.0032;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 25874826 rs36140414 C CT 915 PASS INDEL;BAVGPOST=0.386;BRSQ=0.069;LDAF=0.5614;AVGPOST=0.5679;RSQ=0.2463;ERATE=0.0306;THETA=0.0013;AC=1369;AN=2184 GT:DS:GL:BD 0.62683153 1 1 25874899 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1903;AVGPOST=0.9990;RSQ=0.9978;ERATE=0.0005;THETA=0.0014;AC=415;AN=2184 GT:DS:GL:BD 0.19001831 0 1 25874948 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5872;ERATE=0.0005;THETA=0.0021;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25874984 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.597;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.3514;ERATE=0.0009;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25875030 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.979;LDAF=0.1840;AVGPOST=0.9931;RSQ=0.9871;ERATE=0.0010;THETA=0.0014;AC=405;AN=2184 GT:DS:GL:BD 0.18543956 0 1 25875108 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1886;AVGPOST=0.9992;RSQ=0.9984;ERATE=0.0004;THETA=0.0014;AC=412;AN=2184 GT:DS:GL:BD 0.18864469 0 1 25875126 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.1903;AVGPOST=0.9973;RSQ=0.9957;ERATE=0.0004;THETA=0.0004;AC=415;AN=2184 GT:DS:GL:BD 0.19001831 0 1 25875149 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9426;ERATE=0.0004;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25875376 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0420;AVGPOST=0.9992;RSQ=0.9910;ERATE=0.0005;THETA=0.0015;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 25875466 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8901;ERATE=0.0005;THETA=0.0019;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25875514 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6705;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25875650 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1894;AVGPOST=0.9991;RSQ=0.9982;ERATE=0.0004;THETA=0.0030;AC=413;AN=2184 GT:DS:GL:BD 0.18910256 0 1 25875669 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8101;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25875682 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1908;AVGPOST=0.9991;RSQ=0.9980;ERATE=0.0004;THETA=0.0009;AC=416;AN=2184 GT:DS:GL:BD 0.19047619 0 1 25875756 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1913;AVGPOST=0.9978;RSQ=0.9957;ERATE=0.0007;THETA=0.0024;AC=417;AN=2184 GT:DS:GL:BD 0.19093406 0 1 25875920 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1905;AVGPOST=0.9993;RSQ=0.9985;ERATE=0.0004;THETA=0.0062;AC=416;AN=2184 GT:DS:GL:BD 0.19047619 0 1 25875976 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9905;ERATE=0.0003;THETA=0.0034;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 25876169 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1855;AVGPOST=0.9989;RSQ=0.9978;ERATE=0.0004;THETA=0.0029;AC=405;AN=2184 GT:DS:GL:BD 0.18543956 0 1 25876238 rs111451580 GGGCGGGT G 12206 PASS INDEL;BAVGPOST=0.976;BRSQ=0.924;LDAF=0.1314;AVGPOST=0.9908;RSQ=0.9737;ERATE=0.0009;THETA=0.0008;AC=287;AN=2184 GT:DS:GL:BD 0.13141026 0 1 25876330 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.799;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.6800;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25876340 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0577;AVGPOST=0.9992;RSQ=0.9937;ERATE=0.0003;THETA=0.0006;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 25876400 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0063;AVGPOST=0.9971;RSQ=0.8378;ERATE=0.0003;THETA=0.0015;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 25876407 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0207;AVGPOST=0.9995;RSQ=0.9894;ERATE=0.0004;THETA=0.0028;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 25876409 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0426;AVGPOST=0.9995;RSQ=0.9948;ERATE=0.0004;THETA=0.0022;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 25876463 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0707;AVGPOST=0.9984;RSQ=0.9901;ERATE=0.0005;THETA=0.0011;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 25876464 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0039;AVGPOST=0.9989;RSQ=0.8826;ERATE=0.0005;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25876497 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25876516 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0756;AVGPOST=0.9993;RSQ=0.9962;ERATE=0.0003;THETA=0.0019;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 25876547 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25876560 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0383;AVGPOST=0.9989;RSQ=0.9872;ERATE=0.0003;THETA=0.0006;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 25876640 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.666;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25876772 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8696;ERATE=0.0004;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25876858 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=1.0000;RSQ=0.9968;ERATE=0.0003;THETA=0.0034;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 25877142 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0216;AVGPOST=0.9994;RSQ=0.9890;ERATE=0.0003;THETA=0.0031;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 25877146 . TGAG T 212 PASS INDEL;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25877170 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9063;ERATE=0.0004;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25877251 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.6401;ERATE=0.0005;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25877317 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0380;AVGPOST=0.9998;RSQ=0.9971;ERATE=0.0003;THETA=0.0012;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 25877492 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0137;AVGPOST=0.9973;RSQ=0.9273;ERATE=0.0004;THETA=0.0008;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 25877505 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9763;ERATE=0.0003;THETA=0.0030;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25877509 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25877532 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0051;AVGPOST=0.9994;RSQ=0.9445;ERATE=0.0003;THETA=0.0012;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 25877573 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.904;LDAF=0.0444;AVGPOST=0.9927;RSQ=0.9365;ERATE=0.0033;THETA=0.0010;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 25877640 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25877757 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.777;LDAF=0.0055;AVGPOST=0.9977;RSQ=0.8500;ERATE=0.0009;THETA=0.0014;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 25877772 . AT A 18 PASS INDEL;BAVGPOST=0.999;BRSQ=0.786;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8359;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25877865 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25877947 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1411;AVGPOST=0.9980;RSQ=0.9956;ERATE=0.0004;THETA=0.0030;AC=307;AN=2184 GT:DS:GL:BD 0.14056776 0 1 25877954 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0046;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25878125 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9936;ERATE=0.0003;THETA=0.0018;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 25878199 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25878280 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.1976;AVGPOST=0.9989;RSQ=0.9980;ERATE=0.0004;THETA=0.0007;AC=431;AN=2184 GT:DS:GL:BD 0.19734432 0 1 25878299 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1342;AVGPOST=0.9990;RSQ=0.9971;ERATE=0.0003;THETA=0.0010;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 25878342 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8608;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25878494 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8462;ERATE=0.0003;THETA=0.0014;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25878528 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1033;AVGPOST=0.9992;RSQ=0.9969;ERATE=0.0006;THETA=0.0012;AC=226;AN=2184 GT:DS:GL:BD 0.10347985 0 1 25878596 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0115;AVGPOST=0.9989;RSQ=0.9667;ERATE=0.0004;THETA=0.0024;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 25878643 . G GA 93 PASS INDEL;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0019;AVGPOST=0.9970;RSQ=0.4171;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25878653 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.896;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8920;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25878732 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.1546;AVGPOST=0.9991;RSQ=0.9975;ERATE=0.0004;THETA=0.0013;AC=337;AN=2184 GT:DS:GL:BD 0.15430403 0 1 25878783 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25878785 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6364;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25878802 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.740;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.5740;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25878979 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0525;AVGPOST=0.9981;RSQ=0.9841;ERATE=0.0006;THETA=0.0016;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 25879125 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.630;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7202;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25879187 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0211;AVGPOST=0.9989;RSQ=0.9787;ERATE=0.0003;THETA=0.0029;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 25879193 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 25879297 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7129;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25879422 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.7360;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25879424 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25879512 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0168;AVGPOST=0.9991;RSQ=0.9757;ERATE=0.0004;THETA=0.0010;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 25879515 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.956;LDAF=0.0476;AVGPOST=0.9964;RSQ=0.9667;ERATE=0.0025;THETA=0.0009;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 25879519 . TCTC T 558 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0054;AVGPOST=0.9981;RSQ=0.8394;ERATE=0.0004;THETA=0.0012;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 25879548 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8116;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25879587 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.1174;AVGPOST=0.9947;RSQ=0.9837;ERATE=0.0005;THETA=0.0015;AC=255;AN=2184 GT:DS:GL:BD 0.11675824 0 1 25879609 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5025;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25879656 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1533;AVGPOST=0.9981;RSQ=0.9959;ERATE=0.0003;THETA=0.0018;AC=335;AN=2184 GT:DS:GL:BD 0.15338828 0 1 25879681 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8268;ERATE=0.0004;THETA=0.0075;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25879699 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0005;THETA=0.0062;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25879878 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0130;AVGPOST=0.9995;RSQ=0.9819;ERATE=0.0004;THETA=0.0020;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 25879894 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0717;AVGPOST=0.9987;RSQ=0.9925;ERATE=0.0005;THETA=0.0013;AC=156;AN=2184 GT:DS:GL:BD 0.07142857 0 1 25879916 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.902;LDAF=0.1119;AVGPOST=0.9750;RSQ=0.9110;ERATE=0.0009;THETA=0.0010;AC=227;AN=2184 GT:DS:GL:BD 0.10393773 0 1 25879959 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7754;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25880007 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0111;AVGPOST=0.9998;RSQ=0.9926;ERATE=0.0003;THETA=0.0020;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 25880024 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0043;AVGPOST=0.9987;RSQ=0.9069;ERATE=0.0003;THETA=0.0014;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25880026 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0003;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25880070 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0585;AVGPOST=0.9984;RSQ=0.9900;ERATE=0.0004;THETA=0.0038;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 25880119 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.850;LDAF=0.0473;AVGPOST=0.9839;RSQ=0.8524;ERATE=0.0006;THETA=0.0019;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 25880143 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6195;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25880155 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.727;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4794;ERATE=0.0005;THETA=0.0051;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25880189 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.653;LDAF=0.0040;AVGPOST=0.9971;RSQ=0.7370;ERATE=0.0004;THETA=0.0017;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25880194 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.1586;AVGPOST=0.9926;RSQ=0.9866;ERATE=0.0010;THETA=0.0035;AC=348;AN=2184 GT:DS:GL:BD 0.15934066 0 1 25880222 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.949;LDAF=0.0140;AVGPOST=0.9979;RSQ=0.9425;ERATE=0.0004;THETA=0.0037;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 25880371 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9290;ERATE=0.0003;THETA=0.0018;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25880378 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0004;THETA=0.0058;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25880379 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0114;AVGPOST=0.9991;RSQ=0.9695;ERATE=0.0004;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 25880392 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=0.9999;RSQ=0.9762;ERATE=0.0003;THETA=0.0044;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25880438 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25880546 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25880617 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9999;RSQ=0.9894;ERATE=0.0003;THETA=0.0012;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 25880625 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9882;ERATE=0.0003;THETA=0.0039;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25881053 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7128;ERATE=0.0005;THETA=0.0059;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25881114 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8951;ERATE=0.0005;THETA=0.0018;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25881487 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25881623 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7959;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25881624 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=0.9997;RSQ=0.9837;ERATE=0.0003;THETA=0.0059;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 25881667 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25881701 . TCA T 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0022;AVGPOST=0.9965;RSQ=0.3388;ERATE=0.0009;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25881723 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9703;ERATE=0.0003;THETA=0.0024;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25881758 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9824;ERATE=0.0003;THETA=0.0042;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25881765 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8877;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25881800 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.985;LDAF=0.0438;AVGPOST=0.9980;RSQ=0.9825;ERATE=0.0004;THETA=0.0033;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 25881828 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6196;ERATE=0.0004;THETA=0.0048;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25881866 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.734;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25881912 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.774;LDAF=0.0069;AVGPOST=0.9961;RSQ=0.7890;ERATE=0.0008;THETA=0.0028;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 25882126 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5736;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25882253 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8879;ERATE=0.0007;THETA=0.0038;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25882374 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0065;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25882524 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8771;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25882572 . AGGT A 456 PASS INDEL;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7540;ERATE=0.0004;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25882670 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.581;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6190;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25882739 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4466;ERATE=0.0005;THETA=0.0049;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25882748 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0131;AVGPOST=0.9975;RSQ=0.9268;ERATE=0.0004;THETA=0.0040;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 25882822 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6252;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25882846 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.747;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.7205;ERATE=0.0004;THETA=0.0023;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25882939 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.740;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5682;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25882943 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0121;AVGPOST=0.9976;RSQ=0.9286;ERATE=0.0005;THETA=0.0069;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 25882949 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.7073;ERATE=0.0004;THETA=0.0034;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25882960 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0383;AVGPOST=0.9986;RSQ=0.9860;ERATE=0.0003;THETA=0.0026;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 25882976 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9275;ERATE=0.0003;THETA=0.0020;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25883061 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0460;AVGPOST=0.9975;RSQ=0.9794;ERATE=0.0006;THETA=0.0016;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 25883201 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0047;AVGPOST=0.9994;RSQ=0.9407;ERATE=0.0003;THETA=0.0054;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 25883218 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25883223 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0004;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25883276 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25883311 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0059;AVGPOST=0.9991;RSQ=0.9334;ERATE=0.0006;THETA=0.0067;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 25883356 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7774;ERATE=0.0004;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25883515 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.9301;ERATE=0.0005;THETA=0.0086;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25883526 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25883591 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9905;ERATE=0.0003;THETA=0.0061;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 25883613 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0064;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0025;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 25883722 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25883731 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25883780 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0544;AVGPOST=0.9998;RSQ=0.9981;ERATE=0.0003;THETA=0.0056;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 25883820 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0399;AVGPOST=0.9987;RSQ=0.9902;ERATE=0.0003;THETA=0.0021;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 25883842 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0187;AVGPOST=0.9975;RSQ=0.9510;ERATE=0.0007;THETA=0.0125;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 25883857 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9503;ERATE=0.0004;THETA=0.0043;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25883879 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0253;AVGPOST=0.9991;RSQ=0.9840;ERATE=0.0003;THETA=0.0011;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 25883908 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0148;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25883957 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0175;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25883994 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.7003;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25884008 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0063;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25884069 . AT A 226 PASS INDEL;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.8075;ERATE=0.0004;THETA=0.0031;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25884078 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8629;ERATE=0.0003;THETA=0.0028;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25884109 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0035;AVGPOST=0.9984;RSQ=0.8114;ERATE=0.0012;THETA=0.0184;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25884134 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.955;LDAF=0.0398;AVGPOST=0.9950;RSQ=0.9520;ERATE=0.0010;THETA=0.0190;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 25884366 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0031;AVGPOST=0.9990;RSQ=0.8770;ERATE=0.0004;THETA=0.0103;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25884462 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.895;LDAF=0.0056;AVGPOST=0.9975;RSQ=0.8204;ERATE=0.0005;THETA=0.0102;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 25884492 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.958;BRSQ=0.930;LDAF=0.5393;AVGPOST=0.9559;RSQ=0.9409;ERATE=0.0014;THETA=0.0011;AC=1179;AN=2184 GT:DS:GL:BD 0.53983516 1 1 25884497 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.958;BRSQ=0.930;LDAF=0.5430;AVGPOST=0.9566;RSQ=0.9418;ERATE=0.0007;THETA=0.0106;AC=1187;AN=2184 GT:DS:GL:BD 0.54349816 1 1 25884502 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0021;AVGPOST=0.9988;RSQ=0.7646;ERATE=0.0004;THETA=0.0098;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25884559 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0004;THETA=0.0265;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25884560 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.923;LDAF=0.0157;AVGPOST=0.9962;RSQ=0.9059;ERATE=0.0006;THETA=0.0071;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 25884605 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0067;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25884607 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7883;ERATE=0.0003;THETA=0.0048;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25884609 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0068;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25884612 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0096;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25884619 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0128;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25884640 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.951;LDAF=0.0809;AVGPOST=0.9907;RSQ=0.9601;ERATE=0.0031;THETA=0.0049;AC=176;AN=2184 GT:DS:GL:BD 0.08058608 0 1 25884651 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.7916;ERATE=0.0006;THETA=0.0108;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25884835 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0065;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25884903 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0004;THETA=0.0074;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25884906 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7330;ERATE=0.0003;THETA=0.0121;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25884981 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.952;LDAF=0.0134;AVGPOST=0.9979;RSQ=0.9466;ERATE=0.0014;THETA=0.0158;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 25885004 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25885065 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7796;ERATE=0.0004;THETA=0.0208;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25885154 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0074;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25885258 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0202;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25885260 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0125;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25885341 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9267;ERATE=0.0003;THETA=0.0154;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25885472 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0100;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25885528 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.968;LDAF=0.5556;AVGPOST=0.9761;RSQ=0.9673;ERATE=0.0009;THETA=0.0053;AC=1210;AN=2184 GT:DS:GL:BD 0.55402929 1 1 25885569 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5898;ERATE=0.0004;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25885580 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9009;ERATE=0.0003;THETA=0.0057;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25885592 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.969;LDAF=0.4493;AVGPOST=0.9821;RSQ=0.9743;ERATE=0.0005;THETA=0.0003;AC=979;AN=2184 GT:DS:GL:BD 0.44826007 0 1 25885648 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.780;LDAF=0.0038;AVGPOST=0.9979;RSQ=0.7692;ERATE=0.0006;THETA=0.0037;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25885667 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7567;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25885699 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.909;LDAF=0.0182;AVGPOST=0.9956;RSQ=0.8975;ERATE=0.0008;THETA=0.0017;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 25885726 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.767;LDAF=0.0021;AVGPOST=0.9983;RSQ=0.6201;ERATE=0.0009;THETA=0.0040;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25885786 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25885839 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5623;ERATE=0.0004;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25885844 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5939;ERATE=0.0004;THETA=0.0042;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25886125 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0207;AVGPOST=0.9994;RSQ=0.9874;ERATE=0.0004;THETA=0.0028;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 25886289 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0041;AVGPOST=0.9990;RSQ=0.8936;ERATE=0.0004;THETA=0.0019;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25886347 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.801;LDAF=0.0104;AVGPOST=0.9959;RSQ=0.8305;ERATE=0.0005;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 25886405 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5149;ERATE=0.0005;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25886504 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0349;AVGPOST=0.9980;RSQ=0.9767;ERATE=0.0005;THETA=0.0003;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 25886591 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8078;ERATE=0.0006;THETA=0.0021;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25886625 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0207;AVGPOST=0.9996;RSQ=0.9921;ERATE=0.0003;THETA=0.0015;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 25886706 . CT C 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4251;ERATE=0.0004;THETA=0.0092;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25886807 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.599;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4746;ERATE=0.0006;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25887017 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.894;LDAF=0.0048;AVGPOST=0.9979;RSQ=0.8433;ERATE=0.0006;THETA=0.0027;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 25887053 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.951;LDAF=0.0128;AVGPOST=0.9990;RSQ=0.9681;ERATE=0.0005;THETA=0.0013;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 25887065 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.931;LDAF=0.0207;AVGPOST=0.9967;RSQ=0.9340;ERATE=0.0004;THETA=0.0006;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 25887230 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.799;LDAF=0.0037;AVGPOST=0.9986;RSQ=0.8239;ERATE=0.0006;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25887289 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7913;ERATE=0.0003;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25887420 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.708;LDAF=0.0023;AVGPOST=0.9979;RSQ=0.6305;ERATE=0.0004;THETA=0.0063;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25887450 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0212;AVGPOST=0.9994;RSQ=0.9900;ERATE=0.0003;THETA=0.0006;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 25887525 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.5348;AVGPOST=0.9915;RSQ=0.9875;ERATE=0.0005;THETA=0.0050;AC=1167;AN=2184 GT:DS:GL:BD 0.53434068 1 1 25887550 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25887563 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0334;AVGPOST=0.9998;RSQ=0.9969;ERATE=0.0003;THETA=0.0008;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 25887574 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25887603 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0059;AVGPOST=0.9995;RSQ=0.9650;ERATE=0.0004;THETA=0.0028;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 25887646 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6380;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25887795 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25887887 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0024;AVGPOST=0.9986;RSQ=0.7517;ERATE=0.0004;THETA=0.0027;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25888000 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0573;AVGPOST=0.9983;RSQ=0.9884;ERATE=0.0004;THETA=0.0005;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 25888107 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.861;LDAF=0.0072;AVGPOST=0.9979;RSQ=0.8741;ERATE=0.0005;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 25888240 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.975;LDAF=0.0231;AVGPOST=0.9974;RSQ=0.9575;ERATE=0.0005;THETA=0.0007;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 25888347 . AAC A 641 PASS INDEL;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0060;AVGPOST=0.9962;RSQ=0.7707;ERATE=0.0008;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 25888517 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25888600 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.835;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.8005;ERATE=0.0011;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25888633 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0219;AVGPOST=0.9991;RSQ=0.9835;ERATE=0.0004;THETA=0.0014;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 25888654 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25888779 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8840;ERATE=0.0005;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25888863 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0157;AVGPOST=0.9998;RSQ=0.9930;ERATE=0.0003;THETA=0.0008;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 25888904 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0362;AVGPOST=0.9996;RSQ=0.9948;ERATE=0.0004;THETA=0.0007;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 25888992 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.939;LDAF=0.0044;AVGPOST=0.9986;RSQ=0.9014;ERATE=0.0003;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25889072 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25889110 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6817;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25889342 rs10687390 CAG C 40569 PASS INDEL;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4702;AVGPOST=0.9891;RSQ=0.9819;ERATE=0.0025;THETA=0.0004;AC=1028;AN=2184 GT:DS:GL:BD 0.47069597 0 1 25889395 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0229;AVGPOST=1.0000;RSQ=0.9991;ERATE=0.0003;THETA=0.0004;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 25889422 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4660;AVGPOST=0.9995;RSQ=0.9991;ERATE=0.0005;THETA=0.0008;AC=1018;AN=2184 GT:DS:GL:BD 0.46611720 0 1 25889488 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25889539 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0258;AVGPOST=0.9996;RSQ=0.9935;ERATE=0.0003;THETA=0.0004;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 25889628 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.695;LDAF=0.0056;AVGPOST=0.9952;RSQ=0.6824;ERATE=0.0043;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25889632 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.984;LDAF=0.4563;AVGPOST=0.9911;RSQ=0.9869;ERATE=0.0071;THETA=0.0005;AC=1000;AN=2184 GT:DS:GL:BD 0.45787546 0 1 25889672 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4465;AVGPOST=0.9997;RSQ=0.9994;ERATE=0.0004;THETA=0.0035;AC=976;AN=2184 GT:DS:GL:BD 0.44688645 0 1 25889760 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25889829 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25889878 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0223;AVGPOST=0.9991;RSQ=0.9826;ERATE=0.0004;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 25889917 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.4835;AVGPOST=0.9947;RSQ=0.9919;ERATE=0.0031;THETA=0.0005;AC=1057;AN=2184 GT:DS:GL:BD 0.48397437 0 1 25889998 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0082;AVGPOST=0.9947;RSQ=0.7588;ERATE=0.0005;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 25890050 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4746;AVGPOST=0.9992;RSQ=0.9988;ERATE=0.0004;THETA=0.0004;AC=1037;AN=2184 GT:DS:GL:BD 0.47481686 0 1 25890138 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25890188 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0056;AVGPOST=0.9992;RSQ=0.9539;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 25890189 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5940;AVGPOST=0.9989;RSQ=0.9983;ERATE=0.0007;THETA=0.0030;AC=1298;AN=2184 GT:DS:GL:BD 0.59432232 1 1 25890207 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9682;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25890246 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9466;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25890247 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0241;AVGPOST=0.9990;RSQ=0.9847;ERATE=0.0003;THETA=0.0005;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 25890248 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9797;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25890295 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9525;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25890373 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.0848;AVGPOST=0.9989;RSQ=0.9955;ERATE=0.0004;THETA=0.0006;AC=186;AN=2184 GT:DS:GL:BD 0.08516484 0 1 25890398 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6398;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25890409 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0030;AVGPOST=0.9991;RSQ=0.8695;ERATE=0.0009;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25890424 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7882;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25890467 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25890538 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6555;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25890637 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.4442;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25890754 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0072;AVGPOST=0.9994;RSQ=0.9725;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 25890835 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5227;AVGPOST=0.9968;RSQ=0.9949;ERATE=0.0011;THETA=0.0004;AC=1143;AN=2184 GT:DS:GL:BD 0.52335167 1 1 25890867 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.419;LDAF=0.0007;AVGPOST=0.9989;RSQ=0.4147;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25890930 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0033;AVGPOST=0.9986;RSQ=0.8407;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25890941 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0075;AVGPOST=0.9995;RSQ=0.9692;ERATE=0.0003;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 25891073 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.693;LDAF=0.0009;AVGPOST=0.9988;RSQ=0.4079;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25891174 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.5196;AVGPOST=0.9959;RSQ=0.9933;ERATE=0.0010;THETA=0.0004;AC=1137;AN=2184 GT:DS:GL:BD 0.52060437 1 1 25891274 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9403;ERATE=0.0003;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25891357 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.696;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25891361 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0069;AVGPOST=0.9984;RSQ=0.9115;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 25891454 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0307;AVGPOST=0.9997;RSQ=0.9953;ERATE=0.0003;THETA=0.0011;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 25891518 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9723;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 25891534 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25891540 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0076;AVGPOST=0.9996;RSQ=0.9832;ERATE=0.0004;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 25891565 rs71741461 CCT C 39 PASS INDEL;BAVGPOST=0.999;BRSQ=0.664;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.5986;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25891641 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25891774 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0307;AVGPOST=0.9999;RSQ=0.9979;ERATE=0.0003;THETA=0.0007;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 25891808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9856;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25891959 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4855;AVGPOST=0.9993;RSQ=0.9988;ERATE=0.0004;THETA=0.0004;AC=1060;AN=2184 GT:DS:GL:BD 0.48534799 0 1 25891971 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5171;AVGPOST=0.9992;RSQ=0.9988;ERATE=0.0004;THETA=0.0006;AC=1129;AN=2184 GT:DS:GL:BD 0.51694137 1 1 25891980 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0042;AVGPOST=0.9997;RSQ=0.9643;ERATE=0.0007;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25892179 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25892209 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4203;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25892289 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0091;AVGPOST=0.9991;RSQ=0.9637;ERATE=0.0004;THETA=0.0010;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 25892298 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5200;AVGPOST=0.9979;RSQ=0.9972;ERATE=0.0004;THETA=0.0004;AC=1134;AN=2184 GT:DS:GL:BD 0.51923078 1 1 25892314 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25892402 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25892407 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8705;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25892525 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.5209;AVGPOST=0.9970;RSQ=0.9953;ERATE=0.0016;THETA=0.0003;AC=1137;AN=2184 GT:DS:GL:BD 0.52060437 1 1 25892724 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25892745 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6407;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25892880 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5484;AVGPOST=0.9955;RSQ=0.9925;ERATE=0.0019;THETA=0.0002;AC=1197;AN=2184 GT:DS:GL:BD 0.54807693 1 1 25893137 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.722;LDAF=0.0027;AVGPOST=0.9973;RSQ=0.5911;ERATE=0.0007;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25893221 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5309;AVGPOST=0.9991;RSQ=0.9984;ERATE=0.0004;THETA=0.0007;AC=1160;AN=2184 GT:DS:GL:BD 0.53113556 1 1 25893242 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.959;LDAF=0.5173;AVGPOST=0.9754;RSQ=0.9682;ERATE=0.0017;THETA=0.0005;AC=1134;AN=2184 GT:DS:GL:BD 0.51923078 1 1 25893243 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.957;LDAF=0.3752;AVGPOST=0.9761;RSQ=0.9662;ERATE=0.0004;THETA=0.0008;AC=824;AN=2184 GT:DS:GL:BD 0.37728938 0 1 25893291 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25893316 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0008;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25893426 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25893463 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25893500 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0013;AVGPOST=0.9996;RSQ=0.8876;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25893503 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25893511 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25893516 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.8026;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25893546 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0038;AVGPOST=0.9988;RSQ=0.8525;ERATE=0.0005;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25893721 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.7936;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25893913 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7648;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25893926 . GA G 1003 PASS INDEL;BAVGPOST=0.818;BRSQ=0.615;LDAF=0.2390;AVGPOST=0.8442;RSQ=0.7064;ERATE=0.0016;THETA=0.0007;AC=493;AN=2184 GT:DS:GL:BD 0.22573259 0 1 25893927 rs67604301 AT A 25391 PASS INDEL;BAVGPOST=0.975;BRSQ=0.955;LDAF=0.4554;AVGPOST=0.9788;RSQ=0.9679;ERATE=0.0017;THETA=0.0005;AC=1002;AN=2184 GT:DS:GL:BD 0.45879120 0 1 25893932 . TC T 482 PASS INDEL;BAVGPOST=0.813;BRSQ=0.604;LDAF=0.2350;AVGPOST=0.8452;RSQ=0.7059;ERATE=0.0012;THETA=0.0017;AC=481;AN=2184 GT:DS:GL:BD 0.22023809 0 1 25893989 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0034;AVGPOST=0.9989;RSQ=0.8895;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25894019 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.699;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6317;ERATE=0.0008;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25894079 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.794;LDAF=0.0093;AVGPOST=0.9948;RSQ=0.7752;ERATE=0.0015;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 25894245 . T TC 663 PASS INDEL;BAVGPOST=0.996;BRSQ=0.954;LDAF=0.0348;AVGPOST=0.9964;RSQ=0.9567;ERATE=0.0006;THETA=0.0004;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 25894248 . C CT 4525 PASS INDEL;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0326;AVGPOST=0.9965;RSQ=0.9532;ERATE=0.0008;THETA=0.0051;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 25894293 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5780;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25894380 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.612;LDAF=0.0023;AVGPOST=0.9997;RSQ=0.9448;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25894467 rs72508770 A ACT 82927 PASS INDEL;BAVGPOST=0.996;BRSQ=0.766;LDAF=0.9882;AVGPOST=0.9894;RSQ=0.6364;ERATE=0.0043;THETA=0.0006;AC=2166;AN=2184 GT:DS:GL:BD 0.99175823 1 1 25894540 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8078;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25894584 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8354;ERATE=0.0003;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25894705 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0221;AVGPOST=0.9985;RSQ=0.9790;ERATE=0.0003;THETA=0.0005;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 25894846 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7295;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25894853 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5362;AVGPOST=0.9984;RSQ=0.9973;ERATE=0.0006;THETA=0.0003;AC=1171;AN=2184 GT:DS:GL:BD 0.53617215 1 1 25895156 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.748;LDAF=0.0056;AVGPOST=0.9959;RSQ=0.7360;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 25895238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5364;AVGPOST=0.9969;RSQ=0.9947;ERATE=0.0007;THETA=0.0003;AC=1172;AN=2184 GT:DS:GL:BD 0.53663003 1 1 25895276 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0185;AVGPOST=0.9976;RSQ=0.9451;ERATE=0.0003;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 25895277 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.857;LDAF=0.0236;AVGPOST=0.9910;RSQ=0.8566;ERATE=0.0005;THETA=0.0003;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 25895355 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25895406 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.5050;AVGPOST=0.9971;RSQ=0.9953;ERATE=0.0007;THETA=0.0004;AC=1103;AN=2184 GT:DS:GL:BD 0.50503665 1 1 25895417 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.647;LDAF=0.0022;AVGPOST=0.9979;RSQ=0.6039;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25895472 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.719;LDAF=0.0032;AVGPOST=0.9976;RSQ=0.6813;ERATE=0.0006;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25895480 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.955;LDAF=0.0319;AVGPOST=0.9953;RSQ=0.9509;ERATE=0.0004;THETA=0.0004;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 25895526 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.5346;AVGPOST=0.9938;RSQ=0.9904;ERATE=0.0008;THETA=0.0007;AC=1170;AN=2184 GT:DS:GL:BD 0.53571427 1 1 25895599 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5564;AVGPOST=0.9968;RSQ=0.9951;ERATE=0.0006;THETA=0.0006;AC=1214;AN=2184 GT:DS:GL:BD 0.55586082 1 1 25895636 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.801;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7225;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25895797 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0215;AVGPOST=0.9999;RSQ=0.9971;ERATE=0.0003;THETA=0.0005;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 25895806 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0210;AVGPOST=0.9993;RSQ=0.9873;ERATE=0.0003;THETA=0.0005;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 25895929 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25896021 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.994;LDAF=0.5586;AVGPOST=0.9961;RSQ=0.9942;ERATE=0.0007;THETA=0.0019;AC=1219;AN=2184 GT:DS:GL:BD 0.55815017 1 1 25896065 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5567;AVGPOST=0.9980;RSQ=0.9970;ERATE=0.0005;THETA=0.0013;AC=1214;AN=2184 GT:DS:GL:BD 0.55586082 1 1 25896099 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7163;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25896158 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0048;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25896210 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.977;LDAF=0.6640;AVGPOST=0.9863;RSQ=0.9786;ERATE=0.0005;THETA=0.0022;AC=1449;AN=2184 GT:DS:GL:BD 0.66346157 1 1 25896378 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.755;LDAF=0.0022;AVGPOST=0.9982;RSQ=0.6361;ERATE=0.0005;THETA=0.0038;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25896424 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0035;AVGPOST=0.9989;RSQ=0.8603;ERATE=0.0003;THETA=0.0037;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25897026 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.991;LDAF=0.5456;AVGPOST=0.9923;RSQ=0.9875;ERATE=0.0011;THETA=0.0007;AC=1191;AN=2184 GT:DS:GL:BD 0.54532969 1 1 25897077 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5005;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25897216 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0043;AVGPOST=0.9943;RSQ=0.5065;ERATE=0.0009;THETA=0.0040;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25897243 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.522;LDAF=0.0223;AVGPOST=0.9785;RSQ=0.5785;ERATE=0.0007;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 25897329 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.680;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5782;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25897523 . TC T 193 PASS INDEL;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.6816;ERATE=0.0007;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25897593 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0021;AVGPOST=0.9988;RSQ=0.7545;ERATE=0.0005;THETA=0.0059;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25897631 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0233;AVGPOST=0.9957;RSQ=0.9306;ERATE=0.0009;THETA=0.0004;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 25897794 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0202;AVGPOST=0.9995;RSQ=0.9893;ERATE=0.0003;THETA=0.0005;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 25897867 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7141;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25898040 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25898061 . AGAT A 54 PASS INDEL;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5177;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25898081 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25898146 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4920;ERATE=0.0006;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25898298 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.605;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8864;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25898465 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25898501 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0210;AVGPOST=0.9995;RSQ=0.9896;ERATE=0.0003;THETA=0.0011;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 25898813 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0031;AVGPOST=0.9981;RSQ=0.7426;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25898900 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.742;LDAF=0.0038;AVGPOST=0.9974;RSQ=0.6959;ERATE=0.0005;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25899088 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0412;AVGPOST=0.9997;RSQ=0.9968;ERATE=0.0003;THETA=0.0006;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 25899165 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.987;LDAF=0.4726;AVGPOST=0.9905;RSQ=0.9849;ERATE=0.0018;THETA=0.0010;AC=1029;AN=2184 GT:DS:GL:BD 0.47115386 0 1 25899174 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6726;ERATE=0.0004;THETA=0.0058;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25899267 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25899269 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0065;AVGPOST=0.9998;RSQ=0.9881;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 25899281 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.8019;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25899379 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5436;ERATE=0.0004;THETA=0.0039;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25899456 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0069;AVGPOST=0.9984;RSQ=0.8979;ERATE=0.0006;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 25899457 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4989;ERATE=0.0006;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25899672 . A AGTTGT 115 PASS INDEL;BAVGPOST=0.999;BRSQ=0.631;LDAF=0.0028;AVGPOST=0.9965;RSQ=0.4777;ERATE=0.0008;THETA=0.0023;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25899728 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0108;AVGPOST=0.9982;RSQ=0.9276;ERATE=0.0006;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 25899776 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25899822 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5996;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25900008 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.966;LDAF=0.0226;AVGPOST=0.9943;RSQ=0.9171;ERATE=0.0013;THETA=0.0006;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 25900135 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0040;AVGPOST=0.9974;RSQ=0.7502;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25900176 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25900176 . C CGAG 121 PASS INDEL;BAVGPOST=1.000;BRSQ=0.707;LDAF=0.0020;AVGPOST=0.9972;RSQ=0.4557;ERATE=0.0004;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25900196 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0040;AVGPOST=0.9979;RSQ=0.7868;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25900215 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.975;LDAF=0.4335;AVGPOST=0.9780;RSQ=0.9673;ERATE=0.0040;THETA=0.0005;AC=943;AN=2184 GT:DS:GL:BD 0.43177655 0 1 25900240 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.943;LDAF=0.1658;AVGPOST=0.9791;RSQ=0.9423;ERATE=0.0008;THETA=0.0006;AC=356;AN=2184 GT:DS:GL:BD 0.16300367 0 1 25900344 MERGED_DEL_2_2445 AGTGCCCACCACATGCCAGGATGCATGCCAGGCGTCTGGAACATGGCAGCAAACAAAACAGCAGAAATCCCCATCCTCATGGAGCTGACGCTCCCCCAAATATGTATAAATATTTGTAAATACGTAAAAATAGGTGTGGTGTAAGCACTCCAAAGGAAAAAGGGCGGTGGGGGGAAGGGGAGTGGCCTGG A . . SV;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7317;ERATE=0.0004;THETA=0.0013;CIEND=-17,33;CIPOS=-18,19;END=25908041;HOMLEN=1;HOMSEQ=G;SOURCE=GenomeStrip_25900312_25908011;SVL GT:DS:GL:BD 0.00137363 0 1 25900432 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.751;LDAF=0.0005;AVGPOST=0.9994;RSQ=0.4911;ERATE=0.0004;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25900433 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0024;AVGPOST=0.9964;RSQ=0.4962;ERATE=0.0003;THETA=0.0021;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25900459 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.648;LDAF=0.0472;AVGPOST=0.9632;RSQ=0.6751;ERATE=0.0163;THETA=0.0005;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 25900714 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.573;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7782;ERATE=0.0004;THETA=0.0078;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25900854 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6967;ERATE=0.0003;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25900868 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0093;AVGPOST=0.9996;RSQ=0.9861;ERATE=0.0003;THETA=0.0030;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 25900926 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0049;AVGPOST=0.9983;RSQ=0.8419;ERATE=0.0006;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25900952 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25900974 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25901012 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0043;AVGPOST=0.9989;RSQ=0.8935;ERATE=0.0005;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25901132 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0099;AVGPOST=0.9988;RSQ=0.9523;ERATE=0.0003;THETA=0.0013;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 25901324 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0068;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25901325 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25901347 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7419;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25901390 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25901526 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5719;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25901560 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0093;AVGPOST=0.9989;RSQ=0.9591;ERATE=0.0004;THETA=0.0010;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 25901866 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0023;AVGPOST=0.9985;RSQ=0.7518;ERATE=0.0007;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25901910 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0021;AVGPOST=0.9980;RSQ=0.5988;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25902061 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25902264 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.991;LDAF=0.6361;AVGPOST=0.9940;RSQ=0.9905;ERATE=0.0008;THETA=0.0003;AC=1390;AN=2184 GT:DS:GL:BD 0.63644689 1 1 25902425 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7313;ERATE=0.0006;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25902538 . G GGT 41 PASS INDEL;BAVGPOST=1.000;BRSQ=0.654;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.3036;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25902557 rs112344574 TA T 356 PASS INDEL;BAVGPOST=0.894;BRSQ=0.332;LDAF=0.1287;AVGPOST=0.8278;RSQ=0.3543;ERATE=0.0316;THETA=0.0003;AC=131;AN=2184 GT:DS:GL:BD 0.05998169 0 1 25902580 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.922;BRSQ=0.860;LDAF=0.5437;AVGPOST=0.9103;RSQ=0.8694;ERATE=0.0132;THETA=0.0009;AC=1227;AN=2184 GT:DS:GL:BD 0.56181318 1 1 25902912 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.800;LDAF=0.0025;AVGPOST=0.9989;RSQ=0.8096;ERATE=0.0003;THETA=0.0026;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25902979 . TG T 6 PASS INDEL;BAVGPOST=0.999;BRSQ=0.773;LDAF=0.0019;AVGPOST=0.9977;RSQ=0.4897;ERATE=0.0009;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25902982 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.726;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6707;ERATE=0.0007;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25903181 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0038;AVGPOST=0.9978;RSQ=0.7658;ERATE=0.0004;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25903367 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.560;LDAF=0.0106;AVGPOST=0.9875;RSQ=0.5202;ERATE=0.0030;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 25903368 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.968;LDAF=0.5480;AVGPOST=0.9872;RSQ=0.9825;ERATE=0.0007;THETA=0.0005;AC=1198;AN=2184 GT:DS:GL:BD 0.54853481 1 1 25903447 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.982;LDAF=0.6339;AVGPOST=0.9932;RSQ=0.9892;ERATE=0.0005;THETA=0.0014;AC=1387;AN=2184 GT:DS:GL:BD 0.63507324 1 1 25903455 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.753;LDAF=0.0102;AVGPOST=0.9933;RSQ=0.7417;ERATE=0.0009;THETA=0.0021;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 25903525 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0215;AVGPOST=0.9983;RSQ=0.9702;ERATE=0.0004;THETA=0.0008;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 25903705 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25903719 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25904030 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25904075 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.8031;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25904083 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9687;ERATE=0.0004;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25904229 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.899;LDAF=0.0423;AVGPOST=0.9891;RSQ=0.9047;ERATE=0.0004;THETA=0.0019;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 25904230 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6429;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25904283 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0116;AVGPOST=0.9980;RSQ=0.9351;ERATE=0.0004;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 25904301 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0228;AVGPOST=0.9991;RSQ=0.9831;ERATE=0.0003;THETA=0.0005;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 25904317 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.5007;ERATE=0.0007;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25904371 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25904391 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0227;AVGPOST=0.9994;RSQ=0.9885;ERATE=0.0003;THETA=0.0011;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 25904403 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25904687 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.713;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7933;ERATE=0.0011;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25904775 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25904782 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.987;LDAF=0.6321;AVGPOST=0.9937;RSQ=0.9905;ERATE=0.0003;THETA=0.0015;AC=1380;AN=2184 GT:DS:GL:BD 0.63186812 1 1 25904788 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.987;LDAF=0.6322;AVGPOST=0.9935;RSQ=0.9900;ERATE=0.0004;THETA=0.0009;AC=1380;AN=2184 GT:DS:GL:BD 0.63186812 1 1 25904854 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.789;LDAF=0.0075;AVGPOST=0.9960;RSQ=0.8244;ERATE=0.0004;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 25904872 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25904921 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6360;ERATE=0.0005;THETA=0.0064;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25904960 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.895;LDAF=0.0046;AVGPOST=0.9985;RSQ=0.8773;ERATE=0.0003;THETA=0.0035;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25905033 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0029;AVGPOST=0.9986;RSQ=0.8000;ERATE=0.0007;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25905355 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.661;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25905433 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.878;LDAF=0.0086;AVGPOST=0.9979;RSQ=0.8852;ERATE=0.0007;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 25905452 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25905455 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7921;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25905482 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.876;LDAF=0.0070;AVGPOST=0.9987;RSQ=0.9173;ERATE=0.0004;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 25905569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25905590 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25905634 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25905644 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0261;AVGPOST=0.9984;RSQ=0.9785;ERATE=0.0005;THETA=0.0007;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 25905678 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25905773 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6466;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25906031 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8498;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25906305 rs67264239 AT A 67938 PASS INDEL;BAVGPOST=0.987;BRSQ=0.979;LDAF=0.6140;AVGPOST=0.9896;RSQ=0.9845;ERATE=0.0005;THETA=0.0004;AC=1342;AN=2184 GT:DS:GL:BD 0.61446887 1 1 25906307 . TA T 15379 PASS INDEL;BAVGPOST=0.973;BRSQ=0.957;LDAF=0.6091;AVGPOST=0.9807;RSQ=0.9717;ERATE=0.0015;THETA=0.0024;AC=1336;AN=2184 GT:DS:GL:BD 0.61172163 1 1 25906337 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7332;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25906397 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8879;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25906416 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6262;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25906464 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25906552 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.867;LDAF=0.0077;AVGPOST=0.9976;RSQ=0.8726;ERATE=0.0005;THETA=0.0015;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 25906624 . C CT 1298 PASS INDEL;BAVGPOST=0.998;BRSQ=0.890;LDAF=0.0077;AVGPOST=0.9968;RSQ=0.8554;ERATE=0.0005;THETA=0.0035;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 25906788 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.964;LDAF=0.0238;AVGPOST=0.9977;RSQ=0.9604;ERATE=0.0006;THETA=0.0008;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 25906802 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.982;LDAF=0.5963;AVGPOST=0.9898;RSQ=0.9845;ERATE=0.0017;THETA=0.0037;AC=1306;AN=2184 GT:DS:GL:BD 0.59798533 1 1 25906876 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.951;LDAF=0.5552;AVGPOST=0.9572;RSQ=0.9424;ERATE=0.0112;THETA=0.0021;AC=1228;AN=2184 GT:DS:GL:BD 0.56227106 1 1 25906877 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25907004 . AATT A 540 PASS INDEL;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0085;AVGPOST=0.9981;RSQ=0.9341;ERATE=0.0003;THETA=0.0015;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 25907052 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.944;LDAF=0.0407;AVGPOST=0.9928;RSQ=0.9339;ERATE=0.0004;THETA=0.0008;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 25907080 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7986;ERATE=0.0004;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25907087 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.981;LDAF=0.5863;AVGPOST=0.9883;RSQ=0.9825;ERATE=0.0010;THETA=0.0054;AC=1283;AN=2184 GT:DS:GL:BD 0.58745420 1 1 25907167 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0259;AVGPOST=0.9976;RSQ=0.9639;ERATE=0.0004;THETA=0.0006;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 25907445 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0077;AVGPOST=0.9984;RSQ=0.9054;ERATE=0.0006;THETA=0.0011;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 25907638 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25907668 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0023;AVGPOST=0.9988;RSQ=0.7720;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25907721 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8625;ERATE=0.0003;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25907722 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6140;ERATE=0.0004;THETA=0.0050;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25907984 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7421;ERATE=0.0003;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25908040 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0037;AVGPOST=0.9990;RSQ=0.8983;ERATE=0.0005;THETA=0.0046;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25908046 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0114;AVGPOST=0.9993;RSQ=0.9787;ERATE=0.0004;THETA=0.0009;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 25908111 . AG A 76 PASS INDEL;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5240;ERATE=0.0004;THETA=0.0056;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25908113 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.675;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.7206;ERATE=0.0003;THETA=0.0066;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25908133 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.9033;ERATE=0.0004;THETA=0.0042;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25908195 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.979;LDAF=0.3283;AVGPOST=0.9893;RSQ=0.9815;ERATE=0.0003;THETA=0.0008;AC=717;AN=2184 GT:DS:GL:BD 0.32829669 0 1 25908241 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.976;LDAF=0.3484;AVGPOST=0.9859;RSQ=0.9763;ERATE=0.0008;THETA=0.0038;AC=760;AN=2184 GT:DS:GL:BD 0.34798536 0 1 25908331 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5869;ERATE=0.0004;THETA=0.0126;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25908445 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.727;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5303;ERATE=0.0005;THETA=0.0258;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25908483 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.933;BRSQ=0.888;LDAF=0.3549;AVGPOST=0.9340;RSQ=0.9002;ERATE=0.0035;THETA=0.0322;AC=763;AN=2184 GT:DS:GL:BD 0.34935898 0 1 25908805 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.859;BRSQ=0.783;LDAF=0.5073;AVGPOST=0.8687;RSQ=0.8195;ERATE=0.0279;THETA=0.0152;AC=1109;AN=2184 GT:DS:GL:BD 0.50778389 1 1 25908816 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.738;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5392;ERATE=0.0005;THETA=0.0142;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25908849 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.587;LDAF=0.0022;AVGPOST=0.9966;RSQ=0.3358;ERATE=0.0012;THETA=0.0199;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25908871 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.557;LDAF=0.0035;AVGPOST=0.9963;RSQ=0.5575;ERATE=0.0007;THETA=0.0076;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25908873 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.752;LDAF=0.0264;AVGPOST=0.9846;RSQ=0.7777;ERATE=0.0016;THETA=0.0200;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 25908874 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.896;BRSQ=0.757;LDAF=0.8019;AVGPOST=0.8931;RSQ=0.7895;ERATE=0.0243;THETA=0.0131;AC=1794;AN=2184 GT:DS:GL:BD 0.82142860 1 1 25908881 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.679;LDAF=0.0082;AVGPOST=0.9927;RSQ=0.6237;ERATE=0.0027;THETA=0.0049;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 25908888 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.768;LDAF=0.0105;AVGPOST=0.9931;RSQ=0.7333;ERATE=0.0012;THETA=0.0114;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 25908893 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.701;LDAF=0.0121;AVGPOST=0.9927;RSQ=0.7654;ERATE=0.0009;THETA=0.0017;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 25908946 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.602;LDAF=0.0072;AVGPOST=0.9895;RSQ=0.3480;ERATE=0.0030;THETA=0.0120;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25909054 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.485;LDAF=0.0051;AVGPOST=0.9923;RSQ=0.3895;ERATE=0.0013;THETA=0.0037;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25909274 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6197;ERATE=0.0004;THETA=0.0094;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25909284 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8574;ERATE=0.0004;THETA=0.0022;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25909310 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5303;ERATE=0.0005;THETA=0.0096;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25909361 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.914;LDAF=0.0264;AVGPOST=0.9941;RSQ=0.9062;ERATE=0.0009;THETA=0.0162;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 25909399 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25909407 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5407;ERATE=0.0006;THETA=0.0065;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25909420 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.637;LDAF=0.0036;AVGPOST=0.9958;RSQ=0.5235;ERATE=0.0009;THETA=0.0098;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25909493 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0026;AVGPOST=0.9992;RSQ=0.8256;ERATE=0.0005;THETA=0.0104;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25909538 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.705;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5540;ERATE=0.0004;THETA=0.0120;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25909560 . C CA 491 PASS INDEL;BAVGPOST=0.941;BRSQ=0.538;LDAF=0.0887;AVGPOST=0.9078;RSQ=0.5020;ERATE=0.0224;THETA=0.0094;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 25909571 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.558;LDAF=0.0025;AVGPOST=0.9971;RSQ=0.5229;ERATE=0.0007;THETA=0.0082;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25909598 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0071;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25909805 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.659;LDAF=0.0091;AVGPOST=0.9927;RSQ=0.6494;ERATE=0.0005;THETA=0.0097;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 25910096 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0192;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25910193 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9475;ERATE=0.0003;THETA=0.0144;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25910234 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0457;AVGPOST=0.9994;RSQ=0.9947;ERATE=0.0004;THETA=0.0070;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 25910295 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7566;ERATE=0.0003;THETA=0.0133;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25910325 . GTC G 326 PASS INDEL;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6736;ERATE=0.0005;THETA=0.0079;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25910397 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8497;ERATE=0.0004;THETA=0.0065;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25910406 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0004;THETA=0.0077;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25910413 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25910431 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9469;ERATE=0.0003;THETA=0.0027;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25910442 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0457;AVGPOST=0.9995;RSQ=0.9957;ERATE=0.0003;THETA=0.0061;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 25910459 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.978;LDAF=0.0450;AVGPOST=0.9988;RSQ=0.9897;ERATE=0.0005;THETA=0.0084;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 25910533 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.975;LDAF=0.1302;AVGPOST=0.9753;RSQ=0.9278;ERATE=0.0012;THETA=0.0051;AC=282;AN=2184 GT:DS:GL:BD 0.12912089 0 1 25910624 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.982;LDAF=0.1762;AVGPOST=0.9796;RSQ=0.9547;ERATE=0.0005;THETA=0.0026;AC=386;AN=2184 GT:DS:GL:BD 0.17673993 0 1 25910662 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0454;AVGPOST=0.9996;RSQ=0.9961;ERATE=0.0003;THETA=0.0007;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 25910717 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.392;LDAF=0.0021;AVGPOST=0.9968;RSQ=0.3120;ERATE=0.0009;THETA=0.0048;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25910811 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7475;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25910842 . G GT 711 PASS INDEL;BAVGPOST=0.970;BRSQ=0.593;LDAF=0.0526;AVGPOST=0.9468;RSQ=0.5505;ERATE=0.0174;THETA=0.0012;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 25910951 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8142;ERATE=0.0003;THETA=0.0048;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25910967 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0026;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25910968 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0004;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25910974 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0464;AVGPOST=0.9995;RSQ=0.9957;ERATE=0.0003;THETA=0.0018;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 25911242 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7202;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25911257 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.785;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7853;ERATE=0.0004;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25911292 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6495;ERATE=0.0004;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25911339 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6172;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25911602 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0433;AVGPOST=0.9991;RSQ=0.9934;ERATE=0.0003;THETA=0.0016;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 25911604 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0434;AVGPOST=0.9989;RSQ=0.9906;ERATE=0.0004;THETA=0.0016;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 25911640 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8316;ERATE=0.0003;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25911687 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6913;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25911693 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.8198;ERATE=0.0003;THETA=0.0056;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25911724 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7640;ERATE=0.0003;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25911753 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25911760 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0188;AVGPOST=0.9994;RSQ=0.9870;ERATE=0.0003;THETA=0.0020;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 25911798 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0448;AVGPOST=0.9995;RSQ=0.9957;ERATE=0.0003;THETA=0.0031;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 25911800 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0448;AVGPOST=0.9995;RSQ=0.9954;ERATE=0.0003;THETA=0.0007;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 25911860 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.917;BRSQ=0.829;LDAF=0.2631;AVGPOST=0.8894;RSQ=0.7859;ERATE=0.0053;THETA=0.0071;AC=539;AN=2184 GT:DS:GL:BD 0.24679486 0 1 25911965 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.508;LDAF=0.0132;AVGPOST=0.9855;RSQ=0.5359;ERATE=0.0019;THETA=0.0032;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 25911973 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.805;LDAF=0.0095;AVGPOST=0.9958;RSQ=0.8360;ERATE=0.0005;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 25912038 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.829;LDAF=0.0458;AVGPOST=0.9903;RSQ=0.9253;ERATE=0.0006;THETA=0.0009;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 25912096 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.881;LDAF=0.0098;AVGPOST=0.9964;RSQ=0.8463;ERATE=0.0006;THETA=0.0009;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 25912112 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.944;LDAF=0.0445;AVGPOST=0.9955;RSQ=0.9656;ERATE=0.0005;THETA=0.0033;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 25912113 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.944;LDAF=0.0461;AVGPOST=0.9973;RSQ=0.9802;ERATE=0.0004;THETA=0.0011;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 25912148 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.791;LDAF=0.0058;AVGPOST=0.9967;RSQ=0.7595;ERATE=0.0006;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25912182 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0029;AVGPOST=0.9987;RSQ=0.8343;ERATE=0.0004;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25912200 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.790;LDAF=0.0087;AVGPOST=0.9941;RSQ=0.7269;ERATE=0.0004;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 25912225 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.748;LDAF=0.0024;AVGPOST=0.9966;RSQ=0.4020;ERATE=0.0005;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25912249 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.885;LDAF=0.0122;AVGPOST=0.9957;RSQ=0.8562;ERATE=0.0008;THETA=0.0021;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 25912317 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.954;LDAF=0.0214;AVGPOST=0.9975;RSQ=0.9596;ERATE=0.0005;THETA=0.0004;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 25912408 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1903;AVGPOST=0.9984;RSQ=0.9961;ERATE=0.0006;THETA=0.0024;AC=416;AN=2184 GT:DS:GL:BD 0.19047619 0 1 25912660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9555;ERATE=0.0003;THETA=0.0018;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25912681 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25912739 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9135;ERATE=0.0003;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25912741 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1699;AVGPOST=0.9988;RSQ=0.9967;ERATE=0.0004;THETA=0.0016;AC=371;AN=2184 GT:DS:GL:BD 0.16987179 0 1 25912802 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1706;AVGPOST=0.9983;RSQ=0.9955;ERATE=0.0006;THETA=0.0011;AC=372;AN=2184 GT:DS:GL:BD 0.17032968 0 1 25912823 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.760;LDAF=0.0029;AVGPOST=0.9978;RSQ=0.6674;ERATE=0.0005;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25912913 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.614;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5235;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25913018 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.988;LDAF=0.1898;AVGPOST=0.9961;RSQ=0.9920;ERATE=0.0006;THETA=0.0024;AC=416;AN=2184 GT:DS:GL:BD 0.19047619 0 1 25913026 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.603;LDAF=0.0100;AVGPOST=0.9900;RSQ=0.6189;ERATE=0.0040;THETA=0.0013;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 25913065 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25913074 . CGCGT C 8610 PASS INDEL;BAVGPOST=0.976;BRSQ=0.914;LDAF=0.1454;AVGPOST=0.9723;RSQ=0.9223;ERATE=0.0043;THETA=0.0014;AC=320;AN=2184 GT:DS:GL:BD 0.14652015 0 1 25913087 . GTGTA G 6872 PASS INDEL;BAVGPOST=0.976;BRSQ=0.915;LDAF=0.1394;AVGPOST=0.9781;RSQ=0.9375;ERATE=0.0018;THETA=0.0008;AC=307;AN=2184 GT:DS:GL:BD 0.14056776 0 1 25913316 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25913345 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8497;ERATE=0.0003;THETA=0.0045;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25913595 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8625;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25913682 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8483;ERATE=0.0004;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25913785 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.988;LDAF=0.1559;AVGPOST=0.9933;RSQ=0.9831;ERATE=0.0011;THETA=0.0006;AC=340;AN=2184 GT:DS:GL:BD 0.15567766 0 1 25913978 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.824;LDAF=0.0031;AVGPOST=0.9992;RSQ=0.8964;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25914072 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25914101 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1657;AVGPOST=0.9986;RSQ=0.9964;ERATE=0.0005;THETA=0.0004;AC=362;AN=2184 GT:DS:GL:BD 0.16575092 0 1 25914133 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1643;AVGPOST=0.9983;RSQ=0.9956;ERATE=0.0006;THETA=0.0014;AC=359;AN=2184 GT:DS:GL:BD 0.16437729 0 1 25914219 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1672;AVGPOST=0.9989;RSQ=0.9974;ERATE=0.0003;THETA=0.0031;AC=366;AN=2184 GT:DS:GL:BD 0.16758242 0 1 25914248 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.660;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7084;ERATE=0.0005;THETA=0.0054;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25914381 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.938;LDAF=0.1616;AVGPOST=0.9886;RSQ=0.9720;ERATE=0.0010;THETA=0.0015;AC=356;AN=2184 GT:DS:GL:BD 0.16300367 0 1 25914440 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.941;LDAF=0.1593;AVGPOST=0.9912;RSQ=0.9763;ERATE=0.0011;THETA=0.0038;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 25914470 rs57386335 AC A 12033 PASS INDEL;BAVGPOST=0.982;BRSQ=0.943;LDAF=0.1590;AVGPOST=0.9928;RSQ=0.9816;ERATE=0.0004;THETA=0.0008;AC=350;AN=2184 GT:DS:GL:BD 0.16025642 0 1 25914570 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.892;LDAF=0.1585;AVGPOST=0.9583;RSQ=0.8958;ERATE=0.0096;THETA=0.0004;AC=335;AN=2184 GT:DS:GL:BD 0.15338828 0 1 25914571 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.920;LDAF=0.1384;AVGPOST=0.9791;RSQ=0.9451;ERATE=0.0005;THETA=0.0006;AC=303;AN=2184 GT:DS:GL:BD 0.13873626 0 1 25914637 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.957;LDAF=0.1620;AVGPOST=0.9910;RSQ=0.9765;ERATE=0.0006;THETA=0.0005;AC=357;AN=2184 GT:DS:GL:BD 0.16346154 0 1 25914670 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0185;AVGPOST=0.9987;RSQ=0.9715;ERATE=0.0005;THETA=0.0006;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 25914799 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.863;LDAF=0.0040;AVGPOST=0.9982;RSQ=0.8073;ERATE=0.0004;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25914801 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.946;LDAF=0.1596;AVGPOST=0.9771;RSQ=0.9398;ERATE=0.0046;THETA=0.0017;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 25914802 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.707;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.6596;ERATE=0.0005;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25914840 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6107;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25915015 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0009;AVGPOST=0.9988;RSQ=0.4891;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25915187 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.404;LDAF=0.0035;AVGPOST=0.9967;RSQ=0.5793;ERATE=0.0006;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25915280 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0038;AVGPOST=0.9967;RSQ=0.6643;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25915309 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0053;AVGPOST=0.9974;RSQ=0.7944;ERATE=0.0008;THETA=0.0015;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25915325 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7290;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25915374 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0023;AVGPOST=0.9987;RSQ=0.7688;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25915382 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8724;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25915420 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0136;AVGPOST=0.9994;RSQ=0.9821;ERATE=0.0004;THETA=0.0011;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 25915421 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.954;LDAF=0.0098;AVGPOST=0.9985;RSQ=0.9357;ERATE=0.0003;THETA=0.0011;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 25915437 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25915530 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1639;AVGPOST=0.9922;RSQ=0.9818;ERATE=0.0005;THETA=0.0061;AC=362;AN=2184 GT:DS:GL:BD 0.16575092 0 1 25915560 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.704;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4969;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25915664 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.880;LDAF=0.0283;AVGPOST=0.9936;RSQ=0.9255;ERATE=0.0005;THETA=0.0012;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 25915672 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5491;ERATE=0.0005;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25915738 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0141;AVGPOST=0.9986;RSQ=0.9556;ERATE=0.0005;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 25915784 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6976;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25915821 . AATAT A 30 PASS INDEL;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0041;AVGPOST=0.9987;RSQ=0.8703;ERATE=0.0003;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25915982 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9375;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25916154 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.654;LDAF=0.0016;AVGPOST=0.9982;RSQ=0.5544;ERATE=0.0007;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25916311 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.850;LDAF=0.0474;AVGPOST=0.9853;RSQ=0.8731;ERATE=0.0012;THETA=0.0011;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 25916320 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0032;AVGPOST=0.9979;RSQ=0.7718;ERATE=0.0004;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25916359 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.628;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5000;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25916404 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.441;LDAF=0.0019;AVGPOST=0.9974;RSQ=0.4276;ERATE=0.0005;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25916430 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.553;LDAF=0.0018;AVGPOST=0.9975;RSQ=0.3725;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25916449 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.613;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.3872;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25916556 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.735;LDAF=0.0042;AVGPOST=0.9958;RSQ=0.6487;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25916599 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.713;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5736;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25916676 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0027;AVGPOST=0.9990;RSQ=0.8605;ERATE=0.0005;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25916806 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0025;AVGPOST=0.9994;RSQ=0.8880;ERATE=0.0004;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25916906 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1652;AVGPOST=0.9986;RSQ=0.9963;ERATE=0.0004;THETA=0.0011;AC=361;AN=2184 GT:DS:GL:BD 0.16529304 0 1 25917063 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0020;AVGPOST=0.9992;RSQ=0.8562;ERATE=0.0004;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25917091 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.736;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.5617;ERATE=0.0005;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25917231 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7665;ERATE=0.0004;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25917242 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1619;AVGPOST=0.9977;RSQ=0.9941;ERATE=0.0004;THETA=0.0008;AC=354;AN=2184 GT:DS:GL:BD 0.16208792 0 1 25917307 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0058;AVGPOST=0.9987;RSQ=0.9111;ERATE=0.0005;THETA=0.0012;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 25917347 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.621;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.7048;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25917355 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0045;AVGPOST=0.9984;RSQ=0.8606;ERATE=0.0004;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25917414 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.660;LDAF=0.0028;AVGPOST=0.9961;RSQ=0.4469;ERATE=0.0007;THETA=0.0033;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25917488 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0029;AVGPOST=0.9973;RSQ=0.6032;ERATE=0.0007;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25917504 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5719;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25917530 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6082;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25917770 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0039;AVGPOST=0.9966;RSQ=0.6426;ERATE=0.0007;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25917825 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.959;LDAF=0.1629;AVGPOST=0.9878;RSQ=0.9697;ERATE=0.0008;THETA=0.0007;AC=358;AN=2184 GT:DS:GL:BD 0.16391942 0 1 25917831 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.958;LDAF=0.1581;AVGPOST=0.9883;RSQ=0.9697;ERATE=0.0005;THETA=0.0007;AC=348;AN=2184 GT:DS:GL:BD 0.15934066 0 1 25917881 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0033;AVGPOST=0.9980;RSQ=0.7638;ERATE=0.0005;THETA=0.0039;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25918119 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0051;AVGPOST=0.9982;RSQ=0.8725;ERATE=0.0005;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 25918122 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0020;AVGPOST=0.9994;RSQ=0.8598;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25918226 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0060;AVGPOST=0.9988;RSQ=0.9286;ERATE=0.0006;THETA=0.0016;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 25918452 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.755;LDAF=0.9766;AVGPOST=0.9870;RSQ=0.7844;ERATE=0.0012;THETA=0.0020;AC=2143;AN=2184 GT:DS:GL:BD 0.98122710 1 1 25918456 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.731;LDAF=0.0096;AVGPOST=0.9924;RSQ=0.7002;ERATE=0.0006;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 25918631 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7636;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25918648 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0064;AVGPOST=0.9989;RSQ=0.9292;ERATE=0.0008;THETA=0.0025;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 25918971 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.980;LDAF=0.2328;AVGPOST=0.9709;RSQ=0.9516;ERATE=0.0018;THETA=0.0014;AC=508;AN=2184 GT:DS:GL:BD 0.23260073 0 1 25919069 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.518;LDAF=0.0046;AVGPOST=0.9918;RSQ=0.2541;ERATE=0.0006;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25919106 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0442;AVGPOST=0.9967;RSQ=0.9704;ERATE=0.0006;THETA=0.0065;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 25919427 . T TG 5019 PASS INDEL;BAVGPOST=0.982;BRSQ=0.936;LDAF=0.1273;AVGPOST=0.9814;RSQ=0.9456;ERATE=0.0009;THETA=0.0007;AC=276;AN=2184 GT:DS:GL:BD 0.12637363 0 1 25919429 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.940;LDAF=0.1334;AVGPOST=0.9830;RSQ=0.9539;ERATE=0.0005;THETA=0.0034;AC=290;AN=2184 GT:DS:GL:BD 0.13278389 0 1 25919430 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.937;LDAF=0.1267;AVGPOST=0.9830;RSQ=0.9513;ERATE=0.0005;THETA=0.0015;AC=275;AN=2184 GT:DS:GL:BD 0.12591575 0 1 25919441 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0059;AVGPOST=0.9987;RSQ=0.9193;ERATE=0.0006;THETA=0.0071;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 25919501 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0021;AVGPOST=0.9988;RSQ=0.7589;ERATE=0.0003;THETA=0.0082;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25919621 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0062;AVGPOST=0.9984;RSQ=0.9046;ERATE=0.0005;THETA=0.0043;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 25919719 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.754;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7258;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25919741 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.628;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.5485;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25919792 rs111453126 C CA 9832 PASS INDEL;BAVGPOST=0.989;BRSQ=0.965;LDAF=0.1419;AVGPOST=0.9923;RSQ=0.9780;ERATE=0.0005;THETA=0.0010;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 25919896 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0057;AVGPOST=0.9994;RSQ=0.9665;ERATE=0.0003;THETA=0.0016;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 25919919 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5525;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25920015 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6237;ERATE=0.0004;THETA=0.0057;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25920131 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.6565;ERATE=0.0005;THETA=0.0018;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25920210 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.853;LDAF=0.0023;AVGPOST=0.9992;RSQ=0.8611;ERATE=0.0005;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25920291 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0031;AVGPOST=0.9991;RSQ=0.8862;ERATE=0.0004;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25920329 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.932;LDAF=0.0028;AVGPOST=0.9988;RSQ=0.8401;ERATE=0.0004;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25920715 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.8133;ERATE=0.0003;THETA=0.0045;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25920733 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.745;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5787;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25921030 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.977;LDAF=0.1455;AVGPOST=0.9948;RSQ=0.9857;ERATE=0.0005;THETA=0.0009;AC=321;AN=2184 GT:DS:GL:BD 0.14697802 0 1 25921044 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0032;AVGPOST=0.9986;RSQ=0.7962;ERATE=0.0008;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25921154 rs59348565 A AG 20724 PASS INDEL;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.1495;AVGPOST=0.9910;RSQ=0.9758;ERATE=0.0020;THETA=0.0010;AC=326;AN=2184 GT:DS:GL:BD 0.14926741 0 1 25921301 . CTGTT C 372 PASS INDEL;BAVGPOST=0.999;BRSQ=0.790;LDAF=0.0033;AVGPOST=0.9969;RSQ=0.5801;ERATE=0.0010;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25921347 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25921355 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0024;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25921485 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0017;AVGPOST=0.9998;RSQ=0.9577;ERATE=0.0003;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25921793 . CGTCT C 111 PASS INDEL;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7063;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25921794 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.4851;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25921821 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.982;LDAF=0.2421;AVGPOST=0.9878;RSQ=0.9754;ERATE=0.0007;THETA=0.0009;AC=525;AN=2184 GT:DS:GL:BD 0.24038461 0 1 25922141 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.8172;ERATE=0.0004;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25922228 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.830;LDAF=0.0026;AVGPOST=0.9991;RSQ=0.8561;ERATE=0.0007;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25922274 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0059;AVGPOST=0.9999;RSQ=0.9906;ERATE=0.0003;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 25922352 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25922435 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0206;AVGPOST=0.9990;RSQ=0.9810;ERATE=0.0005;THETA=0.0018;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 25922449 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1492;AVGPOST=0.9970;RSQ=0.9922;ERATE=0.0006;THETA=0.0009;AC=327;AN=2184 GT:DS:GL:BD 0.14972527 0 1 25922468 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0054;AVGPOST=0.9995;RSQ=0.9677;ERATE=0.0005;THETA=0.0012;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 25922629 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6043;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25922738 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6043;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25922746 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0446;AVGPOST=0.9988;RSQ=0.9892;ERATE=0.0004;THETA=0.0005;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 25922773 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.782;LDAF=0.0026;AVGPOST=0.9975;RSQ=0.6482;ERATE=0.0010;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25922851 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25923076 . G GA 174 PASS INDEL;BAVGPOST=1.000;BRSQ=0.739;LDAF=0.0019;AVGPOST=0.9973;RSQ=0.4242;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25923139 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0059;AVGPOST=0.9967;RSQ=0.7783;ERATE=0.0007;THETA=0.0016;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 25923153 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7730;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25923331 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.732;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.6297;ERATE=0.0005;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25923371 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4598;ERATE=0.0004;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25923564 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.726;LDAF=0.0023;AVGPOST=0.9964;RSQ=0.3694;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25923597 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.737;LDAF=0.0037;AVGPOST=0.9973;RSQ=0.7237;ERATE=0.0009;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25923634 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.470;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6234;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25923666 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0063;AVGPOST=0.9967;RSQ=0.7919;ERATE=0.0008;THETA=0.0013;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 25923750 . C CA 295 PASS INDEL;BAVGPOST=0.935;BRSQ=0.311;LDAF=0.1215;AVGPOST=0.8152;RSQ=0.2992;ERATE=0.0128;THETA=0.0007;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 25923803 rs59663304 TGTAC T 7315 PASS INDEL;BAVGPOST=0.988;BRSQ=0.960;LDAF=0.1542;AVGPOST=0.9665;RSQ=0.9067;ERATE=0.0025;THETA=0.0013;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 25924046 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8481;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25924238 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0091;AVGPOST=0.9983;RSQ=0.9202;ERATE=0.0005;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 25924322 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25924327 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0036;AVGPOST=0.9990;RSQ=0.8896;ERATE=0.0005;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25924398 . GAGC G 123 PASS INDEL;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7159;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25924542 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0025;AVGPOST=0.9992;RSQ=0.8584;ERATE=0.0004;THETA=0.0020;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25924614 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8498;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25925014 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0030;AVGPOST=0.9977;RSQ=0.7663;ERATE=0.0004;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25925083 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.9075;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25925112 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1423;AVGPOST=0.9983;RSQ=0.9949;ERATE=0.0003;THETA=0.0025;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 25925219 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.8033;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25925231 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0189;AVGPOST=0.9995;RSQ=0.9894;ERATE=0.0003;THETA=0.0007;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 25925521 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25925598 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9861;ERATE=0.0003;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25925671 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25925769 . GATT G 160 PASS INDEL;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4794;ERATE=0.0005;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25925782 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7363;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25925983 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1430;AVGPOST=0.9997;RSQ=0.9991;ERATE=0.0003;THETA=0.0010;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 25926057 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.8216;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25926191 . AAAGG A 187 PASS INDEL;BAVGPOST=0.998;BRSQ=0.709;LDAF=0.0030;AVGPOST=0.9973;RSQ=0.6259;ERATE=0.0009;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25926338 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.834;LDAF=0.0039;AVGPOST=0.9992;RSQ=0.9060;ERATE=0.0004;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25926500 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1431;AVGPOST=0.9991;RSQ=0.9969;ERATE=0.0004;THETA=0.0005;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 25926530 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0068;AVGPOST=0.9985;RSQ=0.9161;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 25926722 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0442;AVGPOST=0.9981;RSQ=0.9870;ERATE=0.0003;THETA=0.0006;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 25926750 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8919;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25926778 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0036;AVGPOST=0.9974;RSQ=0.7340;ERATE=0.0006;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25926849 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.759;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7472;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25926850 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1432;AVGPOST=0.9988;RSQ=0.9959;ERATE=0.0005;THETA=0.0007;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 25926868 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8096;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25926892 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25926937 . ATAAT A 140 PASS INDEL;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6252;ERATE=0.0005;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25926951 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.5584;ERATE=0.0004;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25927044 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.692;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6418;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25927195 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.8028;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25927221 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9201;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25927333 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.434;LDAF=0.0073;AVGPOST=0.9912;RSQ=0.5328;ERATE=0.0015;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25927409 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.0744;AVGPOST=0.9989;RSQ=0.9944;ERATE=0.0003;THETA=0.0007;AC=163;AN=2184 GT:DS:GL:BD 0.07463370 0 1 25927451 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1431;AVGPOST=0.9989;RSQ=0.9963;ERATE=0.0004;THETA=0.0009;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 25927484 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1430;AVGPOST=0.9994;RSQ=0.9978;ERATE=0.0003;THETA=0.0011;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 25927640 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0058;AVGPOST=0.9984;RSQ=0.8898;ERATE=0.0011;THETA=0.0019;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 25927801 . G GC 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.751;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.3833;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25927913 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.565;LDAF=0.0024;AVGPOST=0.9970;RSQ=0.4880;ERATE=0.0006;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25927917 . TTCCG T 2256 PASS INDEL;BAVGPOST=0.855;BRSQ=0.495;LDAF=0.2174;AVGPOST=0.8086;RSQ=0.5074;ERATE=0.0401;THETA=0.0010;AC=339;AN=2184 GT:DS:GL:BD 0.15521978 0 1 25927921 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.954;BRSQ=0.663;LDAF=0.0879;AVGPOST=0.9324;RSQ=0.6599;ERATE=0.0142;THETA=0.0011;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 25927952 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0021;AVGPOST=0.9976;RSQ=0.5503;ERATE=0.0005;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25927969 . TTC T 46 PASS INDEL;BAVGPOST=0.994;BRSQ=0.514;LDAF=0.0136;AVGPOST=0.9849;RSQ=0.5572;ERATE=0.0024;THETA=0.0012;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 25927987 . CTCTT C 8777 PASS INDEL;BAVGPOST=0.963;BRSQ=0.897;LDAF=0.1306;AVGPOST=0.9745;RSQ=0.9260;ERATE=0.0018;THETA=0.0010;AC=289;AN=2184 GT:DS:GL:BD 0.13232601 0 1 25928024 . CCTT C 177 PASS INDEL;BAVGPOST=0.957;BRSQ=0.684;LDAF=0.0613;AVGPOST=0.9599;RSQ=0.7557;ERATE=0.0010;THETA=0.0010;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 25928025 . CTTCT C 6877 PASS INDEL;BAVGPOST=0.963;BRSQ=0.846;LDAF=0.1073;AVGPOST=0.9646;RSQ=0.8841;ERATE=0.0017;THETA=0.0011;AC=228;AN=2184 GT:DS:GL:BD 0.10439561 0 1 25928051 rs59141225 CT C 928 PASS INDEL;BAVGPOST=0.961;BRSQ=0.583;LDAF=0.0592;AVGPOST=0.9503;RSQ=0.6551;ERATE=0.0051;THETA=0.0010;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 25928056 . C CT 1598 PASS INDEL;BAVGPOST=0.957;BRSQ=0.723;LDAF=0.0744;AVGPOST=0.9617;RSQ=0.8059;ERATE=0.0018;THETA=0.0005;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 25928057 . TTTC T 778 PASS INDEL;BAVGPOST=0.962;BRSQ=0.650;LDAF=0.0522;AVGPOST=0.9661;RSQ=0.7539;ERATE=0.0009;THETA=0.0008;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 25928069 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0028;AVGPOST=0.9984;RSQ=0.7413;ERATE=0.0005;THETA=0.0056;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25928098 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.548;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.4025;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25928113 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0048;AVGPOST=0.9987;RSQ=0.9060;ERATE=0.0005;THETA=0.0023;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 25928190 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0072;AVGPOST=0.9974;RSQ=0.8459;ERATE=0.0007;THETA=0.0009;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 25928213 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.524;LDAF=0.0128;AVGPOST=0.9852;RSQ=0.5268;ERATE=0.0025;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 25928256 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.961;LDAF=0.1435;AVGPOST=0.9962;RSQ=0.9882;ERATE=0.0007;THETA=0.0015;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 25928262 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25928298 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.826;LDAF=0.0068;AVGPOST=0.9968;RSQ=0.8265;ERATE=0.0005;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 25928362 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0032;AVGPOST=0.9992;RSQ=0.9077;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25928394 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8920;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25928557 . CA C 226 PASS INDEL;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5951;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25928580 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0028;AVGPOST=0.9991;RSQ=0.8799;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25928633 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1437;AVGPOST=0.9979;RSQ=0.9934;ERATE=0.0006;THETA=0.0015;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 25928756 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1433;AVGPOST=0.9992;RSQ=0.9976;ERATE=0.0004;THETA=0.0041;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 25928850 . CT C 643 PASS INDEL;BAVGPOST=0.954;BRSQ=0.776;LDAF=0.0976;AVGPOST=0.9551;RSQ=0.8380;ERATE=0.0006;THETA=0.0009;AC=219;AN=2184 GT:DS:GL:BD 0.10027473 0 1 25928851 rs11351594 TG T 10639 PASS INDEL;BAVGPOST=0.989;BRSQ=0.961;LDAF=0.1431;AVGPOST=0.9977;RSQ=0.9925;ERATE=0.0005;THETA=0.0014;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 25928855 . GT G 1135 PASS INDEL;BAVGPOST=0.956;BRSQ=0.805;LDAF=0.1072;AVGPOST=0.9608;RSQ=0.8731;ERATE=0.0006;THETA=0.0015;AC=240;AN=2184 GT:DS:GL:BD 0.10989011 0 1 25928935 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1438;AVGPOST=0.9985;RSQ=0.9958;ERATE=0.0006;THETA=0.0007;AC=314;AN=2184 GT:DS:GL:BD 0.14377290 0 1 25928994 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1505;AVGPOST=0.9975;RSQ=0.9929;ERATE=0.0006;THETA=0.0007;AC=328;AN=2184 GT:DS:GL:BD 0.15018316 0 1 25929087 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0027;AVGPOST=0.9990;RSQ=0.8293;ERATE=0.0004;THETA=0.0021;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25929281 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8251;ERATE=0.0004;THETA=0.0033;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25929482 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.985;LDAF=0.1423;AVGPOST=0.9925;RSQ=0.9771;ERATE=0.0011;THETA=0.0028;AC=309;AN=2184 GT:DS:GL:BD 0.14148352 0 1 25929527 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0051;AVGPOST=0.9959;RSQ=0.7103;ERATE=0.0005;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25929612 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1480;AVGPOST=0.9954;RSQ=0.9886;ERATE=0.0007;THETA=0.0010;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 25929631 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9154;ERATE=0.0003;THETA=0.0041;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25929720 rs113695310 CCCCTCT C 4804 PASS INDEL;BAVGPOST=0.966;BRSQ=0.881;LDAF=0.1637;AVGPOST=0.9402;RSQ=0.8338;ERATE=0.0048;THETA=0.0014;AC=320;AN=2184 GT:DS:GL:BD 0.14652015 0 1 25929721 rs113695310 C CT 9 PASS INDEL;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0046;AVGPOST=0.9964;RSQ=0.7092;ERATE=0.0006;THETA=0.0045;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25929888 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.850;LDAF=0.1246;AVGPOST=0.9734;RSQ=0.9215;ERATE=0.0006;THETA=0.0032;AC=281;AN=2184 GT:DS:GL:BD 0.12866300 0 1 25929897 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.849;LDAF=0.1236;AVGPOST=0.9754;RSQ=0.9261;ERATE=0.0007;THETA=0.0023;AC=281;AN=2184 GT:DS:GL:BD 0.12866300 0 1 25929961 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.933;BRSQ=0.683;LDAF=0.1035;AVGPOST=0.9553;RSQ=0.8427;ERATE=0.0012;THETA=0.0015;AC=233;AN=2184 GT:DS:GL:BD 0.10668498 0 1 25930348 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.898;BRSQ=0.496;LDAF=0.1160;AVGPOST=0.9485;RSQ=0.8296;ERATE=0.0016;THETA=0.0004;AC=265;AN=2184 GT:DS:GL:BD 0.12133700 0 1 25930424 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.954;BRSQ=0.334;LDAF=0.0582;AVGPOST=0.9271;RSQ=0.5122;ERATE=0.0034;THETA=0.0045;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 25930430 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.355;LDAF=0.0656;AVGPOST=0.9005;RSQ=0.3426;ERATE=0.0128;THETA=0.0013;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 25930437 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.254;LDAF=0.0655;AVGPOST=0.9032;RSQ=0.3725;ERATE=0.0090;THETA=0.0009;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 25931133 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.944;BRSQ=0.456;LDAF=0.9013;AVGPOST=0.8654;RSQ=0.3961;ERATE=0.0122;THETA=0.0009;AC=2088;AN=2184 GT:DS:GL:BD 0.95604396 1 1 25931254 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.854;LDAF=0.1250;AVGPOST=0.9783;RSQ=0.9331;ERATE=0.0014;THETA=0.0007;AC=275;AN=2184 GT:DS:GL:BD 0.12591575 0 1 25931338 . CTTGT C 19 PASS INDEL;BAVGPOST=0.999;BRSQ=0.449;LDAF=0.0034;AVGPOST=0.9948;RSQ=0.3626;ERATE=0.0008;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25931389 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.959;BRSQ=0.662;LDAF=0.0681;AVGPOST=0.9520;RSQ=0.7452;ERATE=0.0012;THETA=0.0080;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 25931534 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1431;AVGPOST=0.9984;RSQ=0.9946;ERATE=0.0006;THETA=0.0010;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 25931648 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1383;AVGPOST=0.9984;RSQ=0.9956;ERATE=0.0004;THETA=0.0011;AC=301;AN=2184 GT:DS:GL:BD 0.13782051 0 1 25931739 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.769;LDAF=0.0054;AVGPOST=0.9970;RSQ=0.7626;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25931775 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1426;AVGPOST=0.9997;RSQ=0.9990;ERATE=0.0003;THETA=0.0008;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 25931866 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25931898 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25932002 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25932085 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1429;AVGPOST=0.9993;RSQ=0.9975;ERATE=0.0005;THETA=0.0005;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 25932143 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9141;ERATE=0.0005;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25932164 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.714;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25932177 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0017;AVGPOST=0.9987;RSQ=0.6881;ERATE=0.0007;THETA=0.0024;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25932186 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.986;LDAF=0.1344;AVGPOST=0.9871;RSQ=0.9612;ERATE=0.0007;THETA=0.0008;AC=290;AN=2184 GT:DS:GL:BD 0.13278389 0 1 25932311 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.1427;AVGPOST=0.9974;RSQ=0.9924;ERATE=0.0005;THETA=0.0006;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 25932396 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5120;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25932461 . A AAC 16837 PASS INDEL;BAVGPOST=0.978;BRSQ=0.919;LDAF=0.1342;AVGPOST=0.9877;RSQ=0.9653;ERATE=0.0004;THETA=0.0010;AC=297;AN=2184 GT:DS:GL:BD 0.13598901 0 1 25932494 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25932654 rs111861199 AG A 15121 PASS INDEL;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1427;AVGPOST=0.9987;RSQ=0.9956;ERATE=0.0006;THETA=0.0007;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 25932750 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0042;AVGPOST=0.9985;RSQ=0.8604;ERATE=0.0005;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25932824 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0063;AVGPOST=0.9991;RSQ=0.9457;ERATE=0.0004;THETA=0.0010;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 25932838 . CGAGGAGGGGA C 571 PASS INDEL;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7929;ERATE=0.0006;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25932890 . TAGAC T 42 PASS INDEL;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4968;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25932998 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2229;AVGPOST=0.9975;RSQ=0.9957;ERATE=0.0004;THETA=0.0006;AC=488;AN=2184 GT:DS:GL:BD 0.22344323 0 1 25933077 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5993;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25933110 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6854;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25933175 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1426;AVGPOST=0.9998;RSQ=0.9994;ERATE=0.0003;THETA=0.0016;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 25933277 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.6942;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25933461 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25933509 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9647;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25933542 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1484;AVGPOST=0.9984;RSQ=0.9958;ERATE=0.0004;THETA=0.0005;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 25933692 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25933774 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1379;AVGPOST=0.9992;RSQ=0.9972;ERATE=0.0003;THETA=0.0013;AC=301;AN=2184 GT:DS:GL:BD 0.13782051 0 1 25933883 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9373;ERATE=0.0007;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25933967 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9997;RSQ=0.9744;ERATE=0.0004;THETA=0.0062;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 25933974 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25934028 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7917;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25934029 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9401;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25934156 rs58740613 TG T 14688 PASS INDEL;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.1433;AVGPOST=0.9940;RSQ=0.9845;ERATE=0.0006;THETA=0.0017;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 25934269 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.940;LDAF=0.1420;AVGPOST=0.9943;RSQ=0.9826;ERATE=0.0007;THETA=0.0009;AC=308;AN=2184 GT:DS:GL:BD 0.14102565 0 1 25934304 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0028;AVGPOST=0.9979;RSQ=0.6904;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25934338 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.937;LDAF=0.0179;AVGPOST=0.9931;RSQ=0.8565;ERATE=0.0007;THETA=0.0014;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 25934362 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5353;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25934529 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.687;LDAF=0.0020;AVGPOST=0.9980;RSQ=0.6136;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25934551 . AC A 4191 PASS INDEL;BAVGPOST=0.989;BRSQ=0.964;LDAF=0.1567;AVGPOST=0.9641;RSQ=0.9045;ERATE=0.0038;THETA=0.0006;AC=320;AN=2184 GT:DS:GL:BD 0.14652015 0 1 25934700 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.557;LDAF=0.0096;AVGPOST=0.9898;RSQ=0.5279;ERATE=0.0011;THETA=0.0015;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 25934858 rs71696232 C CA 812 PASS INDEL;BAVGPOST=0.679;BRSQ=0.069;LDAF=0.8184;AVGPOST=0.7346;RSQ=0.2828;ERATE=0.0098;THETA=0.0005;AC=1979;AN=2184 GT:DS:GL:BD 0.90613556 1 1 25934950 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5646;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25934951 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.983;LDAF=0.1391;AVGPOST=0.9925;RSQ=0.9790;ERATE=0.0006;THETA=0.0016;AC=304;AN=2184 GT:DS:GL:BD 0.13919415 0 1 25935069 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5467;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25935362 . TTA T 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25935364 . AT A 220 PASS INDEL;BAVGPOST=0.999;BRSQ=0.704;LDAF=0.0033;AVGPOST=0.9971;RSQ=0.6576;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25935409 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.890;LDAF=0.0147;AVGPOST=0.9957;RSQ=0.8841;ERATE=0.0005;THETA=0.0006;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 25935431 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0004;THETA=0.0046;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25935453 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0027;AVGPOST=0.9963;RSQ=0.4549;ERATE=0.0008;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25935479 rs112580391 AT A 15433 PASS INDEL;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.2177;AVGPOST=0.9954;RSQ=0.9917;ERATE=0.0007;THETA=0.0012;AC=476;AN=2184 GT:DS:GL:BD 0.21794872 0 1 25935521 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7568;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25935668 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.9809;AVGPOST=0.9978;RSQ=0.9473;ERATE=0.0005;THETA=0.0045;AC=2143;AN=2184 GT:DS:GL:BD 0.98122710 1 1 25935670 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5854;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25935672 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.836;LDAF=0.0067;AVGPOST=0.9958;RSQ=0.7746;ERATE=0.0005;THETA=0.0011;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 25935828 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9469;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25935886 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.968;LDAF=0.0862;AVGPOST=0.9947;RSQ=0.9779;ERATE=0.0004;THETA=0.0021;AC=186;AN=2184 GT:DS:GL:BD 0.08516484 0 1 25935959 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9664;ERATE=0.0003;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25936061 . T TG 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5469;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25936079 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.9118;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25936250 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1425;AVGPOST=0.9993;RSQ=0.9979;ERATE=0.0004;THETA=0.0005;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 25936563 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1369;AVGPOST=0.9974;RSQ=0.9922;ERATE=0.0004;THETA=0.0009;AC=301;AN=2184 GT:DS:GL:BD 0.13782051 0 1 25936688 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25936718 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0026;AVGPOST=0.9967;RSQ=0.5192;ERATE=0.0009;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25936944 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25937006 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8860;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25937048 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25937426 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0758;AVGPOST=0.9991;RSQ=0.9965;ERATE=0.0004;THETA=0.0038;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 25937616 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.947;LDAF=0.0086;AVGPOST=0.9990;RSQ=0.9531;ERATE=0.0004;THETA=0.0008;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 25937641 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1425;AVGPOST=0.9997;RSQ=0.9989;ERATE=0.0003;THETA=0.0012;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 25937711 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0036;AVGPOST=0.9993;RSQ=0.9103;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25937830 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25937852 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0762;AVGPOST=0.9991;RSQ=0.9961;ERATE=0.0004;THETA=0.0013;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 25937861 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.742;LDAF=0.0019;AVGPOST=0.9993;RSQ=0.8423;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25937888 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0761;AVGPOST=0.9995;RSQ=0.9970;ERATE=0.0004;THETA=0.0006;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 25937953 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0004;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25937959 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8677;ERATE=0.0004;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25938005 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8116;ERATE=0.0005;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25938048 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.9037;ERATE=0.0004;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25938197 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1434;AVGPOST=0.9995;RSQ=0.9982;ERATE=0.0004;THETA=0.0006;AC=314;AN=2184 GT:DS:GL:BD 0.14377290 0 1 25938224 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8149;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25938276 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1432;AVGPOST=0.9987;RSQ=0.9965;ERATE=0.0003;THETA=0.0013;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 25938402 . CCT C 269 PASS INDEL;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25938448 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25938700 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7345;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25938763 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0758;AVGPOST=0.9998;RSQ=0.9987;ERATE=0.0003;THETA=0.0003;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 25938809 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25938880 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9359;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25938892 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25938897 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25938925 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2182;AVGPOST=0.9992;RSQ=0.9984;ERATE=0.0003;THETA=0.0011;AC=478;AN=2184 GT:DS:GL:BD 0.21886447 0 1 25938947 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.949;LDAF=0.0445;AVGPOST=0.9961;RSQ=0.9682;ERATE=0.0004;THETA=0.0012;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 25938971 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.673;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6852;ERATE=0.0004;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25939002 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6244;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25939007 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8148;ERATE=0.0003;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25939015 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25939028 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0760;AVGPOST=0.9998;RSQ=0.9987;ERATE=0.0003;THETA=0.0010;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 25939043 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9927;ERATE=0.0004;THETA=0.0021;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 25939060 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2174;AVGPOST=0.9992;RSQ=0.9986;ERATE=0.0003;THETA=0.0009;AC=475;AN=2184 GT:DS:GL:BD 0.21749084 0 1 25939090 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.6162;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25939094 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9213;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25939121 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6883;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25939276 . GGCTAGAGA G 355 PASS INDEL;BAVGPOST=0.998;BRSQ=0.728;LDAF=0.0036;AVGPOST=0.9973;RSQ=0.7051;ERATE=0.0017;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25939292 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.755;LDAF=0.0045;AVGPOST=0.9982;RSQ=0.8278;ERATE=0.0012;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25939319 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1432;AVGPOST=0.9984;RSQ=0.9956;ERATE=0.0005;THETA=0.0007;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 25939358 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.597;LDAF=0.0016;AVGPOST=0.9980;RSQ=0.5660;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25939392 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0051;AVGPOST=0.9985;RSQ=0.8841;ERATE=0.0005;THETA=0.0024;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 25939543 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0755;AVGPOST=0.9998;RSQ=0.9991;ERATE=0.0003;THETA=0.0012;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 25939574 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1475;AVGPOST=0.9988;RSQ=0.9972;ERATE=0.0003;THETA=0.0004;AC=323;AN=2184 GT:DS:GL:BD 0.14789377 0 1 25939608 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0759;AVGPOST=0.9999;RSQ=0.9995;ERATE=0.0003;THETA=0.0011;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 25939666 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8495;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25939716 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8109;ERATE=0.0004;THETA=0.0045;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25939898 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.914;LDAF=0.0356;AVGPOST=0.9952;RSQ=0.9441;ERATE=0.0005;THETA=0.0004;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 25939977 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7953;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25939989 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7348;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25939996 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25940020 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1417;AVGPOST=0.9997;RSQ=0.9991;ERATE=0.0003;THETA=0.0007;AC=310;AN=2184 GT:DS:GL:BD 0.14194140 0 1 25940026 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25940065 rs60742286 GAATA G 18887 PASS INDEL;BAVGPOST=0.990;BRSQ=0.963;LDAF=0.1375;AVGPOST=0.9968;RSQ=0.9894;ERATE=0.0017;THETA=0.0003;AC=301;AN=2184 GT:DS:GL:BD 0.13782051 0 1 25940096 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5504;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25940186 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0051;AVGPOST=0.9990;RSQ=0.9394;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 25940261 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8448;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25940813 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2184;AVGPOST=0.9993;RSQ=0.9985;ERATE=0.0003;THETA=0.0048;AC=478;AN=2184 GT:DS:GL:BD 0.21886447 0 1 25940824 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0028;AVGPOST=0.9988;RSQ=0.8335;ERATE=0.0004;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25940931 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0755;AVGPOST=0.9996;RSQ=0.9980;ERATE=0.0004;THETA=0.0011;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 25940945 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5407;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25941014 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0765;AVGPOST=0.9993;RSQ=0.9961;ERATE=0.0004;THETA=0.0008;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 25941015 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0003;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25941027 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25941046 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0755;AVGPOST=0.9997;RSQ=0.9982;ERATE=0.0003;THETA=0.0007;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 25941429 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0013;AVGPOST=0.9997;RSQ=0.9159;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25941522 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0045;AVGPOST=0.9981;RSQ=0.8466;ERATE=0.0009;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25941707 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6031;ERATE=0.0004;THETA=0.0042;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25941770 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8409;ERATE=0.0005;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25941936 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2203;AVGPOST=0.9982;RSQ=0.9965;ERATE=0.0005;THETA=0.0006;AC=481;AN=2184 GT:DS:GL:BD 0.22023809 0 1 25941976 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.684;LDAF=0.0026;AVGPOST=0.9989;RSQ=0.8307;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25942020 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0020;AVGPOST=0.9993;RSQ=0.8742;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25942070 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.9088;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25942335 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6671;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25942360 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.641;LDAF=0.0201;AVGPOST=0.9836;RSQ=0.6794;ERATE=0.0087;THETA=0.0009;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 25942427 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7306;ERATE=0.0013;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25942678 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.599;LDAF=0.0143;AVGPOST=0.9877;RSQ=0.6658;ERATE=0.0007;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 25942685 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2199;AVGPOST=0.9967;RSQ=0.9933;ERATE=0.0011;THETA=0.0006;AC=481;AN=2184 GT:DS:GL:BD 0.22023809 0 1 25942896 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.433;LDAF=0.0199;AVGPOST=0.9832;RSQ=0.6531;ERATE=0.0012;THETA=0.0008;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 25942905 . TG T 550 PASS INDEL;BAVGPOST=0.985;BRSQ=0.701;LDAF=0.0233;AVGPOST=0.9938;RSQ=0.8937;ERATE=0.0008;THETA=0.0009;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 25943088 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.949;BRSQ=0.803;LDAF=0.1377;AVGPOST=0.9728;RSQ=0.9165;ERATE=0.0016;THETA=0.0012;AC=305;AN=2184 GT:DS:GL:BD 0.13965201 0 1 25943096 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.507;LDAF=0.0262;AVGPOST=0.9681;RSQ=0.5474;ERATE=0.0015;THETA=0.0007;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 25943133 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.359;LDAF=0.0470;AVGPOST=0.9529;RSQ=0.6198;ERATE=0.0026;THETA=0.0010;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 25943145 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.731;BRSQ=0.336;LDAF=0.2908;AVGPOST=0.7935;RSQ=0.5966;ERATE=0.0085;THETA=0.0006;AC=573;AN=2184 GT:DS:GL:BD 0.26236263 0 1 25943200 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.785;BRSQ=0.007;LDAF=0.1406;AVGPOST=0.7683;RSQ=0.2117;ERATE=0.0117;THETA=0.0010;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 25943293 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.887;BRSQ=0.014;LDAF=0.0554;AVGPOST=0.9261;RSQ=0.4246;ERATE=0.0023;THETA=0.0032;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 25943300 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.887;BRSQ=0.008;LDAF=0.0192;AVGPOST=0.9691;RSQ=0.2847;ERATE=0.0025;THETA=0.0010;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 25943513 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.605;LDAF=0.0685;AVGPOST=0.9436;RSQ=0.6620;ERATE=0.0015;THETA=0.0004;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 25944454 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0153;AVGPOST=0.9993;RSQ=0.9841;ERATE=0.0003;THETA=0.0016;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 25944741 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.2201;AVGPOST=0.9991;RSQ=0.9984;ERATE=0.0008;THETA=0.0012;AC=481;AN=2184 GT:DS:GL:BD 0.22023809 0 1 25944849 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2198;AVGPOST=0.9998;RSQ=0.9996;ERATE=0.0003;THETA=0.0004;AC=481;AN=2184 GT:DS:GL:BD 0.22023809 0 1 25944896 . TC T 72 PASS INDEL;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0033;AVGPOST=0.9988;RSQ=0.8720;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25944975 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0089;AVGPOST=0.9995;RSQ=0.9790;ERATE=0.0003;THETA=0.0009;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 25945074 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25945087 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25945126 . CA C 45 PASS INDEL;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0020;AVGPOST=0.9970;RSQ=0.4011;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25945249 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8824;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25945282 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25945324 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25945473 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0003;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25945474 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7457;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25945818 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6406;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25945828 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8806;ERATE=0.0004;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25945832 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.7354;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25945906 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0191;AVGPOST=0.9990;RSQ=0.9783;ERATE=0.0003;THETA=0.0003;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 25945967 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7980;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25945995 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7936;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25946094 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2199;AVGPOST=0.9995;RSQ=0.9989;ERATE=0.0004;THETA=0.0010;AC=481;AN=2184 GT:DS:GL:BD 0.22023809 0 1 25946118 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25946201 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=0.9997;RSQ=0.9323;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25946233 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25946591 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0449;AVGPOST=0.9988;RSQ=0.9907;ERATE=0.0003;THETA=0.0059;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 25946722 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25946759 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2212;AVGPOST=0.9991;RSQ=0.9981;ERATE=0.0005;THETA=0.0005;AC=484;AN=2184 GT:DS:GL:BD 0.22161172 0 1 25946799 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2202;AVGPOST=0.9991;RSQ=0.9983;ERATE=0.0004;THETA=0.0014;AC=482;AN=2184 GT:DS:GL:BD 0.22069597 0 1 25946935 rs3835659 T TGTAGA 46191 PASS INDEL;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2191;AVGPOST=0.9947;RSQ=0.9901;ERATE=0.0006;THETA=0.0009;AC=480;AN=2184 GT:DS:GL:BD 0.21978022 0 1 25947002 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0072;AVGPOST=0.9991;RSQ=0.9509;ERATE=0.0005;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 25947057 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5943;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25947120 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25947252 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1447;AVGPOST=0.9995;RSQ=0.9982;ERATE=0.0003;THETA=0.0005;AC=316;AN=2184 GT:DS:GL:BD 0.14468865 0 1 25947405 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25947597 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7768;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25948056 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0064;AVGPOST=0.9995;RSQ=0.9640;ERATE=0.0004;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 25948102 . TG T 109 PASS INDEL;BAVGPOST=0.999;BRSQ=0.850;LDAF=0.0071;AVGPOST=0.9987;RSQ=0.9273;ERATE=0.0005;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 25948103 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.892;LDAF=0.0090;AVGPOST=0.9968;RSQ=0.8524;ERATE=0.0009;THETA=0.0010;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 25948106 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.964;LDAF=0.0213;AVGPOST=0.9962;RSQ=0.9297;ERATE=0.0008;THETA=0.0015;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 25948122 . G GT 1775 PASS INDEL;BAVGPOST=0.976;BRSQ=0.661;LDAF=0.0521;AVGPOST=0.9501;RSQ=0.6137;ERATE=0.0120;THETA=0.0011;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 25948176 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.646;LDAF=0.0029;AVGPOST=0.9952;RSQ=0.3199;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25948185 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.532;LDAF=0.0036;AVGPOST=0.9978;RSQ=0.7501;ERATE=0.0005;THETA=0.0012;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25948201 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0031;AVGPOST=0.9985;RSQ=0.8071;ERATE=0.0005;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25948270 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5900;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25948306 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25948390 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.601;LDAF=0.0022;AVGPOST=0.9975;RSQ=0.4931;ERATE=0.0007;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25948398 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.550;LDAF=0.0055;AVGPOST=0.9929;RSQ=0.4974;ERATE=0.0017;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25948442 . GA G 1614 PASS INDEL;BAVGPOST=0.990;BRSQ=0.763;LDAF=0.0160;AVGPOST=0.9933;RSQ=0.8266;ERATE=0.0005;THETA=0.0008;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 25948468 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0035;AVGPOST=0.9980;RSQ=0.7937;ERATE=0.0007;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25948548 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0038;AVGPOST=0.9992;RSQ=0.9144;ERATE=0.0004;THETA=0.0012;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25948876 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.8956;ERATE=0.0003;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25948947 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2208;AVGPOST=0.9992;RSQ=0.9984;ERATE=0.0005;THETA=0.0013;AC=483;AN=2184 GT:DS:GL:BD 0.22115384 0 1 25948948 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0056;AVGPOST=0.9984;RSQ=0.8798;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 25949059 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6526;ERATE=0.0004;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25949345 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8118;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25949355 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0059;AVGPOST=0.9998;RSQ=0.9837;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 25949464 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2207;AVGPOST=0.9994;RSQ=0.9988;ERATE=0.0003;THETA=0.0004;AC=483;AN=2184 GT:DS:GL:BD 0.22115384 0 1 25949547 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25949576 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2204;AVGPOST=0.9971;RSQ=0.9952;ERATE=0.0006;THETA=0.0018;AC=483;AN=2184 GT:DS:GL:BD 0.22115384 0 1 25949600 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2208;AVGPOST=0.9999;RSQ=0.9998;ERATE=0.0003;THETA=0.0008;AC=483;AN=2184 GT:DS:GL:BD 0.22115384 0 1 25949669 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1451;AVGPOST=0.9985;RSQ=0.9962;ERATE=0.0003;THETA=0.0007;AC=317;AN=2184 GT:DS:GL:BD 0.14514652 0 1 25949680 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2205;AVGPOST=0.9989;RSQ=0.9982;ERATE=0.0003;THETA=0.0005;AC=483;AN=2184 GT:DS:GL:BD 0.22115384 0 1 25949775 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.987;LDAF=0.5198;AVGPOST=0.9923;RSQ=0.9898;ERATE=0.0006;THETA=0.0007;AC=1135;AN=2184 GT:DS:GL:BD 0.51968867 1 1 25949841 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2208;AVGPOST=0.9994;RSQ=0.9986;ERATE=0.0004;THETA=0.0007;AC=483;AN=2184 GT:DS:GL:BD 0.22115384 0 1 25949849 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.2205;AVGPOST=0.9995;RSQ=0.9989;ERATE=0.0004;THETA=0.0011;AC=483;AN=2184 GT:DS:GL:BD 0.22115384 0 1 25949854 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8319;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25949868 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9294;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25949953 . GGT G 2855 PASS INDEL;BAVGPOST=0.928;BRSQ=0.783;LDAF=0.1602;AVGPOST=0.9417;RSQ=0.8614;ERATE=0.0035;THETA=0.0055;AC=354;AN=2184 GT:DS:GL:BD 0.16208792 0 1 25950154 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25950205 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0231;AVGPOST=0.9995;RSQ=0.9920;ERATE=0.0004;THETA=0.0014;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 25950219 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25950354 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2239;AVGPOST=0.9995;RSQ=0.9988;ERATE=0.0004;THETA=0.0011;AC=490;AN=2184 GT:DS:GL:BD 0.22435898 0 1 25950498 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.846;LDAF=0.0084;AVGPOST=0.9979;RSQ=0.8991;ERATE=0.0004;THETA=0.0052;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 25950520 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0444;AVGPOST=0.9998;RSQ=0.9978;ERATE=0.0003;THETA=0.0008;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 25950600 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25950649 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2262;AVGPOST=0.9995;RSQ=0.9988;ERATE=0.0004;THETA=0.0006;AC=495;AN=2184 GT:DS:GL:BD 0.22664835 0 1 25950673 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2244;AVGPOST=0.9987;RSQ=0.9979;ERATE=0.0004;THETA=0.0006;AC=491;AN=2184 GT:DS:GL:BD 0.22481684 0 1 25950717 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7559;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25950748 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7117;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25950793 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25950828 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.830;LDAF=0.0031;AVGPOST=0.9972;RSQ=0.6182;ERATE=0.0005;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25950838 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8350;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25950848 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.1721;AVGPOST=0.9991;RSQ=0.9979;ERATE=0.0003;THETA=0.0005;AC=377;AN=2184 GT:DS:GL:BD 0.17261904 0 1 25950900 rs3841829 CT C 18894 PASS INDEL;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.1719;AVGPOST=0.9980;RSQ=0.9953;ERATE=0.0006;THETA=0.0021;AC=376;AN=2184 GT:DS:GL:BD 0.17216118 0 1 25951083 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.617;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6651;ERATE=0.0004;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25951166 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1823;AVGPOST=0.9995;RSQ=0.9987;ERATE=0.0004;THETA=0.0006;AC=399;AN=2184 GT:DS:GL:BD 0.18269230 0 1 25951243 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6230;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25951251 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0018;AVGPOST=0.9993;RSQ=0.8625;ERATE=0.0004;THETA=0.0035;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25951388 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0147;AVGPOST=0.9997;RSQ=0.9910;ERATE=0.0004;THETA=0.0020;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 25951474 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0196;AVGPOST=0.9986;RSQ=0.9733;ERATE=0.0004;THETA=0.0006;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 25951537 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2279;AVGPOST=0.9939;RSQ=0.9894;ERATE=0.0010;THETA=0.0012;AC=497;AN=2184 GT:DS:GL:BD 0.22756410 0 1 25951600 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.631;LDAF=0.0032;AVGPOST=0.9945;RSQ=0.3351;ERATE=0.0006;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25951740 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.939;LDAF=0.1457;AVGPOST=0.9929;RSQ=0.9805;ERATE=0.0007;THETA=0.0008;AC=317;AN=2184 GT:DS:GL:BD 0.14514652 0 1 25951743 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6094;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25951773 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7335;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25951782 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9282;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25951919 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0448;AVGPOST=0.9994;RSQ=0.9949;ERATE=0.0003;THETA=0.0012;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 25951920 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25952033 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0037;AVGPOST=1.0000;RSQ=0.9941;ERATE=0.0003;THETA=0.0012;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25952065 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.870;LDAF=0.0081;AVGPOST=0.9979;RSQ=0.9165;ERATE=0.0003;THETA=0.0008;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 25952154 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0451;AVGPOST=0.9994;RSQ=0.9939;ERATE=0.0003;THETA=0.0007;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 25952175 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25952194 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9366;ERATE=0.0003;THETA=0.0017;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25952222 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0228;AVGPOST=0.9998;RSQ=0.9966;ERATE=0.0003;THETA=0.0008;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 25952342 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7044;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25952344 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9244;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25952368 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8259;ERATE=0.0004;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25952440 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0004;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25952522 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8890;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25952604 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0032;AVGPOST=0.9996;RSQ=0.9483;ERATE=0.0004;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25952658 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9314;ERATE=0.0004;THETA=0.0037;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25952703 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.857;LDAF=0.0096;AVGPOST=0.9972;RSQ=0.8888;ERATE=0.0006;THETA=0.0008;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 25952713 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6494;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25952714 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1459;AVGPOST=0.9987;RSQ=0.9962;ERATE=0.0003;THETA=0.0007;AC=318;AN=2184 GT:DS:GL:BD 0.14560440 0 1 25952727 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7504;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25952818 . CT C 500 PASS INDEL;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0030;AVGPOST=0.9988;RSQ=0.8507;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25952853 . TTC T 255 PASS INDEL;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0026;AVGPOST=0.9989;RSQ=0.8501;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25952859 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.668;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7113;ERATE=0.0007;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25952951 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.597;LDAF=0.0101;AVGPOST=0.9883;RSQ=0.5509;ERATE=0.0019;THETA=0.0009;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 25952998 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5540;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25953016 . A AT 160 PASS INDEL;BAVGPOST=0.997;BRSQ=0.624;LDAF=0.0057;AVGPOST=0.9927;RSQ=0.4365;ERATE=0.0016;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25953027 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.721;LDAF=0.0021;AVGPOST=0.9972;RSQ=0.4790;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25953057 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9670;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25953091 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0026;AVGPOST=0.9986;RSQ=0.7631;ERATE=0.0008;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25953141 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5664;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25953144 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0022;AVGPOST=0.9975;RSQ=0.5343;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25953179 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0041;AVGPOST=0.9991;RSQ=0.9122;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25953256 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.977;LDAF=0.1502;AVGPOST=0.9982;RSQ=0.9943;ERATE=0.0004;THETA=0.0005;AC=329;AN=2184 GT:DS:GL:BD 0.15064102 0 1 25953257 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7113;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25953260 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.977;LDAF=0.1484;AVGPOST=0.9982;RSQ=0.9942;ERATE=0.0004;THETA=0.0009;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 25953401 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5381;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25953465 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9799;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25953474 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0040;AVGPOST=0.9984;RSQ=0.8505;ERATE=0.0005;THETA=0.0027;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25953536 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.2386;AVGPOST=0.9875;RSQ=0.9744;ERATE=0.0012;THETA=0.0009;AC=517;AN=2184 GT:DS:GL:BD 0.23672161 0 1 25953626 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7821;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25953668 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6426;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25953702 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1485;AVGPOST=0.9990;RSQ=0.9972;ERATE=0.0003;THETA=0.0007;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 25953760 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0025;AVGPOST=0.9971;RSQ=0.5934;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25953765 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.778;LDAF=0.0035;AVGPOST=0.9966;RSQ=0.6671;ERATE=0.0006;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25953831 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.843;LDAF=0.0025;AVGPOST=0.9994;RSQ=0.8794;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25953877 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0026;AVGPOST=0.9989;RSQ=0.8554;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25953966 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5519;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25953987 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0042;AVGPOST=0.9976;RSQ=0.7754;ERATE=0.0005;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25954034 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.579;LDAF=0.0021;AVGPOST=0.9967;RSQ=0.3800;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25954193 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9209;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25954298 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0044;AVGPOST=0.9971;RSQ=0.7400;ERATE=0.0006;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25954515 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0027;AVGPOST=0.9998;RSQ=0.9624;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25954536 . T TA 13 PASS INDEL;BAVGPOST=0.999;BRSQ=0.724;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.5804;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25954585 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4773;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25954672 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.742;LDAF=0.0030;AVGPOST=0.9976;RSQ=0.6928;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25954748 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.906;LDAF=0.0061;AVGPOST=0.9983;RSQ=0.8811;ERATE=0.0006;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 25954778 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4078;ERATE=0.0007;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25954779 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0018;AVGPOST=0.9975;RSQ=0.4789;ERATE=0.0006;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25954863 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.593;LDAF=0.0056;AVGPOST=0.9948;RSQ=0.6225;ERATE=0.0008;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25954946 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0190;AVGPOST=0.9989;RSQ=0.9747;ERATE=0.0004;THETA=0.0007;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 25954947 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.745;LDAF=0.0040;AVGPOST=0.9973;RSQ=0.7078;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25954949 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.781;LDAF=0.0039;AVGPOST=0.9983;RSQ=0.8294;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25954965 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.700;LDAF=0.0027;AVGPOST=0.9966;RSQ=0.4505;ERATE=0.0007;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25954974 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4793;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25955013 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0206;AVGPOST=0.9960;RSQ=0.9330;ERATE=0.0005;THETA=0.0004;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 25955013 . G GCTCTCGAA 357 PASS INDEL;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9303;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25955141 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0063;AVGPOST=0.9975;RSQ=0.8761;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 25955332 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0038;AVGPOST=0.9994;RSQ=0.9334;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25955435 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.9019;ERATE=0.0006;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25955451 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0038;AVGPOST=0.9989;RSQ=0.8926;ERATE=0.0003;THETA=0.0016;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25955489 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0013;AVGPOST=0.9997;RSQ=0.9051;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25955549 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25955875 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25955982 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.815;LDAF=0.0041;AVGPOST=0.9975;RSQ=0.7412;ERATE=0.0005;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25956043 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1462;AVGPOST=0.9971;RSQ=0.9924;ERATE=0.0004;THETA=0.0005;AC=320;AN=2184 GT:DS:GL:BD 0.14652015 0 1 25956164 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.757;LDAF=0.0097;AVGPOST=0.9915;RSQ=0.6328;ERATE=0.0018;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 25956166 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0197;AVGPOST=0.9989;RSQ=0.9806;ERATE=0.0004;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 25956173 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0449;AVGPOST=0.9963;RSQ=0.9685;ERATE=0.0007;THETA=0.0006;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 25956244 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4564;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25956376 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5242;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25956384 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25956486 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1489;AVGPOST=0.9984;RSQ=0.9952;ERATE=0.0004;THETA=0.0010;AC=326;AN=2184 GT:DS:GL:BD 0.14926741 0 1 25956487 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0035;AVGPOST=0.9984;RSQ=0.8314;ERATE=0.0004;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25956494 . T TC 259 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0027;AVGPOST=0.9995;RSQ=0.9229;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25956508 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9983;RSQ=0.7826;ERATE=0.0004;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25956557 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9497;ERATE=0.0005;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25956664 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.984;LDAF=0.3072;AVGPOST=0.9936;RSQ=0.9883;ERATE=0.0010;THETA=0.0017;AC=671;AN=2184 GT:DS:GL:BD 0.30723444 0 1 25956745 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9331;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25956828 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0028;AVGPOST=0.9997;RSQ=0.9457;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25956851 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.821;LDAF=0.0095;AVGPOST=0.9965;RSQ=0.8348;ERATE=0.0005;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 25956874 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0024;AVGPOST=0.9981;RSQ=0.7166;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25956928 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6446;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25956942 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25956955 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1462;AVGPOST=0.9985;RSQ=0.9953;ERATE=0.0005;THETA=0.0006;AC=320;AN=2184 GT:DS:GL:BD 0.14652015 0 1 25957014 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0028;AVGPOST=0.9996;RSQ=0.9407;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25957114 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0028;AVGPOST=0.9995;RSQ=0.9270;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25957126 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0503;AVGPOST=0.9992;RSQ=0.9939;ERATE=0.0004;THETA=0.0006;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 25957212 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2853;AVGPOST=0.9975;RSQ=0.9947;ERATE=0.0004;THETA=0.0004;AC=622;AN=2184 GT:DS:GL:BD 0.28479853 0 1 25957286 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5538;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25957486 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0195;AVGPOST=0.9987;RSQ=0.9777;ERATE=0.0004;THETA=0.0006;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 25957487 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9403;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25957548 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0031;AVGPOST=0.9991;RSQ=0.8663;ERATE=0.0005;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25957554 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.1488;AVGPOST=0.9990;RSQ=0.9968;ERATE=0.0003;THETA=0.0009;AC=326;AN=2184 GT:DS:GL:BD 0.14926741 0 1 25957739 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.987;LDAF=0.5368;AVGPOST=0.9906;RSQ=0.9882;ERATE=0.0010;THETA=0.0012;AC=1179;AN=2184 GT:DS:GL:BD 0.53983516 1 1 25957747 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.867;LDAF=0.0087;AVGPOST=0.9981;RSQ=0.9058;ERATE=0.0004;THETA=0.0008;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 25957752 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.8946;ERATE=0.0004;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25957848 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.655;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5538;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25957898 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0093;AVGPOST=0.9989;RSQ=0.9488;ERATE=0.0003;THETA=0.0008;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 25957916 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0027;AVGPOST=0.9998;RSQ=0.9624;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25957929 . G GT 8 PASS INDEL;BAVGPOST=0.999;BRSQ=0.801;LDAF=0.0033;AVGPOST=0.9965;RSQ=0.6274;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25957937 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.607;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5647;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25958083 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25958235 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9700;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25958236 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5882;ERATE=0.0005;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25958258 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5926;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25958281 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.7182;ERATE=0.0004;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25958323 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8124;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25958361 . CA C 6 PASS INDEL;BAVGPOST=0.999;BRSQ=0.637;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7012;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25958367 . A AT 647 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25958412 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.870;LDAF=0.0141;AVGPOST=0.9984;RSQ=0.9554;ERATE=0.0005;THETA=0.0011;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 25958419 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0031;AVGPOST=0.9990;RSQ=0.8557;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25958477 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.850;LDAF=0.0088;AVGPOST=0.9980;RSQ=0.9003;ERATE=0.0004;THETA=0.0009;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 25958506 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0042;AVGPOST=0.9990;RSQ=0.9008;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25958522 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7839;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25958529 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0201;AVGPOST=0.9977;RSQ=0.9551;ERATE=0.0006;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 25958678 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8260;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25958750 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0040;AVGPOST=0.9992;RSQ=0.9049;ERATE=0.0003;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25958864 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0029;AVGPOST=0.9986;RSQ=0.8059;ERATE=0.0005;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25958926 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4347;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25958989 . ACTT A 40 PASS INDEL;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0022;AVGPOST=0.9974;RSQ=0.4947;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25959062 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.706;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6863;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25959092 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0031;AVGPOST=0.9992;RSQ=0.8801;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25959173 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6817;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25959174 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.882;LDAF=0.0215;AVGPOST=0.9970;RSQ=0.9482;ERATE=0.0003;THETA=0.0008;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 25959317 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0035;AVGPOST=0.9984;RSQ=0.7956;ERATE=0.0005;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25959326 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25959547 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0028;AVGPOST=0.9987;RSQ=0.8018;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25959605 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.849;LDAF=0.0040;AVGPOST=0.9979;RSQ=0.7976;ERATE=0.0009;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25959663 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0455;AVGPOST=0.9990;RSQ=0.9930;ERATE=0.0003;THETA=0.0007;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 25959696 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6523;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25959746 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9618;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25959856 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25960009 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.831;LDAF=0.0137;AVGPOST=0.9952;RSQ=0.8619;ERATE=0.0004;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 25960040 rs66863964 TC T 8115 PASS INDEL;BAVGPOST=0.805;BRSQ=0.660;LDAF=0.5043;AVGPOST=0.7464;RSQ=0.6070;ERATE=0.0469;THETA=0.0017;AC=1022;AN=2184 GT:DS:GL:BD 0.46794870 0 1 25960122 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9535;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25960167 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25960205 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.2835;AVGPOST=0.9946;RSQ=0.9898;ERATE=0.0005;THETA=0.0008;AC=618;AN=2184 GT:DS:GL:BD 0.28296703 0 1 25960221 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.834;LDAF=0.0024;AVGPOST=0.9994;RSQ=0.8878;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25960339 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0019;AVGPOST=0.9994;RSQ=0.8541;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25960371 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0452;AVGPOST=0.9986;RSQ=0.9903;ERATE=0.0003;THETA=0.0011;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 25960394 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5908;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25960610 . A AT 146 PASS INDEL;BAVGPOST=1.000;BRSQ=0.693;LDAF=0.0025;AVGPOST=0.9954;RSQ=0.2357;ERATE=0.0007;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25960676 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25960728 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7343;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25960830 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0038;AVGPOST=0.9995;RSQ=0.9358;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25960858 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7280;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25960945 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8829;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25960954 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6343;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25961153 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0031;AVGPOST=0.9992;RSQ=0.8902;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25961218 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.570;LDAF=0.0029;AVGPOST=0.9969;RSQ=0.5710;ERATE=0.0009;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25961243 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.664;LDAF=0.0043;AVGPOST=0.9961;RSQ=0.6083;ERATE=0.0010;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25961259 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.534;LDAF=0.0059;AVGPOST=0.9924;RSQ=0.4804;ERATE=0.0009;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25961319 rs66846301 AT A 2003 PASS INDEL;BAVGPOST=0.951;BRSQ=0.812;LDAF=0.1250;AVGPOST=0.9602;RSQ=0.8811;ERATE=0.0022;THETA=0.0007;AC=281;AN=2184 GT:DS:GL:BD 0.12866300 0 1 25961320 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.943;LDAF=0.1477;AVGPOST=0.9895;RSQ=0.9694;ERATE=0.0006;THETA=0.0008;AC=323;AN=2184 GT:DS:GL:BD 0.14789377 0 1 25961373 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5966;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25961544 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9108;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25961557 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25961588 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.983;LDAF=0.1483;AVGPOST=0.9983;RSQ=0.9945;ERATE=0.0003;THETA=0.0002;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 25961759 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0029;AVGPOST=0.9985;RSQ=0.8111;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25961766 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.828;LDAF=0.0082;AVGPOST=0.9953;RSQ=0.7913;ERATE=0.0006;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 25961766 . T TG 195 PASS INDEL;BAVGPOST=0.993;BRSQ=0.582;LDAF=0.0141;AVGPOST=0.9858;RSQ=0.5912;ERATE=0.0044;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 25961769 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0232;AVGPOST=0.9992;RSQ=0.9855;ERATE=0.0003;THETA=0.0010;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 25961947 . ATG A 3887 PASS INDEL;BAVGPOST=0.589;BRSQ=0.229;LDAF=0.4463;AVGPOST=0.6554;RSQ=0.3499;ERATE=0.0914;THETA=0.0004;AC=822;AN=2184 GT:DS:GL:BD 0.37637362 0 1 25962088 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.505;LDAF=0.0019;AVGPOST=0.9970;RSQ=0.3451;ERATE=0.0006;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25962098 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0190;AVGPOST=0.9993;RSQ=0.9840;ERATE=0.0005;THETA=0.0011;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 25962218 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8599;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25962269 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.2198;AVGPOST=0.9996;RSQ=0.9992;ERATE=0.0003;THETA=0.0008;AC=481;AN=2184 GT:DS:GL:BD 0.22023809 0 1 25962349 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.853;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8567;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25962352 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25962388 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1486;AVGPOST=0.9983;RSQ=0.9947;ERATE=0.0005;THETA=0.0006;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 25962428 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.5797;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25962462 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.723;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4568;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25962472 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.733;LDAF=0.0027;AVGPOST=0.9968;RSQ=0.5609;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25962684 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.652;LDAF=0.0019;AVGPOST=0.9976;RSQ=0.5359;ERATE=0.0005;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25962829 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.542;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5364;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25962846 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.871;LDAF=0.0070;AVGPOST=0.9942;RSQ=0.6517;ERATE=0.0023;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 25962864 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1467;AVGPOST=0.9987;RSQ=0.9960;ERATE=0.0004;THETA=0.0009;AC=321;AN=2184 GT:DS:GL:BD 0.14697802 0 1 25962944 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.647;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4319;ERATE=0.0006;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25962950 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.725;LDAF=0.0016;AVGPOST=0.9976;RSQ=0.4161;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25963057 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5899;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25963211 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.989;LDAF=0.2193;AVGPOST=0.9965;RSQ=0.9932;ERATE=0.0007;THETA=0.0006;AC=481;AN=2184 GT:DS:GL:BD 0.22023809 0 1 25963343 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.694;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7024;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25963417 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.986;LDAF=0.2024;AVGPOST=0.9973;RSQ=0.9945;ERATE=0.0005;THETA=0.0009;AC=443;AN=2184 GT:DS:GL:BD 0.20283882 0 1 25963529 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.599;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4979;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25963554 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0034;AVGPOST=0.9965;RSQ=0.6282;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25963602 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0151;AVGPOST=0.9968;RSQ=0.9192;ERATE=0.0005;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 25963644 . C CA 108 PASS INDEL;BAVGPOST=0.969;BRSQ=0.438;LDAF=0.0504;AVGPOST=0.9368;RSQ=0.4676;ERATE=0.0093;THETA=0.0006;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 25963798 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0033;AVGPOST=0.9980;RSQ=0.7372;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25963913 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.745;LDAF=0.0022;AVGPOST=0.9979;RSQ=0.6132;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25964022 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8320;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25964050 . CACTT C 47 PASS INDEL;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6867;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25964068 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8452;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25964071 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6447;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25964203 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2889;AVGPOST=0.9968;RSQ=0.9933;ERATE=0.0005;THETA=0.0006;AC=630;AN=2184 GT:DS:GL:BD 0.28846154 0 1 25964287 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6774;ERATE=0.0005;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25964359 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25964375 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25964395 . C CT 16034 PASS INDEL;BAVGPOST=0.977;BRSQ=0.924;LDAF=0.8678;AVGPOST=0.9783;RSQ=0.9375;ERATE=0.0005;THETA=0.0003;AC=1901;AN=2184 GT:DS:GL:BD 0.87042123 1 1 25964399 rs59296644 T TA 76556 PASS INDEL;BAVGPOST=0.978;BRSQ=0.924;LDAF=0.8658;AVGPOST=0.9768;RSQ=0.9338;ERATE=0.0006;THETA=0.0009;AC=1899;AN=2184 GT:DS:GL:BD 0.86950547 1 1 25964474 . T TG 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.663;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4979;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25964478 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.1486;AVGPOST=0.9995;RSQ=0.9985;ERATE=0.0004;THETA=0.0004;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 25964664 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.9121;ERATE=0.0003;THETA=0.0017;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25964673 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25964677 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1485;AVGPOST=0.9993;RSQ=0.9978;ERATE=0.0004;THETA=0.0004;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 25964745 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.1488;AVGPOST=0.9993;RSQ=0.9975;ERATE=0.0004;THETA=0.0003;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 25964767 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25964857 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0033;AVGPOST=0.9971;RSQ=0.6904;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25964876 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0188;AVGPOST=0.9999;RSQ=0.9978;ERATE=0.0003;THETA=0.0003;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 25964927 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0164;AVGPOST=0.9991;RSQ=0.9784;ERATE=0.0004;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 25965106 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.1488;AVGPOST=0.9993;RSQ=0.9977;ERATE=0.0003;THETA=0.0008;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 25965178 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5064;AVGPOST=0.9983;RSQ=0.9975;ERATE=0.0004;THETA=0.0004;AC=1106;AN=2184 GT:DS:GL:BD 0.50641024 1 1 25965196 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25965280 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0450;AVGPOST=0.9985;RSQ=0.9896;ERATE=0.0004;THETA=0.0004;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 25965313 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8057;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25965344 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0188;AVGPOST=0.9999;RSQ=0.9967;ERATE=0.0003;THETA=0.0009;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 25965401 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.5316;AVGPOST=0.9979;RSQ=0.9972;ERATE=0.0004;THETA=0.0004;AC=1161;AN=2184 GT:DS:GL:BD 0.53159338 1 1 25965456 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.8160;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25965462 . T TC 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5169;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25965548 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25965602 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0028;AVGPOST=0.9971;RSQ=0.5899;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25965706 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0189;AVGPOST=0.9995;RSQ=0.9882;ERATE=0.0004;THETA=0.0004;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 25965832 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0050;AVGPOST=0.9998;RSQ=0.9826;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 25965836 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0450;AVGPOST=0.9987;RSQ=0.9906;ERATE=0.0003;THETA=0.0004;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 25965920 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9666;ERATE=0.0004;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 25965952 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6263;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25966101 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25966192 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5493;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25966254 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7185;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25966385 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0051;AVGPOST=0.9963;RSQ=0.6904;ERATE=0.0014;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25966417 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25966544 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2844;AVGPOST=0.9972;RSQ=0.9940;ERATE=0.0006;THETA=0.0004;AC=621;AN=2184 GT:DS:GL:BD 0.28434065 0 1 25966609 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25966635 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0034;AVGPOST=0.9973;RSQ=0.6778;ERATE=0.0007;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25966745 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25966886 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7012;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25966937 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0005;AVGPOST=0.9993;RSQ=0.3794;ERATE=0.0004;THETA=0.0009;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 25967011 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.529;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4213;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25967511 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1485;AVGPOST=0.9998;RSQ=0.9992;ERATE=0.0003;THETA=0.0007;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 25967529 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25967562 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2451;AVGPOST=0.9979;RSQ=0.9955;ERATE=0.0004;THETA=0.0012;AC=535;AN=2184 GT:DS:GL:BD 0.24496336 0 1 25967587 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.884;LDAF=0.9816;AVGPOST=0.9974;RSQ=0.9421;ERATE=0.0006;THETA=0.0006;AC=2145;AN=2184 GT:DS:GL:BD 0.98214287 1 1 25967626 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9442;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25967642 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.726;LDAF=0.0030;AVGPOST=0.9980;RSQ=0.7546;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25967774 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1486;AVGPOST=0.9989;RSQ=0.9962;ERATE=0.0005;THETA=0.0007;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 25967939 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6188;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25968288 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7393;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25968297 . CAA C 25 PASS INDEL;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4434;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25968343 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.901;LDAF=0.0740;AVGPOST=0.9864;RSQ=0.9286;ERATE=0.0011;THETA=0.0008;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 25968352 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9426;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25968358 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0045;AVGPOST=0.9974;RSQ=0.7803;ERATE=0.0009;THETA=0.0013;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25968369 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25968373 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.6954;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25968504 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8696;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25968621 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25968644 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.829;LDAF=0.0042;AVGPOST=0.9973;RSQ=0.7440;ERATE=0.0013;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25968650 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.888;LDAF=0.0270;AVGPOST=0.9926;RSQ=0.9011;ERATE=0.0004;THETA=0.0010;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 25968662 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25968690 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2242;AVGPOST=0.9960;RSQ=0.9933;ERATE=0.0007;THETA=0.0006;AC=489;AN=2184 GT:DS:GL:BD 0.22390109 0 1 25969008 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25969073 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0065;AVGPOST=0.9961;RSQ=0.7453;ERATE=0.0021;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 25969473 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0002;AVGPOST=0.9997;RSQ=0.0783;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 25969544 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0022;AVGPOST=0.9982;RSQ=0.6609;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25969559 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9172;ERATE=0.0004;THETA=0.0075;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25969579 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7671;ERATE=0.0004;THETA=0.0057;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25969599 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9341;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25969733 . A AT 1135 PASS INDEL;BAVGPOST=0.946;BRSQ=0.750;LDAF=0.1068;AVGPOST=0.9510;RSQ=0.8235;ERATE=0.0012;THETA=0.0009;AC=221;AN=2184 GT:DS:GL:BD 0.10119048 0 1 25969736 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.944;BRSQ=0.798;LDAF=0.1396;AVGPOST=0.9380;RSQ=0.8308;ERATE=0.0058;THETA=0.0009;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 25969737 . A AT 1651 PASS INDEL;BAVGPOST=0.941;BRSQ=0.784;LDAF=0.1290;AVGPOST=0.9474;RSQ=0.8482;ERATE=0.0009;THETA=0.0006;AC=270;AN=2184 GT:DS:GL:BD 0.12362637 0 1 25969740 . A ATTT 685 PASS INDEL;BAVGPOST=0.975;BRSQ=0.772;LDAF=0.0671;AVGPOST=0.9487;RSQ=0.6754;ERATE=0.0080;THETA=0.0005;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 25969741 . A AT 806 PASS INDEL;BAVGPOST=0.975;BRSQ=0.772;LDAF=0.0567;AVGPOST=0.9680;RSQ=0.7746;ERATE=0.0033;THETA=0.0013;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 25969782 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5981;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25969827 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.390;LDAF=0.0038;AVGPOST=0.9952;RSQ=0.4446;ERATE=0.0011;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25969848 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.554;LDAF=0.0207;AVGPOST=0.9895;RSQ=0.7787;ERATE=0.0007;THETA=0.0006;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 25969880 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.455;LDAF=0.0205;AVGPOST=0.9678;RSQ=0.3734;ERATE=0.0043;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 25969903 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.332;LDAF=0.0129;AVGPOST=0.9859;RSQ=0.5827;ERATE=0.0013;THETA=0.0009;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 25969912 rs59333906 A AT 203 PASS INDEL;BAVGPOST=0.706;BRSQ=0.079;LDAF=0.2432;AVGPOST=0.6652;RSQ=0.2252;ERATE=0.0259;THETA=0.0004;AC=238;AN=2184 GT:DS:GL:BD 0.10897436 0 1 25969962 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.534;LDAF=0.0184;AVGPOST=0.9835;RSQ=0.6571;ERATE=0.0011;THETA=0.0017;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 25970013 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0033;AVGPOST=0.9962;RSQ=0.4820;ERATE=0.0008;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25970014 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.590;LDAF=0.0091;AVGPOST=0.9929;RSQ=0.7097;ERATE=0.0008;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 25970053 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.549;LDAF=0.0022;AVGPOST=0.9975;RSQ=0.5227;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25970080 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.424;LDAF=0.0146;AVGPOST=0.9885;RSQ=0.6703;ERATE=0.0012;THETA=0.0020;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 25970092 . A AT 1088 PASS INDEL;BAVGPOST=0.917;BRSQ=0.537;LDAF=0.1066;AVGPOST=0.9508;RSQ=0.8156;ERATE=0.0013;THETA=0.0005;AC=239;AN=2184 GT:DS:GL:BD 0.10943224 0 1 25970187 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.590;LDAF=0.0104;AVGPOST=0.9915;RSQ=0.6922;ERATE=0.0006;THETA=0.0011;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 25970217 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0051;AVGPOST=0.9954;RSQ=0.6551;ERATE=0.0005;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25970280 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.668;LDAF=0.0033;AVGPOST=0.9975;RSQ=0.6456;ERATE=0.0009;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25970541 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0139;AVGPOST=0.9982;RSQ=0.9496;ERATE=0.0003;THETA=0.0020;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 25970668 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0038;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25970669 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5746;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25970704 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0090;AVGPOST=0.9993;RSQ=0.9734;ERATE=0.0003;THETA=0.0008;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 25970805 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5142;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25970988 . C CAT 1707 PASS INDEL;BAVGPOST=0.736;BRSQ=0.426;LDAF=0.3239;AVGPOST=0.7247;RSQ=0.4873;ERATE=0.0164;THETA=0.0026;AC=581;AN=2184 GT:DS:GL:BD 0.26602563 0 1 25971000 . TATATATATA T 650 PASS INDEL;BAVGPOST=0.795;BRSQ=0.032;LDAF=0.2170;AVGPOST=0.6978;RSQ=0.2690;ERATE=0.0165;THETA=0.0009;AC=226;AN=2184 GT:DS:GL:BD 0.10347985 0 1 25971004 . TATATA T 570 PASS INDEL;BAVGPOST=0.906;BRSQ=0.329;LDAF=0.0846;AVGPOST=0.9184;RSQ=0.6115;ERATE=0.0021;THETA=0.0004;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 25971006 . TATA T 684 PASS INDEL;BAVGPOST=0.834;BRSQ=0.333;LDAF=0.1697;AVGPOST=0.8339;RSQ=0.5469;ERATE=0.0035;THETA=0.0006;AC=253;AN=2184 GT:DS:GL:BD 0.11584249 0 1 25971008 . TA T 2757 PASS INDEL;BAVGPOST=0.750;BRSQ=0.409;LDAF=0.2792;AVGPOST=0.7825;RSQ=0.5847;ERATE=0.0060;THETA=0.0006;AC=478;AN=2184 GT:DS:GL:BD 0.21886447 0 1 25971009 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.771;BRSQ=0.418;LDAF=0.2472;AVGPOST=0.8051;RSQ=0.5862;ERATE=0.0054;THETA=0.0004;AC=413;AN=2184 GT:DS:GL:BD 0.18910256 0 1 25971010 . T TA 1527 PASS INDEL;BAVGPOST=0.743;BRSQ=0.422;LDAF=0.2662;AVGPOST=0.7708;RSQ=0.5436;ERATE=0.0115;THETA=0.0006;AC=451;AN=2184 GT:DS:GL:BD 0.20650183 0 1 25971309 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9035;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25971312 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4490;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25971418 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0514;AVGPOST=0.9975;RSQ=0.9827;ERATE=0.0005;THETA=0.0015;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 25971448 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5746;ERATE=0.0004;THETA=0.0095;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25971458 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.899;LDAF=0.0214;AVGPOST=0.9973;RSQ=0.9464;ERATE=0.0003;THETA=0.0006;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 25971601 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25971622 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0022;AVGPOST=0.9985;RSQ=0.7755;ERATE=0.0005;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25971646 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2417;AVGPOST=0.9959;RSQ=0.9910;ERATE=0.0004;THETA=0.0005;AC=528;AN=2184 GT:DS:GL:BD 0.24175824 0 1 25971677 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9315;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25971867 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6209;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25971918 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25972144 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0020;AVGPOST=0.9989;RSQ=0.7917;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25972172 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25972335 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8413;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25972383 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0001;AVGPOST=0.9998;RSQ=0.0498;ERATE=0.0003;THETA=0.0008;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 25972383 rs3831982 C CGAT 20076 PASS INDEL;BAVGPOST=0.983;BRSQ=0.909;LDAF=0.0890;AVGPOST=0.9901;RSQ=0.9580;ERATE=0.0006;THETA=0.0007;AC=197;AN=2184 GT:DS:GL:BD 0.09020147 0 1 25972425 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.7313;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25972622 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7238;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25972638 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.428;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6555;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25972654 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25972720 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.888;LDAF=0.0343;AVGPOST=0.9928;RSQ=0.9201;ERATE=0.0004;THETA=0.0009;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 25972746 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8767;ERATE=0.0003;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25972750 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.847;LDAF=0.0079;AVGPOST=0.9966;RSQ=0.8362;ERATE=0.0005;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 25972867 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7608;ERATE=0.0010;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25972868 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0040;AVGPOST=0.9987;RSQ=0.8847;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25972874 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25972935 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.8125;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25972943 . CAT C 22 PASS INDEL;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6049;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25972949 rs113390580 AAT A 297 PASS INDEL;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0030;AVGPOST=0.9984;RSQ=0.7671;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25973015 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6377;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25973049 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1461;AVGPOST=0.9982;RSQ=0.9949;ERATE=0.0004;THETA=0.0008;AC=319;AN=2184 GT:DS:GL:BD 0.14606227 0 1 25973082 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.899;LDAF=0.0124;AVGPOST=0.9967;RSQ=0.9132;ERATE=0.0005;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 25973093 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.7742;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25973259 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.919;LDAF=0.0079;AVGPOST=0.9993;RSQ=0.9679;ERATE=0.0004;THETA=0.0009;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 25973456 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=0.9997;RSQ=0.9356;ERATE=0.0003;THETA=0.0016;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25973458 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0188;AVGPOST=0.9999;RSQ=0.9967;ERATE=0.0003;THETA=0.0009;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 25973520 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1459;AVGPOST=0.9995;RSQ=0.9983;ERATE=0.0003;THETA=0.0006;AC=319;AN=2184 GT:DS:GL:BD 0.14606227 0 1 25973785 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25973865 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0019;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25973871 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9361;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25973922 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4423;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25974049 rs3835657 CTG C 15906 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1481;AVGPOST=0.9976;RSQ=0.9929;ERATE=0.0006;THETA=0.0004;AC=323;AN=2184 GT:DS:GL:BD 0.14789377 0 1 25974138 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25974375 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.953;LDAF=0.1350;AVGPOST=0.9892;RSQ=0.9714;ERATE=0.0004;THETA=0.0005;AC=296;AN=2184 GT:DS:GL:BD 0.13553114 0 1 25974376 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.953;LDAF=0.1344;AVGPOST=0.9894;RSQ=0.9720;ERATE=0.0003;THETA=0.0007;AC=294;AN=2184 GT:DS:GL:BD 0.13461539 0 1 25974380 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0032;AVGPOST=0.9986;RSQ=0.8042;ERATE=0.0005;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25974514 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0257;AVGPOST=0.9985;RSQ=0.9801;ERATE=0.0005;THETA=0.0007;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 25974546 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.611;LDAF=0.0023;AVGPOST=0.9964;RSQ=0.3731;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25974650 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7147;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25974684 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.6973;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25974761 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25974781 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1465;AVGPOST=0.9993;RSQ=0.9977;ERATE=0.0004;THETA=0.0006;AC=321;AN=2184 GT:DS:GL:BD 0.14697802 0 1 25974856 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1476;AVGPOST=0.9997;RSQ=0.9990;ERATE=0.0003;THETA=0.0011;AC=323;AN=2184 GT:DS:GL:BD 0.14789377 0 1 25974901 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1466;AVGPOST=0.9984;RSQ=0.9953;ERATE=0.0004;THETA=0.0004;AC=320;AN=2184 GT:DS:GL:BD 0.14652015 0 1 25975072 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7640;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25975217 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9809;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25975285 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.5050;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25975429 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2240;AVGPOST=0.9979;RSQ=0.9972;ERATE=0.0003;THETA=0.0011;AC=489;AN=2184 GT:DS:GL:BD 0.22390109 0 1 25975438 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.7489;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25975584 . CAA C 5753 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0189;AVGPOST=0.9998;RSQ=0.9948;ERATE=0.0003;THETA=0.0004;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 25975846 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25975926 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6534;ERATE=0.0003;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25976016 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0189;AVGPOST=0.9997;RSQ=0.9931;ERATE=0.0003;THETA=0.0008;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 25976285 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.935;LDAF=0.0959;AVGPOST=0.9931;RSQ=0.9711;ERATE=0.0006;THETA=0.0013;AC=211;AN=2184 GT:DS:GL:BD 0.09661172 0 1 25976372 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5522;ERATE=0.0008;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25976418 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0027;AVGPOST=0.9983;RSQ=0.7640;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25976533 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.936;LDAF=0.0164;AVGPOST=0.9989;RSQ=0.9718;ERATE=0.0003;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 25976579 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1456;AVGPOST=0.9993;RSQ=0.9977;ERATE=0.0004;THETA=0.0006;AC=318;AN=2184 GT:DS:GL:BD 0.14560440 0 1 25976760 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8196;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25976777 rs58797253 C CAA 26250 PASS INDEL;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1481;AVGPOST=0.9985;RSQ=0.9951;ERATE=0.0007;THETA=0.0005;AC=324;AN=2184 GT:DS:GL:BD 0.14835165 0 1 25976816 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7608;ERATE=0.0004;THETA=0.0020;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25976830 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25976849 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25976850 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.902;LDAF=0.0089;AVGPOST=0.9981;RSQ=0.9117;ERATE=0.0008;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 25977004 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2420;AVGPOST=0.9975;RSQ=0.9946;ERATE=0.0004;THETA=0.0003;AC=528;AN=2184 GT:DS:GL:BD 0.24175824 0 1 25977175 . CT C 1770 PASS INDEL;BAVGPOST=0.996;BRSQ=0.852;LDAF=0.0163;AVGPOST=0.9926;RSQ=0.8205;ERATE=0.0004;THETA=0.0007;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 25977179 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6023;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25977341 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0040;AVGPOST=0.9991;RSQ=0.9188;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25977444 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0026;AVGPOST=0.9975;RSQ=0.6195;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25977641 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5623;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25977646 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.508;LDAF=0.0040;AVGPOST=0.9948;RSQ=0.5179;ERATE=0.0021;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25977989 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0449;AVGPOST=0.9989;RSQ=0.9904;ERATE=0.0005;THETA=0.0010;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 25978119 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5803;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25978135 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.871;LDAF=0.0036;AVGPOST=0.9973;RSQ=0.6849;ERATE=0.0013;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25978298 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0022;AVGPOST=0.9990;RSQ=0.8217;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25978397 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.726;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25978404 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25978449 . T TGCCG 1165 PASS INDEL;BAVGPOST=0.995;BRSQ=0.790;LDAF=0.0153;AVGPOST=0.9964;RSQ=0.9070;ERATE=0.0004;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 25978646 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1471;AVGPOST=0.9987;RSQ=0.9961;ERATE=0.0004;THETA=0.0006;AC=322;AN=2184 GT:DS:GL:BD 0.14743590 0 1 25978671 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5772;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25978882 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0031;AVGPOST=0.9991;RSQ=0.8744;ERATE=0.0004;THETA=0.0019;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25978927 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2756;AVGPOST=0.9976;RSQ=0.9954;ERATE=0.0003;THETA=0.0005;AC=602;AN=2184 GT:DS:GL:BD 0.27564102 0 1 25978980 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.805;LDAF=0.0082;AVGPOST=0.9952;RSQ=0.7854;ERATE=0.0013;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 25979063 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5156;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25979140 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5174;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25979175 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1473;AVGPOST=0.9993;RSQ=0.9977;ERATE=0.0005;THETA=0.0003;AC=322;AN=2184 GT:DS:GL:BD 0.14743590 0 1 25979261 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5453;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25979280 . GA G 234 PASS INDEL;BAVGPOST=0.999;BRSQ=0.835;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.6711;ERATE=0.0006;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25979298 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5922;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25979350 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5291;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25979491 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.578;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4934;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25979601 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5968;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25979648 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.8490;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25979660 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0447;AVGPOST=0.9989;RSQ=0.9889;ERATE=0.0005;THETA=0.0006;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 25979930 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.861;LDAF=0.0093;AVGPOST=0.9979;RSQ=0.9047;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 25979960 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5290;AVGPOST=0.9976;RSQ=0.9968;ERATE=0.0011;THETA=0.0006;AC=1157;AN=2184 GT:DS:GL:BD 0.52976191 1 1 25980077 . C CAGA 73 PASS INDEL;BAVGPOST=1.000;BRSQ=0.699;LDAF=0.0032;AVGPOST=0.9958;RSQ=0.5223;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25980130 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6586;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25980131 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2740;AVGPOST=0.9977;RSQ=0.9953;ERATE=0.0005;THETA=0.0004;AC=597;AN=2184 GT:DS:GL:BD 0.27335164 0 1 25980139 . T TC 91 PASS INDEL;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4415;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25980178 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0022;AVGPOST=0.9978;RSQ=0.6833;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25980222 . G GT 117 PASS INDEL;BAVGPOST=0.999;BRSQ=0.654;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7531;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25980288 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6599;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25980294 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.758;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8824;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25980300 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.697;LDAF=0.0021;AVGPOST=0.9980;RSQ=0.6201;ERATE=0.0006;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25980306 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.6100;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25980325 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.809;LDAF=0.0027;AVGPOST=0.9982;RSQ=0.7109;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25980392 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0469;AVGPOST=0.9994;RSQ=0.9948;ERATE=0.0004;THETA=0.0004;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 25980455 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1473;AVGPOST=0.9996;RSQ=0.9988;ERATE=0.0003;THETA=0.0004;AC=322;AN=2184 GT:DS:GL:BD 0.14743590 0 1 25980650 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25980759 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0056;AVGPOST=0.9977;RSQ=0.8256;ERATE=0.0014;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 25980949 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6841;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25981034 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1466;AVGPOST=0.9996;RSQ=0.9988;ERATE=0.0004;THETA=0.0005;AC=321;AN=2184 GT:DS:GL:BD 0.14697802 0 1 25981114 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7393;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25981127 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0104;AVGPOST=0.9984;RSQ=0.9478;ERATE=0.0004;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 25981146 . C CT 110 PASS INDEL;BAVGPOST=0.963;BRSQ=0.480;LDAF=0.0589;AVGPOST=0.9252;RSQ=0.4390;ERATE=0.0238;THETA=0.0008;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 25981442 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25981644 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25981789 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2716;AVGPOST=0.9974;RSQ=0.9945;ERATE=0.0007;THETA=0.0007;AC=591;AN=2184 GT:DS:GL:BD 0.27060440 0 1 25981834 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0037;AVGPOST=0.9989;RSQ=0.8847;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25981847 . CT C 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5598;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25981892 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7227;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25981994 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25982092 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8726;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25982095 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8106;ERATE=0.0005;THETA=0.0025;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25982166 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0096;AVGPOST=0.9990;RSQ=0.9617;ERATE=0.0004;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 25982169 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5932;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25982189 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0024;AVGPOST=0.9991;RSQ=0.8399;ERATE=0.0005;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25982439 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.944;LDAF=0.0136;AVGPOST=0.9970;RSQ=0.9105;ERATE=0.0004;THETA=0.0002;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 25982586 rs59710145 C CT 868 PASS INDEL;BAVGPOST=0.644;BRSQ=0.373;LDAF=0.5477;AVGPOST=0.6661;RSQ=0.4474;ERATE=0.0187;THETA=0.0008;AC=1211;AN=2184 GT:DS:GL:BD 0.55448717 1 1 25982627 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.594;LDAF=0.0120;AVGPOST=0.9903;RSQ=0.6802;ERATE=0.0009;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 25982902 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6592;ERATE=0.0005;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25982912 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0032;AVGPOST=0.9985;RSQ=0.8055;ERATE=0.0005;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25983015 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5799;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25983056 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0038;AVGPOST=0.9995;RSQ=0.9490;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25983259 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.836;LDAF=0.0076;AVGPOST=0.9984;RSQ=0.9147;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 25983348 . GCT G 60 PASS INDEL;BAVGPOST=1.000;BRSQ=0.701;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5611;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25983379 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.691;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.4045;ERATE=0.0007;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25983518 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.799;LDAF=0.0511;AVGPOST=0.9766;RSQ=0.8310;ERATE=0.0006;THETA=0.0005;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 25983605 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.960;LDAF=0.0435;AVGPOST=0.9967;RSQ=0.9707;ERATE=0.0007;THETA=0.0004;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 25983790 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0445;AVGPOST=0.9996;RSQ=0.9962;ERATE=0.0003;THETA=0.0011;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 25983793 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8509;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25983839 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.633;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4468;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25984010 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0065;AVGPOST=0.9975;RSQ=0.8292;ERATE=0.0006;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 25984159 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.547;LDAF=0.0030;AVGPOST=0.9963;RSQ=0.5397;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25984179 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5763;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25984241 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0445;AVGPOST=0.9995;RSQ=0.9957;ERATE=0.0003;THETA=0.0008;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 25984264 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0445;AVGPOST=0.9997;RSQ=0.9975;ERATE=0.0003;THETA=0.0010;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 25984265 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.803;LDAF=0.0143;AVGPOST=0.9985;RSQ=0.9533;ERATE=0.0007;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 25984288 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.901;LDAF=0.0107;AVGPOST=0.9968;RSQ=0.8911;ERATE=0.0006;THETA=0.0011;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 25984419 . GAC G 204 PASS INDEL;BAVGPOST=0.982;BRSQ=0.588;LDAF=0.0366;AVGPOST=0.9574;RSQ=0.4995;ERATE=0.0132;THETA=0.0006;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 25984425 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.805;LDAF=0.0056;AVGPOST=0.9987;RSQ=0.8876;ERATE=0.0005;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 25984431 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6195;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25984480 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6710;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25984511 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1778;AVGPOST=0.9988;RSQ=0.9970;ERATE=0.0003;THETA=0.0006;AC=389;AN=2184 GT:DS:GL:BD 0.17811355 0 1 25984565 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0102;AVGPOST=0.9995;RSQ=0.9789;ERATE=0.0005;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 25984862 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7563;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25984918 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9393;ERATE=0.0003;THETA=0.0013;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25984950 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0056;AVGPOST=0.9971;RSQ=0.7735;ERATE=0.0020;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25984969 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7374;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25985024 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8778;ERATE=0.0004;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25985048 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8045;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25985115 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0028;AVGPOST=0.9953;RSQ=0.4412;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25985221 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0192;AVGPOST=0.9999;RSQ=0.9968;ERATE=0.0003;THETA=0.0003;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 25985238 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0033;AVGPOST=0.9964;RSQ=0.6036;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25985344 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0204;AVGPOST=0.9983;RSQ=0.9664;ERATE=0.0008;THETA=0.0006;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 25985415 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7117;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25985451 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2213;AVGPOST=0.9984;RSQ=0.9967;ERATE=0.0005;THETA=0.0002;AC=485;AN=2184 GT:DS:GL:BD 0.22206959 0 1 25985530 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.665;LDAF=0.0021;AVGPOST=0.9977;RSQ=0.5305;ERATE=0.0013;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25985624 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0199;AVGPOST=0.9991;RSQ=0.9824;ERATE=0.0004;THETA=0.0004;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 25985684 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25985837 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2226;AVGPOST=0.9986;RSQ=0.9973;ERATE=0.0004;THETA=0.0005;AC=486;AN=2184 GT:DS:GL:BD 0.22252747 0 1 25986031 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1479;AVGPOST=0.9992;RSQ=0.9976;ERATE=0.0003;THETA=0.0006;AC=323;AN=2184 GT:DS:GL:BD 0.14789377 0 1 25986037 . ATCTT A 43 PASS INDEL;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8328;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25986229 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5666;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25986230 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4322;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25986423 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5763;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25986522 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5278;AVGPOST=0.9964;RSQ=0.9951;ERATE=0.0005;THETA=0.0004;AC=1152;AN=2184 GT:DS:GL:BD 0.52747256 1 1 25986548 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0085;AVGPOST=0.9989;RSQ=0.9404;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 25986561 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0082;AVGPOST=0.9985;RSQ=0.9252;ERATE=0.0003;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 25986667 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.967;LDAF=0.1461;AVGPOST=0.9918;RSQ=0.9749;ERATE=0.0008;THETA=0.0005;AC=321;AN=2184 GT:DS:GL:BD 0.14697802 0 1 25986676 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.689;LDAF=0.0029;AVGPOST=0.9953;RSQ=0.3764;ERATE=0.0007;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25986785 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.836;LDAF=0.0591;AVGPOST=0.9782;RSQ=0.8618;ERATE=0.0008;THETA=0.0004;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 25986799 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0453;AVGPOST=0.9981;RSQ=0.9843;ERATE=0.0005;THETA=0.0005;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 25986800 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.850;LDAF=0.0038;AVGPOST=0.9984;RSQ=0.8326;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25986807 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0218;AVGPOST=0.9955;RSQ=0.9311;ERATE=0.0005;THETA=0.0016;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 25986887 . C CT 708 PASS INDEL;BAVGPOST=0.420;BRSQ=0.108;LDAF=0.3959;AVGPOST=0.6285;RSQ=0.3406;ERATE=0.0236;THETA=0.0005;AC=679;AN=2184 GT:DS:GL:BD 0.31089744 0 1 25987073 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.540;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5081;ERATE=0.0006;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25987085 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.648;LDAF=0.0157;AVGPOST=0.9920;RSQ=0.8051;ERATE=0.0008;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 25987119 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.654;LDAF=0.0032;AVGPOST=0.9947;RSQ=0.2850;ERATE=0.0011;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25987120 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.741;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.3897;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25987218 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.660;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.5848;ERATE=0.0007;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25987223 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.716;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4936;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25987248 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.976;LDAF=0.2981;AVGPOST=0.9905;RSQ=0.9832;ERATE=0.0010;THETA=0.0007;AC=653;AN=2184 GT:DS:GL:BD 0.29899266 0 1 25987376 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1506;AVGPOST=0.9972;RSQ=0.9917;ERATE=0.0005;THETA=0.0003;AC=330;AN=2184 GT:DS:GL:BD 0.15109891 0 1 25987419 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.632;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5573;ERATE=0.0008;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25987458 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2117;AVGPOST=0.9971;RSQ=0.9940;ERATE=0.0007;THETA=0.0008;AC=463;AN=2184 GT:DS:GL:BD 0.21199633 0 1 25987629 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8725;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25987635 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9643;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25987738 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.910;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.8990;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25987762 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0112;AVGPOST=0.9970;RSQ=0.9080;ERATE=0.0003;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 25987958 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0039;AVGPOST=0.9973;RSQ=0.7486;ERATE=0.0021;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25987999 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5888;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25988114 . C CA 154 PASS INDEL;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4363;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25988174 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1668;AVGPOST=0.9995;RSQ=0.9985;ERATE=0.0003;THETA=0.0009;AC=365;AN=2184 GT:DS:GL:BD 0.16712454 0 1 25988181 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.9128;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25988233 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9658;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25988258 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25988324 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25988441 . AT A 1963 PASS INDEL;BAVGPOST=0.998;BRSQ=0.939;LDAF=0.0196;AVGPOST=0.9990;RSQ=0.9780;ERATE=0.0005;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 25988451 . CT C 70 PASS INDEL;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5281;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25988487 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.717;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4485;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25988604 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7872;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25988684 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25988808 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.719;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6706;ERATE=0.0004;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25988839 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=0.9996;RSQ=0.9684;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 25988873 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8719;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25988940 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0003;AVGPOST=0.9994;RSQ=0.2260;ERATE=0.0003;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 25989061 rs71577787 G GCA 59944 PASS INDEL;BAVGPOST=0.973;BRSQ=0.959;LDAF=0.5153;AVGPOST=0.9540;RSQ=0.9433;ERATE=0.0166;THETA=0.0004;AC=1141;AN=2184 GT:DS:GL:BD 0.52243590 1 1 25989265 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.811;LDAF=0.0018;AVGPOST=0.9985;RSQ=0.6864;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25989406 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.650;LDAF=0.9490;AVGPOST=0.9534;RSQ=0.6314;ERATE=0.0068;THETA=0.0005;AC=2101;AN=2184 GT:DS:GL:BD 0.96199632 1 1 25989410 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0200;AVGPOST=0.9993;RSQ=0.9853;ERATE=0.0004;THETA=0.0007;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 25989443 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.887;LDAF=0.0174;AVGPOST=0.9981;RSQ=0.9586;ERATE=0.0003;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 25989444 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.888;LDAF=0.0181;AVGPOST=0.9957;RSQ=0.9188;ERATE=0.0005;THETA=0.0008;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 25989521 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0128;AVGPOST=0.9944;RSQ=0.8245;ERATE=0.0012;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 25989543 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.508;LDAF=0.0084;AVGPOST=0.9893;RSQ=0.4736;ERATE=0.0007;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25989581 . C CA 72 PASS INDEL;BAVGPOST=0.982;BRSQ=0.466;LDAF=0.0468;AVGPOST=0.9346;RSQ=0.4087;ERATE=0.0098;THETA=0.0005;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 25989597 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.898;LDAF=0.0198;AVGPOST=0.9927;RSQ=0.8528;ERATE=0.0009;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 25989606 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.950;LDAF=0.1492;AVGPOST=0.9909;RSQ=0.9738;ERATE=0.0008;THETA=0.0005;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 25989699 . A AAAAT 1465 PASS INDEL;BAVGPOST=0.990;BRSQ=0.763;LDAF=0.0277;AVGPOST=0.9885;RSQ=0.8430;ERATE=0.0016;THETA=0.0007;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 25989951 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6845;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25989982 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6555;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25989984 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25990050 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0020;AVGPOST=0.9989;RSQ=0.8072;ERATE=0.0004;THETA=0.0027;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25990132 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0043;AVGPOST=0.9992;RSQ=0.9188;ERATE=0.0004;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25990149 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2219;AVGPOST=0.9984;RSQ=0.9970;ERATE=0.0004;THETA=0.0006;AC=486;AN=2184 GT:DS:GL:BD 0.22252747 0 1 25990178 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7809;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25990333 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.695;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5720;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25990409 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25990430 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0030;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25990449 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25990692 . TG T 102 PASS INDEL;BAVGPOST=0.999;BRSQ=0.719;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6809;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25990824 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.870;LDAF=0.0126;AVGPOST=0.9959;RSQ=0.8796;ERATE=0.0006;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 25990827 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0217;AVGPOST=0.9995;RSQ=0.9926;ERATE=0.0003;THETA=0.0013;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 25990845 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0221;AVGPOST=0.9987;RSQ=0.9803;ERATE=0.0003;THETA=0.0009;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 25990930 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25991074 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.7136;ERATE=0.0008;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25991119 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0022;AVGPOST=0.9990;RSQ=0.8075;ERATE=0.0006;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25991185 . ACT A 319 PASS INDEL;BAVGPOST=0.999;BRSQ=0.803;LDAF=0.0033;AVGPOST=0.9966;RSQ=0.6505;ERATE=0.0004;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25991269 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0028;AVGPOST=0.9984;RSQ=0.7824;ERATE=0.0008;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25991348 . T TC 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4924;ERATE=0.0005;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25991356 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5279;AVGPOST=0.9983;RSQ=0.9975;ERATE=0.0004;THETA=0.0004;AC=1153;AN=2184 GT:DS:GL:BD 0.52793038 1 1 25991754 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25991775 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4603;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25991818 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0021;AVGPOST=0.9983;RSQ=0.6809;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25991898 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2753;AVGPOST=0.9973;RSQ=0.9950;ERATE=0.0007;THETA=0.0007;AC=601;AN=2184 GT:DS:GL:BD 0.27518314 0 1 25991968 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7457;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25992023 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7293;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25992160 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0091;AVGPOST=0.9994;RSQ=0.9755;ERATE=0.0003;THETA=0.0007;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 25992314 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.6056;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25992464 . AAAGATAATT A 704 PASS INDEL;BAVGPOST=0.999;BRSQ=0.749;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.6883;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25992573 . G GA 2123 PASS INDEL;BAVGPOST=0.992;BRSQ=0.873;LDAF=0.0360;AVGPOST=0.9790;RSQ=0.7844;ERATE=0.0047;THETA=0.0005;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 25992675 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7993;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25992695 . A AC 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7762;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25992721 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0215;AVGPOST=0.9999;RSQ=0.9972;ERATE=0.0003;THETA=0.0004;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 25992726 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.2398;AVGPOST=0.9984;RSQ=0.9963;ERATE=0.0004;THETA=0.0032;AC=523;AN=2184 GT:DS:GL:BD 0.23946886 0 1 25992736 . AC A 59 PASS INDEL;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0020;AVGPOST=0.9982;RSQ=0.6292;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25992759 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25992778 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0215;AVGPOST=0.9999;RSQ=0.9981;ERATE=0.0003;THETA=0.0006;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 25992823 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0217;AVGPOST=0.9995;RSQ=0.9913;ERATE=0.0003;THETA=0.0009;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 25992935 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0717;AVGPOST=0.9993;RSQ=0.9960;ERATE=0.0004;THETA=0.0009;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 25992944 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2761;AVGPOST=0.9991;RSQ=0.9984;ERATE=0.0003;THETA=0.0004;AC=602;AN=2184 GT:DS:GL:BD 0.27564102 0 1 25993117 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.992;LDAF=0.5285;AVGPOST=0.9944;RSQ=0.9929;ERATE=0.0013;THETA=0.0006;AC=1153;AN=2184 GT:DS:GL:BD 0.52793038 1 1 25993195 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0046;AVGPOST=0.9987;RSQ=0.8764;ERATE=0.0007;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25993219 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6378;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25993282 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.696;LDAF=0.0028;AVGPOST=0.9991;RSQ=0.8435;ERATE=0.0005;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25993307 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0018;AVGPOST=0.9987;RSQ=0.6696;ERATE=0.0006;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25993399 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0023;AVGPOST=0.9985;RSQ=0.7199;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25993419 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0029;AVGPOST=0.9984;RSQ=0.7674;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25993449 rs11290438 AG A 64853 PASS INDEL;BAVGPOST=0.991;BRSQ=0.502;LDAF=0.9875;AVGPOST=0.9853;RSQ=0.5278;ERATE=0.0042;THETA=0.0008;AC=2168;AN=2184 GT:DS:GL:BD 0.99267399 1 1 25993451 . GC G 16885 PASS INDEL;BAVGPOST=0.951;BRSQ=0.507;LDAF=0.9086;AVGPOST=0.8910;RSQ=0.4582;ERATE=0.0221;THETA=0.0004;AC=2073;AN=2184 GT:DS:GL:BD 0.94917583 1 1 25993590 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25993592 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0028;AVGPOST=0.9995;RSQ=0.9195;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25993687 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0046;AVGPOST=0.9991;RSQ=0.9247;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 25993749 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.663;LDAF=0.0031;AVGPOST=0.9951;RSQ=0.3415;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25994002 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.661;LDAF=0.0468;AVGPOST=0.9569;RSQ=0.6460;ERATE=0.0079;THETA=0.0007;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 25994407 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25994546 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7523;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25994684 . ATATT A 427 PASS INDEL;BAVGPOST=0.999;BRSQ=0.772;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.5830;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25994688 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25994695 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6585;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25994756 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25994783 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.730;LDAF=0.0017;AVGPOST=0.9982;RSQ=0.5306;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25994966 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4765;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25994987 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.6328;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25995030 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.811;LDAF=0.0036;AVGPOST=0.9988;RSQ=0.8546;ERATE=0.0005;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 25995038 rs71577788 T TTTTC 25935 PASS INDEL;BAVGPOST=0.940;BRSQ=0.919;LDAF=0.5005;AVGPOST=0.9582;RSQ=0.9524;ERATE=0.0005;THETA=0.0006;AC=1111;AN=2184 GT:DS:GL:BD 0.50869966 1 1 25995051 . T TTTC 21480 PASS INDEL;BAVGPOST=0.906;BRSQ=0.852;LDAF=0.4396;AVGPOST=0.8937;RSQ=0.8514;ERATE=0.0209;THETA=0.0003;AC=977;AN=2184 GT:DS:GL:BD 0.44734433 0 1 25995053 . T TC 11182 PASS INDEL;BAVGPOST=0.897;BRSQ=0.826;LDAF=0.3991;AVGPOST=0.8635;RSQ=0.7899;ERATE=0.0311;THETA=0.0006;AC=895;AN=2184 GT:DS:GL:BD 0.40979853 0 1 25995075 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0219;AVGPOST=0.9990;RSQ=0.9808;ERATE=0.0004;THETA=0.0016;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 25995109 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.627;LDAF=0.0029;AVGPOST=0.9957;RSQ=0.4420;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25995181 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.577;LDAF=0.0075;AVGPOST=0.9916;RSQ=0.5564;ERATE=0.0010;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 25995293 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0236;AVGPOST=0.9974;RSQ=0.9540;ERATE=0.0009;THETA=0.0003;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 25995399 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.2783;AVGPOST=0.9936;RSQ=0.9878;ERATE=0.0010;THETA=0.0007;AC=604;AN=2184 GT:DS:GL:BD 0.27655679 0 1 25995440 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6200;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25995552 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.730;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6707;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25995662 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.7037;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25995753 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0216;AVGPOST=0.9995;RSQ=0.9900;ERATE=0.0004;THETA=0.0010;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 25995936 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2471;AVGPOST=0.9983;RSQ=0.9971;ERATE=0.0005;THETA=0.0013;AC=542;AN=2184 GT:DS:GL:BD 0.24816850 0 1 25995943 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7459;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25995991 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0079;AVGPOST=0.9994;RSQ=0.9636;ERATE=0.0003;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 25996023 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6223;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25996074 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7177;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25996089 . CT C 236 PASS INDEL;BAVGPOST=0.934;BRSQ=0.172;LDAF=0.1366;AVGPOST=0.7863;RSQ=0.2683;ERATE=0.0065;THETA=0.0004;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 25996095 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0325;AVGPOST=0.9962;RSQ=0.9599;ERATE=0.0006;THETA=0.0007;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 25996095 . T TA 107 PASS INDEL;BAVGPOST=0.983;BRSQ=0.566;LDAF=0.0229;AVGPOST=0.9758;RSQ=0.5752;ERATE=0.0049;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 25996261 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0216;AVGPOST=0.9998;RSQ=0.9963;ERATE=0.0003;THETA=0.0005;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 25996343 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9230;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 25996430 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7265;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25996448 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9524;ERATE=0.0005;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 25996484 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0295;AVGPOST=0.9994;RSQ=0.9913;ERATE=0.0003;THETA=0.0007;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 25996503 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25996990 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.954;LDAF=0.0170;AVGPOST=0.9986;RSQ=0.9742;ERATE=0.0003;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 25997067 . A AG 97 PASS INDEL;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0022;AVGPOST=0.9967;RSQ=0.4751;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25997142 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1451;AVGPOST=0.9977;RSQ=0.9938;ERATE=0.0003;THETA=0.0007;AC=318;AN=2184 GT:DS:GL:BD 0.14560440 0 1 25997170 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7891;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25997219 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0215;AVGPOST=0.9999;RSQ=0.9981;ERATE=0.0003;THETA=0.0008;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 25997347 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5970;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25997374 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6726;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25997453 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.679;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7946;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25997607 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0034;AVGPOST=0.9984;RSQ=0.8143;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25997629 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6710;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25997776 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7604;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25997816 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7359;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25997829 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6859;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25997868 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1677;AVGPOST=0.9993;RSQ=0.9980;ERATE=0.0003;THETA=0.0005;AC=367;AN=2184 GT:DS:GL:BD 0.16804029 0 1 25997991 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25997996 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0022;AVGPOST=0.9986;RSQ=0.7918;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25998059 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8725;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25998086 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7049;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 25998135 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9322;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25998177 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7107;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25998272 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.790;LDAF=0.0017;AVGPOST=0.9997;RSQ=0.9191;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 25998341 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9205;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 25998364 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0070;AVGPOST=0.9986;RSQ=0.9154;ERATE=0.0007;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 25998397 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7290;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25998420 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25998475 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25998696 . AAG A 465 PASS INDEL;BAVGPOST=0.971;BRSQ=0.680;LDAF=0.0666;AVGPOST=0.9432;RSQ=0.6087;ERATE=0.0318;THETA=0.0009;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 25998706 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25998708 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25998758 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.9032;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25998772 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1460;AVGPOST=0.9990;RSQ=0.9969;ERATE=0.0004;THETA=0.0010;AC=320;AN=2184 GT:DS:GL:BD 0.14652015 0 1 25998778 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25998779 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0046;AVGPOST=0.9989;RSQ=0.9020;ERATE=0.0007;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 25998903 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0756;AVGPOST=0.9996;RSQ=0.9978;ERATE=0.0004;THETA=0.0013;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 25999057 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2223;AVGPOST=0.9985;RSQ=0.9971;ERATE=0.0004;THETA=0.0008;AC=487;AN=2184 GT:DS:GL:BD 0.22298534 0 1 25999117 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25999326 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6343;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25999517 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5288;AVGPOST=0.9944;RSQ=0.9932;ERATE=0.0007;THETA=0.0007;AC=1155;AN=2184 GT:DS:GL:BD 0.52884614 1 1 25999677 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.3747;ERATE=0.0006;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25999740 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.761;LDAF=0.0101;AVGPOST=0.9969;RSQ=0.8881;ERATE=0.0004;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 25999818 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.709;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8556;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 25999910 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 25999975 . TA T 4657 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0215;AVGPOST=0.9996;RSQ=0.9929;ERATE=0.0004;THETA=0.0012;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 26000060 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26000175 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0004;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26000339 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8176;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26000399 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26000547 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8625;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26000548 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26000622 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6441;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26000846 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0215;AVGPOST=0.9999;RSQ=0.9972;ERATE=0.0003;THETA=0.0016;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 26000849 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6620;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26000952 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5323;AVGPOST=0.9951;RSQ=0.9940;ERATE=0.0007;THETA=0.0052;AC=1162;AN=2184 GT:DS:GL:BD 0.53205127 1 1 26001096 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6338;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26001115 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7682;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26001264 rs5773131 T TG 114545 PASS INDEL;BAVGPOST=1.000;BRSQ=0;LDAF=0.9992;AVGPOST=0.9985;RSQ=0.2398;ERATE=0.0003;THETA=0.0005;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 26001323 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7102;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26001529 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.7654;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26001782 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6218;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26001937 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.977;LDAF=0.1401;AVGPOST=0.9912;RSQ=0.9748;ERATE=0.0005;THETA=0.0015;AC=306;AN=2184 GT:DS:GL:BD 0.14010990 0 1 26001950 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.751;LDAF=0.9758;AVGPOST=0.9851;RSQ=0.7532;ERATE=0.0013;THETA=0.0018;AC=2141;AN=2184 GT:DS:GL:BD 0.98031133 1 1 26002000 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.789;LDAF=0.0024;AVGPOST=0.9983;RSQ=0.6777;ERATE=0.0007;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26002045 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.988;LDAF=0.1450;AVGPOST=0.9950;RSQ=0.9864;ERATE=0.0005;THETA=0.0043;AC=316;AN=2184 GT:DS:GL:BD 0.14468865 0 1 26002078 . G GGGC 2852 PASS INDEL;BAVGPOST=0.983;BRSQ=0.831;LDAF=0.0467;AVGPOST=0.9572;RSQ=0.6424;ERATE=0.0055;THETA=0.0010;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 26002167 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0024;AVGPOST=0.9984;RSQ=0.7431;ERATE=0.0004;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26002181 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.880;LDAF=0.0206;AVGPOST=0.9966;RSQ=0.9413;ERATE=0.0004;THETA=0.0053;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 26002272 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7117;ERATE=0.0004;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26002277 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.460;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5750;ERATE=0.0003;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26002280 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0034;AVGPOST=0.9993;RSQ=0.9057;ERATE=0.0004;THETA=0.0045;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26002295 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7941;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26002399 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5620;ERATE=0.0004;THETA=0.0095;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26002527 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26002535 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0055;AVGPOST=0.9990;RSQ=0.9198;ERATE=0.0004;THETA=0.0010;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26002543 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0057;AVGPOST=0.9986;RSQ=0.9037;ERATE=0.0004;THETA=0.0070;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26002584 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5261;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26002585 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.961;LDAF=0.4115;AVGPOST=0.9737;RSQ=0.9615;ERATE=0.0005;THETA=0.0101;AC=897;AN=2184 GT:DS:GL:BD 0.41071430 0 1 26002742 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6199;ERATE=0.0003;THETA=0.0103;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26002758 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6636;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26002775 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0004;THETA=0.0064;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26002784 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0230;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26002841 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.945;LDAF=0.0153;AVGPOST=0.9981;RSQ=0.9569;ERATE=0.0004;THETA=0.0103;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 26002842 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.896;LDAF=0.0133;AVGPOST=0.9960;RSQ=0.8815;ERATE=0.0005;THETA=0.0026;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26002861 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.775;LDAF=0.0059;AVGPOST=0.9982;RSQ=0.8757;ERATE=0.0004;THETA=0.0036;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26003050 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.952;LDAF=0.0177;AVGPOST=0.9982;RSQ=0.9621;ERATE=0.0004;THETA=0.0109;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 26003101 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.984;LDAF=0.0922;AVGPOST=0.9933;RSQ=0.9731;ERATE=0.0006;THETA=0.0069;AC=200;AN=2184 GT:DS:GL:BD 0.09157509 0 1 26003102 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6008;ERATE=0.0004;THETA=0.0043;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26003110 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6629;ERATE=0.0004;THETA=0.0141;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26003167 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0116;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26003173 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0054;AVGPOST=0.9991;RSQ=0.9260;ERATE=0.0006;THETA=0.0064;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26003304 . A AT 330 PASS INDEL;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8393;ERATE=0.0003;THETA=0.0082;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26003320 . GA G 30 PASS INDEL;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0016;AVGPOST=0.9983;RSQ=0.5810;ERATE=0.0005;THETA=0.0088;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26003339 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.789;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7715;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26003578 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7137;ERATE=0.0003;THETA=0.0249;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26003724 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.615;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5444;ERATE=0.0004;THETA=0.0051;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26003756 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.953;LDAF=0.1556;AVGPOST=0.9853;RSQ=0.9610;ERATE=0.0021;THETA=0.0070;AC=335;AN=2184 GT:DS:GL:BD 0.15338828 0 1 26003802 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0115;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26003922 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.656;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5316;ERATE=0.0005;THETA=0.0198;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26003922 . C CAN 3026 PASS INDEL;BAVGPOST=0.949;BRSQ=0.759;LDAF=0.1290;AVGPOST=0.9345;RSQ=0.7593;ERATE=0.0285;THETA=0.0042;AC=243;AN=2184 GT:DS:GL:BD 0.11126374 0 1 26003924 . TAC T 349 PASS INDEL;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0043;AVGPOST=0.9958;RSQ=0.6464;ERATE=0.0005;THETA=0.0121;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26003951 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8791;ERATE=0.0003;THETA=0.0212;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26003952 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0087;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26003996 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7343;ERATE=0.0003;THETA=0.0062;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26004022 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0119;AVGPOST=0.9990;RSQ=0.9641;ERATE=0.0004;THETA=0.0130;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26004027 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0022;AVGPOST=0.9990;RSQ=0.8227;ERATE=0.0005;THETA=0.0215;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26004099 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.959;LDAF=0.0253;AVGPOST=0.9967;RSQ=0.9501;ERATE=0.0003;THETA=0.0202;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 26004246 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0092;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26004305 . CCTT C 79 PASS INDEL;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0004;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26004481 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.960;LDAF=0.0824;AVGPOST=0.9927;RSQ=0.9681;ERATE=0.0006;THETA=0.0060;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 26004530 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.799;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9282;ERATE=0.0003;THETA=0.0032;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26004644 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0079;AVGPOST=0.9995;RSQ=0.9671;ERATE=0.0003;THETA=0.0024;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26004646 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.761;LDAF=0.0024;AVGPOST=0.9987;RSQ=0.7817;ERATE=0.0006;THETA=0.0036;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26004661 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6746;ERATE=0.0004;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26004755 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0004;THETA=0.0109;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26004817 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4979;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26005037 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0053;AVGPOST=0.9980;RSQ=0.8540;ERATE=0.0005;THETA=0.0024;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26005075 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0038;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26005093 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7838;ERATE=0.0003;THETA=0.0077;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26005360 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0226;AVGPOST=0.9989;RSQ=0.9815;ERATE=0.0004;THETA=0.0020;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 26005361 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8333;ERATE=0.0003;THETA=0.0034;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26005480 . A AAG 66 PASS INDEL;BAVGPOST=0.998;BRSQ=0.640;LDAF=0.0045;AVGPOST=0.9944;RSQ=0.4610;ERATE=0.0021;THETA=0.0044;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26005497 . CGA C 732 PASS INDEL;BAVGPOST=0.966;BRSQ=0.689;LDAF=0.0810;AVGPOST=0.9275;RSQ=0.5814;ERATE=0.0304;THETA=0.0050;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 26005539 rs72064453 CAA C 4686 PASS INDEL;BAVGPOST=0.998;BRSQ=0.957;LDAF=0.0225;AVGPOST=0.9962;RSQ=0.9351;ERATE=0.0005;THETA=0.0005;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 26005547 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26005705 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0087;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26005787 . AT A 110 PASS INDEL;BAVGPOST=0.999;BRSQ=0.780;LDAF=0.0021;AVGPOST=0.9983;RSQ=0.6662;ERATE=0.0006;THETA=0.0056;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26005915 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7494;ERATE=0.0008;THETA=0.0120;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26006135 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.942;LDAF=0.0139;AVGPOST=0.9957;RSQ=0.8812;ERATE=0.0015;THETA=0.0008;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26006232 . AAT A 155 PASS INDEL;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0047;AVGPOST=0.9979;RSQ=0.8302;ERATE=0.0005;THETA=0.0090;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26006236 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.977;LDAF=0.0787;AVGPOST=0.9893;RSQ=0.9474;ERATE=0.0007;THETA=0.0039;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 26006283 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.855;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26006356 rs71014381 C CT 14064 PASS INDEL;BAVGPOST=0.985;BRSQ=0.978;LDAF=0.2645;AVGPOST=0.9642;RSQ=0.9384;ERATE=0.0024;THETA=0.0041;AC=576;AN=2184 GT:DS:GL:BD 0.26373628 0 1 26006439 . AAAATAT A 1427 PASS INDEL;BAVGPOST=0.774;BRSQ=0.333;LDAF=0.2741;AVGPOST=0.6971;RSQ=0.3503;ERATE=0.0474;THETA=0.0014;AC=354;AN=2184 GT:DS:GL:BD 0.16208792 0 1 26006469 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.930;BRSQ=0.593;LDAF=0.1287;AVGPOST=0.8687;RSQ=0.5342;ERATE=0.0181;THETA=0.0007;AC=175;AN=2184 GT:DS:GL:BD 0.08012821 0 1 26006485 . CAT C 1549 PASS INDEL;BAVGPOST=0.996;BRSQ=0.926;LDAF=0.0275;AVGPOST=0.9899;RSQ=0.8689;ERATE=0.0015;THETA=0.0017;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 26006487 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.934;LDAF=0.0244;AVGPOST=0.9927;RSQ=0.8934;ERATE=0.0009;THETA=0.0010;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 26006584 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.5569;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26006593 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.743;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4551;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26006696 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.982;LDAF=0.0338;AVGPOST=0.9979;RSQ=0.9768;ERATE=0.0005;THETA=0.0087;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 26006875 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0249;AVGPOST=0.9957;RSQ=0.9323;ERATE=0.0004;THETA=0.0025;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 26006883 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7765;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26006897 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7575;ERATE=0.0003;THETA=0.0064;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26006908 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0004;THETA=0.0047;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26006984 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.676;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.5228;ERATE=0.0004;THETA=0.0047;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26007007 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6907;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26007093 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9253;ERATE=0.0003;THETA=0.0061;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26007126 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2628;AVGPOST=0.9979;RSQ=0.9961;ERATE=0.0004;THETA=0.0022;AC=576;AN=2184 GT:DS:GL:BD 0.26373628 0 1 26007369 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0072;AVGPOST=0.9988;RSQ=0.9362;ERATE=0.0004;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26007409 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6034;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26007440 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.656;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.5753;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26007441 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0222;AVGPOST=0.9974;RSQ=0.9503;ERATE=0.0004;THETA=0.0027;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 26007461 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8603;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26007477 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0235;AVGPOST=0.9993;RSQ=0.9913;ERATE=0.0003;THETA=0.0012;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 26007483 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4987;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26007568 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.989;LDAF=0.3978;AVGPOST=0.9893;RSQ=0.9841;ERATE=0.0005;THETA=0.0007;AC=866;AN=2184 GT:DS:GL:BD 0.39652014 0 1 26007590 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2610;AVGPOST=0.9977;RSQ=0.9957;ERATE=0.0005;THETA=0.0002;AC=570;AN=2184 GT:DS:GL:BD 0.26098901 0 1 26007624 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4793;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26007793 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0106;AVGPOST=0.9998;RSQ=0.9921;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26007806 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26007943 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0058;AVGPOST=0.9991;RSQ=0.9300;ERATE=0.0004;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26008115 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26008164 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.1587;AVGPOST=0.9941;RSQ=0.9834;ERATE=0.0006;THETA=0.0004;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 26008172 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0725;AVGPOST=0.9993;RSQ=0.9957;ERATE=0.0004;THETA=0.0011;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 26008228 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26008263 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.887;LDAF=0.0097;AVGPOST=0.9988;RSQ=0.9483;ERATE=0.0005;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26008335 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5869;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26008499 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26008504 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26008617 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0025;AVGPOST=0.9991;RSQ=0.8746;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26008635 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7290;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26008659 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.993;LDAF=0.3971;AVGPOST=0.9945;RSQ=0.9921;ERATE=0.0004;THETA=0.0003;AC=866;AN=2184 GT:DS:GL:BD 0.39652014 0 1 26008770 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0090;AVGPOST=0.9991;RSQ=0.9525;ERATE=0.0004;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26008913 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26009226 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0617;AVGPOST=0.9995;RSQ=0.9966;ERATE=0.0003;THETA=0.0005;AC=135;AN=2184 GT:DS:GL:BD 0.06181319 0 1 26009250 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.970;LDAF=0.9692;AVGPOST=0.9910;RSQ=0.8936;ERATE=0.0005;THETA=0.0007;AC=2120;AN=2184 GT:DS:GL:BD 0.97069597 1 1 26009251 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0148;AVGPOST=0.9989;RSQ=0.9717;ERATE=0.0003;THETA=0.0006;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 26009373 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6675;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26009459 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.966;LDAF=0.0411;AVGPOST=0.9966;RSQ=0.9714;ERATE=0.0004;THETA=0.0006;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 26009464 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0081;AVGPOST=0.9994;RSQ=0.9721;ERATE=0.0003;THETA=0.0013;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26009513 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.0682;AVGPOST=0.9994;RSQ=0.9955;ERATE=0.0003;THETA=0.0004;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 26009618 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.689;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8541;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26009647 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0060;AVGPOST=0.9987;RSQ=0.9026;ERATE=0.0003;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26009712 . C CA 246 PASS INDEL;BAVGPOST=0.999;BRSQ=0.829;LDAF=0.0040;AVGPOST=0.9974;RSQ=0.7090;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26009715 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0042;AVGPOST=0.9996;RSQ=0.9567;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26009732 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9921;ERATE=0.0003;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26009737 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26009835 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26009842 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0614;AVGPOST=0.9995;RSQ=0.9966;ERATE=0.0003;THETA=0.0010;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 26009858 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.934;LDAF=0.0119;AVGPOST=0.9990;RSQ=0.9659;ERATE=0.0003;THETA=0.0028;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26009868 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0014;AVGPOST=0.9994;RSQ=0.8128;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26009907 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26010144 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0077;AVGPOST=0.9984;RSQ=0.9105;ERATE=0.0005;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26010184 rs34909480 GC G 2435 PASS INDEL;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0203;AVGPOST=0.9970;RSQ=0.9390;ERATE=0.0004;THETA=0.0006;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 26010211 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.887;LDAF=0.0215;AVGPOST=0.9963;RSQ=0.9277;ERATE=0.0008;THETA=0.0049;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 26010338 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.976;LDAF=0.2869;AVGPOST=0.9777;RSQ=0.9687;ERATE=0.0158;THETA=0.0007;AC=621;AN=2184 GT:DS:GL:BD 0.28434065 0 1 26010413 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8571;ERATE=0.0009;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26010458 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26010522 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.774;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7764;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26010540 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5650;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26010579 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.918;LDAF=0.0277;AVGPOST=0.9961;RSQ=0.9451;ERATE=0.0004;THETA=0.0005;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 26010611 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2646;AVGPOST=0.9978;RSQ=0.9959;ERATE=0.0005;THETA=0.0008;AC=577;AN=2184 GT:DS:GL:BD 0.26419413 0 1 26010672 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.687;LDAF=0.0022;AVGPOST=0.9976;RSQ=0.5406;ERATE=0.0008;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26010773 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9419;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26010871 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6705;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26010884 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.879;LDAF=0.0067;AVGPOST=0.9975;RSQ=0.8433;ERATE=0.0005;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26010930 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2624;AVGPOST=0.9976;RSQ=0.9957;ERATE=0.0005;THETA=0.0005;AC=575;AN=2184 GT:DS:GL:BD 0.26327839 0 1 26011024 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5581;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26011103 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2635;AVGPOST=0.9992;RSQ=0.9984;ERATE=0.0004;THETA=0.0002;AC=577;AN=2184 GT:DS:GL:BD 0.26419413 0 1 26011124 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2639;AVGPOST=0.9981;RSQ=0.9967;ERATE=0.0006;THETA=0.0009;AC=577;AN=2184 GT:DS:GL:BD 0.26419413 0 1 26011181 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.670;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5597;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26011238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9618;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26011253 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5409;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26011318 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2637;AVGPOST=0.9999;RSQ=0.9997;ERATE=0.0003;THETA=0.0010;AC=577;AN=2184 GT:DS:GL:BD 0.26419413 0 1 26011342 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6236;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26011363 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2638;AVGPOST=0.9995;RSQ=0.9989;ERATE=0.0004;THETA=0.0009;AC=577;AN=2184 GT:DS:GL:BD 0.26419413 0 1 26011383 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0745;AVGPOST=0.9989;RSQ=0.9942;ERATE=0.0004;THETA=0.0004;AC=162;AN=2184 GT:DS:GL:BD 0.07417583 0 1 26011456 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0082;AVGPOST=0.9997;RSQ=0.9845;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26011590 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0067;AVGPOST=0.9993;RSQ=0.9607;ERATE=0.0004;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26011596 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26011687 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6651;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26011858 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.982;LDAF=0.0809;AVGPOST=0.9989;RSQ=0.9947;ERATE=0.0003;THETA=0.0005;AC=177;AN=2184 GT:DS:GL:BD 0.08104396 0 1 26012120 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0063;AVGPOST=0.9988;RSQ=0.9247;ERATE=0.0004;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26012130 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6794;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26012284 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26012290 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6746;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26012517 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0731;AVGPOST=0.9995;RSQ=0.9968;ERATE=0.0003;THETA=0.0006;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 26012543 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6951;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26012701 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26012759 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9609;ERATE=0.0003;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26012989 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26013069 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0082;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26013074 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26013199 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26013252 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0694;AVGPOST=0.9995;RSQ=0.9971;ERATE=0.0003;THETA=0.0005;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 26013489 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2650;AVGPOST=0.9984;RSQ=0.9971;ERATE=0.0005;THETA=0.0005;AC=580;AN=2184 GT:DS:GL:BD 0.26556778 0 1 26013605 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.829;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8382;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26013928 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0077;AVGPOST=0.9974;RSQ=0.8625;ERATE=0.0005;THETA=0.0026;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26013937 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.5592;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26013995 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7109;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26014024 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0695;AVGPOST=0.9989;RSQ=0.9932;ERATE=0.0004;THETA=0.0016;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 26014162 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8519;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26014286 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0072;AVGPOST=0.9988;RSQ=0.9259;ERATE=0.0004;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26014409 . TC T 989 PASS INDEL;BAVGPOST=0.978;BRSQ=0.670;LDAF=0.0384;AVGPOST=0.9717;RSQ=0.7078;ERATE=0.0069;THETA=0.0010;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 26014410 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1420;AVGPOST=0.9981;RSQ=0.9949;ERATE=0.0009;THETA=0.0005;AC=310;AN=2184 GT:DS:GL:BD 0.14194140 0 1 26014503 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0085;AVGPOST=0.9995;RSQ=0.9714;ERATE=0.0004;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26014528 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7905;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26014553 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0073;AVGPOST=0.9990;RSQ=0.9507;ERATE=0.0004;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26014564 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5994;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26014660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26014812 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0160;AVGPOST=0.9988;RSQ=0.9722;ERATE=0.0004;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 26014908 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26014940 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.8802;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26015299 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9607;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26015367 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.8788;AVGPOST=0.9956;RSQ=0.9846;ERATE=0.0004;THETA=0.0007;AC=1920;AN=2184 GT:DS:GL:BD 0.87912089 1 1 26015378 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0056;AVGPOST=0.9992;RSQ=0.9322;ERATE=0.0003;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26015436 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.878;LDAF=0.0306;AVGPOST=0.9957;RSQ=0.9362;ERATE=0.0006;THETA=0.0011;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 26015526 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0029;AVGPOST=0.9986;RSQ=0.8301;ERATE=0.0004;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26015537 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0081;AVGPOST=0.9993;RSQ=0.9677;ERATE=0.0003;THETA=0.0017;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26015568 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26015591 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26015599 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.933;LDAF=0.0116;AVGPOST=0.9985;RSQ=0.9482;ERATE=0.0005;THETA=0.0011;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26015613 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7683;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26015654 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26015659 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5037;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26015745 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5585;ERATE=0.0006;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26015768 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5836;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26015780 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2642;AVGPOST=0.9992;RSQ=0.9984;ERATE=0.0005;THETA=0.0005;AC=578;AN=2184 GT:DS:GL:BD 0.26465201 0 1 26015804 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.911;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8124;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26015805 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2639;AVGPOST=0.9984;RSQ=0.9969;ERATE=0.0004;THETA=0.0010;AC=578;AN=2184 GT:DS:GL:BD 0.26465201 0 1 26015837 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2639;AVGPOST=0.9990;RSQ=0.9981;ERATE=0.0003;THETA=0.0004;AC=578;AN=2184 GT:DS:GL:BD 0.26465201 0 1 26015862 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26015927 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0420;AVGPOST=0.9995;RSQ=0.9953;ERATE=0.0004;THETA=0.0006;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 26016005 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26016046 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2642;AVGPOST=0.9986;RSQ=0.9974;ERATE=0.0005;THETA=0.0016;AC=578;AN=2184 GT:DS:GL:BD 0.26465201 0 1 26016219 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.971;LDAF=0.0194;AVGPOST=0.9986;RSQ=0.9721;ERATE=0.0003;THETA=0.0010;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 26016220 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2760;AVGPOST=0.9936;RSQ=0.9896;ERATE=0.0008;THETA=0.0053;AC=602;AN=2184 GT:DS:GL:BD 0.27564102 0 1 26016266 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.800;LDAF=0.0016;AVGPOST=0.9980;RSQ=0.5443;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26016270 . TG T 889 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0103;AVGPOST=0.9957;RSQ=0.8380;ERATE=0.0006;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26016372 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.797;LDAF=0.0141;AVGPOST=0.9913;RSQ=0.7394;ERATE=0.0007;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26016379 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6335;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26016543 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0089;AVGPOST=0.9977;RSQ=0.9069;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26016567 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26016670 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6761;ERATE=0.0006;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26016753 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0085;AVGPOST=0.9994;RSQ=0.9680;ERATE=0.0003;THETA=0.0012;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26017000 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.850;LDAF=0.0046;AVGPOST=0.9977;RSQ=0.8216;ERATE=0.0007;THETA=0.0018;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26017209 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.752;LDAF=0.0061;AVGPOST=0.9922;RSQ=0.5305;ERATE=0.0008;THETA=0.0012;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26017239 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4651;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26017316 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9288;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26017382 . TCAGGGGAGG T 181 PASS INDEL;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0028;AVGPOST=0.9980;RSQ=0.7303;ERATE=0.0006;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26017444 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0060;AVGPOST=0.9976;RSQ=0.8528;ERATE=0.0004;THETA=0.0009;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26017677 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5467;ERATE=0.0005;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26017867 . ATGC A 30 PASS INDEL;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6732;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26017891 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8136;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26017894 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0028;AVGPOST=0.9981;RSQ=0.7669;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26017896 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0461;AVGPOST=0.9993;RSQ=0.9938;ERATE=0.0003;THETA=0.0009;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 26018037 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9297;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26018058 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0052;AVGPOST=0.9996;RSQ=0.9627;ERATE=0.0004;THETA=0.0039;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26018165 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0035;AVGPOST=0.9976;RSQ=0.7332;ERATE=0.0005;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26018243 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0716;AVGPOST=0.9991;RSQ=0.9952;ERATE=0.0004;THETA=0.0008;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 26018378 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26018387 . T TTGAAAG 2460 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0087;AVGPOST=0.9989;RSQ=0.9395;ERATE=0.0005;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26018524 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0102;AVGPOST=0.9989;RSQ=0.9542;ERATE=0.0007;THETA=0.0010;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26018655 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6582;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26018843 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6948;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26018858 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0083;AVGPOST=0.9998;RSQ=0.9867;ERATE=0.0003;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26018906 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26018909 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.670;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7301;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26018995 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0055;AVGPOST=0.9989;RSQ=0.9114;ERATE=0.0005;THETA=0.0017;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26019136 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0004;AVGPOST=0.9993;RSQ=0.4074;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26019165 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.5462;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26019460 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26019524 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6441;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26019814 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0020;AVGPOST=0.9972;RSQ=0.5662;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26019898 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.783;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7189;ERATE=0.0003;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26019908 . G GT 331 PASS INDEL;BAVGPOST=0.997;BRSQ=0.873;LDAF=0.0046;AVGPOST=0.9990;RSQ=0.9211;ERATE=0.0004;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26019910 . CAG C 406 PASS INDEL;BAVGPOST=0.997;BRSQ=0.871;LDAF=0.0051;AVGPOST=0.9980;RSQ=0.8537;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26019983 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.984;LDAF=0.2764;AVGPOST=0.9851;RSQ=0.9756;ERATE=0.0053;THETA=0.0005;AC=600;AN=2184 GT:DS:GL:BD 0.27472529 0 1 26019992 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.8989;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26020083 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.8408;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26020123 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0085;AVGPOST=0.9994;RSQ=0.9691;ERATE=0.0004;THETA=0.0008;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26020159 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.939;LDAF=0.0040;AVGPOST=0.9992;RSQ=0.9415;ERATE=0.0004;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26020167 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9865;ERATE=0.0003;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26020225 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26020312 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7668;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26020337 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0159;AVGPOST=0.9992;RSQ=0.9795;ERATE=0.0004;THETA=0.0006;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 26020341 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.695;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.3863;ERATE=0.0008;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26020349 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0253;AVGPOST=0.9992;RSQ=0.9861;ERATE=0.0005;THETA=0.0005;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 26020361 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0034;AVGPOST=0.9958;RSQ=0.6017;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26020409 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0082;AVGPOST=0.9999;RSQ=0.9946;ERATE=0.0003;THETA=0.0009;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26020428 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0067;AVGPOST=0.9994;RSQ=0.9638;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26020475 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6790;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26020513 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26020536 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0082;AVGPOST=0.9997;RSQ=0.9816;ERATE=0.0004;THETA=0.0008;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26020537 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0082;AVGPOST=0.9999;RSQ=0.9927;ERATE=0.0003;THETA=0.0010;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26020583 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0073;AVGPOST=0.9980;RSQ=0.8856;ERATE=0.0004;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26020613 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6490;ERATE=0.0005;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26020680 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6809;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26020702 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0021;AVGPOST=0.9987;RSQ=0.7795;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26020749 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0208;AVGPOST=0.9995;RSQ=0.9902;ERATE=0.0003;THETA=0.0008;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 26020784 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.2736;AVGPOST=0.9979;RSQ=0.9970;ERATE=0.0004;THETA=0.0006;AC=597;AN=2184 GT:DS:GL:BD 0.27335164 0 1 26020884 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0674;AVGPOST=0.9992;RSQ=0.9954;ERATE=0.0004;THETA=0.0004;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 26020990 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26021042 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26021116 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0084;AVGPOST=0.9997;RSQ=0.9858;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26021199 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6571;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26021206 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.844;LDAF=0.0049;AVGPOST=0.9976;RSQ=0.7776;ERATE=0.0006;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26021300 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0111;AVGPOST=0.9988;RSQ=0.9503;ERATE=0.0005;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26021449 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0108;AVGPOST=0.9995;RSQ=0.9801;ERATE=0.0003;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26021555 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9600;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26021671 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26021708 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4978;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26021752 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7494;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26021816 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1290;AVGPOST=0.9989;RSQ=0.9957;ERATE=0.0003;THETA=0.0004;AC=281;AN=2184 GT:DS:GL:BD 0.12866300 0 1 26021822 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0084;AVGPOST=0.9997;RSQ=0.9816;ERATE=0.0003;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26021933 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5394;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26021934 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6398;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26022087 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8141;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26022118 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0088;AVGPOST=0.9997;RSQ=0.9833;ERATE=0.0004;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26022185 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6114;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26022316 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0357;AVGPOST=0.9979;RSQ=0.9756;ERATE=0.0005;THETA=0.0018;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 26022323 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4956;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26022450 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0006;AVGPOST=0.9992;RSQ=0.5012;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26022504 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0016;AVGPOST=0.9976;RSQ=0.4830;ERATE=0.0007;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26022599 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.582;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5412;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26022616 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7250;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26022660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6847;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26022819 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0140;AVGPOST=0.9986;RSQ=0.9684;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 26022820 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0009;AVGPOST=0.9987;RSQ=0.3586;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26022853 . A AG 2108 PASS INDEL;BAVGPOST=0.994;BRSQ=0.971;LDAF=0.1009;AVGPOST=0.9943;RSQ=0.9775;ERATE=0.0005;THETA=0.0012;AC=225;AN=2184 GT:DS:GL:BD 0.10302198 0 1 26022855 . G GC 13000 PASS INDEL;BAVGPOST=0.994;BRSQ=0.972;LDAF=0.1014;AVGPOST=0.9963;RSQ=0.9855;ERATE=0.0003;THETA=0.0005;AC=225;AN=2184 GT:DS:GL:BD 0.10302198 0 1 26022872 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8163;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26022967 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2735;AVGPOST=0.9986;RSQ=0.9973;ERATE=0.0006;THETA=0.0005;AC=598;AN=2184 GT:DS:GL:BD 0.27380952 0 1 26022995 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26023077 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0695;AVGPOST=0.9996;RSQ=0.9976;ERATE=0.0003;THETA=0.0011;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 26023093 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9842;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26023102 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8415;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26023177 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.972;LDAF=0.0047;AVGPOST=0.9989;RSQ=0.9235;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26023298 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8990;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26023349 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2655;AVGPOST=0.9985;RSQ=0.9972;ERATE=0.0006;THETA=0.0007;AC=580;AN=2184 GT:DS:GL:BD 0.26556778 0 1 26023544 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9651;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26023586 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0105;AVGPOST=0.9996;RSQ=0.9850;ERATE=0.0003;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26023847 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26023882 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8319;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26024045 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26024108 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0060;AVGPOST=0.9985;RSQ=0.8992;ERATE=0.0005;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26024116 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0206;AVGPOST=0.9991;RSQ=0.9831;ERATE=0.0003;THETA=0.0005;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 26024225 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1027;AVGPOST=0.9993;RSQ=0.9972;ERATE=0.0003;THETA=0.0005;AC=225;AN=2184 GT:DS:GL:BD 0.10302198 0 1 26024238 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0229;AVGPOST=0.9998;RSQ=0.9963;ERATE=0.0003;THETA=0.0006;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 26024318 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9007;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26024556 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0102;AVGPOST=0.9997;RSQ=0.9888;ERATE=0.0003;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26024640 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0082;AVGPOST=0.9992;RSQ=0.9671;ERATE=0.0004;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26024929 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5450;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26024937 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0222;AVGPOST=0.9995;RSQ=0.9889;ERATE=0.0003;THETA=0.0007;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 26024990 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0038;AVGPOST=0.9989;RSQ=0.8959;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26025037 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0083;AVGPOST=0.9995;RSQ=0.9746;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26025078 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.843;LDAF=0.0044;AVGPOST=0.9978;RSQ=0.8085;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26025081 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26025550 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26025562 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.733;LDAF=0.0311;AVGPOST=0.9802;RSQ=0.7507;ERATE=0.0010;THETA=0.0004;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 26025565 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.648;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.3779;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26025617 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1034;AVGPOST=0.9995;RSQ=0.9976;ERATE=0.0004;THETA=0.0007;AC=226;AN=2184 GT:DS:GL:BD 0.10347985 0 1 26025748 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.599;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5654;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26025792 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.679;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4659;ERATE=0.0006;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26025807 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0445;AVGPOST=0.9981;RSQ=0.9825;ERATE=0.0006;THETA=0.0023;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 26025807 . A AG 1072 PASS INDEL;BAVGPOST=0.993;BRSQ=0.932;LDAF=0.0501;AVGPOST=0.9973;RSQ=0.9792;ERATE=0.0005;THETA=0.0005;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 26025810 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.974;LDAF=0.0841;AVGPOST=0.9920;RSQ=0.9595;ERATE=0.0028;THETA=0.0007;AC=179;AN=2184 GT:DS:GL:BD 0.08195971 0 1 26025816 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.966;LDAF=0.1090;AVGPOST=0.9893;RSQ=0.9573;ERATE=0.0024;THETA=0.0010;AC=232;AN=2184 GT:DS:GL:BD 0.10622711 0 1 26025886 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8495;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26025912 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7307;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26025916 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9999;AVGPOST=0.9999;RSQ=0.0499;ERATE=0.0003;THETA=0.0008;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 26025980 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8333;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26026279 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1671;AVGPOST=0.9887;RSQ=0.9685;ERATE=0.0006;THETA=0.0004;AC=363;AN=2184 GT:DS:GL:BD 0.16620879 0 1 26026306 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.983;LDAF=0.1627;AVGPOST=0.9872;RSQ=0.9637;ERATE=0.0008;THETA=0.0004;AC=355;AN=2184 GT:DS:GL:BD 0.16254579 0 1 26026363 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.759;LDAF=0.0036;AVGPOST=0.9974;RSQ=0.7565;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26026561 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0323;AVGPOST=0.9964;RSQ=0.9597;ERATE=0.0003;THETA=0.0007;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 26026741 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26026746 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0057;AVGPOST=0.9986;RSQ=0.8882;ERATE=0.0003;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26026784 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0082;AVGPOST=0.9991;RSQ=0.9528;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26026924 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2737;AVGPOST=0.9996;RSQ=0.9992;ERATE=0.0004;THETA=0.0012;AC=599;AN=2184 GT:DS:GL:BD 0.27426741 0 1 26027012 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8259;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26027038 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0083;AVGPOST=0.9998;RSQ=0.9901;ERATE=0.0003;THETA=0.0008;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26027057 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6620;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26027064 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.899;LDAF=0.0379;AVGPOST=0.9942;RSQ=0.9374;ERATE=0.0006;THETA=0.0007;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 26027067 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8687;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26027112 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9880;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26027128 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26027202 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26027215 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7825;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26027227 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26027347 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.946;LDAF=0.0157;AVGPOST=0.9997;RSQ=0.9902;ERATE=0.0003;THETA=0.0008;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 26027367 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.925;LDAF=0.0089;AVGPOST=0.9960;RSQ=0.8190;ERATE=0.0007;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26027458 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2734;AVGPOST=0.9952;RSQ=0.9920;ERATE=0.0007;THETA=0.0005;AC=597;AN=2184 GT:DS:GL:BD 0.27335164 0 1 26027644 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.850;LDAF=0.0075;AVGPOST=0.9937;RSQ=0.6782;ERATE=0.0008;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26027793 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9231;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26027827 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5951;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26027838 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0156;AVGPOST=0.9999;RSQ=0.9971;ERATE=0.0003;THETA=0.0006;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 26027841 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0032;AVGPOST=0.9967;RSQ=0.5643;ERATE=0.0007;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26028055 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5858;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26028099 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5966;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26028120 . C CT 199 PASS INDEL;BAVGPOST=0.960;BRSQ=0.364;LDAF=0.1374;AVGPOST=0.8459;RSQ=0.5102;ERATE=0.0057;THETA=0.0005;AC=264;AN=2184 GT:DS:GL:BD 0.12087912 0 1 26028125 rs112541655 T TG 2720 PASS INDEL;BAVGPOST=0.998;BRSQ=0.945;LDAF=0.0175;AVGPOST=0.9971;RSQ=0.9314;ERATE=0.0011;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 26028193 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0044;AVGPOST=0.9993;RSQ=0.9359;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26028210 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6996;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26028216 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6656;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26028278 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.5865;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26028296 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0114;AVGPOST=0.9989;RSQ=0.9623;ERATE=0.0003;THETA=0.0007;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26028512 . CG C 248 PASS INDEL;BAVGPOST=0.998;BRSQ=0.733;LDAF=0.0043;AVGPOST=0.9969;RSQ=0.6804;ERATE=0.0006;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26028513 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2737;AVGPOST=0.9988;RSQ=0.9978;ERATE=0.0005;THETA=0.0005;AC=599;AN=2184 GT:DS:GL:BD 0.27426741 0 1 26028591 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0020;AVGPOST=0.9994;RSQ=0.8621;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26028612 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2039;AVGPOST=0.9981;RSQ=0.9966;ERATE=0.0004;THETA=0.0005;AC=448;AN=2184 GT:DS:GL:BD 0.20512821 0 1 26028654 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5713;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26028655 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0116;AVGPOST=0.9984;RSQ=0.9504;ERATE=0.0004;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26028772 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0007;AVGPOST=0.9990;RSQ=0.3758;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26028775 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0290;AVGPOST=0.9977;RSQ=0.9670;ERATE=0.0004;THETA=0.0004;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 26029062 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6464;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26029074 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6525;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26029173 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6440;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26029221 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26029421 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26029459 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9385;ERATE=0.0003;THETA=0.0025;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26029535 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26029540 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8261;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26029584 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26029770 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26029825 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6395;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26029888 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0820;AVGPOST=0.9995;RSQ=0.9975;ERATE=0.0003;THETA=0.0006;AC=179;AN=2184 GT:DS:GL:BD 0.08195971 0 1 26030065 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.758;LDAF=0.0102;AVGPOST=0.9941;RSQ=0.7580;ERATE=0.0008;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26030180 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.646;LDAF=0.0021;AVGPOST=0.9982;RSQ=0.6226;ERATE=0.0013;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26030282 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26030418 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.965;LDAF=0.9760;AVGPOST=0.9935;RSQ=0.9012;ERATE=0.0005;THETA=0.0008;AC=2133;AN=2184 GT:DS:GL:BD 0.97664833 1 1 26030516 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.1183;AVGPOST=0.9990;RSQ=0.9960;ERATE=0.0004;THETA=0.0004;AC=259;AN=2184 GT:DS:GL:BD 0.11858974 0 1 26030569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6434;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26030586 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4768;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26030600 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.8896;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26030613 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0280;AVGPOST=0.9988;RSQ=0.9842;ERATE=0.0004;THETA=0.0003;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 26030633 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26030820 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1022;AVGPOST=0.9992;RSQ=0.9965;ERATE=0.0004;THETA=0.0007;AC=223;AN=2184 GT:DS:GL:BD 0.10210623 0 1 26030892 . T TAG 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0017;AVGPOST=0.9978;RSQ=0.5336;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26030943 . AG A 1908 PASS INDEL;BAVGPOST=0.997;BRSQ=0.930;LDAF=0.0175;AVGPOST=0.9952;RSQ=0.8990;ERATE=0.0004;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 26030945 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0023;AVGPOST=0.9995;RSQ=0.9060;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26030946 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0024;AVGPOST=0.9993;RSQ=0.8708;ERATE=0.0004;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26030961 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.972;LDAF=0.0367;AVGPOST=0.9959;RSQ=0.9616;ERATE=0.0014;THETA=0.0009;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 26031001 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8358;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26031014 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0266;AVGPOST=0.9999;RSQ=0.9974;ERATE=0.0003;THETA=0.0003;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 26031094 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0044;AVGPOST=0.9986;RSQ=0.8634;ERATE=0.0005;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26031135 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8227;ERATE=0.0007;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26031193 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2761;AVGPOST=0.9991;RSQ=0.9986;ERATE=0.0003;THETA=0.0005;AC=604;AN=2184 GT:DS:GL:BD 0.27655679 0 1 26031217 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0290;AVGPOST=0.9994;RSQ=0.9945;ERATE=0.0003;THETA=0.0007;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 26031338 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0152;AVGPOST=0.9995;RSQ=0.9853;ERATE=0.0003;THETA=0.0008;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26031392 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26031713 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7197;ERATE=0.0011;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26031879 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0426;AVGPOST=0.9985;RSQ=0.9888;ERATE=0.0003;THETA=0.0005;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 26031895 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26032034 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2722;AVGPOST=0.9993;RSQ=0.9989;ERATE=0.0004;THETA=0.0020;AC=596;AN=2184 GT:DS:GL:BD 0.27289379 0 1 26032373 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4377;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26032409 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0074;AVGPOST=0.9992;RSQ=0.9499;ERATE=0.0004;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26032410 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.678;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26032760 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26032836 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26032884 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0015;AVGPOST=0.9991;RSQ=0.8061;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26033057 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7335;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26033255 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0031;AVGPOST=0.9992;RSQ=0.8858;ERATE=0.0004;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26033261 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26033451 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6889;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26033504 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.570;LDAF=0.0259;AVGPOST=0.9698;RSQ=0.5315;ERATE=0.0131;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 26033641 . T TG 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6876;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26033683 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7089;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26033727 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26033827 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5016;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26034122 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8514;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26034173 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26034203 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9492;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26034211 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5898;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26034491 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2061;AVGPOST=0.9989;RSQ=0.9973;ERATE=0.0003;THETA=0.0013;AC=451;AN=2184 GT:DS:GL:BD 0.20650183 0 1 26034672 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1287;AVGPOST=0.9984;RSQ=0.9947;ERATE=0.0003;THETA=0.0007;AC=282;AN=2184 GT:DS:GL:BD 0.12912089 0 1 26034682 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7677;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26034729 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5754;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26035141 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0081;AVGPOST=0.9992;RSQ=0.9560;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26035142 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.934;LDAF=0.0686;AVGPOST=0.9942;RSQ=0.9629;ERATE=0.0006;THETA=0.0007;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 26035182 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.869;LDAF=0.0135;AVGPOST=0.9943;RSQ=0.8277;ERATE=0.0005;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26035465 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.963;LDAF=0.0170;AVGPOST=0.9974;RSQ=0.9508;ERATE=0.0003;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 26035474 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0069;AVGPOST=0.9987;RSQ=0.9246;ERATE=0.0005;THETA=0.0009;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26035523 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9174;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26035610 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0038;AVGPOST=0.9974;RSQ=0.7267;ERATE=0.0007;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26035764 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8083;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26035800 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8747;ERATE=0.0004;THETA=0.0027;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26035978 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26036153 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0470;AVGPOST=0.9991;RSQ=0.9933;ERATE=0.0004;THETA=0.0003;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 26036166 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0035;AVGPOST=0.9978;RSQ=0.7646;ERATE=0.0008;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26036209 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7587;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26036231 . A ATC 1198 PASS INDEL;BAVGPOST=0.995;BRSQ=0.910;LDAF=0.0301;AVGPOST=0.9872;RSQ=0.8291;ERATE=0.0048;THETA=0.0007;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 26036275 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0019;AVGPOST=0.9976;RSQ=0.4837;ERATE=0.0007;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26036329 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0059;AVGPOST=0.9969;RSQ=0.7858;ERATE=0.0007;THETA=0.0015;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26036521 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6216;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26036708 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.806;LDAF=0.0021;AVGPOST=0.9980;RSQ=0.6357;ERATE=0.0010;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26036732 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.507;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7716;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26036747 . CCT C 57 PASS INDEL;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5188;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26036865 . CTTG C 513 PASS INDEL;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0035;AVGPOST=0.9976;RSQ=0.7202;ERATE=0.0006;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26036968 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26037205 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0036;AVGPOST=0.9973;RSQ=0.7305;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26037466 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.9001;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26037904 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26037905 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26037973 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0108;AVGPOST=0.9971;RSQ=0.8919;ERATE=0.0004;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26038080 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0032;AVGPOST=0.9981;RSQ=0.7578;ERATE=0.0007;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26038173 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.827;LDAF=0.0067;AVGPOST=0.9935;RSQ=0.6055;ERATE=0.0009;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26038290 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.698;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6295;ERATE=0.0006;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26038300 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0112;AVGPOST=0.9995;RSQ=0.9809;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26038304 . ACTTT A 350 PASS INDEL;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0048;AVGPOST=0.9984;RSQ=0.8827;ERATE=0.0005;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26038462 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8097;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26038487 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.634;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4038;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26038503 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0041;AVGPOST=0.9978;RSQ=0.7848;ERATE=0.0003;THETA=0.0013;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26038544 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.6382;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26038610 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7568;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26038682 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0057;AVGPOST=0.9996;RSQ=0.9657;ERATE=0.0004;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26038699 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1667;AVGPOST=0.9931;RSQ=0.9799;ERATE=0.0006;THETA=0.0006;AC=363;AN=2184 GT:DS:GL:BD 0.16620879 0 1 26038739 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0066;AVGPOST=0.9981;RSQ=0.8978;ERATE=0.0004;THETA=0.0011;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26038755 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5295;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26038790 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0142;AVGPOST=0.9974;RSQ=0.9298;ERATE=0.0004;THETA=0.0006;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26039053 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26039106 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26039209 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.994;LDAF=0.3112;AVGPOST=0.9926;RSQ=0.9898;ERATE=0.0017;THETA=0.0026;AC=680;AN=2184 GT:DS:GL:BD 0.31135532 0 1 26039366 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.6041;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26039434 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0067;AVGPOST=0.9994;RSQ=0.9666;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26039437 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8602;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26039531 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8261;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26039546 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26039552 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.787;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7619;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26039624 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.601;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5717;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26039684 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6343;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26039877 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26040007 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26040029 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2455;AVGPOST=0.9998;RSQ=0.9995;ERATE=0.0003;THETA=0.0005;AC=537;AN=2184 GT:DS:GL:BD 0.24587911 0 1 26040129 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0082;AVGPOST=0.9999;RSQ=0.9946;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26040139 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2373;AVGPOST=0.9983;RSQ=0.9968;ERATE=0.0005;THETA=0.0006;AC=519;AN=2184 GT:DS:GL:BD 0.23763736 0 1 26040319 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0128;AVGPOST=0.9954;RSQ=0.8809;ERATE=0.0009;THETA=0.0007;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26040328 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5157;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26040420 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.6425;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26040442 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0185;AVGPOST=0.9995;RSQ=0.9876;ERATE=0.0004;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 26040514 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2457;AVGPOST=0.9989;RSQ=0.9977;ERATE=0.0004;THETA=0.0007;AC=537;AN=2184 GT:DS:GL:BD 0.24587911 0 1 26040631 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7118;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26040637 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8519;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26040638 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0020;AVGPOST=0.9969;RSQ=0.4097;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26040962 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2557;AVGPOST=0.9979;RSQ=0.9964;ERATE=0.0005;THETA=0.0009;AC=559;AN=2184 GT:DS:GL:BD 0.25595239 0 1 26040964 . AC A 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.700;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4261;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26041031 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8366;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26041145 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0202;AVGPOST=0.9998;RSQ=0.9950;ERATE=0.0003;THETA=0.0006;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 26041166 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26041390 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=0.9999;RSQ=0.9944;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26041415 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8396;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26041462 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26041525 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7640;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26041643 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0033;AVGPOST=0.9988;RSQ=0.8524;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26041879 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6200;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26041911 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9233;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26042192 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0286;AVGPOST=0.9985;RSQ=0.9803;ERATE=0.0003;THETA=0.0006;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 26042408 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26042420 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26042471 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26042492 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0456;AVGPOST=0.9984;RSQ=0.9887;ERATE=0.0003;THETA=0.0014;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 26042661 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0213;AVGPOST=0.9987;RSQ=0.9778;ERATE=0.0003;THETA=0.0007;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 26042682 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26042693 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6992;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26042721 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8185;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26042735 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26042905 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6934;ERATE=0.0005;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26042961 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.800;LDAF=0.0016;AVGPOST=0.9980;RSQ=0.4702;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26043018 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8179;ERATE=0.0005;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26043248 . A AATGT 38 PASS INDEL;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0024;AVGPOST=0.9985;RSQ=0.7247;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26043335 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8503;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26043520 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26043854 . TTA T 52 PASS INDEL;BAVGPOST=0.996;BRSQ=0.604;LDAF=0.0124;AVGPOST=0.9824;RSQ=0.4178;ERATE=0.0032;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26044035 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26044130 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.968;LDAF=0.2572;AVGPOST=0.9905;RSQ=0.9827;ERATE=0.0007;THETA=0.0006;AC=566;AN=2184 GT:DS:GL:BD 0.25915751 0 1 26044185 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.921;LDAF=0.0087;AVGPOST=0.9961;RSQ=0.8434;ERATE=0.0006;THETA=0.0010;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26044269 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.921;LDAF=0.2487;AVGPOST=0.9846;RSQ=0.9731;ERATE=0.0025;THETA=0.0012;AC=550;AN=2184 GT:DS:GL:BD 0.25183150 0 1 26044275 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.3901;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26044363 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5521;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26044410 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0013;AVGPOST=0.9981;RSQ=0.5624;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26044562 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7068;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26044600 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26044679 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0399;AVGPOST=0.9995;RSQ=0.9945;ERATE=0.0003;THETA=0.0009;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 26044793 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.901;LDAF=0.0242;AVGPOST=0.9958;RSQ=0.9298;ERATE=0.0006;THETA=0.0008;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 26044942 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.5087;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26044974 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0083;AVGPOST=0.9997;RSQ=0.9841;ERATE=0.0004;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26045029 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26045090 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0069;AVGPOST=0.9991;RSQ=0.9476;ERATE=0.0004;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26045251 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1947;AVGPOST=0.9989;RSQ=0.9973;ERATE=0.0003;THETA=0.0004;AC=425;AN=2184 GT:DS:GL:BD 0.19459707 0 1 26045332 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7641;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26045413 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.5335;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26045553 . T TCCA 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0030;AVGPOST=0.9962;RSQ=0.5094;ERATE=0.0006;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26045663 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.899;LDAF=0.0380;AVGPOST=0.9960;RSQ=0.9547;ERATE=0.0009;THETA=0.0012;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 26045725 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.565;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6885;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26045811 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.287;LDAF=0.0155;AVGPOST=0.9811;RSQ=0.4965;ERATE=0.0022;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26045856 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0090;AVGPOST=0.9974;RSQ=0.8817;ERATE=0.0004;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26045885 . CTTTTATTT C 1427 PASS INDEL;BAVGPOST=0.968;BRSQ=0.627;LDAF=0.0872;AVGPOST=0.8953;RSQ=0.4691;ERATE=0.0226;THETA=0.0005;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 26046077 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0070;AVGPOST=0.9986;RSQ=0.9200;ERATE=0.0005;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26046133 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5112;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26046155 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2027;AVGPOST=0.9984;RSQ=0.9956;ERATE=0.0005;THETA=0.0006;AC=443;AN=2184 GT:DS:GL:BD 0.20283882 0 1 26046254 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26046271 . T TTTTG 212 PASS INDEL;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0018;AVGPOST=0.9988;RSQ=0.6932;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26046272 . T TTTG 223 PASS INDEL;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0020;AVGPOST=0.9989;RSQ=0.8121;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26046323 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26046336 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26046352 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.783;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.6858;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26046367 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0023;AVGPOST=0.9984;RSQ=0.7154;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26046419 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.3860;ERATE=0.0009;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26046562 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6401;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26046572 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0130;AVGPOST=0.9987;RSQ=0.9561;ERATE=0.0005;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26046790 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.761;LDAF=0.0054;AVGPOST=0.9957;RSQ=0.6475;ERATE=0.0009;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26046934 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0084;AVGPOST=0.9996;RSQ=0.9764;ERATE=0.0004;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26046954 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.963;LDAF=0.0460;AVGPOST=0.9990;RSQ=0.9915;ERATE=0.0003;THETA=0.0007;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 26047037 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7044;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26047050 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8561;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26047088 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.5357;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26047218 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0083;AVGPOST=0.9998;RSQ=0.9868;ERATE=0.0003;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26047249 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.924;LDAF=0.0287;AVGPOST=0.9947;RSQ=0.9271;ERATE=0.0004;THETA=0.0003;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 26047309 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8100;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26047426 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0093;AVGPOST=0.9995;RSQ=0.9745;ERATE=0.0004;THETA=0.0017;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26047427 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0423;AVGPOST=0.9993;RSQ=0.9923;ERATE=0.0003;THETA=0.0006;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 26047534 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26047655 . A AT 335 PASS INDEL;BAVGPOST=0.998;BRSQ=0.882;LDAF=0.0144;AVGPOST=0.9893;RSQ=0.7285;ERATE=0.0012;THETA=0.0006;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26047875 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0046;AVGPOST=0.9983;RSQ=0.8849;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26047972 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2027;AVGPOST=0.9989;RSQ=0.9968;ERATE=0.0003;THETA=0.0006;AC=443;AN=2184 GT:DS:GL:BD 0.20283882 0 1 26048053 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9992;RSQ=0.9576;ERATE=0.0004;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26048129 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26048208 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7893;ERATE=0.0005;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26048329 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4596;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26048442 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26048475 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7855;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26048510 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26048522 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0023;AVGPOST=0.9993;RSQ=0.8727;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26048531 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5571;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26048613 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1947;AVGPOST=0.9991;RSQ=0.9975;ERATE=0.0004;THETA=0.0008;AC=426;AN=2184 GT:DS:GL:BD 0.19505495 0 1 26048885 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26049168 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.973;LDAF=0.0230;AVGPOST=0.9981;RSQ=0.9705;ERATE=0.0005;THETA=0.0028;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 26049337 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0208;AVGPOST=0.9995;RSQ=0.9898;ERATE=0.0003;THETA=0.0017;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 26049352 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26049380 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0034;AVGPOST=0.9987;RSQ=0.8558;ERATE=0.0006;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26049404 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7140;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26049589 . C CG 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6805;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26049708 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8871;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26049763 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.766;LDAF=0.0021;AVGPOST=0.9979;RSQ=0.6431;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26049838 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.1021;AVGPOST=0.9988;RSQ=0.9946;ERATE=0.0004;THETA=0.0008;AC=223;AN=2184 GT:DS:GL:BD 0.10210623 0 1 26050141 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26050257 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6034;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26050404 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7204;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26050463 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7827;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26050588 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.987;LDAF=0.2005;AVGPOST=0.9943;RSQ=0.9860;ERATE=0.0006;THETA=0.0005;AC=435;AN=2184 GT:DS:GL:BD 0.19917582 0 1 26050589 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.698;LDAF=0.0038;AVGPOST=0.9964;RSQ=0.5844;ERATE=0.0005;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26050607 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.657;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.3924;ERATE=0.0008;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26050740 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.822;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26050872 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.953;LDAF=0.0217;AVGPOST=0.9952;RSQ=0.9236;ERATE=0.0004;THETA=0.0007;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 26051013 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9196;ERATE=0.0003;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26051078 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0079;AVGPOST=0.9993;RSQ=0.9610;ERATE=0.0003;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26051276 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4815;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26051313 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26051335 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26051424 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0115;AVGPOST=0.9998;RSQ=0.9938;ERATE=0.0004;THETA=0.0009;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26051438 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26051451 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26051523 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.2537;AVGPOST=0.9984;RSQ=0.9966;ERATE=0.0005;THETA=0.0014;AC=554;AN=2184 GT:DS:GL:BD 0.25366300 0 1 26051625 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0036;AVGPOST=0.9988;RSQ=0.8680;ERATE=0.0004;THETA=0.0023;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26051824 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8388;ERATE=0.0004;THETA=0.0055;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26051829 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0044;AVGPOST=0.9991;RSQ=0.9226;ERATE=0.0011;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26051893 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6065;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26052043 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0018;AVGPOST=0.9988;RSQ=0.7351;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26052071 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7324;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26052124 . G GA 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0022;AVGPOST=0.9978;RSQ=0.5356;ERATE=0.0007;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26052183 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26052218 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0032;AVGPOST=0.9992;RSQ=0.8928;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26052276 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6392;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26052396 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0032;AVGPOST=0.9977;RSQ=0.7668;ERATE=0.0006;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26052441 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.978;LDAF=0.0340;AVGPOST=0.9979;RSQ=0.9754;ERATE=0.0003;THETA=0.0005;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 26052570 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8935;ERATE=0.0004;THETA=0.0029;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26052575 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7359;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26052668 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0031;AVGPOST=0.9981;RSQ=0.7712;ERATE=0.0004;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26052762 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0127;AVGPOST=0.9994;RSQ=0.9855;ERATE=0.0003;THETA=0.0008;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26052776 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0989;AVGPOST=0.9997;RSQ=0.9985;ERATE=0.0003;THETA=0.0010;AC=216;AN=2184 GT:DS:GL:BD 0.09890110 0 1 26052925 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26053088 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0055;AVGPOST=0.9989;RSQ=0.9105;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26053122 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26053182 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.928;LDAF=0.0207;AVGPOST=0.9969;RSQ=0.9444;ERATE=0.0004;THETA=0.0008;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 26053503 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0028;AVGPOST=0.9983;RSQ=0.7421;ERATE=0.0005;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26053505 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6359;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26053523 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0285;AVGPOST=0.9997;RSQ=0.9945;ERATE=0.0003;THETA=0.0007;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 26053646 . TTAC T 73 PASS INDEL;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5038;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26053712 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0362;AVGPOST=0.9999;RSQ=0.9988;ERATE=0.0003;THETA=0.0006;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 26053747 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9382;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26053808 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0041;AVGPOST=0.9989;RSQ=0.8978;ERATE=0.0006;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26053863 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0045;AVGPOST=0.9993;RSQ=0.9368;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26053928 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0032;AVGPOST=0.9985;RSQ=0.8266;ERATE=0.0003;THETA=0.0026;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26053958 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1623;AVGPOST=0.9872;RSQ=0.9640;ERATE=0.0007;THETA=0.0003;AC=352;AN=2184 GT:DS:GL:BD 0.16117217 0 1 26053997 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0991;AVGPOST=0.9989;RSQ=0.9956;ERATE=0.0004;THETA=0.0005;AC=216;AN=2184 GT:DS:GL:BD 0.09890110 0 1 26054056 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7860;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26054158 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.6129;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26054160 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0076;AVGPOST=0.9994;RSQ=0.9742;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26054169 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7636;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26054177 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5311;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26054192 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4467;ERATE=0.0006;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26054202 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5717;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26054640 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0124;AVGPOST=0.9989;RSQ=0.9707;ERATE=0.0004;THETA=0.0023;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26054711 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26054722 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0040;AVGPOST=0.9985;RSQ=0.8465;ERATE=0.0005;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26054854 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0034;AVGPOST=0.9991;RSQ=0.8819;ERATE=0.0004;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26054905 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26054921 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.8026;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26055056 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0028;AVGPOST=0.9977;RSQ=0.6804;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26055059 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0285;AVGPOST=0.9996;RSQ=0.9938;ERATE=0.0003;THETA=0.0007;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 26055104 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5219;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26055226 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.436;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6031;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26055227 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26055293 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6541;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26055354 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0039;AVGPOST=0.9990;RSQ=0.8924;ERATE=0.0004;THETA=0.0012;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26055501 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0120;AVGPOST=0.9998;RSQ=0.9926;ERATE=0.0003;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26055631 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0094;AVGPOST=0.9995;RSQ=0.9728;ERATE=0.0004;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26055693 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0115;AVGPOST=0.9989;RSQ=0.9602;ERATE=0.0004;THETA=0.0022;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26055799 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0984;AVGPOST=0.9980;RSQ=0.9924;ERATE=0.0003;THETA=0.0007;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 26056039 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.5052;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26056191 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.715;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5491;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26056249 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8519;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26056291 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0055;AVGPOST=0.9992;RSQ=0.9351;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26056322 . AG A 53 PASS INDEL;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0023;AVGPOST=0.9988;RSQ=0.7636;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26056343 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26056492 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5431;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26056514 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26056957 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0038;AVGPOST=0.9994;RSQ=0.9226;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26057010 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0137;AVGPOST=0.9980;RSQ=0.9412;ERATE=0.0003;THETA=0.0009;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26057018 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5736;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26057040 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0956;AVGPOST=0.9983;RSQ=0.9925;ERATE=0.0005;THETA=0.0004;AC=209;AN=2184 GT:DS:GL:BD 0.09569597 0 1 26057059 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9156;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26057148 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26057309 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.2645;AVGPOST=0.9936;RSQ=0.9892;ERATE=0.0021;THETA=0.0007;AC=580;AN=2184 GT:DS:GL:BD 0.26556778 0 1 26057416 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.917;LDAF=0.0193;AVGPOST=0.9954;RSQ=0.9030;ERATE=0.0005;THETA=0.0007;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 26057464 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0248;AVGPOST=0.9984;RSQ=0.9769;ERATE=0.0003;THETA=0.0006;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 26057662 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.774;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4702;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26057854 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26058071 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26058351 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0282;AVGPOST=0.9995;RSQ=0.9912;ERATE=0.0004;THETA=0.0013;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 26058549 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6875;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26058585 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5268;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26058613 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.953;LDAF=0.0284;AVGPOST=0.9985;RSQ=0.9769;ERATE=0.0004;THETA=0.0009;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 26058726 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7245;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26058773 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0076;AVGPOST=0.9977;RSQ=0.8997;ERATE=0.0006;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26058920 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9997;RSQ=0.9805;ERATE=0.0004;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26058962 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0078;AVGPOST=0.9990;RSQ=0.9501;ERATE=0.0004;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26059018 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8901;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26059058 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0140;AVGPOST=0.9980;RSQ=0.9480;ERATE=0.0004;THETA=0.0008;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26059123 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.932;LDAF=0.0149;AVGPOST=0.9976;RSQ=0.9451;ERATE=0.0005;THETA=0.0007;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 26059502 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26059649 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.978;LDAF=0.0954;AVGPOST=0.9978;RSQ=0.9899;ERATE=0.0005;THETA=0.0010;AC=209;AN=2184 GT:DS:GL:BD 0.09569597 0 1 26059650 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.978;LDAF=0.0941;AVGPOST=0.9975;RSQ=0.9892;ERATE=0.0005;THETA=0.0008;AC=207;AN=2184 GT:DS:GL:BD 0.09478022 0 1 26059864 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5372;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26059999 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0044;AVGPOST=0.9985;RSQ=0.8684;ERATE=0.0005;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26060030 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0307;AVGPOST=0.9981;RSQ=0.9763;ERATE=0.0005;THETA=0.0007;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 26060101 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0624;AVGPOST=0.9979;RSQ=0.9855;ERATE=0.0004;THETA=0.0025;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 26060154 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0225;AVGPOST=0.9981;RSQ=0.9699;ERATE=0.0003;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 26060224 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5887;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26060298 . TA T 1356 PASS INDEL;BAVGPOST=0.995;BRSQ=0.867;LDAF=0.0327;AVGPOST=0.9767;RSQ=0.7087;ERATE=0.0043;THETA=0.0004;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 26060299 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.849;LDAF=0.0276;AVGPOST=0.9875;RSQ=0.8182;ERATE=0.0020;THETA=0.0011;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 26060408 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.408;LDAF=0.0411;AVGPOST=0.9442;RSQ=0.4292;ERATE=0.0078;THETA=0.0012;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 26060448 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.439;LDAF=0.0034;AVGPOST=0.9941;RSQ=0.3061;ERATE=0.0006;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26060492 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.551;LDAF=0.0293;AVGPOST=0.9646;RSQ=0.4824;ERATE=0.0058;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26060644 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.6394;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26060654 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5281;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26060684 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0144;AVGPOST=0.9988;RSQ=0.9662;ERATE=0.0004;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 26060689 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0377;AVGPOST=0.9979;RSQ=0.9773;ERATE=0.0005;THETA=0.0005;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 26060736 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0124;AVGPOST=0.9979;RSQ=0.9296;ERATE=0.0004;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26060785 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.981;LDAF=0.2945;AVGPOST=0.9941;RSQ=0.9909;ERATE=0.0005;THETA=0.0014;AC=647;AN=2184 GT:DS:GL:BD 0.29624543 0 1 26060927 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26061120 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0285;AVGPOST=0.9997;RSQ=0.9954;ERATE=0.0003;THETA=0.0013;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 26061184 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6141;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26061266 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0641;AVGPOST=0.9986;RSQ=0.9921;ERATE=0.0004;THETA=0.0005;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 26061312 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8880;ERATE=0.0008;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26061323 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26061367 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9330;ERATE=0.0004;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26061400 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.835;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7279;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26061444 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0098;AVGPOST=0.9979;RSQ=0.9185;ERATE=0.0005;THETA=0.0010;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26061490 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26061621 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6951;ERATE=0.0004;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26061642 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.751;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7017;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26061665 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0322;AVGPOST=0.9974;RSQ=0.9657;ERATE=0.0005;THETA=0.0003;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 26061726 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0108;AVGPOST=0.9973;RSQ=0.9058;ERATE=0.0004;THETA=0.0010;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26061729 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.783;LDAF=0.0043;AVGPOST=0.9970;RSQ=0.7085;ERATE=0.0005;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26061896 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6583;ERATE=0.0007;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26061951 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0040;AVGPOST=0.9983;RSQ=0.8471;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26061971 . ATATATGTGTG A 442 PASS INDEL;BAVGPOST=1.000;BRSQ=0.727;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4703;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26062007 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0093;AVGPOST=0.9997;RSQ=0.9859;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26062116 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26062123 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26062142 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9583;ERATE=0.0004;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26062218 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.940;LDAF=0.0132;AVGPOST=0.9991;RSQ=0.9689;ERATE=0.0004;THETA=0.0006;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26062365 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26062427 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0004;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26062449 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26062613 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0255;AVGPOST=0.9993;RSQ=0.9904;ERATE=0.0003;THETA=0.0004;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 26062636 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0111;AVGPOST=0.9998;RSQ=0.9900;ERATE=0.0003;THETA=0.0011;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26062646 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.0945;AVGPOST=0.9973;RSQ=0.9880;ERATE=0.0005;THETA=0.0007;AC=207;AN=2184 GT:DS:GL:BD 0.09478022 0 1 26062656 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.2826;AVGPOST=0.9954;RSQ=0.9927;ERATE=0.0004;THETA=0.0006;AC=620;AN=2184 GT:DS:GL:BD 0.28388280 0 1 26062673 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26062851 . TA T 659 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0046;AVGPOST=0.9991;RSQ=0.9102;ERATE=0.0004;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26063039 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0098;AVGPOST=0.9976;RSQ=0.9062;ERATE=0.0004;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26063043 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0643;AVGPOST=0.9986;RSQ=0.9905;ERATE=0.0005;THETA=0.0009;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 26063045 . T TC 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0018;AVGPOST=0.9988;RSQ=0.7364;ERATE=0.0004;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26063056 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0278;AVGPOST=0.9976;RSQ=0.9644;ERATE=0.0004;THETA=0.0003;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 26063167 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0142;AVGPOST=0.9999;RSQ=0.9972;ERATE=0.0003;THETA=0.0025;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 26063246 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26063283 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0286;AVGPOST=0.9995;RSQ=0.9922;ERATE=0.0004;THETA=0.0008;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 26063299 . T TGAGC 183 PASS INDEL;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0015;AVGPOST=0.9992;RSQ=0.7644;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26063314 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0041;AVGPOST=0.9989;RSQ=0.8809;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26063388 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.798;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6109;ERATE=0.0008;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26063430 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.875;LDAF=0.0098;AVGPOST=0.9991;RSQ=0.9574;ERATE=0.0004;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26063530 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0655;AVGPOST=0.9989;RSQ=0.9942;ERATE=0.0003;THETA=0.0005;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 26063596 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26063636 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0173;AVGPOST=0.9983;RSQ=0.9655;ERATE=0.0003;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 26063782 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0649;AVGPOST=0.9988;RSQ=0.9919;ERATE=0.0004;THETA=0.0010;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 26063816 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7778;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26063846 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6200;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26063851 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.602;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26063900 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.962;LDAF=0.0287;AVGPOST=0.9989;RSQ=0.9822;ERATE=0.0004;THETA=0.0007;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 26064037 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8713;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26064159 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0279;AVGPOST=0.9989;RSQ=0.9866;ERATE=0.0004;THETA=0.0009;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 26064251 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5895;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26064266 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0066;AVGPOST=0.9986;RSQ=0.9153;ERATE=0.0003;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26064280 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0942;AVGPOST=0.9985;RSQ=0.9930;ERATE=0.0004;THETA=0.0007;AC=205;AN=2184 GT:DS:GL:BD 0.09386447 0 1 26064339 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26064360 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0112;AVGPOST=0.9996;RSQ=0.9823;ERATE=0.0003;THETA=0.0016;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26064426 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8116;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26064456 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26064562 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0035;AVGPOST=0.9985;RSQ=0.8430;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26064599 . T TCTA 4415 PASS INDEL;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0157;AVGPOST=0.9981;RSQ=0.9544;ERATE=0.0004;THETA=0.0004;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26064705 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26064717 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26064779 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8869;ERATE=0.0006;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26064835 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6228;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26064886 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0040;AVGPOST=0.9991;RSQ=0.9140;ERATE=0.0004;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26064944 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0118;AVGPOST=0.9992;RSQ=0.9706;ERATE=0.0003;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26065123 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0081;AVGPOST=0.9992;RSQ=0.9601;ERATE=0.0003;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26065134 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0093;AVGPOST=0.9996;RSQ=0.9815;ERATE=0.0004;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26065150 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0376;AVGPOST=0.9996;RSQ=0.9955;ERATE=0.0004;THETA=0.0008;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 26065286 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.2880;AVGPOST=0.9979;RSQ=0.9968;ERATE=0.0003;THETA=0.0009;AC=629;AN=2184 GT:DS:GL:BD 0.28800365 0 1 26065311 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.9167;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26065528 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26065549 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0003;AVGPOST=0.9996;RSQ=0.5697;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26065670 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.604;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8696;ERATE=0.0003;THETA=0.0029;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26065719 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0284;AVGPOST=0.9995;RSQ=0.9919;ERATE=0.0004;THETA=0.0005;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 26065953 . GC G 240 PASS INDEL;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6459;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26066054 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0661;AVGPOST=0.9995;RSQ=0.9966;ERATE=0.0003;THETA=0.0011;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 26066422 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.551;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6140;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26066423 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0286;AVGPOST=0.9995;RSQ=0.9918;ERATE=0.0003;THETA=0.0008;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 26066491 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.971;LDAF=0.0610;AVGPOST=0.9978;RSQ=0.9861;ERATE=0.0003;THETA=0.0009;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 26066492 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4662;ERATE=0.0005;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26066514 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0307;AVGPOST=0.9993;RSQ=0.9885;ERATE=0.0005;THETA=0.0007;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 26066873 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7174;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26066933 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.972;LDAF=0.0288;AVGPOST=0.9975;RSQ=0.9662;ERATE=0.0004;THETA=0.0004;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 26066997 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.546;LDAF=0.0050;AVGPOST=0.9954;RSQ=0.6065;ERATE=0.0008;THETA=0.0019;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26067013 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0650;AVGPOST=0.9944;RSQ=0.9684;ERATE=0.0007;THETA=0.0072;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 26067088 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0199;AVGPOST=0.9943;RSQ=0.8914;ERATE=0.0008;THETA=0.0009;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 26067089 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.959;LDAF=0.0702;AVGPOST=0.9969;RSQ=0.9803;ERATE=0.0008;THETA=0.0007;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 26067118 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.606;LDAF=0.0157;AVGPOST=0.9902;RSQ=0.7613;ERATE=0.0015;THETA=0.0007;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26067160 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.715;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4198;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26067217 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0519;AVGPOST=0.9960;RSQ=0.9721;ERATE=0.0008;THETA=0.0008;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 26067263 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4830;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26067325 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0197;AVGPOST=0.9995;RSQ=0.9881;ERATE=0.0003;THETA=0.0008;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 26067403 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0055;AVGPOST=0.9993;RSQ=0.9546;ERATE=0.0005;THETA=0.0012;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26067428 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.937;LDAF=0.0108;AVGPOST=0.9983;RSQ=0.9317;ERATE=0.0004;THETA=0.0010;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26067461 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0629;AVGPOST=0.9993;RSQ=0.9944;ERATE=0.0004;THETA=0.0007;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 26067628 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26067714 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.632;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4543;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26067821 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0509;AVGPOST=0.9984;RSQ=0.9903;ERATE=0.0003;THETA=0.0009;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 26067845 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6782;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26067887 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1252;AVGPOST=0.9953;RSQ=0.9843;ERATE=0.0006;THETA=0.0009;AC=273;AN=2184 GT:DS:GL:BD 0.12500000 0 1 26067981 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26068063 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9558;ERATE=0.0003;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26068074 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0037;AVGPOST=0.9995;RSQ=0.9336;ERATE=0.0004;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26068091 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.758;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26068111 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0285;AVGPOST=0.9995;RSQ=0.9910;ERATE=0.0004;THETA=0.0007;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 26068505 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4553;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26068618 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9804;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26068763 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0082;AVGPOST=0.9994;RSQ=0.9604;ERATE=0.0004;THETA=0.0011;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26068863 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7896;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26068996 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0793;AVGPOST=0.9981;RSQ=0.9904;ERATE=0.0004;THETA=0.0007;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 26069064 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0040;AVGPOST=0.9984;RSQ=0.8436;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26069073 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0088;AVGPOST=0.9995;RSQ=0.9710;ERATE=0.0004;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26069202 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26069217 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9244;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26069222 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.514;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6659;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26069415 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.1836;AVGPOST=0.9886;RSQ=0.9720;ERATE=0.0005;THETA=0.0016;AC=402;AN=2184 GT:DS:GL:BD 0.18406594 0 1 26069459 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5592;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26069507 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0878;AVGPOST=0.9995;RSQ=0.9976;ERATE=0.0003;THETA=0.0004;AC=192;AN=2184 GT:DS:GL:BD 0.08791209 0 1 26069702 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.811;LDAF=0.0023;AVGPOST=0.9995;RSQ=0.9114;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26069908 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0080;AVGPOST=0.9994;RSQ=0.9676;ERATE=0.0003;THETA=0.0014;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26070184 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0647;AVGPOST=0.9994;RSQ=0.9954;ERATE=0.0004;THETA=0.0049;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 26070204 . GA G 166 PASS INDEL;BAVGPOST=1.000;BRSQ=0.745;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4447;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26070245 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.911;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7985;ERATE=0.0004;THETA=0.0026;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26070418 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6808;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26070423 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9633;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26070430 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26070487 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0020;AVGPOST=0.9971;RSQ=0.4963;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26070560 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26070567 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0046;AVGPOST=0.9980;RSQ=0.8461;ERATE=0.0006;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26070618 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0026;AVGPOST=0.9986;RSQ=0.7905;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26070654 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0247;AVGPOST=0.9982;RSQ=0.9675;ERATE=0.0003;THETA=0.0007;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 26070730 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0857;AVGPOST=0.9978;RSQ=0.9893;ERATE=0.0006;THETA=0.0112;AC=187;AN=2184 GT:DS:GL:BD 0.08562271 0 1 26070742 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7633;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26070811 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0030;AVGPOST=0.9970;RSQ=0.6417;ERATE=0.0007;THETA=0.0014;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26070909 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.975;LDAF=0.3812;AVGPOST=0.9794;RSQ=0.9712;ERATE=0.0005;THETA=0.0070;AC=833;AN=2184 GT:DS:GL:BD 0.38141027 0 1 26070935 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.6454;ERATE=0.0004;THETA=0.0040;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26071093 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7373;ERATE=0.0003;THETA=0.0031;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26071257 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0035;AVGPOST=0.9984;RSQ=0.8340;ERATE=0.0004;THETA=0.0035;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26071258 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0035;AVGPOST=0.9984;RSQ=0.8398;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26071297 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.938;LDAF=0.0087;AVGPOST=0.9981;RSQ=0.9153;ERATE=0.0003;THETA=0.0013;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26071303 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0019;AVGPOST=0.9977;RSQ=0.4939;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26071304 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6645;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26071404 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9179;ERATE=0.0004;THETA=0.0048;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26071416 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6616;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26071422 . A AT 7 PASS INDEL;BAVGPOST=0.999;BRSQ=0.630;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5263;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26071464 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0047;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26071678 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26071740 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0085;AVGPOST=0.9995;RSQ=0.9690;ERATE=0.0005;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26071814 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0055;AVGPOST=0.9987;RSQ=0.8947;ERATE=0.0005;THETA=0.0044;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26071839 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0110;AVGPOST=0.9978;RSQ=0.9211;ERATE=0.0005;THETA=0.0026;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26071910 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.855;LDAF=0.0088;AVGPOST=0.9983;RSQ=0.9169;ERATE=0.0005;THETA=0.0016;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26071991 . G GT 47 PASS INDEL;BAVGPOST=0.998;BRSQ=0.505;LDAF=0.0050;AVGPOST=0.9952;RSQ=0.6158;ERATE=0.0010;THETA=0.0013;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26072050 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0059;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26072083 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9341;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26072098 . GA G 249 PASS INDEL;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0025;AVGPOST=0.9978;RSQ=0.5952;ERATE=0.0007;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26072101 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5717;ERATE=0.0004;THETA=0.0054;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26072103 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0218;AVGPOST=0.9992;RSQ=0.9840;ERATE=0.0005;THETA=0.0012;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 26072208 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.564;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5062;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26072482 rs111900048 C CA 176 PASS INDEL;BAVGPOST=0.968;BRSQ=0.534;LDAF=0.0559;AVGPOST=0.9349;RSQ=0.4797;ERATE=0.0215;THETA=0.0008;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 26072534 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0212;AVGPOST=0.9994;RSQ=0.9843;ERATE=0.0004;THETA=0.0007;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 26072657 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.865;LDAF=0.0063;AVGPOST=0.9983;RSQ=0.8907;ERATE=0.0004;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26072659 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5253;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26072744 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5514;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26072745 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.543;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5107;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26072942 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0213;AVGPOST=0.9994;RSQ=0.9884;ERATE=0.0003;THETA=0.0004;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 26073051 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9882;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26073242 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0128;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26073295 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26073400 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0107;AVGPOST=0.9992;RSQ=0.9696;ERATE=0.0003;THETA=0.0092;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26073443 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.985;LDAF=0.8763;AVGPOST=0.9955;RSQ=0.9845;ERATE=0.0003;THETA=0.0046;AC=1915;AN=2184 GT:DS:GL:BD 0.87683153 1 1 26073499 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0004;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26073514 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0153;AVGPOST=0.9987;RSQ=0.9668;ERATE=0.0005;THETA=0.0050;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 26073524 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.1030;AVGPOST=0.9957;RSQ=0.9835;ERATE=0.0004;THETA=0.0008;AC=224;AN=2184 GT:DS:GL:BD 0.10256410 0 1 26073571 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8330;ERATE=0.0007;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26073611 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.612;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4994;ERATE=0.0005;THETA=0.0055;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26073621 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0044;AVGPOST=0.9976;RSQ=0.7885;ERATE=0.0003;THETA=0.0031;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26073717 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0698;AVGPOST=0.9972;RSQ=0.9827;ERATE=0.0004;THETA=0.0006;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 26073729 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0741;AVGPOST=0.9974;RSQ=0.9855;ERATE=0.0005;THETA=0.0035;AC=162;AN=2184 GT:DS:GL:BD 0.07417583 0 1 26073730 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8519;ERATE=0.0003;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26073734 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.630;LDAF=0.0025;AVGPOST=0.9961;RSQ=0.4048;ERATE=0.0006;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26073943 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.818;LDAF=0.0037;AVGPOST=0.9972;RSQ=0.7294;ERATE=0.0008;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26074002 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8608;ERATE=0.0006;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26074037 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.981;LDAF=0.0726;AVGPOST=0.9918;RSQ=0.9505;ERATE=0.0024;THETA=0.0010;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 26074038 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.792;LDAF=0.0024;AVGPOST=0.9973;RSQ=0.5356;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26074084 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.931;LDAF=0.0112;AVGPOST=0.9988;RSQ=0.9541;ERATE=0.0005;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26074287 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.880;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7129;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26074297 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26074316 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0056;AVGPOST=0.9979;RSQ=0.8824;ERATE=0.0014;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26074380 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.933;LDAF=0.0139;AVGPOST=0.9971;RSQ=0.9193;ERATE=0.0004;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26074407 . AT A 4227 PASS INDEL;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0216;AVGPOST=0.9984;RSQ=0.9708;ERATE=0.0005;THETA=0.0007;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 26074504 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26074566 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9993;RSQ=0.8887;ERATE=0.0005;THETA=0.0110;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26074575 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.918;LDAF=0.0100;AVGPOST=0.9990;RSQ=0.9612;ERATE=0.0003;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26074584 . G GT 3964 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0218;AVGPOST=0.9985;RSQ=0.9715;ERATE=0.0005;THETA=0.0036;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 26074940 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0133;AVGPOST=0.9990;RSQ=0.9693;ERATE=0.0003;THETA=0.0075;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26074963 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1320;AVGPOST=0.9969;RSQ=0.9900;ERATE=0.0005;THETA=0.0017;AC=286;AN=2184 GT:DS:GL:BD 0.13095239 0 1 26075267 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8262;ERATE=0.0004;THETA=0.0029;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26075377 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.7037;AVGPOST=0.9971;RSQ=0.9941;ERATE=0.0008;THETA=0.0003;AC=1537;AN=2184 GT:DS:GL:BD 0.70375460 1 1 26075447 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0014;AVGPOST=0.9993;RSQ=0.7843;ERATE=0.0005;THETA=0.0026;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26075548 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26075617 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8499;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26075626 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26075748 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0097;AVGPOST=0.9998;RSQ=0.9916;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26075769 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26075787 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.697;LDAF=0.0008;AVGPOST=0.9998;RSQ=0.8876;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26075812 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26075871 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26076062 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.5997;AVGPOST=0.9988;RSQ=0.9979;ERATE=0.0003;THETA=0.0015;AC=1309;AN=2184 GT:DS:GL:BD 0.59935898 1 1 26076481 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1346;AVGPOST=0.9977;RSQ=0.9926;ERATE=0.0006;THETA=0.0007;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 26076489 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.673;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7637;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26076520 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5522;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26076574 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1454;AVGPOST=0.9972;RSQ=0.9922;ERATE=0.0004;THETA=0.0006;AC=318;AN=2184 GT:DS:GL:BD 0.14560440 0 1 26076612 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6995;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26076656 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.830;LDAF=0.0062;AVGPOST=0.9954;RSQ=0.6783;ERATE=0.0020;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26076713 . TTC T 6849 PASS INDEL;BAVGPOST=0.879;BRSQ=0.787;LDAF=0.4291;AVGPOST=0.8418;RSQ=0.7639;ERATE=0.0215;THETA=0.0003;AC=972;AN=2184 GT:DS:GL:BD 0.44505495 0 1 26076714 rs10600964 TCTC T 49732 PASS INDEL;BAVGPOST=0.958;BRSQ=0.933;LDAF=0.5930;AVGPOST=0.9898;RSQ=0.9839;ERATE=0.0009;THETA=0.0005;AC=1301;AN=2184 GT:DS:GL:BD 0.59569597 1 1 26076718 rs10524832 CT C 5973 PASS INDEL;BAVGPOST=0.883;BRSQ=0.819;LDAF=0.4775;AVGPOST=0.8906;RSQ=0.8579;ERATE=0.0006;THETA=0.0004;AC=1084;AN=2184 GT:DS:GL:BD 0.49633700 0 1 26076719 rs10524832 TC T 314 PASS INDEL;BAVGPOST=0.780;BRSQ=0.649;LDAF=0.3470;AVGPOST=0.7984;RSQ=0.7117;ERATE=0.0029;THETA=0.0008;AC=805;AN=2184 GT:DS:GL:BD 0.36858973 0 1 26076930 rs34187794 CAA C 37805 PASS INDEL;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5622;AVGPOST=0.9749;RSQ=0.9658;ERATE=0.0037;THETA=0.0008;AC=1228;AN=2184 GT:DS:GL:BD 0.56227106 1 1 26076967 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.638;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.5914;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26076968 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.601;LDAF=0.0060;AVGPOST=0.9935;RSQ=0.5401;ERATE=0.0008;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26076980 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.960;LDAF=0.0361;AVGPOST=0.9968;RSQ=0.9633;ERATE=0.0006;THETA=0.0004;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 26077226 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.9148;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26077227 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0059;AVGPOST=0.9978;RSQ=0.8482;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26077244 . TG T 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8541;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26077280 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6996;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26077330 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0111;AVGPOST=0.9983;RSQ=0.9362;ERATE=0.0004;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26077353 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.974;LDAF=0.0750;AVGPOST=0.9935;RSQ=0.9674;ERATE=0.0005;THETA=0.0004;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 26077356 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.995;LDAF=0.5697;AVGPOST=0.9966;RSQ=0.9951;ERATE=0.0007;THETA=0.0010;AC=1243;AN=2184 GT:DS:GL:BD 0.56913918 1 1 26077486 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8889;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26077570 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0698;AVGPOST=0.9992;RSQ=0.9952;ERATE=0.0004;THETA=0.0006;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 26077616 . ATCCT A 6217 PASS INDEL;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0257;AVGPOST=0.9987;RSQ=0.9802;ERATE=0.0003;THETA=0.0007;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 26077694 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.956;LDAF=0.0323;AVGPOST=0.9977;RSQ=0.9685;ERATE=0.0007;THETA=0.0002;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 26077695 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0031;AVGPOST=0.9991;RSQ=0.9005;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26077696 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9860;ERATE=0.0005;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26077699 . TTTCC T 323 PASS INDEL;BAVGPOST=0.995;BRSQ=0.706;LDAF=0.0162;AVGPOST=0.9827;RSQ=0.5763;ERATE=0.0060;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26078078 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5834;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26078104 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0021;AVGPOST=0.9966;RSQ=0.4337;ERATE=0.0006;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26078240 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9205;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26078260 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0088;AVGPOST=0.9996;RSQ=0.9799;ERATE=0.0004;THETA=0.0046;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26078360 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.6215;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26078632 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.733;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7427;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26078645 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7719;ERATE=0.0005;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26078671 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5132;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26078780 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0158;AVGPOST=0.9985;RSQ=0.9624;ERATE=0.0004;THETA=0.0004;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26079166 . TC T 112 PASS INDEL;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0024;AVGPOST=0.9961;RSQ=0.3904;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26079335 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26079367 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.586;LDAF=0.0039;AVGPOST=0.9956;RSQ=0.4897;ERATE=0.0012;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26079382 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.757;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5384;ERATE=0.0005;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26079439 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5569;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26079474 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0274;AVGPOST=0.9988;RSQ=0.9837;ERATE=0.0004;THETA=0.0005;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 26079555 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.6087;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26079599 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.719;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.6151;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26079606 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5854;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26079678 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0044;AVGPOST=0.9995;RSQ=0.9485;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26079811 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0111;AVGPOST=0.9997;RSQ=0.9889;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26079816 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9589;ERATE=0.0004;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26079850 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8825;ERATE=0.0007;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26080021 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26080052 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0503;AVGPOST=0.9999;RSQ=0.9988;ERATE=0.0003;THETA=0.0003;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 26080112 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26080144 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26080184 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0073;AVGPOST=0.9999;RSQ=0.9913;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26080217 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1624;AVGPOST=0.9989;RSQ=0.9969;ERATE=0.0004;THETA=0.0022;AC=355;AN=2184 GT:DS:GL:BD 0.16254579 0 1 26080259 . ATACC A 751 PASS INDEL;BAVGPOST=0.997;BRSQ=0.730;LDAF=0.0056;AVGPOST=0.9970;RSQ=0.7521;ERATE=0.0007;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26080360 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7802;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26080458 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9434;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26080482 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0047;AVGPOST=0.9994;RSQ=0.9411;ERATE=0.0004;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26080718 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0156;AVGPOST=0.9990;RSQ=0.9754;ERATE=0.0004;THETA=0.0004;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26080770 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.5585;AVGPOST=0.9975;RSQ=0.9963;ERATE=0.0004;THETA=0.0010;AC=1219;AN=2184 GT:DS:GL:BD 0.55815017 1 1 26080945 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0148;AVGPOST=0.9996;RSQ=0.9918;ERATE=0.0003;THETA=0.0005;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 26080955 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0275;AVGPOST=0.9984;RSQ=0.9781;ERATE=0.0003;THETA=0.0010;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 26080998 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26081015 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0055;AVGPOST=0.9991;RSQ=0.9319;ERATE=0.0005;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26081051 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.989;LDAF=0.6466;AVGPOST=0.9924;RSQ=0.9876;ERATE=0.0025;THETA=0.0008;AC=1412;AN=2184 GT:DS:GL:BD 0.64652014 1 1 26081167 . GC G 2108 PASS INDEL;BAVGPOST=0.988;BRSQ=0.949;LDAF=0.1308;AVGPOST=0.9927;RSQ=0.9767;ERATE=0.0005;THETA=0.0003;AC=289;AN=2184 GT:DS:GL:BD 0.13232601 0 1 26081170 rs3835655 CA C 13295 PASS INDEL;BAVGPOST=0.986;BRSQ=0.942;LDAF=0.1323;AVGPOST=0.9926;RSQ=0.9769;ERATE=0.0009;THETA=0.0006;AC=290;AN=2184 GT:DS:GL:BD 0.13278389 0 1 26081327 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8205;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26081328 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8435;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26081359 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7189;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26081472 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0017;AVGPOST=0.9973;RSQ=0.4243;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26081502 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.6732;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26081637 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0010;AVGPOST=0.9987;RSQ=0.3869;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26081680 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.6145;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26081718 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0089;AVGPOST=0.9994;RSQ=0.9678;ERATE=0.0005;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26081941 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.935;LDAF=0.0259;AVGPOST=0.9967;RSQ=0.9420;ERATE=0.0020;THETA=0.0006;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 26081973 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6745;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26081982 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.6179;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26081989 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9882;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26082026 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26082049 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0066;AVGPOST=0.9996;RSQ=0.9706;ERATE=0.0004;THETA=0.0013;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26082061 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.722;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5467;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26082122 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8303;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26082234 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6996;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26082266 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.1560;AVGPOST=0.9945;RSQ=0.9842;ERATE=0.0005;THETA=0.0007;AC=339;AN=2184 GT:DS:GL:BD 0.15521978 0 1 26082322 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0503;AVGPOST=0.9995;RSQ=0.9955;ERATE=0.0003;THETA=0.0006;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 26082330 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6493;AVGPOST=0.9981;RSQ=0.9969;ERATE=0.0005;THETA=0.0003;AC=1418;AN=2184 GT:DS:GL:BD 0.64926738 1 1 26082354 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0074;AVGPOST=0.9997;RSQ=0.9841;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26082390 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5897;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26082512 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26082529 . TAA T 18 PASS INDEL;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5706;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26082546 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.6493;AVGPOST=0.9981;RSQ=0.9964;ERATE=0.0007;THETA=0.0005;AC=1417;AN=2184 GT:DS:GL:BD 0.64880955 1 1 26082708 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0018;AVGPOST=0.9994;RSQ=0.8572;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26082812 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1356;AVGPOST=0.9973;RSQ=0.9913;ERATE=0.0005;THETA=0.0005;AC=295;AN=2184 GT:DS:GL:BD 0.13507326 0 1 26082827 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0034;AVGPOST=0.9974;RSQ=0.7190;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26082937 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0153;AVGPOST=0.9991;RSQ=0.9763;ERATE=0.0004;THETA=0.0005;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26082940 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0023;AVGPOST=0.9995;RSQ=0.9133;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26082955 rs72502173 G GA 52026 PASS INDEL;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.5686;AVGPOST=0.9947;RSQ=0.9925;ERATE=0.0008;THETA=0.0004;AC=1241;AN=2184 GT:DS:GL:BD 0.56822342 1 1 26082966 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0145;AVGPOST=0.9995;RSQ=0.9841;ERATE=0.0003;THETA=0.0050;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 26083197 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6482;AVGPOST=0.9982;RSQ=0.9966;ERATE=0.0005;THETA=0.0003;AC=1416;AN=2184 GT:DS:GL:BD 0.64835167 1 1 26083358 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.790;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26083408 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1354;AVGPOST=0.9991;RSQ=0.9969;ERATE=0.0004;THETA=0.0008;AC=296;AN=2184 GT:DS:GL:BD 0.13553114 0 1 26083419 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7603;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26083535 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6497;AVGPOST=0.9972;RSQ=0.9954;ERATE=0.0006;THETA=0.0004;AC=1420;AN=2184 GT:DS:GL:BD 0.65018314 1 1 26083609 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8774;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26083692 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7143;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26083703 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7976;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26083766 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7183;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26083777 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=1.0000;RSQ=0.9921;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26083814 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0250;AVGPOST=0.9985;RSQ=0.9740;ERATE=0.0004;THETA=0.0003;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 26083890 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0004;THETA=0.0020;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26083933 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8209;ERATE=0.0017;THETA=0.0025;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26084101 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.9037;AVGPOST=0.9994;RSQ=0.9978;ERATE=0.0003;THETA=0.0007;AC=1975;AN=2184 GT:DS:GL:BD 0.90430403 1 1 26084159 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1453;AVGPOST=0.9993;RSQ=0.9980;ERATE=0.0003;THETA=0.0003;AC=318;AN=2184 GT:DS:GL:BD 0.14560440 0 1 26084163 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26084402 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.753;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5335;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26084546 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.581;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26084695 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26084722 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9021;AVGPOST=0.9994;RSQ=0.9972;ERATE=0.0004;THETA=0.0003;AC=1971;AN=2184 GT:DS:GL:BD 0.90247256 1 1 26084797 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.1467;AVGPOST=0.9970;RSQ=0.9912;ERATE=0.0003;THETA=0.0010;AC=319;AN=2184 GT:DS:GL:BD 0.14606227 0 1 26084799 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0317;AVGPOST=0.9993;RSQ=0.9898;ERATE=0.0003;THETA=0.0005;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 26084808 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26084922 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0002;AVGPOST=0.9996;RSQ=0.1747;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26084959 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9830;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26085045 . CA C 1990 PASS INDEL;BAVGPOST=0.587;BRSQ=0.322;LDAF=0.4773;AVGPOST=0.6607;RSQ=0.4104;ERATE=0.0670;THETA=0.0004;AC=1037;AN=2184 GT:DS:GL:BD 0.47481686 0 1 26085048 rs35646892 AG A 47233 PASS INDEL;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.9028;AVGPOST=0.9972;RSQ=0.9880;ERATE=0.0006;THETA=0.0006;AC=1974;AN=2184 GT:DS:GL:BD 0.90384614 1 1 26085060 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.8284;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26085164 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26085217 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26085247 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0205;AVGPOST=0.9998;RSQ=0.9952;ERATE=0.0003;THETA=0.0004;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 26085289 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=1.0000;RSQ=0.9978;ERATE=0.0003;THETA=0.0029;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26085398 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0651;AVGPOST=0.9993;RSQ=0.9964;ERATE=0.0007;THETA=0.0003;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 26085430 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26085448 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26085584 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26085833 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.641;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6306;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26085979 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0030;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26086115 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.779;LDAF=0.0025;AVGPOST=0.9969;RSQ=0.4864;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26086189 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9819;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26086333 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0021;AVGPOST=0.9987;RSQ=0.7699;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26086349 rs10550069 TGCC T 10658 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0512;AVGPOST=0.9973;RSQ=0.9760;ERATE=0.0009;THETA=0.0006;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 26086655 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0267;AVGPOST=0.9994;RSQ=0.9898;ERATE=0.0004;THETA=0.0003;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 26086890 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9034;AVGPOST=0.9988;RSQ=0.9947;ERATE=0.0004;THETA=0.0004;AC=1974;AN=2184 GT:DS:GL:BD 0.90384614 1 1 26086895 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1353;AVGPOST=0.9981;RSQ=0.9944;ERATE=0.0004;THETA=0.0004;AC=295;AN=2184 GT:DS:GL:BD 0.13507326 0 1 26086978 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26087013 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.5543;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26087025 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.982;LDAF=0.0506;AVGPOST=0.9997;RSQ=0.9972;ERATE=0.0003;THETA=0.0005;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 26087256 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0102;AVGPOST=0.9996;RSQ=0.9812;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26087296 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7054;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26087347 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26087369 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0049;AVGPOST=0.9978;RSQ=0.8201;ERATE=0.0011;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26087610 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6526;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26087669 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0504;AVGPOST=0.9987;RSQ=0.9916;ERATE=0.0004;THETA=0.0006;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 26087695 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0268;AVGPOST=0.9993;RSQ=0.9883;ERATE=0.0004;THETA=0.0049;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 26087744 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.5583;AVGPOST=0.9961;RSQ=0.9942;ERATE=0.0008;THETA=0.0004;AC=1220;AN=2184 GT:DS:GL:BD 0.55860806 1 1 26087979 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26088153 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.951;LDAF=0.1324;AVGPOST=0.9919;RSQ=0.9742;ERATE=0.0008;THETA=0.0006;AC=289;AN=2184 GT:DS:GL:BD 0.13232601 0 1 26088178 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.821;LDAF=0.8349;AVGPOST=0.9039;RSQ=0.7480;ERATE=0.0228;THETA=0.0005;AC=1879;AN=2184 GT:DS:GL:BD 0.86034799 1 1 26088184 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.633;LDAF=0.0030;AVGPOST=0.9967;RSQ=0.5276;ERATE=0.0007;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26088208 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.945;LDAF=0.0483;AVGPOST=0.9976;RSQ=0.9792;ERATE=0.0005;THETA=0.0005;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 26088222 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.964;LDAF=0.2397;AVGPOST=0.9909;RSQ=0.9809;ERATE=0.0006;THETA=0.0005;AC=527;AN=2184 GT:DS:GL:BD 0.24130036 0 1 26088239 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.952;LDAF=0.1319;AVGPOST=0.9925;RSQ=0.9762;ERATE=0.0007;THETA=0.0007;AC=289;AN=2184 GT:DS:GL:BD 0.13232601 0 1 26088347 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0281;AVGPOST=0.9955;RSQ=0.9333;ERATE=0.0006;THETA=0.0028;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 26088599 . CTTTCT C 42708 PASS INDEL;BAVGPOST=0.953;BRSQ=0.817;LDAF=0.8590;AVGPOST=0.9394;RSQ=0.8106;ERATE=0.0105;THETA=0.0004;AC=1921;AN=2184 GT:DS:GL:BD 0.87957877 1 1 26088616 . TTC T 41486 PASS INDEL;BAVGPOST=0.931;BRSQ=0.784;LDAF=0.8139;AVGPOST=0.9276;RSQ=0.8230;ERATE=0.0009;THETA=0.0003;AC=1821;AN=2184 GT:DS:GL:BD 0.83379120 1 1 26088617 rs71014386 TC T 39324 PASS INDEL;BAVGPOST=0.928;BRSQ=0.779;LDAF=0.8037;AVGPOST=0.9181;RSQ=0.8041;ERATE=0.0051;THETA=0.0002;AC=1800;AN=2184 GT:DS:GL:BD 0.82417583 1 1 26088680 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.730;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4400;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26088681 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0545;AVGPOST=0.9954;RSQ=0.9649;ERATE=0.0008;THETA=0.0005;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 26088802 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26088874 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0038;AVGPOST=0.9998;RSQ=0.9710;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26088915 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5563;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26089031 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9042;AVGPOST=0.9992;RSQ=0.9962;ERATE=0.0004;THETA=0.0004;AC=1976;AN=2184 GT:DS:GL:BD 0.90476191 1 1 26089129 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0505;AVGPOST=0.9994;RSQ=0.9943;ERATE=0.0003;THETA=0.0003;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 26089251 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2700;AVGPOST=0.9944;RSQ=0.9903;ERATE=0.0009;THETA=0.0005;AC=589;AN=2184 GT:DS:GL:BD 0.26968864 0 1 26089404 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.6203;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26089511 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.518;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4467;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26089700 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.735;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5829;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26089732 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0510;AVGPOST=0.9981;RSQ=0.9841;ERATE=0.0007;THETA=0.0008;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 26089756 . C CA 38 PASS INDEL;BAVGPOST=0.992;BRSQ=0.431;LDAF=0.0138;AVGPOST=0.9793;RSQ=0.4027;ERATE=0.0045;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26089806 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0321;AVGPOST=0.9989;RSQ=0.9852;ERATE=0.0004;THETA=0.0004;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 26089861 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6475;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26089976 . TCAAA T 47 PASS INDEL;BAVGPOST=0.989;BRSQ=0.432;LDAF=0.0203;AVGPOST=0.9790;RSQ=0.5851;ERATE=0.0020;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26090072 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.9044;AVGPOST=0.9999;RSQ=0.9993;ERATE=0.0003;THETA=0.0018;AC=1976;AN=2184 GT:DS:GL:BD 0.90476191 1 1 26090173 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.663;LDAF=0.0108;AVGPOST=0.9904;RSQ=0.6587;ERATE=0.0081;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26090195 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.7283;ERATE=0.0004;THETA=0.0039;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26090285 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1070;AVGPOST=0.9998;RSQ=0.9990;ERATE=0.0003;THETA=0.0003;AC=234;AN=2184 GT:DS:GL:BD 0.10714286 0 1 26090325 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26090353 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26090359 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0018;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26090373 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26090433 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26090473 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0091;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26090493 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0119;AVGPOST=1.0000;RSQ=0.9983;ERATE=0.0006;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26090529 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.649;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.5686;ERATE=0.0008;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26090589 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0110;AVGPOST=1.0000;RSQ=0.9981;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26090663 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26090682 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26090703 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26090766 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0114;AVGPOST=0.9975;RSQ=0.9177;ERATE=0.0003;THETA=0.0011;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26090809 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0268;AVGPOST=0.9994;RSQ=0.9898;ERATE=0.0004;THETA=0.0006;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 26090898 . A AT 47 PASS INDEL;BAVGPOST=0.997;BRSQ=0.538;LDAF=0.0064;AVGPOST=0.9907;RSQ=0.4249;ERATE=0.0020;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26090934 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.600;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.3493;ERATE=0.0007;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26090964 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0108;AVGPOST=0.9974;RSQ=0.9089;ERATE=0.0004;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26091003 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0274;AVGPOST=0.9983;RSQ=0.9743;ERATE=0.0004;THETA=0.0003;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 26091017 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1078;AVGPOST=0.9982;RSQ=0.9936;ERATE=0.0005;THETA=0.0005;AC=235;AN=2184 GT:DS:GL:BD 0.10760073 0 1 26091028 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.970;LDAF=0.5528;AVGPOST=0.9845;RSQ=0.9785;ERATE=0.0028;THETA=0.0004;AC=1216;AN=2184 GT:DS:GL:BD 0.55677658 1 1 26091129 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0671;AVGPOST=0.9974;RSQ=0.9813;ERATE=0.0006;THETA=0.0009;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 26091232 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.737;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7282;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26091315 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0503;AVGPOST=0.9985;RSQ=0.9861;ERATE=0.0004;THETA=0.0008;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 26091438 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26091495 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.754;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7351;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26091538 . C CA 77 PASS INDEL;BAVGPOST=0.983;BRSQ=0.570;LDAF=0.0390;AVGPOST=0.9559;RSQ=0.5213;ERATE=0.0112;THETA=0.0007;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 26091556 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.548;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8440;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26091774 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0499;AVGPOST=0.9998;RSQ=0.9983;ERATE=0.0003;THETA=0.0003;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 26091837 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1353;AVGPOST=0.9979;RSQ=0.9935;ERATE=0.0004;THETA=0.0004;AC=294;AN=2184 GT:DS:GL:BD 0.13461539 0 1 26091881 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.702;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4611;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26091905 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.802;LDAF=0.0127;AVGPOST=0.9952;RSQ=0.8554;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26091907 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8425;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26091923 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.721;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8096;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26091930 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6660;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26092014 . CTG C 1374 PASS INDEL;BAVGPOST=0.994;BRSQ=0.796;LDAF=0.0100;AVGPOST=0.9971;RSQ=0.8695;ERATE=0.0008;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26092248 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.994;LDAF=0.5706;AVGPOST=0.9966;RSQ=0.9954;ERATE=0.0005;THETA=0.0008;AC=1244;AN=2184 GT:DS:GL:BD 0.56959707 1 1 26092351 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.8827;ERATE=0.0005;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26092404 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.851;LDAF=0.0076;AVGPOST=0.9980;RSQ=0.8880;ERATE=0.0004;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26092615 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.754;LDAF=0.0079;AVGPOST=0.9932;RSQ=0.6511;ERATE=0.0017;THETA=0.0057;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26092652 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.9067;AVGPOST=0.9975;RSQ=0.9888;ERATE=0.0006;THETA=0.0005;AC=1983;AN=2184 GT:DS:GL:BD 0.90796703 1 1 26092724 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0052;AVGPOST=0.9984;RSQ=0.8652;ERATE=0.0004;THETA=0.0018;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26092812 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26092837 . T TG 474 PASS INDEL;BAVGPOST=0.998;BRSQ=0.882;LDAF=0.0178;AVGPOST=0.9868;RSQ=0.7066;ERATE=0.0024;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 26092935 . C CT 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4776;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26093014 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5148;ERATE=0.0003;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26093118 . GA G 978 PASS INDEL;BAVGPOST=0.886;BRSQ=0.384;LDAF=0.1597;AVGPOST=0.8212;RSQ=0.4231;ERATE=0.0058;THETA=0.0005;AC=192;AN=2184 GT:DS:GL:BD 0.08791209 0 1 26093119 . AC A 10846 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0616;AVGPOST=0.9965;RSQ=0.9809;ERATE=0.0004;THETA=0.0014;AC=131;AN=2184 GT:DS:GL:BD 0.05998169 0 1 26093176 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7047;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26093218 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.729;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6552;ERATE=0.0005;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26093226 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5140;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26093232 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7787;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26093251 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26093255 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.910;LDAF=0.0180;AVGPOST=0.9984;RSQ=0.9617;ERATE=0.0005;THETA=0.0005;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 26093282 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26093352 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0007;AVGPOST=0.9989;RSQ=0.3584;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26093509 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.581;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3526;ERATE=0.0006;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26093533 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0521;AVGPOST=0.9978;RSQ=0.9821;ERATE=0.0006;THETA=0.0002;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 26093714 . A ACACACACC 1727 PASS INDEL;BAVGPOST=0.948;BRSQ=0.367;LDAF=0.0823;AVGPOST=0.9234;RSQ=0.5991;ERATE=0.0086;THETA=0.0005;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 26093750 rs112843174 TCA T 152 PASS INDEL;BAVGPOST=0.980;BRSQ=0.456;LDAF=0.0433;AVGPOST=0.9418;RSQ=0.4243;ERATE=0.0070;THETA=0.0004;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 26093753 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.792;LDAF=0.1071;AVGPOST=0.9204;RSQ=0.6830;ERATE=0.0151;THETA=0.0004;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 26093885 . CACA C 4702 PASS INDEL;BAVGPOST=0.724;BRSQ=0.492;LDAF=0.3991;AVGPOST=0.7450;RSQ=0.5763;ERATE=0.0184;THETA=0.0021;AC=921;AN=2184 GT:DS:GL:BD 0.42170331 0 1 26094034 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0043;AVGPOST=0.9978;RSQ=0.7999;ERATE=0.0005;THETA=0.0019;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26094038 . TCA T 152 PASS INDEL;BAVGPOST=0.999;BRSQ=0.587;LDAF=0.0032;AVGPOST=0.9961;RSQ=0.5581;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26094053 . TCA T 5814 PASS INDEL;BAVGPOST=0.996;BRSQ=0.955;LDAF=0.0434;AVGPOST=0.9938;RSQ=0.9454;ERATE=0.0012;THETA=0.0005;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 26094116 . TCA T 29594 PASS INDEL;BAVGPOST=0.919;BRSQ=0.866;LDAF=0.5234;AVGPOST=0.9007;RSQ=0.8559;ERATE=0.0207;THETA=0.0006;AC=1190;AN=2184 GT:DS:GL:BD 0.54487181 1 1 26094201 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.952;BRSQ=0.752;LDAF=0.1215;AVGPOST=0.9261;RSQ=0.7247;ERATE=0.0301;THETA=0.0016;AC=209;AN=2184 GT:DS:GL:BD 0.09569597 0 1 26094218 . TCA T 70 PASS INDEL;BAVGPOST=0.998;BRSQ=0.624;LDAF=0.0033;AVGPOST=0.9958;RSQ=0.5290;ERATE=0.0011;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26094257 . A AC 122466 PASS INDEL;BAVGPOST=0.994;BRSQ=0.971;LDAF=0.9071;AVGPOST=0.9938;RSQ=0.9732;ERATE=0.0005;THETA=0.0011;AC=1983;AN=2184 GT:DS:GL:BD 0.90796703 1 1 26094755 . CACATCACAT C 52033 PASS INDEL;BAVGPOST=0.910;BRSQ=0.325;LDAF=0.8758;AVGPOST=0.8301;RSQ=0.3521;ERATE=0.0213;THETA=0.0017;AC=2047;AN=2184 GT:DS:GL:BD 0.93727106 1 1 26094827 . TCACA T 546 PASS INDEL;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0063;AVGPOST=0.9982;RSQ=0.8954;ERATE=0.0006;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26094917 . A AT 315 PASS INDEL;BAVGPOST=0.993;BRSQ=0.784;LDAF=0.0264;AVGPOST=0.9767;RSQ=0.6256;ERATE=0.0098;THETA=0.0008;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 26094953 . TCA T 615 PASS INDEL;BAVGPOST=0.997;BRSQ=0.673;LDAF=0.0095;AVGPOST=0.9887;RSQ=0.4859;ERATE=0.0033;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26094969 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.727;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6714;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26095008 . CACAT C 275 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0058;AVGPOST=0.9990;RSQ=0.9183;ERATE=0.0005;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26095064 . CA C 44226 PASS INDEL;BAVGPOST=0.928;BRSQ=0.881;LDAF=0.5164;AVGPOST=0.9078;RSQ=0.8668;ERATE=0.0194;THETA=0.0005;AC=1160;AN=2184 GT:DS:GL:BD 0.53113556 1 1 26095080 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0202;AVGPOST=0.9986;RSQ=0.9671;ERATE=0.0005;THETA=0.0006;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 26095165 . CACAT C 540 PASS INDEL;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0040;AVGPOST=0.9985;RSQ=0.8401;ERATE=0.0005;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26095260 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.973;LDAF=0.1191;AVGPOST=0.9962;RSQ=0.9871;ERATE=0.0004;THETA=0.0005;AC=260;AN=2184 GT:DS:GL:BD 0.11904762 0 1 26095294 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2731;AVGPOST=0.9944;RSQ=0.9895;ERATE=0.0007;THETA=0.0053;AC=597;AN=2184 GT:DS:GL:BD 0.27335164 0 1 26095403 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6857;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26095427 . TAC T 82 PASS INDEL;BAVGPOST=0.993;BRSQ=0.673;LDAF=0.0163;AVGPOST=0.9847;RSQ=0.6084;ERATE=0.0063;THETA=0.0008;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26095565 . CCACA C 85 PASS INDEL;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7209;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26095683 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8869;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26095840 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8516;ERATE=0.0008;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26095911 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.720;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5179;ERATE=0.0006;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26095918 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26095953 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.960;LDAF=0.0321;AVGPOST=0.9985;RSQ=0.9808;ERATE=0.0005;THETA=0.0010;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 26095976 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.988;LDAF=0.1528;AVGPOST=0.9970;RSQ=0.9913;ERATE=0.0009;THETA=0.0003;AC=334;AN=2184 GT:DS:GL:BD 0.15293041 0 1 26095979 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5072;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26095992 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6228;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26096041 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6107;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26096132 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0253;AVGPOST=0.9974;RSQ=0.9569;ERATE=0.0004;THETA=0.0007;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 26096234 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.987;LDAF=0.1691;AVGPOST=0.9966;RSQ=0.9913;ERATE=0.0005;THETA=0.0008;AC=370;AN=2184 GT:DS:GL:BD 0.16941392 0 1 26096278 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0045;AVGPOST=0.9983;RSQ=0.8409;ERATE=0.0004;THETA=0.0076;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26096298 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.688;LDAF=0.0037;AVGPOST=0.9937;RSQ=0.3698;ERATE=0.0009;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26096485 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.864;LDAF=0.0058;AVGPOST=0.9968;RSQ=0.7789;ERATE=0.0006;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26096522 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7777;ERATE=0.0003;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26096959 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26097060 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7571;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26097302 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0061;AVGPOST=0.9981;RSQ=0.8774;ERATE=0.0004;THETA=0.0073;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26097358 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0066;AVGPOST=0.9996;RSQ=0.9751;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26097489 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0347;AVGPOST=0.9991;RSQ=0.9885;ERATE=0.0006;THETA=0.0004;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 26097550 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.712;LDAF=0.0110;AVGPOST=0.9917;RSQ=0.7032;ERATE=0.0009;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26097606 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26097620 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0018;AVGPOST=0.9988;RSQ=0.7002;ERATE=0.0007;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26097731 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.987;LDAF=0.4586;AVGPOST=0.9894;RSQ=0.9833;ERATE=0.0013;THETA=0.0022;AC=999;AN=2184 GT:DS:GL:BD 0.45741758 0 1 26097809 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5721;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26097838 . CACTT C 144 PASS INDEL;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0032;AVGPOST=0.9969;RSQ=0.6628;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26097908 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0027;AVGPOST=0.9988;RSQ=0.8251;ERATE=0.0005;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26098045 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9604;ERATE=0.0009;THETA=0.0011;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26098103 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0338;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 26098104 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26098107 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6022;AVGPOST=0.9992;RSQ=0.9987;ERATE=0.0004;THETA=0.0008;AC=1315;AN=2184 GT:DS:GL:BD 0.60210621 1 1 26098171 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26098333 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.8827;AVGPOST=0.9992;RSQ=0.9974;ERATE=0.0003;THETA=0.0007;AC=1929;AN=2184 GT:DS:GL:BD 0.88324177 1 1 26098350 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2357;AVGPOST=0.9985;RSQ=0.9971;ERATE=0.0004;THETA=0.0005;AC=515;AN=2184 GT:DS:GL:BD 0.23580585 0 1 26098516 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26098641 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6200;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26098710 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6932;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26098794 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5617;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26098798 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.816;LDAF=0.0032;AVGPOST=0.9984;RSQ=0.8052;ERATE=0.0006;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26098946 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.877;LDAF=0.0115;AVGPOST=0.9970;RSQ=0.8849;ERATE=0.0004;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26098954 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0004;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26099244 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0123;AVGPOST=0.9984;RSQ=0.9453;ERATE=0.0003;THETA=0.0029;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26099328 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.958;LDAF=0.0276;AVGPOST=0.9965;RSQ=0.9517;ERATE=0.0004;THETA=0.0004;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 26099397 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.6013;AVGPOST=0.9952;RSQ=0.9929;ERATE=0.0007;THETA=0.0008;AC=1312;AN=2184 GT:DS:GL:BD 0.60073262 1 1 26099570 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6834;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26099812 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0163;AVGPOST=0.9992;RSQ=0.9794;ERATE=0.0003;THETA=0.0002;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 26099860 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0147;AVGPOST=0.9995;RSQ=0.9850;ERATE=0.0004;THETA=0.0002;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 26099892 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.765;LDAF=0.0064;AVGPOST=0.9968;RSQ=0.8036;ERATE=0.0004;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26100164 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1472;AVGPOST=0.9965;RSQ=0.9905;ERATE=0.0004;THETA=0.0004;AC=321;AN=2184 GT:DS:GL:BD 0.14697802 0 1 26100205 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6252;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26100231 . C CT 110 PASS INDEL;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.6712;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26100242 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7193;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26100373 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5746;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26100492 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.5241;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26100706 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0025;AVGPOST=0.9977;RSQ=0.6692;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26100758 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.664;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6710;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26100882 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0158;AVGPOST=0.9995;RSQ=0.9883;ERATE=0.0003;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 26100916 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0071;AVGPOST=0.9986;RSQ=0.9198;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26100944 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6021;AVGPOST=0.9969;RSQ=0.9955;ERATE=0.0007;THETA=0.0004;AC=1313;AN=2184 GT:DS:GL:BD 0.60119045 1 1 26101007 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.736;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5252;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26101067 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.731;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4046;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26101121 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8247;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26101163 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6006;AVGPOST=0.9977;RSQ=0.9963;ERATE=0.0006;THETA=0.0012;AC=1310;AN=2184 GT:DS:GL:BD 0.59981686 1 1 26101354 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.970;LDAF=0.0670;AVGPOST=0.9982;RSQ=0.9888;ERATE=0.0003;THETA=0.0008;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 26101365 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6512;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26101383 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7836;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26101393 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.6296;ERATE=0.0004;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26101394 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26101408 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9558;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26101577 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0311;AVGPOST=0.9990;RSQ=0.9908;ERATE=0.0003;THETA=0.0006;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 26101594 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8394;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26101691 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0034;AVGPOST=0.9991;RSQ=0.9027;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26101723 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.603;LDAF=0.0053;AVGPOST=0.9974;RSQ=0.8057;ERATE=0.0006;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26102131 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0044;AVGPOST=0.9974;RSQ=0.7984;ERATE=0.0007;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26102232 rs35990149 GC G 8046 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0687;AVGPOST=0.9969;RSQ=0.9799;ERATE=0.0006;THETA=0.0015;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 26102268 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8987;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26102348 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0026;AVGPOST=0.9974;RSQ=0.6455;ERATE=0.0010;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26102386 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8266;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26102684 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.666;LDAF=0.0017;AVGPOST=0.9978;RSQ=0.4330;ERATE=0.0008;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26102695 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.751;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8136;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26102764 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0066;AVGPOST=0.9997;RSQ=0.9794;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26102809 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.578;LDAF=0.0028;AVGPOST=0.9973;RSQ=0.5862;ERATE=0.0008;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26102899 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.573;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.3895;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26102903 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0105;AVGPOST=0.9987;RSQ=0.9518;ERATE=0.0003;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26102910 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.732;LDAF=0.0076;AVGPOST=0.9974;RSQ=0.8645;ERATE=0.0006;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26103025 . C CAA 9328 PASS INDEL;BAVGPOST=0.997;BRSQ=0.962;LDAF=0.0353;AVGPOST=0.9945;RSQ=0.9381;ERATE=0.0004;THETA=0.0005;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 26103148 . AC A 5394 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0330;AVGPOST=0.9995;RSQ=0.9930;ERATE=0.0003;THETA=0.0004;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 26103237 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9302;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26103356 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26103393 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0315;AVGPOST=0.9998;RSQ=0.9965;ERATE=0.0003;THETA=0.0007;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 26103664 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26103714 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0078;AVGPOST=0.9997;RSQ=0.9833;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26103872 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.393;LDAF=0.0020;AVGPOST=0.9969;RSQ=0.3668;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26103898 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0671;AVGPOST=0.9989;RSQ=0.9930;ERATE=0.0003;THETA=0.0010;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 26104051 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0342;AVGPOST=0.9993;RSQ=0.9915;ERATE=0.0004;THETA=0.0004;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 26104092 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0124;AVGPOST=0.9980;RSQ=0.9364;ERATE=0.0005;THETA=0.0008;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26104164 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0047;AVGPOST=0.9996;RSQ=0.9588;ERATE=0.0003;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26104204 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9081;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26104703 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26104773 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9562;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26104843 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0011;AVGPOST=0.9998;RSQ=0.8122;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26104885 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26104973 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1395;AVGPOST=0.9989;RSQ=0.9964;ERATE=0.0004;THETA=0.0008;AC=304;AN=2184 GT:DS:GL:BD 0.13919415 0 1 26105269 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.949;LDAF=0.0151;AVGPOST=0.9985;RSQ=0.9588;ERATE=0.0003;THETA=0.0022;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 26105340 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0040;AVGPOST=0.9988;RSQ=0.8801;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26105714 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.530;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4948;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26105877 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0039;AVGPOST=0.9977;RSQ=0.7816;ERATE=0.0005;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26105901 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.9016;ERATE=0.0003;THETA=0.0023;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26105936 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0036;AVGPOST=0.9992;RSQ=0.9163;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26105949 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0157;AVGPOST=0.9998;RSQ=0.9934;ERATE=0.0003;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 26105961 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26106030 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.953;LDAF=0.0272;AVGPOST=0.9942;RSQ=0.9222;ERATE=0.0004;THETA=0.0006;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 26106049 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5375;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26106232 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.6552;AVGPOST=0.9955;RSQ=0.9916;ERATE=0.0005;THETA=0.0006;AC=1431;AN=2184 GT:DS:GL:BD 0.65521979 1 1 26106304 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7163;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26106351 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5805;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26106440 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0037;AVGPOST=0.9989;RSQ=0.9045;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26106582 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6610;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26106597 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26106615 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9765;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26106700 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.923;LDAF=0.0119;AVGPOST=0.9985;RSQ=0.9468;ERATE=0.0004;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26106769 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1391;AVGPOST=0.9951;RSQ=0.9851;ERATE=0.0004;THETA=0.0005;AC=303;AN=2184 GT:DS:GL:BD 0.13873626 0 1 26106820 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7343;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26106863 . TG T 215 PASS INDEL;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5266;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26106986 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9865;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26107005 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6723;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26107058 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0157;AVGPOST=0.9995;RSQ=0.9873;ERATE=0.0003;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 26107076 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9865;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26107091 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0064;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26107167 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0005;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26107214 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26107219 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0318;AVGPOST=0.9993;RSQ=0.9912;ERATE=0.0004;THETA=0.0006;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 26107321 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.9023;AVGPOST=0.9992;RSQ=0.9970;ERATE=0.0003;THETA=0.0005;AC=1972;AN=2184 GT:DS:GL:BD 0.90293038 1 1 26107375 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0017;THETA=0.0022;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26107395 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=1.0000;RSQ=0.9932;ERATE=0.0003;THETA=0.0028;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26107435 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26107481 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26107682 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9585;ERATE=0.0003;THETA=0.0012;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26107688 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8670;AVGPOST=0.9978;RSQ=0.9935;ERATE=0.0005;THETA=0.0005;AC=1895;AN=2184 GT:DS:GL:BD 0.86767399 1 1 26107727 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.772;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9582;ERATE=0.0003;THETA=0.0064;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26107875 . A AG 497 PASS INDEL;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0042;AVGPOST=0.9990;RSQ=0.8997;ERATE=0.0004;THETA=0.0024;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26107904 . AGCACCACGCAG A 970 PASS INDEL;BAVGPOST=0.990;BRSQ=0.602;LDAF=0.0115;AVGPOST=0.9878;RSQ=0.6211;ERATE=0.0007;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26107946 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26107976 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0048;AVGPOST=0.9978;RSQ=0.8355;ERATE=0.0004;THETA=0.0053;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26108020 . AC A 33 PASS INDEL;BAVGPOST=0.998;BRSQ=0.426;LDAF=0.0020;AVGPOST=0.9969;RSQ=0.3229;ERATE=0.0009;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26108079 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0020;AVGPOST=0.9991;RSQ=0.8077;ERATE=0.0004;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26108254 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4751;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26108286 . A AC 184 PASS INDEL;BAVGPOST=0.999;BRSQ=0.701;LDAF=0.0029;AVGPOST=0.9970;RSQ=0.5434;ERATE=0.0010;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26108394 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.8330;AVGPOST=0.9957;RSQ=0.9883;ERATE=0.0007;THETA=0.0007;AC=1820;AN=2184 GT:DS:GL:BD 0.83333331 1 1 26108446 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.672;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6550;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26108497 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.782;LDAF=0.0027;AVGPOST=0.9981;RSQ=0.7064;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26108554 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.972;LDAF=0.6495;AVGPOST=0.9846;RSQ=0.9762;ERATE=0.0010;THETA=0.0034;AC=1421;AN=2184 GT:DS:GL:BD 0.65064102 1 1 26108577 . AG A 12415 PASS INDEL;BAVGPOST=0.870;BRSQ=0.790;LDAF=0.5593;AVGPOST=0.8820;RSQ=0.8370;ERATE=0.0135;THETA=0.0003;AC=1278;AN=2184 GT:DS:GL:BD 0.58516484 1 1 26108627 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9607;ERATE=0.0004;THETA=0.0013;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26108675 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0004;THETA=0.0026;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26108706 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5797;AVGPOST=0.9977;RSQ=0.9965;ERATE=0.0006;THETA=0.0011;AC=1266;AN=2184 GT:DS:GL:BD 0.57967031 1 1 26108745 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0459;AVGPOST=0.9994;RSQ=0.9944;ERATE=0.0004;THETA=0.0028;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 26108856 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0256;AVGPOST=0.9998;RSQ=0.9966;ERATE=0.0003;THETA=0.0008;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 26109050 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26109124 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26109237 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6266;AVGPOST=0.9998;RSQ=0.9997;ERATE=0.0003;THETA=0.0018;AC=1368;AN=2184 GT:DS:GL:BD 0.62637365 1 1 26109294 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9797;ERATE=0.0004;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26109307 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6269;AVGPOST=0.9997;RSQ=0.9994;ERATE=0.0003;THETA=0.0013;AC=1369;AN=2184 GT:DS:GL:BD 0.62683153 1 1 26109416 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9524;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26109425 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9547;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26109446 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9895;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26109455 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9421;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26109483 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9346;ERATE=0.0004;THETA=0.0021;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26109489 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0358;AVGPOST=0.9995;RSQ=0.9934;ERATE=0.0004;THETA=0.0004;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 26109503 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26109637 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8473;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26109806 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7182;ERATE=0.0005;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26109813 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5953;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26109818 . GA G 289 PASS INDEL;BAVGPOST=0.998;BRSQ=0.729;LDAF=0.0044;AVGPOST=0.9957;RSQ=0.5571;ERATE=0.0005;THETA=0.0042;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26109850 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.976;LDAF=0.0199;AVGPOST=0.9993;RSQ=0.9842;ERATE=0.0004;THETA=0.0005;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 26109891 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8599;ERATE=0.0008;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26109892 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26109967 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26110002 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26110065 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5858;AVGPOST=0.9989;RSQ=0.9984;ERATE=0.0003;THETA=0.0038;AC=1278;AN=2184 GT:DS:GL:BD 0.58516484 1 1 26110143 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6348;AVGPOST=0.9995;RSQ=0.9992;ERATE=0.0005;THETA=0.0044;AC=1386;AN=2184 GT:DS:GL:BD 0.63461536 1 1 26110150 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26110151 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0256;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0088;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 26110208 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26110236 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.938;LDAF=0.0103;AVGPOST=0.9991;RSQ=0.9664;ERATE=0.0005;THETA=0.0040;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26110295 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.749;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.6000;ERATE=0.0007;THETA=0.0031;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26110298 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.970;LDAF=0.0344;AVGPOST=0.9973;RSQ=0.9714;ERATE=0.0004;THETA=0.0055;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 26110309 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0048;AVGPOST=0.9996;RSQ=0.9651;ERATE=0.0003;THETA=0.0128;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26110321 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0073;AVGPOST=0.9998;RSQ=0.9896;ERATE=0.0003;THETA=0.0077;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26110455 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0094;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26110597 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0025;AVGPOST=0.9993;RSQ=0.8809;ERATE=0.0005;THETA=0.0127;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26110630 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9268;ERATE=0.0003;THETA=0.0068;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26110753 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5372;ERATE=0.0003;THETA=0.0139;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26110755 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5048;ERATE=0.0003;THETA=0.0178;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26110819 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0201;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26110886 . ATTATTGTAATG A 833 PASS INDEL;BAVGPOST=0.999;BRSQ=0.731;LDAF=0.0032;AVGPOST=0.9963;RSQ=0.5401;ERATE=0.0006;THETA=0.0237;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26110901 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.742;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6088;ERATE=0.0004;THETA=0.0091;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26110941 . AT A 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.772;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4928;ERATE=0.0006;THETA=0.0106;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26110948 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7891;ERATE=0.0003;THETA=0.0078;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26110957 . T TG 8 PASS INDEL;BAVGPOST=0.999;BRSQ=0.638;LDAF=0.0023;AVGPOST=0.9974;RSQ=0.5309;ERATE=0.0005;THETA=0.0153;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26110994 . TACC T 204 PASS INDEL;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0075;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26111034 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5195;ERATE=0.0004;THETA=0.0155;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26111043 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0172;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26111048 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0003;THETA=0.0092;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26111079 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.970;LDAF=0.0272;AVGPOST=0.9968;RSQ=0.9565;ERATE=0.0003;THETA=0.0102;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 26111080 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0034;AVGPOST=0.9984;RSQ=0.8204;ERATE=0.0013;THETA=0.0036;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26111223 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.7993;ERATE=0.0005;THETA=0.0103;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26111224 . G GT 7372 PASS INDEL;BAVGPOST=0.991;BRSQ=0.911;LDAF=0.0382;AVGPOST=0.9874;RSQ=0.8837;ERATE=0.0018;THETA=0.0165;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 26111232 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.653;LDAF=0.0036;AVGPOST=0.9965;RSQ=0.6313;ERATE=0.0005;THETA=0.0084;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26111270 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8261;ERATE=0.0003;THETA=0.0162;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26111303 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5086;ERATE=0.0006;THETA=0.0098;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26111326 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.731;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0004;THETA=0.0193;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26111334 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.858;LDAF=0.0429;AVGPOST=0.9876;RSQ=0.8810;ERATE=0.0037;THETA=0.0153;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 26111375 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7400;ERATE=0.0003;THETA=0.0308;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26111378 . AAG A 2027 PASS INDEL;BAVGPOST=0.995;BRSQ=0.866;LDAF=0.0129;AVGPOST=0.9945;RSQ=0.8340;ERATE=0.0007;THETA=0.0203;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26111443 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5758;ERATE=0.0004;THETA=0.0094;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26111485 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0061;AVGPOST=0.9996;RSQ=0.9751;ERATE=0.0004;THETA=0.0066;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26111493 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.905;LDAF=0.0185;AVGPOST=0.9936;RSQ=0.8666;ERATE=0.0014;THETA=0.0158;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 26111620 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0096;AVGPOST=0.9957;RSQ=0.8199;ERATE=0.0004;THETA=0.0142;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26111743 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.857;BRSQ=0.779;LDAF=0.5053;AVGPOST=0.8448;RSQ=0.7895;ERATE=0.0104;THETA=0.0121;AC=1110;AN=2184 GT:DS:GL:BD 0.50824177 1 1 26111751 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.754;LDAF=0.0027;AVGPOST=0.9978;RSQ=0.6732;ERATE=0.0005;THETA=0.0260;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26111938 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.517;LDAF=0.0096;AVGPOST=0.9887;RSQ=0.5130;ERATE=0.0033;THETA=0.0117;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26111954 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.715;LDAF=0.0020;AVGPOST=0.9977;RSQ=0.5322;ERATE=0.0005;THETA=0.0101;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26111970 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.813;LDAF=0.0449;AVGPOST=0.9809;RSQ=0.8259;ERATE=0.0021;THETA=0.0097;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 26112036 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5756;ERATE=0.0004;THETA=0.0066;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26112037 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.7861;ERATE=0.0004;THETA=0.0142;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26112053 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.788;LDAF=0.0049;AVGPOST=0.9977;RSQ=0.8064;ERATE=0.0018;THETA=0.0023;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26112072 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0003;THETA=0.0056;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26112108 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0124;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26112111 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.836;LDAF=0.0142;AVGPOST=0.9947;RSQ=0.8342;ERATE=0.0008;THETA=0.0177;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26112130 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.874;LDAF=0.0389;AVGPOST=0.9864;RSQ=0.8768;ERATE=0.0004;THETA=0.0124;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 26112133 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7297;ERATE=0.0004;THETA=0.0097;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26112154 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.734;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.6844;ERATE=0.0004;THETA=0.0030;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26112244 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.931;LDAF=0.0150;AVGPOST=0.9979;RSQ=0.9391;ERATE=0.0004;THETA=0.0011;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 26112352 . T TA 996 PASS INDEL;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0034;AVGPOST=0.9986;RSQ=0.8587;ERATE=0.0005;THETA=0.0022;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26112371 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.825;LDAF=0.0246;AVGPOST=0.9900;RSQ=0.8274;ERATE=0.0005;THETA=0.0028;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 26112385 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6195;ERATE=0.0004;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26112545 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.734;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7903;ERATE=0.0005;THETA=0.0081;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26112625 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8259;ERATE=0.0003;THETA=0.0067;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26112631 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0019;AVGPOST=0.9992;RSQ=0.8286;ERATE=0.0006;THETA=0.0040;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26112693 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0068;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26112700 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26112747 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0126;AVGPOST=0.9989;RSQ=0.9717;ERATE=0.0003;THETA=0.0169;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26113191 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0004;THETA=0.0189;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26113211 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0036;AVGPOST=0.9993;RSQ=0.9090;ERATE=0.0007;THETA=0.0070;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26113304 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0123;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26113368 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0127;AVGPOST=0.9989;RSQ=0.9674;ERATE=0.0004;THETA=0.0034;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26113458 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5558;ERATE=0.0004;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26113770 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0203;AVGPOST=0.9971;RSQ=0.9496;ERATE=0.0004;THETA=0.0051;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 26113777 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7234;ERATE=0.0004;THETA=0.0073;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26114283 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0004;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26114310 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.974;LDAF=0.0657;AVGPOST=0.9946;RSQ=0.9687;ERATE=0.0007;THETA=0.0120;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 26114435 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.910;LDAF=0.0122;AVGPOST=0.9964;RSQ=0.8798;ERATE=0.0004;THETA=0.0055;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26114566 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8858;ERATE=0.0004;THETA=0.0056;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26114637 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0047;AVGPOST=0.9979;RSQ=0.8260;ERATE=0.0004;THETA=0.0020;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26114643 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8156;ERATE=0.0004;THETA=0.0085;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26114724 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8344;ERATE=0.0004;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26114791 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7928;ERATE=0.0003;THETA=0.0046;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26114919 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.848;LDAF=0.0046;AVGPOST=0.9990;RSQ=0.9238;ERATE=0.0005;THETA=0.0065;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26115074 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0084;AVGPOST=0.9996;RSQ=0.9771;ERATE=0.0003;THETA=0.0012;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26115283 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.825;LDAF=0.0143;AVGPOST=0.9910;RSQ=0.7490;ERATE=0.0007;THETA=0.0017;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26115403 . GTGCA G 7224 PASS INDEL;BAVGPOST=0.961;BRSQ=0.689;LDAF=0.0606;AVGPOST=0.9603;RSQ=0.7660;ERATE=0.0013;THETA=0.0056;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 26115439 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0029;AVGPOST=0.9973;RSQ=0.5977;ERATE=0.0004;THETA=0.0022;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26115450 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.696;LDAF=0.0079;AVGPOST=0.9944;RSQ=0.7440;ERATE=0.0006;THETA=0.0027;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26115476 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0118;AVGPOST=0.9981;RSQ=0.9285;ERATE=0.0004;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26115505 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6617;ERATE=0.0004;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26115515 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0209;AVGPOST=0.9979;RSQ=0.9601;ERATE=0.0005;THETA=0.0028;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 26115544 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.930;LDAF=0.0290;AVGPOST=0.9883;RSQ=0.8512;ERATE=0.0005;THETA=0.0039;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 26115701 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9073;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26115810 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0097;AVGPOST=0.9988;RSQ=0.9485;ERATE=0.0006;THETA=0.0029;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26115950 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0109;AVGPOST=0.9993;RSQ=0.9699;ERATE=0.0004;THETA=0.0057;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26116076 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.972;LDAF=0.8046;AVGPOST=0.9915;RSQ=0.9799;ERATE=0.0010;THETA=0.0022;AC=1755;AN=2184 GT:DS:GL:BD 0.80357140 1 1 26116185 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26116294 . GT G 737 PASS INDEL;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0057;AVGPOST=0.9971;RSQ=0.8151;ERATE=0.0003;THETA=0.0108;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26116328 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26116425 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.7976;ERATE=0.0005;THETA=0.0034;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26116672 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0195;AVGPOST=0.9995;RSQ=0.9886;ERATE=0.0003;THETA=0.0009;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 26116762 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0030;AVGPOST=0.9992;RSQ=0.8851;ERATE=0.0004;THETA=0.0032;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26116901 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26116920 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7561;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26116939 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0072;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26116980 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.984;LDAF=0.7957;AVGPOST=0.9908;RSQ=0.9823;ERATE=0.0005;THETA=0.0051;AC=1738;AN=2184 GT:DS:GL:BD 0.79578757 1 1 26117028 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0003;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26117065 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.890;LDAF=0.0248;AVGPOST=0.9949;RSQ=0.9163;ERATE=0.0007;THETA=0.0041;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 26117080 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0062;AVGPOST=0.9995;RSQ=0.9613;ERATE=0.0004;THETA=0.0015;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26117155 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0071;AVGPOST=0.9995;RSQ=0.9714;ERATE=0.0003;THETA=0.0041;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26117156 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26117242 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0075;AVGPOST=0.9985;RSQ=0.9230;ERATE=0.0003;THETA=0.0049;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26117265 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.923;LDAF=0.0283;AVGPOST=0.9946;RSQ=0.9322;ERATE=0.0005;THETA=0.0009;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 26117288 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5326;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26117309 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6228;ERATE=0.0003;THETA=0.0068;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26117323 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.962;LDAF=0.8221;AVGPOST=0.9872;RSQ=0.9706;ERATE=0.0023;THETA=0.0040;AC=1794;AN=2184 GT:DS:GL:BD 0.82142860 1 1 26117375 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9033;ERATE=0.0003;THETA=0.0060;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26117391 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0071;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26117470 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.8292;ERATE=0.0004;THETA=0.0037;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26117727 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26117754 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7297;ERATE=0.0004;THETA=0.0035;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26117815 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0206;AVGPOST=0.9996;RSQ=0.9913;ERATE=0.0003;THETA=0.0017;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 26117829 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7753;ERATE=0.0003;THETA=0.0028;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26117855 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0081;AVGPOST=0.9986;RSQ=0.9264;ERATE=0.0003;THETA=0.0032;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26117888 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0210;AVGPOST=0.9991;RSQ=0.9798;ERATE=0.0005;THETA=0.0019;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 26117891 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.901;LDAF=0.0080;AVGPOST=0.9987;RSQ=0.9366;ERATE=0.0003;THETA=0.0020;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26117903 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.776;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7440;ERATE=0.0004;THETA=0.0021;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26117946 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9191;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26117984 . AG A 291 PASS INDEL;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0061;AVGPOST=0.9989;RSQ=0.9285;ERATE=0.0003;THETA=0.0034;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26118002 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.822;LDAF=0.0149;AVGPOST=0.9959;RSQ=0.8775;ERATE=0.0005;THETA=0.0009;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 26118003 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.648;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7502;ERATE=0.0005;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26118125 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0039;AVGPOST=0.9980;RSQ=0.7735;ERATE=0.0006;THETA=0.0042;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26118135 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0099;AVGPOST=0.9994;RSQ=0.9723;ERATE=0.0004;THETA=0.0018;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26118149 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.961;LDAF=0.0367;AVGPOST=0.9949;RSQ=0.9448;ERATE=0.0005;THETA=0.0037;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 26118209 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26118299 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.934;LDAF=0.3412;AVGPOST=0.9670;RSQ=0.9505;ERATE=0.0009;THETA=0.0011;AC=730;AN=2184 GT:DS:GL:BD 0.33424908 0 1 26118304 . TC T 46 PASS INDEL;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7061;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26118327 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0213;AVGPOST=0.9992;RSQ=0.9836;ERATE=0.0004;THETA=0.0031;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 26118389 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0035;AVGPOST=0.9988;RSQ=0.8614;ERATE=0.0005;THETA=0.0013;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26118390 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4549;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26118521 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7429;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26118633 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26118650 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.8939;AVGPOST=0.9983;RSQ=0.9934;ERATE=0.0004;THETA=0.0006;AC=1952;AN=2184 GT:DS:GL:BD 0.89377290 1 1 26118656 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0023;AVGPOST=0.9993;RSQ=0.8764;ERATE=0.0003;THETA=0.0039;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26118700 . C CA 968 PASS INDEL;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0054;AVGPOST=0.9986;RSQ=0.9022;ERATE=0.0004;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26118947 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0401;AVGPOST=0.9992;RSQ=0.9915;ERATE=0.0004;THETA=0.0009;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 26119013 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.819;LDAF=0.0079;AVGPOST=0.9946;RSQ=0.7055;ERATE=0.0011;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26119013 . A AT 14 PASS INDEL;BAVGPOST=0.994;BRSQ=0.540;LDAF=0.0075;AVGPOST=0.9953;RSQ=0.7505;ERATE=0.0008;THETA=0.0010;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26119014 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.924;LDAF=0.0114;AVGPOST=0.9979;RSQ=0.9213;ERATE=0.0006;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26119124 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5545;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26119170 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0507;AVGPOST=0.9993;RSQ=0.9939;ERATE=0.0004;THETA=0.0010;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 26119193 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5519;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26119249 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0108;AVGPOST=0.9994;RSQ=0.9754;ERATE=0.0004;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26119583 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.8951;AVGPOST=0.9980;RSQ=0.9930;ERATE=0.0006;THETA=0.0026;AC=1955;AN=2184 GT:DS:GL:BD 0.89514655 1 1 26119643 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0044;AVGPOST=0.9962;RSQ=0.6548;ERATE=0.0004;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26119654 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4350;ERATE=0.0005;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26119703 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0354;AVGPOST=0.9981;RSQ=0.9759;ERATE=0.0006;THETA=0.0006;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 26119706 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0349;AVGPOST=0.9995;RSQ=0.9930;ERATE=0.0004;THETA=0.0006;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 26119801 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.753;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6793;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26119918 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.711;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5175;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26119935 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.987;LDAF=0.2270;AVGPOST=0.9956;RSQ=0.9905;ERATE=0.0006;THETA=0.0010;AC=497;AN=2184 GT:DS:GL:BD 0.22756410 0 1 26120041 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2339;AVGPOST=0.9978;RSQ=0.9949;ERATE=0.0004;THETA=0.0005;AC=512;AN=2184 GT:DS:GL:BD 0.23443224 0 1 26120049 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0123;AVGPOST=0.9989;RSQ=0.9645;ERATE=0.0005;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26120171 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26120317 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.5720;AVGPOST=0.9956;RSQ=0.9932;ERATE=0.0008;THETA=0.0003;AC=1247;AN=2184 GT:DS:GL:BD 0.57097071 1 1 26120367 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.5643;AVGPOST=0.9918;RSQ=0.9877;ERATE=0.0006;THETA=0.0007;AC=1232;AN=2184 GT:DS:GL:BD 0.56410259 1 1 26120421 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0207;AVGPOST=0.9996;RSQ=0.9913;ERATE=0.0004;THETA=0.0007;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 26120493 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0025;AVGPOST=0.9977;RSQ=0.6383;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26120522 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0044;AVGPOST=0.9994;RSQ=0.9312;ERATE=0.0004;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26120543 . TC T 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0038;AVGPOST=0.9989;RSQ=0.8915;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26120565 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0123;AVGPOST=0.9994;RSQ=0.9806;ERATE=0.0003;THETA=0.0002;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26120633 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5650;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26120653 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0161;AVGPOST=0.9998;RSQ=0.9938;ERATE=0.0003;THETA=0.0006;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 26120668 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0103;AVGPOST=0.9993;RSQ=0.9710;ERATE=0.0004;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26120869 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2287;AVGPOST=0.9987;RSQ=0.9971;ERATE=0.0004;THETA=0.0007;AC=500;AN=2184 GT:DS:GL:BD 0.22893773 0 1 26121036 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.8190;AVGPOST=0.9981;RSQ=0.9950;ERATE=0.0005;THETA=0.0004;AC=1789;AN=2184 GT:DS:GL:BD 0.81913918 1 1 26121037 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.607;LDAF=0.0022;AVGPOST=0.9978;RSQ=0.5924;ERATE=0.0008;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26121067 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0059;AVGPOST=0.9998;RSQ=0.9856;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26121077 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5912;AVGPOST=0.9987;RSQ=0.9976;ERATE=0.0005;THETA=0.0002;AC=1290;AN=2184 GT:DS:GL:BD 0.59065932 1 1 26121170 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.764;LDAF=0.0073;AVGPOST=0.9939;RSQ=0.6940;ERATE=0.0005;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26121247 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.745;LDAF=0.0024;AVGPOST=0.9958;RSQ=0.2407;ERATE=0.0008;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26121347 . TG T 54 PASS INDEL;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0037;AVGPOST=0.9962;RSQ=0.5936;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26121498 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0160;AVGPOST=0.9996;RSQ=0.9895;ERATE=0.0003;THETA=0.0013;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 26121555 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8202;AVGPOST=0.9990;RSQ=0.9974;ERATE=0.0004;THETA=0.0004;AC=1791;AN=2184 GT:DS:GL:BD 0.82005495 1 1 26121938 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0006;AVGPOST=0.9991;RSQ=0.3993;ERATE=0.0004;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26121973 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26122002 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0056;AVGPOST=0.9988;RSQ=0.9301;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26122057 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.659;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.6003;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26122097 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5933;AVGPOST=0.9976;RSQ=0.9960;ERATE=0.0005;THETA=0.0030;AC=1294;AN=2184 GT:DS:GL:BD 0.59249085 1 1 26122198 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.5880;AVGPOST=0.9967;RSQ=0.9945;ERATE=0.0007;THETA=0.0006;AC=1283;AN=2184 GT:DS:GL:BD 0.58745420 1 1 26122230 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6756;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26122398 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0142;AVGPOST=0.9997;RSQ=0.9892;ERATE=0.0004;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 26122455 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6008;ERATE=0.0004;THETA=0.0042;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26122458 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0059;AVGPOST=0.9990;RSQ=0.9272;ERATE=0.0005;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26122464 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9804;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26122466 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.735;LDAF=0.0033;AVGPOST=0.9978;RSQ=0.7155;ERATE=0.0008;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26122487 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9927;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26122488 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7230;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26122583 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0106;AVGPOST=0.9999;RSQ=0.9961;ERATE=0.0003;THETA=0.0008;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26122648 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26122707 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0067;AVGPOST=0.9993;RSQ=0.9642;ERATE=0.0004;THETA=0.0019;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26122908 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0106;AVGPOST=0.9989;RSQ=0.9549;ERATE=0.0004;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26122925 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8950;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26122979 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8371;AVGPOST=0.9989;RSQ=0.9968;ERATE=0.0004;THETA=0.0011;AC=1828;AN=2184 GT:DS:GL:BD 0.83699632 1 1 26123093 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7819;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26123159 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.736;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5943;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26123213 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.825;LDAF=0.0097;AVGPOST=0.9942;RSQ=0.7402;ERATE=0.0019;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26123216 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8977;AVGPOST=0.9989;RSQ=0.9953;ERATE=0.0004;THETA=0.0004;AC=1961;AN=2184 GT:DS:GL:BD 0.89789379 1 1 26123318 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.744;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5542;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26123405 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.890;LDAF=0.0248;AVGPOST=0.9931;RSQ=0.8821;ERATE=0.0007;THETA=0.0005;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 26123612 . C CGT 1126 PASS INDEL;BAVGPOST=0.962;BRSQ=0.555;LDAF=0.0638;AVGPOST=0.9362;RSQ=0.5582;ERATE=0.0069;THETA=0.0011;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 26123681 rs72441368 AAGAG A 35713 PASS INDEL;BAVGPOST=0.915;BRSQ=0.840;LDAF=0.5126;AVGPOST=0.8642;RSQ=0.7843;ERATE=0.0360;THETA=0.0004;AC=1161;AN=2184 GT:DS:GL:BD 0.53159338 1 1 26123750 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5917;AVGPOST=0.9983;RSQ=0.9968;ERATE=0.0005;THETA=0.0010;AC=1291;AN=2184 GT:DS:GL:BD 0.59111720 1 1 26123876 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0056;AVGPOST=0.9985;RSQ=0.9028;ERATE=0.0003;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26123901 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.6490;ERATE=0.0004;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26123939 . TC T 1722 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0101;AVGPOST=0.9989;RSQ=0.9497;ERATE=0.0004;THETA=0.0008;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26123971 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.5935;AVGPOST=0.9972;RSQ=0.9954;ERATE=0.0012;THETA=0.0005;AC=1294;AN=2184 GT:DS:GL:BD 0.59249085 1 1 26124007 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8376;AVGPOST=0.9992;RSQ=0.9973;ERATE=0.0004;THETA=0.0005;AC=1829;AN=2184 GT:DS:GL:BD 0.83745420 1 1 26124020 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.713;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26124126 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=0.9998;RSQ=0.9908;ERATE=0.0003;THETA=0.0024;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26124313 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6160;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26124570 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0109;AVGPOST=0.9997;RSQ=0.9864;ERATE=0.0003;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26124611 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5817;AVGPOST=0.9970;RSQ=0.9950;ERATE=0.0005;THETA=0.0014;AC=1270;AN=2184 GT:DS:GL:BD 0.58150184 1 1 26124633 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0060;AVGPOST=0.9989;RSQ=0.9153;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26124680 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.728;LDAF=0.0080;AVGPOST=0.9955;RSQ=0.7892;ERATE=0.0004;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26124682 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0216;AVGPOST=0.9989;RSQ=0.9757;ERATE=0.0004;THETA=0.0004;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 26124758 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.760;LDAF=0.0033;AVGPOST=0.9993;RSQ=0.8972;ERATE=0.0003;THETA=0.0019;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26125038 . C CTAG 91 PASS INDEL;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26125060 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8984;AVGPOST=0.9995;RSQ=0.9978;ERATE=0.0004;THETA=0.0005;AC=1962;AN=2184 GT:DS:GL:BD 0.89835167 1 1 26125081 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5938;AVGPOST=0.9987;RSQ=0.9976;ERATE=0.0004;THETA=0.0005;AC=1296;AN=2184 GT:DS:GL:BD 0.59340662 1 1 26125102 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7590;ERATE=0.0008;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26125160 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.721;LDAF=0.0037;AVGPOST=0.9972;RSQ=0.6651;ERATE=0.0006;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26125161 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0022;AVGPOST=0.9988;RSQ=0.7981;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26125175 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5935;AVGPOST=0.9978;RSQ=0.9961;ERATE=0.0005;THETA=0.0007;AC=1295;AN=2184 GT:DS:GL:BD 0.59294873 1 1 26125341 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8060;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26125597 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6414;ERATE=0.0004;THETA=0.0029;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26125640 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.2233;AVGPOST=0.9976;RSQ=0.9944;ERATE=0.0005;THETA=0.0005;AC=489;AN=2184 GT:DS:GL:BD 0.22390109 0 1 26125663 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0078;AVGPOST=0.9990;RSQ=0.9540;ERATE=0.0004;THETA=0.0010;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26125749 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0033;AVGPOST=0.9968;RSQ=0.6625;ERATE=0.0005;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26125782 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5316;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26125784 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.693;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4501;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26125810 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.753;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7599;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26125834 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.990;LDAF=0.5633;AVGPOST=0.9904;RSQ=0.9842;ERATE=0.0032;THETA=0.0004;AC=1229;AN=2184 GT:DS:GL:BD 0.56272894 1 1 26125942 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0035;AVGPOST=0.9969;RSQ=0.6536;ERATE=0.0005;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26126130 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.780;LDAF=0.0024;AVGPOST=0.9972;RSQ=0.5355;ERATE=0.0006;THETA=0.0039;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26126156 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.658;LDAF=0.0019;AVGPOST=0.9978;RSQ=0.5050;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26126274 rs10719116 AG A 24036 PASS INDEL;BAVGPOST=0.993;BRSQ=0.986;LDAF=0.5887;AVGPOST=0.9733;RSQ=0.9536;ERATE=0.0033;THETA=0.0005;AC=1290;AN=2184 GT:DS:GL:BD 0.59065932 1 1 26126375 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.5884;AVGPOST=0.9924;RSQ=0.9873;ERATE=0.0009;THETA=0.0006;AC=1285;AN=2184 GT:DS:GL:BD 0.58836997 1 1 26126404 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.503;LDAF=0.0030;AVGPOST=0.9957;RSQ=0.3887;ERATE=0.0006;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26126412 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.709;LDAF=0.0063;AVGPOST=0.9971;RSQ=0.8441;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26126492 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.887;LDAF=0.0079;AVGPOST=0.9976;RSQ=0.8858;ERATE=0.0004;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26126598 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.729;LDAF=0.0239;AVGPOST=0.9733;RSQ=0.5395;ERATE=0.0019;THETA=0.0010;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 26126763 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.845;BRSQ=0.026;LDAF=0.1182;AVGPOST=0.8186;RSQ=0.2751;ERATE=0.0106;THETA=0.0006;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 26127020 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.945;BRSQ=0.815;LDAF=0.8393;AVGPOST=0.9653;RSQ=0.8962;ERATE=0.0026;THETA=0.0003;AC=1855;AN=2184 GT:DS:GL:BD 0.84935898 1 1 26127045 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.756;LDAF=0.0123;AVGPOST=0.9901;RSQ=0.6559;ERATE=0.0013;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26127080 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0081;AVGPOST=0.9957;RSQ=0.7811;ERATE=0.0007;THETA=0.0013;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26127115 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5097;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26127202 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.896;LDAF=0.8404;AVGPOST=0.9745;RSQ=0.9354;ERATE=0.0008;THETA=0.0006;AC=1847;AN=2184 GT:DS:GL:BD 0.84569597 1 1 26127203 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.893;LDAF=0.8359;AVGPOST=0.9687;RSQ=0.9184;ERATE=0.0043;THETA=0.0005;AC=1842;AN=2184 GT:DS:GL:BD 0.84340662 1 1 26127349 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8470;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26127425 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6367;AVGPOST=0.9991;RSQ=0.9985;ERATE=0.0004;THETA=0.0004;AC=1389;AN=2184 GT:DS:GL:BD 0.63598901 1 1 26127513 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26127677 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26127765 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0101;AVGPOST=0.9998;RSQ=0.9900;ERATE=0.0004;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26128008 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.981;LDAF=0.2215;AVGPOST=0.9947;RSQ=0.9885;ERATE=0.0006;THETA=0.0009;AC=485;AN=2184 GT:DS:GL:BD 0.22206959 0 1 26128112 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0327;AVGPOST=0.9982;RSQ=0.9754;ERATE=0.0004;THETA=0.0004;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 26128174 . C CA 845 PASS INDEL;BAVGPOST=0.986;BRSQ=0.691;LDAF=0.0254;AVGPOST=0.9833;RSQ=0.7295;ERATE=0.0046;THETA=0.0007;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 26128182 rs112384152 C CA 48313 PASS INDEL;BAVGPOST=0.980;BRSQ=0.963;LDAF=0.5554;AVGPOST=0.9797;RSQ=0.9681;ERATE=0.0054;THETA=0.0006;AC=1214;AN=2184 GT:DS:GL:BD 0.55586082 1 1 26128212 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6579;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26128261 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6295;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26128307 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.983;LDAF=0.9059;AVGPOST=0.9978;RSQ=0.9897;ERATE=0.0005;THETA=0.0008;AC=1978;AN=2184 GT:DS:GL:BD 0.90567768 1 1 26128313 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5514;ERATE=0.0003;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26128350 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7172;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26128404 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5595;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26128622 . C CA 266 PASS INDEL;BAVGPOST=0.999;BRSQ=0.662;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6555;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26128663 . TAG T 84 PASS INDEL;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8514;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26129317 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9596;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26129391 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0040;AVGPOST=0.9989;RSQ=0.8898;ERATE=0.0005;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26129438 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5879;AVGPOST=0.9979;RSQ=0.9962;ERATE=0.0006;THETA=0.0005;AC=1283;AN=2184 GT:DS:GL:BD 0.58745420 1 1 26129450 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7715;ERATE=0.0006;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26129487 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.886;LDAF=0.0139;AVGPOST=0.9986;RSQ=0.9682;ERATE=0.0004;THETA=0.0007;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26129497 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26129631 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.5827;AVGPOST=0.9976;RSQ=0.9962;ERATE=0.0005;THETA=0.0005;AC=1271;AN=2184 GT:DS:GL:BD 0.58195972 1 1 26129668 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.723;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26129701 . C CT 1858 PASS INDEL;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0126;AVGPOST=0.9984;RSQ=0.9463;ERATE=0.0004;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26129730 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26130014 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5858;ERATE=0.0004;THETA=0.0043;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26130110 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0051;AVGPOST=0.9994;RSQ=0.9422;ERATE=0.0004;THETA=0.0011;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26130258 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.797;LDAF=0.0023;AVGPOST=0.9992;RSQ=0.8503;ERATE=0.0003;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26130334 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.511;LDAF=0.0028;AVGPOST=0.9960;RSQ=0.4112;ERATE=0.0009;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26130350 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0061;AVGPOST=0.9984;RSQ=0.8919;ERATE=0.0005;THETA=0.0021;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26130492 . CATT C 175 PASS INDEL;BAVGPOST=0.999;BRSQ=0.787;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.4158;ERATE=0.0008;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26130510 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0076;AVGPOST=0.9993;RSQ=0.9571;ERATE=0.0003;THETA=0.0036;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26130568 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26130598 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0052;AVGPOST=0.9996;RSQ=0.9666;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26130601 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4905;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26130744 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.709;LDAF=0.0032;AVGPOST=0.9985;RSQ=0.7965;ERATE=0.0004;THETA=0.0016;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26130871 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0319;AVGPOST=0.9976;RSQ=0.9689;ERATE=0.0004;THETA=0.0005;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 26130925 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.730;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4369;ERATE=0.0006;THETA=0.0062;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26130975 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.645;LDAF=0.0043;AVGPOST=0.9981;RSQ=0.8384;ERATE=0.0005;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26130992 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.8690;AVGPOST=0.9962;RSQ=0.9868;ERATE=0.0004;THETA=0.0021;AC=1899;AN=2184 GT:DS:GL:BD 0.86950547 1 1 26131021 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.967;LDAF=0.2622;AVGPOST=0.9861;RSQ=0.9726;ERATE=0.0007;THETA=0.0014;AC=569;AN=2184 GT:DS:GL:BD 0.26053113 0 1 26131126 . GC G 13 PASS INDEL;BAVGPOST=0.969;BRSQ=0.132;LDAF=0.0404;AVGPOST=0.9399;RSQ=0.3611;ERATE=0.0036;THETA=0.0013;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 26131131 . CCCCG C 520 PASS INDEL;BAVGPOST=0.742;BRSQ=0.199;LDAF=0.1770;AVGPOST=0.7879;RSQ=0.4278;ERATE=0.0051;THETA=0.0031;AC=234;AN=2184 GT:DS:GL:BD 0.10714286 0 1 26131133 . CCG C 638 PASS INDEL;BAVGPOST=0.672;BRSQ=0.219;LDAF=0.2453;AVGPOST=0.7242;RSQ=0.3891;ERATE=0.0101;THETA=0.0083;AC=339;AN=2184 GT:DS:GL:BD 0.15521978 0 1 26131134 . CG C 996 PASS INDEL;BAVGPOST=0.630;BRSQ=0.197;LDAF=0.3367;AVGPOST=0.6338;RSQ=0.3001;ERATE=0.0330;THETA=0.0018;AC=497;AN=2184 GT:DS:GL:BD 0.22756410 0 1 26131135 rs11306766 GC G 1005 PASS INDEL;BAVGPOST=0.378;BRSQ=0.052;LDAF=0.5866;AVGPOST=0.5892;RSQ=0.2429;ERATE=0.0251;THETA=0.0009;AC=1391;AN=2184 GT:DS:GL:BD 0.63690478 1 1 26131148 . CG C 402 PASS INDEL;BAVGPOST=0.759;BRSQ=0.127;LDAF=0.2187;AVGPOST=0.6998;RSQ=0.2596;ERATE=0.0260;THETA=0.0060;AC=204;AN=2184 GT:DS:GL:BD 0.09340660 0 1 26131153 . C CA 343 PASS INDEL;BAVGPOST=0.832;BRSQ=0.205;LDAF=0.2070;AVGPOST=0.7284;RSQ=0.3206;ERATE=0.0251;THETA=0.0005;AC=233;AN=2184 GT:DS:GL:BD 0.10668498 0 1 26131188 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.906;LDAF=0.8231;AVGPOST=0.9747;RSQ=0.9391;ERATE=0.0040;THETA=0.0061;AC=1803;AN=2184 GT:DS:GL:BD 0.82554942 1 1 26131202 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6863;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26131251 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5692;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26131304 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.871;LDAF=0.0041;AVGPOST=0.9992;RSQ=0.9306;ERATE=0.0003;THETA=0.0074;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26131459 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.942;LDAF=0.5450;AVGPOST=0.9709;RSQ=0.9546;ERATE=0.0324;THETA=0.0053;AC=1189;AN=2184 GT:DS:GL:BD 0.54441392 1 1 26131488 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.6973;ERATE=0.0003;THETA=0.0049;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26131518 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0135;AVGPOST=0.9995;RSQ=0.9850;ERATE=0.0005;THETA=0.0019;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26131638 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.885;LDAF=0.0089;AVGPOST=0.9985;RSQ=0.9365;ERATE=0.0005;THETA=0.0099;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26131654 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.963;LDAF=0.8311;AVGPOST=0.9871;RSQ=0.9665;ERATE=0.0040;THETA=0.0017;AC=1821;AN=2184 GT:DS:GL:BD 0.83379120 1 1 26131656 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7706;ERATE=0.0003;THETA=0.0170;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26131685 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26131810 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0100;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26131918 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6359;ERATE=0.0004;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26131941 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8059;ERATE=0.0004;THETA=0.0092;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26131971 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.915;LDAF=0.0103;AVGPOST=0.9995;RSQ=0.9796;ERATE=0.0004;THETA=0.0009;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26132059 . T TG 5 PASS INDEL;BAVGPOST=0.999;BRSQ=0.484;LDAF=0.0024;AVGPOST=0.9971;RSQ=0.5643;ERATE=0.0004;THETA=0.0036;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26132065 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.416;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7365;ERATE=0.0004;THETA=0.0019;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26132120 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.922;LDAF=0.0066;AVGPOST=0.9983;RSQ=0.9002;ERATE=0.0003;THETA=0.0018;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26132134 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.885;LDAF=0.0216;AVGPOST=0.9952;RSQ=0.9170;ERATE=0.0004;THETA=0.0054;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 26132137 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7632;ERATE=0.0005;THETA=0.0148;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26132266 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.951;LDAF=0.0236;AVGPOST=0.9983;RSQ=0.9730;ERATE=0.0003;THETA=0.0036;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 26132323 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.990;LDAF=0.7524;AVGPOST=0.9918;RSQ=0.9866;ERATE=0.0004;THETA=0.0035;AC=1640;AN=2184 GT:DS:GL:BD 0.75091577 1 1 26132341 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8894;ERATE=0.0004;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26132509 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0032;AVGPOST=0.9991;RSQ=0.8684;ERATE=0.0011;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26132541 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.939;LDAF=0.0211;AVGPOST=0.9968;RSQ=0.9415;ERATE=0.0003;THETA=0.0047;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 26132561 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6106;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26132566 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7113;ERATE=0.0006;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26132571 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0003;THETA=0.0027;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26132691 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.4401;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26132762 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0138;AVGPOST=0.9996;RSQ=0.9863;ERATE=0.0003;THETA=0.0011;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 26132792 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.8739;AVGPOST=0.9985;RSQ=0.9955;ERATE=0.0004;THETA=0.0020;AC=1907;AN=2184 GT:DS:GL:BD 0.87316847 1 1 26132898 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6021;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26132999 . T TG 59 PASS INDEL;BAVGPOST=0.999;BRSQ=0.701;LDAF=0.0018;AVGPOST=0.9975;RSQ=0.4518;ERATE=0.0006;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26133099 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8837;AVGPOST=0.9984;RSQ=0.9941;ERATE=0.0004;THETA=0.0007;AC=1930;AN=2184 GT:DS:GL:BD 0.88369966 1 1 26133133 . TGAG T 33 PASS INDEL;BAVGPOST=1.000;BRSQ=0.665;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.3789;ERATE=0.0006;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26133260 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.689;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6885;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26133310 rs72099051 C CT 647 PASS INDEL;BAVGPOST=0.659;BRSQ=0.161;LDAF=0.3019;AVGPOST=0.6546;RSQ=0.2828;ERATE=0.0275;THETA=0.0013;AC=404;AN=2184 GT:DS:GL:BD 0.18498169 0 1 26133317 . T TC 392 PASS INDEL;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0128;AVGPOST=0.9962;RSQ=0.8858;ERATE=0.0007;THETA=0.0040;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26133351 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0053;AVGPOST=0.9976;RSQ=0.7959;ERATE=0.0007;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26133352 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.312;LDAF=0.0031;AVGPOST=0.9947;RSQ=0.2245;ERATE=0.0010;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26133467 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.654;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4603;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26133503 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0039;AVGPOST=0.9989;RSQ=0.8793;ERATE=0.0005;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26133572 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0022;AVGPOST=0.9974;RSQ=0.5242;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26133629 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.613;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5262;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26133709 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0095;AVGPOST=0.9992;RSQ=0.9662;ERATE=0.0004;THETA=0.0019;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26133746 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7918;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26133764 rs113030373 CAG C 2387 PASS INDEL;BAVGPOST=0.996;BRSQ=0.918;LDAF=0.0160;AVGPOST=0.9977;RSQ=0.9475;ERATE=0.0003;THETA=0.0015;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 26133768 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26133880 . TAGGC T 196 PASS INDEL;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0019;AVGPOST=0.9982;RSQ=0.6242;ERATE=0.0004;THETA=0.0029;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26133910 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0206;AVGPOST=0.9983;RSQ=0.9639;ERATE=0.0005;THETA=0.0004;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 26133971 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0045;AVGPOST=0.9993;RSQ=0.9295;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26134094 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0084;AVGPOST=0.9979;RSQ=0.9004;ERATE=0.0005;THETA=0.0011;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26134209 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9426;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26134303 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.952;LDAF=0.0251;AVGPOST=0.9984;RSQ=0.9734;ERATE=0.0004;THETA=0.0007;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 26134331 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5929;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26134379 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0065;AVGPOST=0.9993;RSQ=0.9569;ERATE=0.0003;THETA=0.0074;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26134390 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4373;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26134408 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8303;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26134411 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26134506 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0278;AVGPOST=0.9984;RSQ=0.9785;ERATE=0.0003;THETA=0.0019;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 26134571 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.937;LDAF=0.0132;AVGPOST=0.9976;RSQ=0.9324;ERATE=0.0004;THETA=0.0007;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26134579 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0111;AVGPOST=0.9998;RSQ=0.9900;ERATE=0.0003;THETA=0.0035;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26134590 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7809;ERATE=0.0011;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26134772 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.629;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.5800;ERATE=0.0006;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26134896 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7654;ERATE=0.0003;THETA=0.0023;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26134901 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0324;AVGPOST=0.9991;RSQ=0.9895;ERATE=0.0003;THETA=0.0012;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 26134915 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0132;AVGPOST=0.9992;RSQ=0.9738;ERATE=0.0004;THETA=0.0027;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26134926 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.986;LDAF=0.2376;AVGPOST=0.9910;RSQ=0.9814;ERATE=0.0005;THETA=0.0010;AC=514;AN=2184 GT:DS:GL:BD 0.23534799 0 1 26134929 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5409;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26135067 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0017;AVGPOST=0.9996;RSQ=0.9254;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26135078 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26135083 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26135116 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.867;LDAF=0.0078;AVGPOST=0.9981;RSQ=0.8901;ERATE=0.0004;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26135262 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9403;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26135319 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0109;AVGPOST=0.9983;RSQ=0.9392;ERATE=0.0004;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26135339 . CCT C 10 PASS INDEL;BAVGPOST=0.999;BRSQ=0.537;LDAF=0.0034;AVGPOST=0.9957;RSQ=0.5016;ERATE=0.0006;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26135477 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0141;AVGPOST=0.9993;RSQ=0.9768;ERATE=0.0004;THETA=0.0008;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 26135505 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.754;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8381;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26135615 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8782;ERATE=0.0004;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26135621 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8879;ERATE=0.0007;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26135688 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6791;ERATE=0.0006;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26135696 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.829;LDAF=0.0030;AVGPOST=0.9977;RSQ=0.7513;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26135741 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2286;AVGPOST=0.9913;RSQ=0.9809;ERATE=0.0006;THETA=0.0029;AC=497;AN=2184 GT:DS:GL:BD 0.22756410 0 1 26135856 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0254;AVGPOST=0.9965;RSQ=0.9523;ERATE=0.0006;THETA=0.0016;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 26135876 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.780;LDAF=0.0023;AVGPOST=0.9980;RSQ=0.6543;ERATE=0.0011;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26135913 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.8803;AVGPOST=0.9939;RSQ=0.9803;ERATE=0.0005;THETA=0.0005;AC=1924;AN=2184 GT:DS:GL:BD 0.88095236 1 1 26135970 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6143;ERATE=0.0004;THETA=0.0041;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26136006 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.829;LDAF=0.0025;AVGPOST=0.9990;RSQ=0.8474;ERATE=0.0003;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26136183 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26136208 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26136282 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.925;LDAF=0.0149;AVGPOST=0.9976;RSQ=0.9391;ERATE=0.0005;THETA=0.0007;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 26136298 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26136319 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7530;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26136383 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0155;AVGPOST=0.9997;RSQ=0.9915;ERATE=0.0003;THETA=0.0007;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 26136387 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0155;AVGPOST=0.9997;RSQ=0.9902;ERATE=0.0003;THETA=0.0006;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 26136443 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.753;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5134;ERATE=0.0006;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26136451 . GA G 76 PASS INDEL;BAVGPOST=0.996;BRSQ=0.347;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4487;ERATE=0.0006;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26136452 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.8250;AVGPOST=0.9966;RSQ=0.9915;ERATE=0.0005;THETA=0.0007;AC=1803;AN=2184 GT:DS:GL:BD 0.82554942 1 1 26136650 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0234;AVGPOST=0.9997;RSQ=0.9939;ERATE=0.0003;THETA=0.0006;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 26136700 . TC T 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4320;ERATE=0.0004;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26136924 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0101;AVGPOST=0.9986;RSQ=0.9347;ERATE=0.0005;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26136939 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.691;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5802;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26136971 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.3844;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26137025 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0230;AVGPOST=0.9998;RSQ=0.9954;ERATE=0.0003;THETA=0.0006;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 26137142 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26137247 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0231;AVGPOST=0.9995;RSQ=0.9892;ERATE=0.0004;THETA=0.0005;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 26137369 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0154;AVGPOST=0.9992;RSQ=0.9761;ERATE=0.0004;THETA=0.0008;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26137458 . CCT C 57 PASS INDEL;BAVGPOST=1.000;BRSQ=0.692;LDAF=0.0026;AVGPOST=0.9974;RSQ=0.5503;ERATE=0.0005;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26137479 . A AG 13 PASS INDEL;BAVGPOST=0.999;BRSQ=0.619;LDAF=0.0031;AVGPOST=0.9969;RSQ=0.5583;ERATE=0.0008;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26137480 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8114;ERATE=0.0005;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26137518 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0259;AVGPOST=0.9984;RSQ=0.9748;ERATE=0.0005;THETA=0.0008;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 26137571 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0262;AVGPOST=0.9997;RSQ=0.9944;ERATE=0.0003;THETA=0.0006;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 26137602 rs61054877 C CTG 5310 PASS INDEL;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0256;AVGPOST=0.9989;RSQ=0.9811;ERATE=0.0006;THETA=0.0007;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 26137764 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0097;AVGPOST=0.9998;RSQ=0.9886;ERATE=0.0003;THETA=0.0010;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26137817 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.945;LDAF=0.0175;AVGPOST=0.9978;RSQ=0.9521;ERATE=0.0003;THETA=0.0008;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 26137842 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0229;AVGPOST=0.9999;RSQ=0.9982;ERATE=0.0003;THETA=0.0009;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 26137921 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26138009 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7425;ERATE=0.0003;THETA=0.0041;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26138032 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9265;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26138042 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7177;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26138076 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7533;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26138104 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26138132 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26138136 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7512;AVGPOST=0.9986;RSQ=0.9974;ERATE=0.0005;THETA=0.0013;AC=1640;AN=2184 GT:DS:GL:BD 0.75091577 1 1 26138262 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7926;AVGPOST=0.9993;RSQ=0.9984;ERATE=0.0004;THETA=0.0002;AC=1730;AN=2184 GT:DS:GL:BD 0.79212457 1 1 26138412 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.736;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5899;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26138451 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7929;AVGPOST=0.9966;RSQ=0.9922;ERATE=0.0011;THETA=0.0005;AC=1732;AN=2184 GT:DS:GL:BD 0.79304028 1 1 26138525 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.608;LDAF=0.0023;AVGPOST=0.9974;RSQ=0.5811;ERATE=0.0007;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26138661 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0268;AVGPOST=0.9989;RSQ=0.9831;ERATE=0.0004;THETA=0.0004;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 26138748 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4569;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26138767 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0398;AVGPOST=0.9990;RSQ=0.9900;ERATE=0.0004;THETA=0.0003;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 26138791 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.785;LDAF=0.0025;AVGPOST=0.9966;RSQ=0.4628;ERATE=0.0006;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26138931 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0223;AVGPOST=0.9975;RSQ=0.9573;ERATE=0.0005;THETA=0.0005;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 26138953 . TAC T 44259 PASS INDEL;BAVGPOST=0.989;BRSQ=0.980;LDAF=0.7435;AVGPOST=0.9855;RSQ=0.9761;ERATE=0.0035;THETA=0.0005;AC=1629;AN=2184 GT:DS:GL:BD 0.74587911 1 1 26139019 rs67185218 CACAG C 4751 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0197;AVGPOST=0.9998;RSQ=0.9948;ERATE=0.0004;THETA=0.0005;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 26139033 . CAAAT C 351 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9322;ERATE=0.0004;THETA=0.0012;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26139051 . CACAA C 4495 PASS INDEL;BAVGPOST=0.964;BRSQ=0.795;LDAF=0.1048;AVGPOST=0.9303;RSQ=0.7170;ERATE=0.0175;THETA=0.0005;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 26139137 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7147;AVGPOST=0.9998;RSQ=0.9996;ERATE=0.0003;THETA=0.0008;AC=1560;AN=2184 GT:DS:GL:BD 0.71428573 1 1 26139247 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26139294 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0198;AVGPOST=0.9997;RSQ=0.9927;ERATE=0.0004;THETA=0.0003;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 26139392 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7947;AVGPOST=0.9982;RSQ=0.9965;ERATE=0.0004;THETA=0.0005;AC=1734;AN=2184 GT:DS:GL:BD 0.79395604 1 1 26139444 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7116;AVGPOST=0.9987;RSQ=0.9979;ERATE=0.0006;THETA=0.0011;AC=1553;AN=2184 GT:DS:GL:BD 0.71108061 1 1 26139572 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0052;AVGPOST=0.9972;RSQ=0.7713;ERATE=0.0008;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26139626 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0042;AVGPOST=0.9987;RSQ=0.8618;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26139649 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0165;AVGPOST=0.9999;RSQ=0.9973;ERATE=0.0003;THETA=0.0009;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 26139668 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0197;AVGPOST=0.9993;RSQ=0.9850;ERATE=0.0005;THETA=0.0008;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 26139853 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0169;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 26139879 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.7567;AVGPOST=0.9990;RSQ=0.9982;ERATE=0.0004;THETA=0.0004;AC=1652;AN=2184 GT:DS:GL:BD 0.75641024 1 1 26139919 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7584;AVGPOST=0.9995;RSQ=0.9991;ERATE=0.0003;THETA=0.0004;AC=1655;AN=2184 GT:DS:GL:BD 0.75778389 1 1 26139987 . TTG T 372 PASS INDEL;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26140009 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0073;AVGPOST=0.9991;RSQ=0.9471;ERATE=0.0004;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26140412 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26140491 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26140537 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0393;AVGPOST=0.9997;RSQ=0.9964;ERATE=0.0009;THETA=0.0009;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 26140538 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.7534;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26140573 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7148;AVGPOST=0.9997;RSQ=0.9995;ERATE=0.0003;THETA=0.0005;AC=1560;AN=2184 GT:DS:GL:BD 0.71428573 1 1 26140634 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26140663 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9618;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26140683 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26140710 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7080;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26140772 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26140780 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0058;AVGPOST=0.9995;RSQ=0.9591;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26140794 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0160;AVGPOST=0.9996;RSQ=0.9897;ERATE=0.0003;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 26140841 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.7537;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26141179 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7954;AVGPOST=0.9981;RSQ=0.9956;ERATE=0.0005;THETA=0.0006;AC=1737;AN=2184 GT:DS:GL:BD 0.79532969 1 1 26141219 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0041;AVGPOST=0.9990;RSQ=0.8994;ERATE=0.0003;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26141228 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9936;ERATE=0.0003;THETA=0.0013;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26141261 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.2241;AVGPOST=0.9942;RSQ=0.9871;ERATE=0.0003;THETA=0.0007;AC=489;AN=2184 GT:DS:GL:BD 0.22390109 0 1 26141483 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7350;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26141617 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.781;LDAF=0.9841;AVGPOST=0.9951;RSQ=0.8813;ERATE=0.0005;THETA=0.0005;AC=2150;AN=2184 GT:DS:GL:BD 0.98443222 1 1 26141620 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0205;AVGPOST=0.9993;RSQ=0.9848;ERATE=0.0004;THETA=0.0004;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 26141623 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0038;AVGPOST=0.9992;RSQ=0.9081;ERATE=0.0005;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26141725 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7406;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26141803 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.7199;AVGPOST=0.9969;RSQ=0.9950;ERATE=0.0011;THETA=0.0006;AC=1572;AN=2184 GT:DS:GL:BD 0.71978021 1 1 26141945 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5761;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26141974 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0308;AVGPOST=0.9988;RSQ=0.9849;ERATE=0.0003;THETA=0.0008;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 26142081 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0068;AVGPOST=0.9997;RSQ=0.9826;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26142151 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26142173 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7330;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26142175 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0001;AVGPOST=0.9998;RSQ=0.0498;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26142181 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0235;AVGPOST=0.9995;RSQ=0.9917;ERATE=0.0003;THETA=0.0005;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 26142230 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26142253 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9997;RSQ=0.9789;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26142272 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8579;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26142353 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0235;AVGPOST=0.9996;RSQ=0.9928;ERATE=0.0004;THETA=0.0003;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 26142424 . TCTGA T 288 PASS INDEL;BAVGPOST=0.997;BRSQ=0.569;LDAF=0.0030;AVGPOST=0.9976;RSQ=0.6380;ERATE=0.0007;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26142437 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0064;AVGPOST=0.9996;RSQ=0.9729;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26142476 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8152;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26142705 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0037;AVGPOST=0.9947;RSQ=0.4349;ERATE=0.0012;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26142710 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.735;LDAF=0.0106;AVGPOST=0.9933;RSQ=0.7609;ERATE=0.0007;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26142855 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0303;AVGPOST=0.9990;RSQ=0.9849;ERATE=0.0005;THETA=0.0006;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 26142888 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.731;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4721;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26142907 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.901;LDAF=0.0055;AVGPOST=0.9968;RSQ=0.7805;ERATE=0.0005;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26142946 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0039;AVGPOST=0.9992;RSQ=0.9033;ERATE=0.0005;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26142980 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.974;LDAF=0.0170;AVGPOST=0.9995;RSQ=0.9853;ERATE=0.0003;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 26142989 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0154;AVGPOST=0.9994;RSQ=0.9845;ERATE=0.0003;THETA=0.0007;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 26143147 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0055;AVGPOST=0.9982;RSQ=0.8787;ERATE=0.0003;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26143338 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.754;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5926;ERATE=0.0004;THETA=0.0046;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26143515 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.569;LDAF=0.0144;AVGPOST=0.9872;RSQ=0.6433;ERATE=0.0012;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26143615 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.933;LDAF=0.0031;AVGPOST=0.9991;RSQ=0.8631;ERATE=0.0005;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26143704 rs3033477 A ATTTTG 53750 PASS INDEL;BAVGPOST=0.974;BRSQ=0.944;LDAF=0.7365;AVGPOST=0.9310;RSQ=0.8797;ERATE=0.0099;THETA=0.0006;AC=1656;AN=2184 GT:DS:GL:BD 0.75824177 1 1 26143709 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0098;AVGPOST=0.9995;RSQ=0.9777;ERATE=0.0004;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26143821 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.7634;AVGPOST=0.9934;RSQ=0.9870;ERATE=0.0011;THETA=0.0004;AC=1670;AN=2184 GT:DS:GL:BD 0.76465201 1 1 26143931 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.8549;AVGPOST=0.9951;RSQ=0.9837;ERATE=0.0010;THETA=0.0013;AC=1870;AN=2184 GT:DS:GL:BD 0.85622710 1 1 26144040 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26144049 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26144153 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.785;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8346;ERATE=0.0005;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26144252 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0231;AVGPOST=0.9992;RSQ=0.9856;ERATE=0.0004;THETA=0.0009;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 26144339 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0059;AVGPOST=0.9994;RSQ=0.9596;ERATE=0.0004;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26144488 . TTC T 31 PASS INDEL;BAVGPOST=0.996;BRSQ=0.879;LDAF=0.0162;AVGPOST=0.9984;RSQ=0.9552;ERATE=0.0005;THETA=0.0009;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 26144489 . TCTC T 2163 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0173;AVGPOST=0.9988;RSQ=0.9680;ERATE=0.0004;THETA=0.0010;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 26144521 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0102;AVGPOST=0.9995;RSQ=0.9769;ERATE=0.0004;THETA=0.0009;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26144545 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.865;LDAF=0.0250;AVGPOST=0.9932;RSQ=0.8941;ERATE=0.0004;THETA=0.0005;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 26144674 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.987;LDAF=0.2022;AVGPOST=0.9931;RSQ=0.9828;ERATE=0.0005;THETA=0.0004;AC=443;AN=2184 GT:DS:GL:BD 0.20283882 0 1 26144763 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7368;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26144773 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6942;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26144795 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0054;AVGPOST=0.9997;RSQ=0.9778;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26144822 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8148;ERATE=0.0003;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26144829 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0205;AVGPOST=0.9990;RSQ=0.9801;ERATE=0.0003;THETA=0.0045;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 26144986 . TTTTG T 761 PASS INDEL;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0093;AVGPOST=0.9984;RSQ=0.9277;ERATE=0.0005;THETA=0.0010;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26145019 . TG T 250 PASS INDEL;BAVGPOST=0.997;BRSQ=0.596;LDAF=0.0061;AVGPOST=0.9935;RSQ=0.5731;ERATE=0.0025;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26145022 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=0.9998;RSQ=0.9913;ERATE=0.0003;THETA=0.0009;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26145093 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26145239 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0306;AVGPOST=0.9998;RSQ=0.9966;ERATE=0.0003;THETA=0.0004;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 26145328 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.969;LDAF=0.0230;AVGPOST=0.9965;RSQ=0.9483;ERATE=0.0004;THETA=0.0005;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 26145362 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5839;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26145467 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0309;AVGPOST=0.9992;RSQ=0.9891;ERATE=0.0004;THETA=0.0006;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 26145614 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0269;AVGPOST=0.9983;RSQ=0.9719;ERATE=0.0003;THETA=0.0007;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 26145622 . C CT 63 PASS INDEL;BAVGPOST=1.000;BRSQ=0.717;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4603;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26145756 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0073;AVGPOST=0.9998;RSQ=0.9858;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26145762 . TGG T 42 PASS INDEL;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5951;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26145765 . AG A 21 PASS INDEL;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0018;AVGPOST=0.9978;RSQ=0.4963;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26145908 . T TGA 1353 PASS INDEL;BAVGPOST=0.913;BRSQ=0.575;LDAF=0.1059;AVGPOST=0.9059;RSQ=0.6359;ERATE=0.0040;THETA=0.0009;AC=174;AN=2184 GT:DS:GL:BD 0.07967033 0 1 26145910 . T TGA 1438 PASS INDEL;BAVGPOST=0.905;BRSQ=0.575;LDAF=0.1256;AVGPOST=0.8916;RSQ=0.6383;ERATE=0.0060;THETA=0.0004;AC=212;AN=2184 GT:DS:GL:BD 0.09706960 0 1 26145916 . TGTGTGA T 31601 PASS INDEL;BAVGPOST=0.818;BRSQ=0.451;LDAF=0.7617;AVGPOST=0.7718;RSQ=0.4686;ERATE=0.0447;THETA=0.0003;AC=1810;AN=2184 GT:DS:GL:BD 0.82875460 1 1 26145977 rs59834469 AG A 1696 PASS INDEL;BAVGPOST=0.997;BRSQ=0.924;LDAF=0.0230;AVGPOST=0.9962;RSQ=0.9429;ERATE=0.0005;THETA=0.0007;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 26145980 rs60360841 CA C 1774 PASS INDEL;BAVGPOST=0.997;BRSQ=0.942;LDAF=0.0302;AVGPOST=0.9961;RSQ=0.9520;ERATE=0.0004;THETA=0.0007;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 26146024 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0234;AVGPOST=0.9996;RSQ=0.9932;ERATE=0.0003;THETA=0.0008;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 26146338 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0146;AVGPOST=0.9954;RSQ=0.8603;ERATE=0.0008;THETA=0.0006;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26146348 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.478;LDAF=0.0088;AVGPOST=0.9885;RSQ=0.4613;ERATE=0.0011;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26146392 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8536;AVGPOST=0.9932;RSQ=0.9788;ERATE=0.0010;THETA=0.0049;AC=1868;AN=2184 GT:DS:GL:BD 0.85531133 1 1 26146449 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.2254;AVGPOST=0.9873;RSQ=0.9710;ERATE=0.0006;THETA=0.0009;AC=488;AN=2184 GT:DS:GL:BD 0.22344323 0 1 26146486 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.679;LDAF=0.0032;AVGPOST=0.9982;RSQ=0.7527;ERATE=0.0005;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26146512 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.687;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6554;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26146514 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.953;LDAF=0.4544;AVGPOST=0.9852;RSQ=0.9782;ERATE=0.0005;THETA=0.0004;AC=992;AN=2184 GT:DS:GL:BD 0.45421246 0 1 26146539 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8550;AVGPOST=0.9947;RSQ=0.9840;ERATE=0.0007;THETA=0.0017;AC=1870;AN=2184 GT:DS:GL:BD 0.85622710 1 1 26146602 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0097;AVGPOST=0.9979;RSQ=0.9013;ERATE=0.0006;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26146727 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0122;AVGPOST=0.9994;RSQ=0.9764;ERATE=0.0004;THETA=0.0018;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26146884 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.963;LDAF=0.7914;AVGPOST=0.9752;RSQ=0.9466;ERATE=0.0026;THETA=0.0006;AC=1735;AN=2184 GT:DS:GL:BD 0.79441392 1 1 26147059 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0272;AVGPOST=0.9973;RSQ=0.9569;ERATE=0.0008;THETA=0.0005;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 26147070 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0327;AVGPOST=0.9903;RSQ=0.8825;ERATE=0.0015;THETA=0.0048;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 26147079 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.711;LDAF=0.0044;AVGPOST=0.9956;RSQ=0.5847;ERATE=0.0005;THETA=0.0019;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26147132 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0124;AVGPOST=0.9952;RSQ=0.8273;ERATE=0.0008;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26147150 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.615;LDAF=0.0023;AVGPOST=0.9963;RSQ=0.3772;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26147242 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.8890;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26147333 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0098;AVGPOST=0.9994;RSQ=0.9733;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26147397 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0120;AVGPOST=0.9998;RSQ=0.9907;ERATE=0.0003;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26147463 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26147542 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0337;AVGPOST=0.9992;RSQ=0.9900;ERATE=0.0004;THETA=0.0009;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 26147543 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0311;AVGPOST=0.9991;RSQ=0.9877;ERATE=0.0004;THETA=0.0009;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 26147811 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0071;AVGPOST=0.9976;RSQ=0.8647;ERATE=0.0004;THETA=0.0009;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26147900 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.8942;ERATE=0.0005;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26148011 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8582;AVGPOST=0.9978;RSQ=0.9937;ERATE=0.0004;THETA=0.0005;AC=1874;AN=2184 GT:DS:GL:BD 0.85805863 1 1 26148041 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7975;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26148078 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0028;AVGPOST=0.9997;RSQ=0.9538;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26148300 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0073;AVGPOST=0.9988;RSQ=0.9440;ERATE=0.0003;THETA=0.0010;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26148423 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7494;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26148487 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26148540 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26148603 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.956;LDAF=0.0242;AVGPOST=0.9962;RSQ=0.9372;ERATE=0.0004;THETA=0.0030;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 26148819 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26148821 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.927;LDAF=0.0063;AVGPOST=0.9981;RSQ=0.8827;ERATE=0.0003;THETA=0.0010;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26148868 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0298;AVGPOST=0.9993;RSQ=0.9896;ERATE=0.0003;THETA=0.0006;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 26148941 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.982;LDAF=0.7918;AVGPOST=0.9965;RSQ=0.9929;ERATE=0.0006;THETA=0.0008;AC=1727;AN=2184 GT:DS:GL:BD 0.79075092 1 1 26149001 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7838;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26149031 . TTTTTG T 5452 PASS INDEL;BAVGPOST=0.892;BRSQ=0.730;LDAF=0.6992;AVGPOST=0.7441;RSQ=0.5320;ERATE=0.0267;THETA=0.0009;AC=1668;AN=2184 GT:DS:GL:BD 0.76373625 1 1 26149064 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.945;BRSQ=0.874;LDAF=0.7560;AVGPOST=0.8997;RSQ=0.8249;ERATE=0.0077;THETA=0.0006;AC=1686;AN=2184 GT:DS:GL:BD 0.77197802 1 1 26149138 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.666;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.3190;ERATE=0.0008;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26149166 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.575;LDAF=0.0115;AVGPOST=0.9915;RSQ=0.6886;ERATE=0.0008;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26149168 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.776;LDAF=0.0051;AVGPOST=0.9984;RSQ=0.8606;ERATE=0.0005;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26149183 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.955;BRSQ=0.891;LDAF=0.7815;AVGPOST=0.9419;RSQ=0.8861;ERATE=0.0120;THETA=0.0014;AC=1731;AN=2184 GT:DS:GL:BD 0.79258239 1 1 26149190 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9985;RSQ=0.8879;ERATE=0.0005;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26149257 rs34239512 TC T 10412 PASS INDEL;BAVGPOST=0.951;BRSQ=0.867;LDAF=0.2138;AVGPOST=0.9710;RSQ=0.9346;ERATE=0.0007;THETA=0.0003;AC=480;AN=2184 GT:DS:GL:BD 0.21978022 0 1 26149260 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4519;ERATE=0.0005;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26149301 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0058;AVGPOST=0.9993;RSQ=0.9554;ERATE=0.0003;THETA=0.0015;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26149316 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6523;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26149355 rs72508773 AGC A 29053 PASS INDEL;BAVGPOST=0.956;BRSQ=0.876;LDAF=0.7776;AVGPOST=0.9176;RSQ=0.8223;ERATE=0.0259;THETA=0.0016;AC=1746;AN=2184 GT:DS:GL:BD 0.79945058 1 1 26149356 rs72508773 GCT G 78984 PASS INDEL;BAVGPOST=0.991;BRSQ=0.971;LDAF=0.8302;AVGPOST=0.9970;RSQ=0.9916;ERATE=0.0009;THETA=0.0006;AC=1813;AN=2184 GT:DS:GL:BD 0.83012819 1 1 26149386 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26149387 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8455;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26149474 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26149784 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8526;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26150023 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7602;AVGPOST=0.9987;RSQ=0.9974;ERATE=0.0005;THETA=0.0010;AC=1659;AN=2184 GT:DS:GL:BD 0.75961536 1 1 26150098 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26150100 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.9154;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26150119 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26150202 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=0.9999;RSQ=0.9966;ERATE=0.0003;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26150218 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26150224 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26150266 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26150355 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0105;AVGPOST=0.9999;RSQ=0.9958;ERATE=0.0003;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26150543 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0087;AVGPOST=0.9998;RSQ=0.9881;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26150675 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7512;ERATE=0.0005;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26150695 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.850;LDAF=0.0106;AVGPOST=0.9971;RSQ=0.8837;ERATE=0.0006;THETA=0.0007;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26150724 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0107;AVGPOST=0.9996;RSQ=0.9838;ERATE=0.0003;THETA=0.0008;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26150876 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0406;AVGPOST=0.9973;RSQ=0.9728;ERATE=0.0004;THETA=0.0005;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 26150928 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.912;LDAF=0.0102;AVGPOST=0.9984;RSQ=0.9413;ERATE=0.0003;THETA=0.0010;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26151222 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5940;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26151353 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0019;AVGPOST=0.9994;RSQ=0.8660;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26151386 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0104;AVGPOST=0.9997;RSQ=0.9881;ERATE=0.0003;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26151482 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5696;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26151733 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26152081 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.988;LDAF=0.4899;AVGPOST=0.9869;RSQ=0.9800;ERATE=0.0010;THETA=0.0006;AC=1068;AN=2184 GT:DS:GL:BD 0.48901099 0 1 26152094 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0020;AVGPOST=0.9994;RSQ=0.8621;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26152423 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0311;AVGPOST=0.9995;RSQ=0.9924;ERATE=0.0003;THETA=0.0005;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 26152433 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6738;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26152469 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.675;LDAF=0.0018;AVGPOST=0.9988;RSQ=0.7555;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26152490 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26152652 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0398;AVGPOST=0.9998;RSQ=0.9979;ERATE=0.0003;THETA=0.0006;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 26152666 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.988;LDAF=0.8366;AVGPOST=0.9984;RSQ=0.9956;ERATE=0.0003;THETA=0.0003;AC=1827;AN=2184 GT:DS:GL:BD 0.83653843 1 1 26152705 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26152758 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8578;AVGPOST=0.9996;RSQ=0.9986;ERATE=0.0003;THETA=0.0009;AC=1873;AN=2184 GT:DS:GL:BD 0.85760075 1 1 26152835 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0230;AVGPOST=0.9997;RSQ=0.9946;ERATE=0.0003;THETA=0.0004;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 26152855 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9847;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26152873 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0119;AVGPOST=0.9998;RSQ=0.9931;ERATE=0.0003;THETA=0.0012;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26153029 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0078;AVGPOST=0.9998;RSQ=0.9907;ERATE=0.0003;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26153148 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26153175 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26153196 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7290;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26153204 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26153250 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26153640 rs11390742 T TC 165 PASS INDEL;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7152;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26153641 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0303;AVGPOST=0.9995;RSQ=0.9914;ERATE=0.0005;THETA=0.0006;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 26153674 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0022;AVGPOST=0.9986;RSQ=0.7416;ERATE=0.0004;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26153731 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.628;LDAF=0.0027;AVGPOST=0.9978;RSQ=0.6785;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26154072 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7587;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26154138 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.973;LDAF=0.8177;AVGPOST=0.9812;RSQ=0.9582;ERATE=0.0040;THETA=0.0012;AC=1794;AN=2184 GT:DS:GL:BD 0.82142860 1 1 26154175 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4968;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26154183 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0276;AVGPOST=0.9996;RSQ=0.9942;ERATE=0.0004;THETA=0.0005;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 26154290 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.635;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8096;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26154357 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0174;AVGPOST=0.9988;RSQ=0.9705;ERATE=0.0004;THETA=0.0006;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 26154507 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0066;AVGPOST=0.9997;RSQ=0.9765;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26154549 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26154661 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0048;AVGPOST=0.9989;RSQ=0.9126;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26154696 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9370;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26154697 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0275;AVGPOST=0.9998;RSQ=0.9970;ERATE=0.0003;THETA=0.0005;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 26154700 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4822;ERATE=0.0005;THETA=0.0038;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26154795 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.830;LDAF=0.0056;AVGPOST=0.9976;RSQ=0.8190;ERATE=0.0005;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26154812 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0405;AVGPOST=0.9991;RSQ=0.9926;ERATE=0.0003;THETA=0.0005;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 26154876 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.673;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4140;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26154905 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7582;AVGPOST=0.9955;RSQ=0.9926;ERATE=0.0005;THETA=0.0004;AC=1656;AN=2184 GT:DS:GL:BD 0.75824177 1 1 26154911 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0019;AVGPOST=0.9972;RSQ=0.3872;ERATE=0.0009;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26154919 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.693;LDAF=0.0052;AVGPOST=0.9952;RSQ=0.6259;ERATE=0.0007;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26154935 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8568;AVGPOST=0.9986;RSQ=0.9956;ERATE=0.0005;THETA=0.0034;AC=1872;AN=2184 GT:DS:GL:BD 0.85714287 1 1 26154964 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0397;AVGPOST=0.9992;RSQ=0.9910;ERATE=0.0004;THETA=0.0008;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 26155032 . CAG C 1050 PASS INDEL;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0069;AVGPOST=0.9990;RSQ=0.9348;ERATE=0.0005;THETA=0.0009;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26155158 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.748;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26155201 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8570;AVGPOST=0.9989;RSQ=0.9962;ERATE=0.0004;THETA=0.0005;AC=1872;AN=2184 GT:DS:GL:BD 0.85714287 1 1 26155261 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9553;ERATE=0.0003;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26155356 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8296;AVGPOST=0.9987;RSQ=0.9963;ERATE=0.0004;THETA=0.0005;AC=1812;AN=2184 GT:DS:GL:BD 0.82967031 1 1 26155368 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0042;AVGPOST=0.9987;RSQ=0.8581;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26155530 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.2289;AVGPOST=0.9941;RSQ=0.9874;ERATE=0.0005;THETA=0.0004;AC=497;AN=2184 GT:DS:GL:BD 0.22756410 0 1 26155550 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.4809;AVGPOST=0.9917;RSQ=0.9880;ERATE=0.0009;THETA=0.0007;AC=1049;AN=2184 GT:DS:GL:BD 0.48031136 0 1 26155657 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9283;ERATE=0.0007;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26155672 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0105;AVGPOST=0.9998;RSQ=0.9901;ERATE=0.0003;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26155674 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8580;AVGPOST=0.9980;RSQ=0.9942;ERATE=0.0004;THETA=0.0010;AC=1873;AN=2184 GT:DS:GL:BD 0.85760075 1 1 26155761 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0106;AVGPOST=0.9999;RSQ=0.9958;ERATE=0.0003;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26155784 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0178;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 26155806 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7901;AVGPOST=0.9995;RSQ=0.9987;ERATE=0.0003;THETA=0.0007;AC=1725;AN=2184 GT:DS:GL:BD 0.78983516 1 1 26155835 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26155945 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9294;ERATE=0.0004;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26156016 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26156074 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26156139 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26156359 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26156359 . C CA 51 PASS INDEL;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5239;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26156443 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7789;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26156492 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7189;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26156504 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7456;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26156578 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0397;AVGPOST=0.9993;RSQ=0.9926;ERATE=0.0004;THETA=0.0007;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 26156627 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0031;AVGPOST=0.9992;RSQ=0.8791;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26156718 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8090;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26156732 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.9039;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26156880 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7900;AVGPOST=0.9993;RSQ=0.9984;ERATE=0.0004;THETA=0.0006;AC=1725;AN=2184 GT:DS:GL:BD 0.78983516 1 1 26156885 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26156902 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7596;AVGPOST=0.9983;RSQ=0.9967;ERATE=0.0005;THETA=0.0004;AC=1659;AN=2184 GT:DS:GL:BD 0.75961536 1 1 26156913 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26157058 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.6626;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26157193 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0132;AVGPOST=0.9995;RSQ=0.9836;ERATE=0.0003;THETA=0.0012;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26157262 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8297;AVGPOST=0.9993;RSQ=0.9978;ERATE=0.0005;THETA=0.0005;AC=1812;AN=2184 GT:DS:GL:BD 0.82967031 1 1 26157324 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26157377 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6798;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26157385 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0112;AVGPOST=0.9990;RSQ=0.9658;ERATE=0.0003;THETA=0.0008;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26157490 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26157569 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8292;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26157636 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.773;LDAF=0.0035;AVGPOST=0.9980;RSQ=0.8043;ERATE=0.0005;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26157654 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7601;AVGPOST=0.9994;RSQ=0.9987;ERATE=0.0003;THETA=0.0006;AC=1659;AN=2184 GT:DS:GL:BD 0.75961536 1 1 26157836 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0027;AVGPOST=0.9990;RSQ=0.8206;ERATE=0.0009;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26157904 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7511;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26158303 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9799;ERATE=0.0005;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26158337 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8574;AVGPOST=0.9999;RSQ=0.9997;ERATE=0.0003;THETA=0.0005;AC=1872;AN=2184 GT:DS:GL:BD 0.85714287 1 1 26158355 . A AGAT 393 PASS INDEL;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0034;AVGPOST=0.9987;RSQ=0.8415;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26158370 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8689;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26158391 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26158461 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26158495 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26158498 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26158588 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0219;AVGPOST=0.9998;RSQ=0.9965;ERATE=0.0003;THETA=0.0007;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 26158900 rs5773135 A ACT 119212 PASS INDEL;BAVGPOST=0.996;BRSQ=0.983;LDAF=0.8580;AVGPOST=0.9936;RSQ=0.9807;ERATE=0.0006;THETA=0.0006;AC=1873;AN=2184 GT:DS:GL:BD 0.85760075 1 1 26158901 rs34376104 C CTA 30863 PASS INDEL;BAVGPOST=0.969;BRSQ=0.903;LDAF=0.8185;AVGPOST=0.9520;RSQ=0.8796;ERATE=0.0097;THETA=0.0007;AC=1808;AN=2184 GT:DS:GL:BD 0.82783884 1 1 26158902 rs72508774 T TCG 29948 PASS INDEL;BAVGPOST=0.972;BRSQ=0.911;LDAF=0.8328;AVGPOST=0.9648;RSQ=0.9099;ERATE=0.0029;THETA=0.0015;AC=1837;AN=2184 GT:DS:GL:BD 0.84111720 1 1 26158962 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8299;AVGPOST=0.9995;RSQ=0.9985;ERATE=0.0004;THETA=0.0009;AC=1812;AN=2184 GT:DS:GL:BD 0.82967031 1 1 26159085 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0065;AVGPOST=0.9998;RSQ=0.9830;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26159224 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8005;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26159225 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0361;AVGPOST=0.9988;RSQ=0.9880;ERATE=0.0003;THETA=0.0012;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 26159237 . AGAG A 84 PASS INDEL;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26159445 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6141;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26159562 . CT C 36 PASS INDEL;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6770;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26159595 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8366;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26159602 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0107;AVGPOST=0.9993;RSQ=0.9698;ERATE=0.0003;THETA=0.0009;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26159616 . C CT 69 PASS INDEL;BAVGPOST=0.998;BRSQ=0.498;LDAF=0.0022;AVGPOST=0.9980;RSQ=0.5917;ERATE=0.0009;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26159661 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.971;LDAF=0.0192;AVGPOST=0.9958;RSQ=0.9355;ERATE=0.0021;THETA=0.0005;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 26159675 . G GCTA 342 PASS INDEL;BAVGPOST=0.997;BRSQ=0.796;LDAF=0.0040;AVGPOST=0.9986;RSQ=0.8448;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26159729 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.5258;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26160017 . T TAATC 8667 PASS INDEL;BAVGPOST=0.996;BRSQ=0.929;LDAF=0.0301;AVGPOST=0.9978;RSQ=0.9684;ERATE=0.0004;THETA=0.0009;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 26160138 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.680;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5910;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26160241 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0123;AVGPOST=0.9991;RSQ=0.9652;ERATE=0.0005;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26160429 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.481;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6075;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26160651 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.671;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6066;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26160705 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26160722 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.972;LDAF=0.0392;AVGPOST=0.9970;RSQ=0.9705;ERATE=0.0005;THETA=0.0007;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 26160738 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26160828 . TG T 4126 PASS INDEL;BAVGPOST=0.996;BRSQ=0.940;LDAF=0.0316;AVGPOST=0.9977;RSQ=0.9648;ERATE=0.0007;THETA=0.0004;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 26160882 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.950;LDAF=0.0573;AVGPOST=0.9847;RSQ=0.9068;ERATE=0.0037;THETA=0.0024;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 26160952 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7367;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26160969 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.742;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26161008 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0398;AVGPOST=0.9976;RSQ=0.9773;ERATE=0.0005;THETA=0.0006;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 26161033 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9202;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26161037 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.978;LDAF=0.8195;AVGPOST=0.9822;RSQ=0.9564;ERATE=0.0030;THETA=0.0014;AC=1802;AN=2184 GT:DS:GL:BD 0.82509160 1 1 26161086 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.8210;AVGPOST=0.9824;RSQ=0.9557;ERATE=0.0015;THETA=0.0004;AC=1807;AN=2184 GT:DS:GL:BD 0.82738096 1 1 26161149 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.712;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7210;ERATE=0.0007;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26161310 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26161402 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8540;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26161466 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26161593 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8839;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26161628 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26161671 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26161768 . GTTTCACTGAT G 631 PASS INDEL;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0036;AVGPOST=0.9967;RSQ=0.6223;ERATE=0.0006;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26161826 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26161922 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26161924 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26162030 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0115;AVGPOST=0.9999;RSQ=0.9966;ERATE=0.0003;THETA=0.0016;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26162109 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26162158 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26162160 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26162173 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26162258 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26162259 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26162312 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26162313 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0233;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 26162341 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=1.0000;RSQ=0.9977;ERATE=0.0003;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26162489 . G GT 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5031;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26162496 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26162531 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26162599 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0100;AVGPOST=0.9993;RSQ=0.9785;ERATE=0.0003;THETA=0.0016;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26162653 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8498;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26162686 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0087;AVGPOST=0.9999;RSQ=0.9949;ERATE=0.0003;THETA=0.0014;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26162698 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0040;AVGPOST=0.9986;RSQ=0.8595;ERATE=0.0008;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26162809 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0100;AVGPOST=0.9996;RSQ=0.9849;ERATE=0.0003;THETA=0.0013;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26162851 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26162944 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=0.9991;RSQ=0.9494;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26163072 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.710;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26163107 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8299;AVGPOST=0.9993;RSQ=0.9978;ERATE=0.0004;THETA=0.0015;AC=1812;AN=2184 GT:DS:GL:BD 0.82967031 1 1 26163158 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8298;AVGPOST=0.9995;RSQ=0.9984;ERATE=0.0004;THETA=0.0006;AC=1812;AN=2184 GT:DS:GL:BD 0.82967031 1 1 26163192 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8537;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26163228 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0171;AVGPOST=0.9987;RSQ=0.9640;ERATE=0.0005;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 26163258 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.736;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26163445 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0032;AVGPOST=0.9994;RSQ=0.9363;ERATE=0.0004;THETA=0.0013;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26163469 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26163542 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8297;AVGPOST=0.9993;RSQ=0.9985;ERATE=0.0003;THETA=0.0014;AC=1812;AN=2184 GT:DS:GL:BD 0.82967031 1 1 26163552 . TAGAC T 974 PASS INDEL;BAVGPOST=0.999;BRSQ=0.772;LDAF=0.0032;AVGPOST=0.9986;RSQ=0.8153;ERATE=0.0003;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26163563 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0055;AVGPOST=0.9975;RSQ=0.8245;ERATE=0.0021;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26163607 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26163666 . CA C 6746 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0399;AVGPOST=0.9994;RSQ=0.9928;ERATE=0.0003;THETA=0.0012;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 26163763 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26163857 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0007;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26163877 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26163893 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26163974 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0105;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26164009 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26164118 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26164123 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0032;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26164410 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6426;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26164528 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.505;LDAF=0.0041;AVGPOST=0.9961;RSQ=0.6465;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26164558 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.768;LDAF=0.0154;AVGPOST=0.9928;RSQ=0.8025;ERATE=0.0007;THETA=0.0007;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26164675 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0039;AVGPOST=0.9982;RSQ=0.8276;ERATE=0.0005;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26164734 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.973;LDAF=0.8286;AVGPOST=0.9968;RSQ=0.9906;ERATE=0.0007;THETA=0.0009;AC=1812;AN=2184 GT:DS:GL:BD 0.82967031 1 1 26164762 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.515;LDAF=0.0045;AVGPOST=0.9944;RSQ=0.4849;ERATE=0.0012;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26164901 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0093;AVGPOST=0.9984;RSQ=0.9195;ERATE=0.0005;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26164934 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.762;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4566;ERATE=0.0006;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26164943 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.535;LDAF=0.0088;AVGPOST=0.9865;RSQ=0.3824;ERATE=0.0035;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26165051 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0276;AVGPOST=0.9997;RSQ=0.9947;ERATE=0.0003;THETA=0.0012;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 26165113 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8299;AVGPOST=0.9988;RSQ=0.9964;ERATE=0.0005;THETA=0.0004;AC=1812;AN=2184 GT:DS:GL:BD 0.82967031 1 1 26165122 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.5851;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26165139 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2291;AVGPOST=0.9918;RSQ=0.9826;ERATE=0.0004;THETA=0.0007;AC=502;AN=2184 GT:DS:GL:BD 0.22985348 0 1 26165387 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.8151;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26165491 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8297;AVGPOST=0.9989;RSQ=0.9971;ERATE=0.0005;THETA=0.0007;AC=1812;AN=2184 GT:DS:GL:BD 0.82967031 1 1 26165525 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8299;AVGPOST=0.9995;RSQ=0.9984;ERATE=0.0004;THETA=0.0005;AC=1812;AN=2184 GT:DS:GL:BD 0.82967031 1 1 26165705 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26165782 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8297;AVGPOST=0.9987;RSQ=0.9962;ERATE=0.0005;THETA=0.0004;AC=1812;AN=2184 GT:DS:GL:BD 0.82967031 1 1 26165810 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9068;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26165881 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26165896 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0051;AVGPOST=0.9986;RSQ=0.8999;ERATE=0.0004;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26165925 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0101;AVGPOST=0.9991;RSQ=0.9707;ERATE=0.0003;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26165966 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7117;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26166160 . C CT 676 PASS INDEL;BAVGPOST=0.951;BRSQ=0.531;LDAF=0.0856;AVGPOST=0.9011;RSQ=0.4908;ERATE=0.0295;THETA=0.0007;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 26166248 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0243;AVGPOST=0.9962;RSQ=0.9347;ERATE=0.0006;THETA=0.0003;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 26166345 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.693;LDAF=0.0019;AVGPOST=0.9977;RSQ=0.5338;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26166356 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.663;LDAF=0.0048;AVGPOST=0.9968;RSQ=0.7339;ERATE=0.0005;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26166401 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0107;AVGPOST=0.9995;RSQ=0.9754;ERATE=0.0004;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26166417 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0090;AVGPOST=0.9992;RSQ=0.9592;ERATE=0.0005;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26166473 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0359;AVGPOST=0.9989;RSQ=0.9898;ERATE=0.0003;THETA=0.0006;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 26166667 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0179;AVGPOST=0.9998;RSQ=0.9940;ERATE=0.0003;THETA=0.0005;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 26166668 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0216;AVGPOST=0.9998;RSQ=0.9950;ERATE=0.0003;THETA=0.0005;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 26166720 . T TA 338 PASS INDEL;BAVGPOST=0.994;BRSQ=0.640;LDAF=0.0121;AVGPOST=0.9872;RSQ=0.5556;ERATE=0.0032;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26166748 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5415;ERATE=0.0004;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26166787 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0034;AVGPOST=0.9973;RSQ=0.6556;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26166790 . AG A 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26166871 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9119;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26167592 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0038;AVGPOST=0.9982;RSQ=0.8104;ERATE=0.0004;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26167600 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0217;AVGPOST=0.9995;RSQ=0.9900;ERATE=0.0005;THETA=0.0004;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 26167613 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1695;AVGPOST=0.9989;RSQ=0.9972;ERATE=0.0004;THETA=0.0022;AC=370;AN=2184 GT:DS:GL:BD 0.16941392 0 1 26167622 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1696;AVGPOST=0.9990;RSQ=0.9977;ERATE=0.0003;THETA=0.0004;AC=370;AN=2184 GT:DS:GL:BD 0.16941392 0 1 26167786 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1705;AVGPOST=0.9975;RSQ=0.9943;ERATE=0.0004;THETA=0.0010;AC=372;AN=2184 GT:DS:GL:BD 0.17032968 0 1 26167843 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2399;AVGPOST=0.9975;RSQ=0.9957;ERATE=0.0006;THETA=0.0007;AC=525;AN=2184 GT:DS:GL:BD 0.24038461 0 1 26167958 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.5519;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26168004 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2093;AVGPOST=0.9988;RSQ=0.9976;ERATE=0.0004;THETA=0.0004;AC=457;AN=2184 GT:DS:GL:BD 0.20924908 0 1 26168035 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.475;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.3893;ERATE=0.0008;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26168112 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.562;LDAF=0.0025;AVGPOST=0.9982;RSQ=0.6958;ERATE=0.0005;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26168198 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.940;LDAF=0.0390;AVGPOST=0.9976;RSQ=0.9749;ERATE=0.0005;THETA=0.0004;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 26168236 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0039;AVGPOST=0.9972;RSQ=0.6724;ERATE=0.0006;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26168307 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.826;LDAF=0.0204;AVGPOST=0.9923;RSQ=0.8425;ERATE=0.0005;THETA=0.0011;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 26168340 . TG T 213 PASS INDEL;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0027;AVGPOST=0.9986;RSQ=0.7608;ERATE=0.0006;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26168348 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0038;AVGPOST=0.9987;RSQ=0.8824;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26168428 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8084;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26168504 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5677;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26168611 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9558;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26168672 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0061;AVGPOST=0.9989;RSQ=0.9281;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26168683 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1698;AVGPOST=0.9990;RSQ=0.9973;ERATE=0.0003;THETA=0.0005;AC=372;AN=2184 GT:DS:GL:BD 0.17032968 0 1 26168781 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7730;AVGPOST=0.9949;RSQ=0.9879;ERATE=0.0004;THETA=0.0008;AC=1689;AN=2184 GT:DS:GL:BD 0.77335167 1 1 26168791 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6010;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26168868 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6833;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26168869 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8394;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26168914 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0093;AVGPOST=0.9983;RSQ=0.9290;ERATE=0.0005;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26168929 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26169004 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26169062 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6174;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26169075 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9320;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26169455 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.843;LDAF=0.0101;AVGPOST=0.9959;RSQ=0.8657;ERATE=0.0004;THETA=0.0012;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26169478 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.986;LDAF=0.1425;AVGPOST=0.9987;RSQ=0.9956;ERATE=0.0004;THETA=0.0008;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 26169514 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0065;AVGPOST=0.9980;RSQ=0.9069;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26169674 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.892;BRSQ=0.486;LDAF=0.1545;AVGPOST=0.8468;RSQ=0.5296;ERATE=0.0193;THETA=0.0006;AC=226;AN=2184 GT:DS:GL:BD 0.10347985 0 1 26169676 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.740;BRSQ=0.542;LDAF=0.5589;AVGPOST=0.7389;RSQ=0.5535;ERATE=0.0670;THETA=0.0006;AC=1265;AN=2184 GT:DS:GL:BD 0.57921243 1 1 26169819 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9998;RSQ=0.9895;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26169873 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1700;AVGPOST=0.9980;RSQ=0.9945;ERATE=0.0005;THETA=0.0010;AC=372;AN=2184 GT:DS:GL:BD 0.17032968 0 1 26169908 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0278;AVGPOST=0.9992;RSQ=0.9882;ERATE=0.0004;THETA=0.0007;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 26169982 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0062;AVGPOST=0.9989;RSQ=0.9215;ERATE=0.0003;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26170009 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6733;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26170068 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1691;AVGPOST=0.9972;RSQ=0.9925;ERATE=0.0005;THETA=0.0011;AC=372;AN=2184 GT:DS:GL:BD 0.17032968 0 1 26170114 . AG A 6876 PASS INDEL;BAVGPOST=0.974;BRSQ=0.909;LDAF=0.1596;AVGPOST=0.9851;RSQ=0.9621;ERATE=0.0005;THETA=0.0008;AC=356;AN=2184 GT:DS:GL:BD 0.16300367 0 1 26170115 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.885;LDAF=0.1627;AVGPOST=0.9552;RSQ=0.8840;ERATE=0.0084;THETA=0.0008;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 26170151 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1701;AVGPOST=0.9990;RSQ=0.9973;ERATE=0.0004;THETA=0.0009;AC=372;AN=2184 GT:DS:GL:BD 0.17032968 0 1 26170404 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0023;AVGPOST=0.9967;RSQ=0.5499;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26170413 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0089;AVGPOST=0.9988;RSQ=0.9400;ERATE=0.0005;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26170628 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1702;AVGPOST=0.9990;RSQ=0.9970;ERATE=0.0005;THETA=0.0006;AC=372;AN=2184 GT:DS:GL:BD 0.17032968 0 1 26170658 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.686;LDAF=0.0065;AVGPOST=0.9950;RSQ=0.7499;ERATE=0.0005;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26170684 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.928;LDAF=0.1710;AVGPOST=0.9975;RSQ=0.9928;ERATE=0.0007;THETA=0.0005;AC=374;AN=2184 GT:DS:GL:BD 0.17124543 0 1 26170685 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.684;LDAF=0.0041;AVGPOST=0.9945;RSQ=0.4594;ERATE=0.0013;THETA=0.0020;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26170758 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0021;AVGPOST=0.9989;RSQ=0.7759;ERATE=0.0005;THETA=0.0019;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26170787 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1434;AVGPOST=0.9980;RSQ=0.9941;ERATE=0.0005;THETA=0.0007;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 26170886 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7890;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26171038 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0053;AVGPOST=0.9994;RSQ=0.9490;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26171125 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0037;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26171175 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26171179 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6168;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26171431 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26171473 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0120;AVGPOST=0.9998;RSQ=0.9907;ERATE=0.0003;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26171550 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1700;AVGPOST=0.9995;RSQ=0.9985;ERATE=0.0004;THETA=0.0026;AC=372;AN=2184 GT:DS:GL:BD 0.17032968 0 1 26171727 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0052;AVGPOST=0.9986;RSQ=0.8940;ERATE=0.0004;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26171735 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0218;AVGPOST=0.9995;RSQ=0.9891;ERATE=0.0003;THETA=0.0011;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 26171763 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0034;AVGPOST=0.9983;RSQ=0.8111;ERATE=0.0007;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26172051 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0099;AVGPOST=0.9992;RSQ=0.9692;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26172088 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26172107 . TC T 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26172111 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2098;AVGPOST=0.9996;RSQ=0.9991;ERATE=0.0004;THETA=0.0007;AC=459;AN=2184 GT:DS:GL:BD 0.21016483 0 1 26172152 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.8054;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26172175 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7172;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26172222 . CA C 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26172328 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8902;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26172385 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6322;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26172430 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5224;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26172431 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1699;AVGPOST=0.9995;RSQ=0.9987;ERATE=0.0003;THETA=0.0005;AC=372;AN=2184 GT:DS:GL:BD 0.17032968 0 1 26172503 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.7958;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26172541 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0277;AVGPOST=0.9994;RSQ=0.9913;ERATE=0.0003;THETA=0.0011;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 26172633 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.645;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4886;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26172746 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0219;AVGPOST=0.9990;RSQ=0.9799;ERATE=0.0004;THETA=0.0006;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 26172882 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0407;AVGPOST=0.9981;RSQ=0.9792;ERATE=0.0007;THETA=0.0005;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 26173090 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7826;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26173098 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.973;LDAF=0.1697;AVGPOST=0.9970;RSQ=0.9919;ERATE=0.0004;THETA=0.0008;AC=373;AN=2184 GT:DS:GL:BD 0.17078754 0 1 26173117 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7300;ERATE=0.0008;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26173120 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.949;LDAF=0.1415;AVGPOST=0.9965;RSQ=0.9886;ERATE=0.0005;THETA=0.0005;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 26173177 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7587;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26173235 . A AT 1460 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0122;AVGPOST=0.9980;RSQ=0.9336;ERATE=0.0006;THETA=0.0009;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26173385 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0068;AVGPOST=0.9992;RSQ=0.9496;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26173391 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.5411;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26173399 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9989;RSQ=0.9153;ERATE=0.0004;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26173425 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5871;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26173468 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0049;AVGPOST=0.9987;RSQ=0.8955;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26173552 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0119;AVGPOST=1.0000;RSQ=0.9981;ERATE=0.0003;THETA=0.0008;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26173747 . G GT 9446 PASS INDEL;BAVGPOST=0.975;BRSQ=0.921;LDAF=0.1714;AVGPOST=0.9776;RSQ=0.9430;ERATE=0.0043;THETA=0.0006;AC=372;AN=2184 GT:DS:GL:BD 0.17032968 0 1 26173756 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.920;LDAF=0.1639;AVGPOST=0.9778;RSQ=0.9405;ERATE=0.0033;THETA=0.0005;AC=354;AN=2184 GT:DS:GL:BD 0.16208792 0 1 26173757 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.936;LDAF=0.1586;AVGPOST=0.9874;RSQ=0.9665;ERATE=0.0008;THETA=0.0006;AC=353;AN=2184 GT:DS:GL:BD 0.16163003 0 1 26173761 . G GT 37 PASS INDEL;BAVGPOST=0.989;BRSQ=0.487;LDAF=0.0212;AVGPOST=0.9679;RSQ=0.3983;ERATE=0.0061;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26173765 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5181;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26173776 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.924;LDAF=0.0165;AVGPOST=0.9952;RSQ=0.8955;ERATE=0.0007;THETA=0.0007;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 26173815 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6495;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26173820 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0276;AVGPOST=0.9995;RSQ=0.9925;ERATE=0.0004;THETA=0.0008;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 26173915 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4255;ERATE=0.0007;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26173963 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0183;AVGPOST=0.9989;RSQ=0.9712;ERATE=0.0005;THETA=0.0007;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 26174076 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0021;AVGPOST=0.9983;RSQ=0.6645;ERATE=0.0009;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26174128 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7708;AVGPOST=0.9937;RSQ=0.9852;ERATE=0.0005;THETA=0.0009;AC=1685;AN=2184 GT:DS:GL:BD 0.77152014 1 1 26174179 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0054;AVGPOST=0.9993;RSQ=0.9452;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26174309 . GCCTGTGGT G 2061 PASS INDEL;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0111;AVGPOST=0.9988;RSQ=0.9516;ERATE=0.0004;THETA=0.0014;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26174335 . CT C 2426 PASS INDEL;BAVGPOST=0.995;BRSQ=0.895;LDAF=0.0199;AVGPOST=0.9903;RSQ=0.8209;ERATE=0.0005;THETA=0.0007;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 26174420 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0409;AVGPOST=0.9995;RSQ=0.9943;ERATE=0.0003;THETA=0.0005;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 26174522 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.873;LDAF=0.0100;AVGPOST=0.9968;RSQ=0.8753;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26174571 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9370;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26174576 . C CTCAAATACATT 5810 PASS INDEL;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0117;AVGPOST=0.9989;RSQ=0.9605;ERATE=0.0006;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26174632 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8829;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26174721 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7212;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26174738 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6738;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26174846 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.766;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7691;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26174847 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.522;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7698;ERATE=0.0005;THETA=0.0045;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26174912 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.653;LDAF=0.0027;AVGPOST=0.9963;RSQ=0.4564;ERATE=0.0008;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26174921 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2392;AVGPOST=0.9979;RSQ=0.9961;ERATE=0.0005;THETA=0.0005;AC=525;AN=2184 GT:DS:GL:BD 0.24038461 0 1 26174974 rs60491427 C CA 1131 PASS INDEL;BAVGPOST=0.588;BRSQ=0.173;LDAF=0.3712;AVGPOST=0.6190;RSQ=0.2621;ERATE=0.0560;THETA=0.0003;AC=548;AN=2184 GT:DS:GL:BD 0.25091577 0 1 26175018 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.700;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.5106;ERATE=0.0006;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26175109 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9997;RSQ=0.9858;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26175369 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1697;AVGPOST=0.9991;RSQ=0.9978;ERATE=0.0004;THETA=0.0005;AC=371;AN=2184 GT:DS:GL:BD 0.16987179 0 1 26175439 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5224;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26175487 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26175518 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2093;AVGPOST=0.9984;RSQ=0.9970;ERATE=0.0004;THETA=0.0005;AC=459;AN=2184 GT:DS:GL:BD 0.21016483 0 1 26175600 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8526;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26175722 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6737;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26175846 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1695;AVGPOST=0.9977;RSQ=0.9949;ERATE=0.0005;THETA=0.0008;AC=369;AN=2184 GT:DS:GL:BD 0.16895604 0 1 26175917 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9285;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26175989 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.943;LDAF=0.0163;AVGPOST=0.9984;RSQ=0.9609;ERATE=0.0003;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 26175993 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0171;AVGPOST=0.9996;RSQ=0.9904;ERATE=0.0004;THETA=0.0007;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 26176074 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9999;RSQ=0.9937;ERATE=0.0003;THETA=0.0008;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26176080 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26176100 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0275;AVGPOST=0.9998;RSQ=0.9970;ERATE=0.0003;THETA=0.0009;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 26176185 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.783;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8384;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26176407 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0056;AVGPOST=0.9988;RSQ=0.9191;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26176547 . CAG C 67 PASS INDEL;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0015;AVGPOST=0.9992;RSQ=0.7926;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26176572 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7691;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26176575 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9311;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26176588 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0023;AVGPOST=0.9998;RSQ=0.9537;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26176592 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9182;ERATE=0.0004;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26176632 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7910;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26176728 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.968;LDAF=0.0275;AVGPOST=0.9996;RSQ=0.9940;ERATE=0.0004;THETA=0.0007;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 26176744 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1876;AVGPOST=0.9989;RSQ=0.9972;ERATE=0.0004;THETA=0.0005;AC=410;AN=2184 GT:DS:GL:BD 0.18772894 0 1 26176787 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.803;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8369;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26176952 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26177016 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0087;AVGPOST=0.9996;RSQ=0.9806;ERATE=0.0003;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26177218 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26177272 rs34665456 AT A 13586 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1703;AVGPOST=0.9978;RSQ=0.9943;ERATE=0.0006;THETA=0.0004;AC=371;AN=2184 GT:DS:GL:BD 0.16987179 0 1 26177383 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=0.9998;RSQ=0.9895;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26177407 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26177512 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1428;AVGPOST=0.9995;RSQ=0.9983;ERATE=0.0004;THETA=0.0011;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 26177534 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7974;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26177582 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0025;AVGPOST=0.9991;RSQ=0.8465;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26177862 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.4468;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26177877 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26177899 . CTTCTA C 166 PASS INDEL;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7447;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26177968 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9450;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26177989 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1703;AVGPOST=0.9987;RSQ=0.9964;ERATE=0.0005;THETA=0.0007;AC=372;AN=2184 GT:DS:GL:BD 0.17032968 0 1 26178267 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0118;AVGPOST=0.9952;RSQ=0.8562;ERATE=0.0007;THETA=0.0027;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26178297 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.676;LDAF=0.0028;AVGPOST=0.9979;RSQ=0.7142;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26178436 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7873;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26178536 rs113030725 CT C 5180 PASS INDEL;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0305;AVGPOST=0.9989;RSQ=0.9867;ERATE=0.0005;THETA=0.0020;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 26178680 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2369;AVGPOST=0.9967;RSQ=0.9946;ERATE=0.0004;THETA=0.0003;AC=520;AN=2184 GT:DS:GL:BD 0.23809524 0 1 26178866 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.690;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26178949 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.952;BRSQ=0.914;LDAF=0.4520;AVGPOST=0.9342;RSQ=0.8997;ERATE=0.0124;THETA=0.0010;AC=1003;AN=2184 GT:DS:GL:BD 0.45924908 0 1 26178951 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.922;BRSQ=0.783;LDAF=0.2292;AVGPOST=0.8695;RSQ=0.7104;ERATE=0.0381;THETA=0.0006;AC=446;AN=2184 GT:DS:GL:BD 0.20421246 0 1 26178953 . TG T 34779 PASS INDEL;BAVGPOST=0.981;BRSQ=0.276;LDAF=0.9888;AVGPOST=0.9802;RSQ=0.2745;ERATE=0.0023;THETA=0.0006;AC=2179;AN=2184 GT:DS:GL:BD 0.99771065 1 1 26178954 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.933;BRSQ=0.384;LDAF=0.9201;AVGPOST=0.8966;RSQ=0.4595;ERATE=0.0202;THETA=0.0010;AC=2077;AN=2184 GT:DS:GL:BD 0.95100731 1 1 26179038 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.480;LDAF=0.0046;AVGPOST=0.9948;RSQ=0.5388;ERATE=0.0006;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26179090 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.948;LDAF=0.7496;AVGPOST=0.9636;RSQ=0.9243;ERATE=0.0038;THETA=0.0011;AC=1653;AN=2184 GT:DS:GL:BD 0.75686812 1 1 26179229 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0029;AVGPOST=0.9968;RSQ=0.5981;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26179231 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7800;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26179260 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6094;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26179304 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0001;AVGPOST=0.9998;RSQ=0.0498;ERATE=0.0003;THETA=0.0013;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26179489 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7326;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26179578 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0064;AVGPOST=0.9990;RSQ=0.9396;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26179617 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.710;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6973;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26179748 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6046;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26179791 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7335;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26179806 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0056;AVGPOST=0.9973;RSQ=0.8087;ERATE=0.0005;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26179807 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0109;AVGPOST=0.9989;RSQ=0.9538;ERATE=0.0004;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26180088 . AAAAC A 202 PASS INDEL;BAVGPOST=1.000;BRSQ=0.667;LDAF=0.0027;AVGPOST=0.9968;RSQ=0.5137;ERATE=0.0008;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26180121 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.799;LDAF=0.0026;AVGPOST=0.9982;RSQ=0.7699;ERATE=0.0005;THETA=0.0037;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26180155 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1416;AVGPOST=0.9987;RSQ=0.9961;ERATE=0.0004;THETA=0.0011;AC=310;AN=2184 GT:DS:GL:BD 0.14194140 0 1 26180162 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0232;AVGPOST=0.9993;RSQ=0.9890;ERATE=0.0004;THETA=0.0005;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 26180432 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.4806;AVGPOST=0.9935;RSQ=0.9897;ERATE=0.0006;THETA=0.0006;AC=1049;AN=2184 GT:DS:GL:BD 0.48031136 0 1 26180438 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0089;AVGPOST=0.9993;RSQ=0.9616;ERATE=0.0004;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26180444 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.981;LDAF=0.0971;AVGPOST=0.9953;RSQ=0.9837;ERATE=0.0003;THETA=0.0012;AC=212;AN=2184 GT:DS:GL:BD 0.09706960 0 1 26180483 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6434;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26180508 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0094;AVGPOST=0.9984;RSQ=0.9329;ERATE=0.0004;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26180555 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0125;AVGPOST=0.9961;RSQ=0.8858;ERATE=0.0004;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26180574 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1700;AVGPOST=0.9953;RSQ=0.9883;ERATE=0.0011;THETA=0.0008;AC=370;AN=2184 GT:DS:GL:BD 0.16941392 0 1 26180578 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0059;AVGPOST=0.9985;RSQ=0.9061;ERATE=0.0004;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26180782 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.9098;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26180857 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0004;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26180996 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7918;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26181020 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26181100 . AAG A 2935 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0170;AVGPOST=0.9994;RSQ=0.9840;ERATE=0.0004;THETA=0.0010;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 26181108 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2876;AVGPOST=0.9994;RSQ=0.9990;ERATE=0.0004;THETA=0.0012;AC=629;AN=2184 GT:DS:GL:BD 0.28800365 0 1 26181243 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5903;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26181263 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9806;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26181292 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0120;AVGPOST=0.9998;RSQ=0.9913;ERATE=0.0003;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26181324 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0230;AVGPOST=0.9998;RSQ=0.9954;ERATE=0.0003;THETA=0.0007;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 26181355 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0274;AVGPOST=1.0000;RSQ=0.9992;ERATE=0.0003;THETA=0.0008;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 26181441 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.773;LDAF=0.0062;AVGPOST=0.9961;RSQ=0.7446;ERATE=0.0007;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26181509 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1696;AVGPOST=0.9984;RSQ=0.9953;ERATE=0.0005;THETA=0.0006;AC=371;AN=2184 GT:DS:GL:BD 0.16987179 0 1 26181597 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5390;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26181787 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8830;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26181834 . AT A 71 PASS INDEL;BAVGPOST=0.999;BRSQ=0.650;LDAF=0.0025;AVGPOST=0.9985;RSQ=0.7320;ERATE=0.0005;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26181934 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.674;LDAF=0.0031;AVGPOST=0.9969;RSQ=0.5629;ERATE=0.0010;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26181972 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.767;LDAF=0.0059;AVGPOST=0.9944;RSQ=0.6114;ERATE=0.0021;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26182101 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6684;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26182282 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1702;AVGPOST=0.9992;RSQ=0.9981;ERATE=0.0003;THETA=0.0007;AC=372;AN=2184 GT:DS:GL:BD 0.17032968 0 1 26182465 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.723;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26182497 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6710;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26182568 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0019;AVGPOST=0.9982;RSQ=0.6714;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26182682 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7311;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26182728 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.428;LDAF=0.0075;AVGPOST=0.9881;RSQ=0.3782;ERATE=0.0026;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26182863 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.978;LDAF=0.0972;AVGPOST=0.9956;RSQ=0.9815;ERATE=0.0011;THETA=0.0005;AC=212;AN=2184 GT:DS:GL:BD 0.09706960 0 1 26182931 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26182933 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0225;AVGPOST=0.9987;RSQ=0.9752;ERATE=0.0005;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 26183040 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0088;AVGPOST=0.9995;RSQ=0.9707;ERATE=0.0004;THETA=0.0010;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26183069 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0033;AVGPOST=0.9975;RSQ=0.7111;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26183103 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0112;AVGPOST=0.9971;RSQ=0.8841;ERATE=0.0007;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26183160 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6196;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26183166 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.855;LDAF=0.0022;AVGPOST=0.9986;RSQ=0.7397;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26183167 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0025;AVGPOST=0.9987;RSQ=0.7925;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26183170 . A AAAC 2492 PASS INDEL;BAVGPOST=0.988;BRSQ=0.784;LDAF=0.0346;AVGPOST=0.9790;RSQ=0.7369;ERATE=0.0039;THETA=0.0011;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 26183180 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7529;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26183225 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4943;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26183288 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26183302 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6947;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26183366 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.1421;AVGPOST=0.9984;RSQ=0.9945;ERATE=0.0004;THETA=0.0006;AC=311;AN=2184 GT:DS:GL:BD 0.14239927 0 1 26183475 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1855;AVGPOST=0.9979;RSQ=0.9943;ERATE=0.0005;THETA=0.0023;AC=406;AN=2184 GT:DS:GL:BD 0.18589744 0 1 26183538 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.725;LDAF=0.0017;AVGPOST=0.9979;RSQ=0.4688;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26183568 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0098;AVGPOST=0.9995;RSQ=0.9794;ERATE=0.0004;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26183633 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5932;ERATE=0.0004;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26183638 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26183796 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0167;AVGPOST=0.9902;RSQ=0.7932;ERATE=0.0010;THETA=0.0007;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 26183815 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.365;LDAF=0.0024;AVGPOST=0.9976;RSQ=0.5706;ERATE=0.0007;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26183934 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.958;LDAF=0.1692;AVGPOST=0.9944;RSQ=0.9839;ERATE=0.0008;THETA=0.0006;AC=368;AN=2184 GT:DS:GL:BD 0.16849817 0 1 26184035 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1428;AVGPOST=0.9968;RSQ=0.9896;ERATE=0.0005;THETA=0.0020;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 26184037 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8096;ERATE=0.0005;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26184076 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.865;LDAF=0.9008;AVGPOST=0.9689;RSQ=0.8720;ERATE=0.0009;THETA=0.0021;AC=1980;AN=2184 GT:DS:GL:BD 0.90659338 1 1 26184232 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.894;LDAF=0.0437;AVGPOST=0.9905;RSQ=0.9208;ERATE=0.0010;THETA=0.0011;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 26184277 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0106;AVGPOST=0.9973;RSQ=0.8934;ERATE=0.0006;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26184290 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.628;LDAF=0.0038;AVGPOST=0.9942;RSQ=0.4197;ERATE=0.0007;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26184372 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.614;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5722;ERATE=0.0006;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26184584 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0080;AVGPOST=0.9986;RSQ=0.9193;ERATE=0.0005;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26184691 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2398;AVGPOST=0.9972;RSQ=0.9945;ERATE=0.0004;THETA=0.0006;AC=523;AN=2184 GT:DS:GL:BD 0.23946886 0 1 26184694 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5489;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26184709 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0107;AVGPOST=0.9996;RSQ=0.9813;ERATE=0.0004;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26184741 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6343;ERATE=0.0003;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26184773 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7301;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26184910 . GTC G 184 PASS INDEL;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0043;AVGPOST=0.9972;RSQ=0.7574;ERATE=0.0004;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26184987 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.689;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.8474;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26185015 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0285;AVGPOST=0.9988;RSQ=0.9851;ERATE=0.0003;THETA=0.0007;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 26185155 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0111;AVGPOST=0.9995;RSQ=0.9806;ERATE=0.0003;THETA=0.0011;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26185158 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26185200 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26185314 . AG A 36 PASS INDEL;BAVGPOST=1.000;BRSQ=0.750;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4192;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26185340 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0036;AVGPOST=0.9991;RSQ=0.8874;ERATE=0.0004;THETA=0.0012;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26185344 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1695;AVGPOST=0.9971;RSQ=0.9918;ERATE=0.0004;THETA=0.0034;AC=370;AN=2184 GT:DS:GL:BD 0.16941392 0 1 26185583 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8943;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26185597 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0910;AVGPOST=0.9996;RSQ=0.9982;ERATE=0.0003;THETA=0.0005;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 26185718 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9282;ERATE=0.0004;THETA=0.0020;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26185812 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0057;AVGPOST=0.9988;RSQ=0.9138;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26185859 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.912;LDAF=0.0099;AVGPOST=0.9994;RSQ=0.9699;ERATE=0.0003;THETA=0.0010;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26185866 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0136;AVGPOST=0.9968;RSQ=0.9129;ERATE=0.0005;THETA=0.0010;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26185882 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.749;LDAF=0.0024;AVGPOST=0.9978;RSQ=0.6323;ERATE=0.0007;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26185896 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.761;LDAF=0.0073;AVGPOST=0.9936;RSQ=0.6480;ERATE=0.0008;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26185928 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.573;LDAF=0.0028;AVGPOST=0.9972;RSQ=0.5227;ERATE=0.0009;THETA=0.0036;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26186130 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.965;LDAF=0.0327;AVGPOST=0.9952;RSQ=0.9411;ERATE=0.0008;THETA=0.0006;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 26186346 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.627;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4116;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26186512 rs35337214 G GT 19748 PASS INDEL;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1016;AVGPOST=0.9982;RSQ=0.9936;ERATE=0.0004;THETA=0.0004;AC=223;AN=2184 GT:DS:GL:BD 0.10210623 0 1 26186581 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0293;AVGPOST=0.9998;RSQ=0.9971;ERATE=0.0003;THETA=0.0009;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 26186654 . T TA 732 PASS INDEL;BAVGPOST=0.942;BRSQ=0.662;LDAF=0.1160;AVGPOST=0.9015;RSQ=0.6361;ERATE=0.0061;THETA=0.0005;AC=182;AN=2184 GT:DS:GL:BD 0.08333334 0 1 26186661 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.917;LDAF=0.0061;AVGPOST=0.9979;RSQ=0.8860;ERATE=0.0003;THETA=0.0013;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26186663 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.1056;AVGPOST=0.9938;RSQ=0.9787;ERATE=0.0011;THETA=0.0006;AC=226;AN=2184 GT:DS:GL:BD 0.10347985 0 1 26186664 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0156;AVGPOST=0.9990;RSQ=0.9709;ERATE=0.0005;THETA=0.0011;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26186678 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.819;LDAF=0.0119;AVGPOST=0.9931;RSQ=0.7660;ERATE=0.0005;THETA=0.0043;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26187085 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26187195 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.704;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4447;ERATE=0.0007;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26187332 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1022;AVGPOST=0.9987;RSQ=0.9951;ERATE=0.0004;THETA=0.0008;AC=224;AN=2184 GT:DS:GL:BD 0.10256410 0 1 26187364 . ATATT A 3193 PASS INDEL;BAVGPOST=0.998;BRSQ=0.960;LDAF=0.0254;AVGPOST=0.9970;RSQ=0.9549;ERATE=0.0007;THETA=0.0008;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 26187370 . ATT A 364 PASS INDEL;BAVGPOST=0.995;BRSQ=0.880;LDAF=0.0201;AVGPOST=0.9922;RSQ=0.8518;ERATE=0.0009;THETA=0.0009;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 26187488 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.813;LDAF=0.0044;AVGPOST=0.9992;RSQ=0.9131;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26187607 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0110;AVGPOST=0.9989;RSQ=0.9575;ERATE=0.0004;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26187624 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0112;AVGPOST=0.9982;RSQ=0.9307;ERATE=0.0005;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26187651 . CA C 139 PASS INDEL;BAVGPOST=0.999;BRSQ=0.835;LDAF=0.0053;AVGPOST=0.9966;RSQ=0.7313;ERATE=0.0006;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26187671 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0053;AVGPOST=0.9982;RSQ=0.8554;ERATE=0.0004;THETA=0.0010;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26187778 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.9984;AVGPOST=0.9983;RSQ=0.5288;ERATE=0.0007;THETA=0.0008;AC=2182;AN=2184 GT:DS:GL:BD 0.99908423 1 1 26187898 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.452;LDAF=0.0024;AVGPOST=0.9963;RSQ=0.3365;ERATE=0.0012;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26187975 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1021;AVGPOST=0.9995;RSQ=0.9979;ERATE=0.0005;THETA=0.0008;AC=223;AN=2184 GT:DS:GL:BD 0.10210623 0 1 26188028 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.8029;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26188238 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.4803;AVGPOST=0.9931;RSQ=0.9885;ERATE=0.0005;THETA=0.0007;AC=1051;AN=2184 GT:DS:GL:BD 0.48122710 0 1 26188247 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.606;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4344;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26188318 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0274;AVGPOST=0.9975;RSQ=0.9613;ERATE=0.0005;THETA=0.0009;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 26188338 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.614;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4253;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26188376 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6834;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26188610 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0118;AVGPOST=0.9992;RSQ=0.9706;ERATE=0.0004;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26188625 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6320;AVGPOST=0.9954;RSQ=0.9918;ERATE=0.0005;THETA=0.0007;AC=1381;AN=2184 GT:DS:GL:BD 0.63232601 1 1 26188651 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.914;LDAF=0.0097;AVGPOST=0.9974;RSQ=0.9116;ERATE=0.0004;THETA=0.0015;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26188680 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0339;AVGPOST=0.9997;RSQ=0.9963;ERATE=0.0003;THETA=0.0013;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 26188739 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6577;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26188862 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0380;AVGPOST=0.9997;RSQ=0.9963;ERATE=0.0003;THETA=0.0008;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 26188889 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.921;LDAF=0.0073;AVGPOST=0.9997;RSQ=0.9822;ERATE=0.0003;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26189143 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26189169 . GCA G 680 PASS INDEL;BAVGPOST=0.996;BRSQ=0.735;LDAF=0.0075;AVGPOST=0.9950;RSQ=0.7443;ERATE=0.0004;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26189346 . TGAG T 68 PASS INDEL;BAVGPOST=0.999;BRSQ=0.717;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7258;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26189349 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9882;ERATE=0.0003;THETA=0.0015;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26189351 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9880;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26189353 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26189404 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9779;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26189473 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26189517 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0045;AVGPOST=0.9990;RSQ=0.9211;ERATE=0.0009;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26189562 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26189652 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0489;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 26189653 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26189723 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26189788 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0008;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26189939 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26190046 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0119;AVGPOST=1.0000;RSQ=0.9981;ERATE=0.0003;THETA=0.0010;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26190143 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26190231 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0009;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26190319 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9149;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26190451 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0293;AVGPOST=1.0000;RSQ=0.9993;ERATE=0.0003;THETA=0.0009;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 26190578 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.855;LDAF=0.0018;AVGPOST=0.9999;RSQ=0.9762;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26190680 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26190807 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0382;AVGPOST=0.9995;RSQ=0.9948;ERATE=0.0003;THETA=0.0005;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 26190830 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26190840 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0293;AVGPOST=0.9999;RSQ=0.9985;ERATE=0.0003;THETA=0.0011;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 26190920 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.9148;ERATE=0.0004;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26190973 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9282;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26190982 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26190985 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0203;AVGPOST=0.9995;RSQ=0.9909;ERATE=0.0003;THETA=0.0007;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 26191023 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0018;AVGPOST=0.9988;RSQ=0.7607;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26191187 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0242;AVGPOST=0.9986;RSQ=0.9756;ERATE=0.0006;THETA=0.0008;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 26191418 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0232;AVGPOST=0.9949;RSQ=0.9180;ERATE=0.0005;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 26191449 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0086;AVGPOST=0.9975;RSQ=0.8914;ERATE=0.0004;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26191537 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0496;AVGPOST=0.9975;RSQ=0.9812;ERATE=0.0006;THETA=0.0006;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 26191555 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0025;AVGPOST=0.9976;RSQ=0.5921;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26191595 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0366;AVGPOST=0.9962;RSQ=0.9605;ERATE=0.0004;THETA=0.0006;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 26191659 . C CAA 44062 PASS INDEL;BAVGPOST=0.923;BRSQ=0.625;LDAF=0.8659;AVGPOST=0.8737;RSQ=0.5623;ERATE=0.0363;THETA=0.0006;AC=1977;AN=2184 GT:DS:GL:BD 0.90521979 1 1 26191689 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.930;LDAF=0.0108;AVGPOST=0.9992;RSQ=0.9704;ERATE=0.0003;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26191754 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0016;AVGPOST=0.9981;RSQ=0.5781;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26191755 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7422;ERATE=0.0005;THETA=0.0034;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26191774 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0729;AVGPOST=0.9995;RSQ=0.9973;ERATE=0.0003;THETA=0.0009;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 26191815 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0294;AVGPOST=0.9996;RSQ=0.9935;ERATE=0.0004;THETA=0.0007;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 26192039 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.793;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.5886;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26192085 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.941;LDAF=0.0378;AVGPOST=0.9974;RSQ=0.9714;ERATE=0.0005;THETA=0.0007;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 26192114 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0056;AVGPOST=0.9980;RSQ=0.8595;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26192117 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.737;LDAF=0.0032;AVGPOST=0.9980;RSQ=0.7239;ERATE=0.0005;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26192276 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.5117;ERATE=0.0008;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26192384 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0384;AVGPOST=0.9991;RSQ=0.9901;ERATE=0.0005;THETA=0.0007;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 26192400 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.754;LDAF=0.0033;AVGPOST=0.9980;RSQ=0.7885;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26192409 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0053;AVGPOST=0.9984;RSQ=0.8854;ERATE=0.0004;THETA=0.0011;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26192472 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.841;LDAF=0.0208;AVGPOST=0.9912;RSQ=0.8416;ERATE=0.0014;THETA=0.0006;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 26192487 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0018;AVGPOST=0.9980;RSQ=0.5072;ERATE=0.0006;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26192889 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26192895 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26192975 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0280;AVGPOST=0.9997;RSQ=0.9948;ERATE=0.0004;THETA=0.0010;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 26193055 . CT C 302 PASS INDEL;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.5565;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26193065 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7770;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26193092 . C CT 103 PASS INDEL;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26193126 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9375;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26193218 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0380;AVGPOST=0.9999;RSQ=0.9989;ERATE=0.0003;THETA=0.0007;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 26193222 . TTTTG T 12 PASS INDEL;BAVGPOST=0.999;BRSQ=0.758;LDAF=0.0030;AVGPOST=0.9967;RSQ=0.5303;ERATE=0.0011;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26193262 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0118;AVGPOST=0.9988;RSQ=0.9594;ERATE=0.0004;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26193284 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.4441;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26193309 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8441;ERATE=0.0005;THETA=0.0031;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26193477 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.807;LDAF=0.0138;AVGPOST=0.9934;RSQ=0.7965;ERATE=0.0007;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26193510 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4837;AVGPOST=0.9929;RSQ=0.9878;ERATE=0.0004;THETA=0.0006;AC=1056;AN=2184 GT:DS:GL:BD 0.48351648 0 1 26193555 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6701;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26193641 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26193677 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26193687 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.967;LDAF=0.0264;AVGPOST=0.9989;RSQ=0.9855;ERATE=0.0003;THETA=0.0010;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 26193727 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0363;AVGPOST=0.9982;RSQ=0.9816;ERATE=0.0006;THETA=0.0023;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 26193746 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.682;LDAF=0.0053;AVGPOST=0.9946;RSQ=0.6301;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26193784 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4687;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26193785 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8702;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26193787 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0726;AVGPOST=0.9994;RSQ=0.9965;ERATE=0.0005;THETA=0.0011;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 26193867 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9094;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26193876 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0367;AVGPOST=0.9996;RSQ=0.9959;ERATE=0.0004;THETA=0.0012;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 26193877 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.6582;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26193918 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.943;LDAF=0.0157;AVGPOST=0.9974;RSQ=0.9388;ERATE=0.0005;THETA=0.0006;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 26193938 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4889;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26193940 . TTG T 85 PASS INDEL;BAVGPOST=1.000;BRSQ=0.745;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.5326;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26194233 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0051;AVGPOST=0.9990;RSQ=0.9353;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26194278 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7109;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26194296 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6944;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26194359 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26194471 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0383;AVGPOST=0.9989;RSQ=0.9883;ERATE=0.0005;THETA=0.0009;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 26194495 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26194598 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26194639 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7621;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26194793 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6043;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26194839 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0051;AVGPOST=0.9988;RSQ=0.9113;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26194857 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.911;LDAF=0.0059;AVGPOST=0.9986;RSQ=0.9120;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26194975 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4978;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26195055 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6258;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26195117 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.715;LDAF=0.0086;AVGPOST=0.9937;RSQ=0.7101;ERATE=0.0013;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26195174 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0199;AVGPOST=0.9985;RSQ=0.9673;ERATE=0.0008;THETA=0.0007;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 26195242 . AAAG A 289 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9054;ERATE=0.0004;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26195307 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1023;AVGPOST=0.9984;RSQ=0.9940;ERATE=0.0004;THETA=0.0003;AC=223;AN=2184 GT:DS:GL:BD 0.10210623 0 1 26195338 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.4224;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26195391 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0088;AVGPOST=0.9966;RSQ=0.8371;ERATE=0.0008;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26195523 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.781;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4466;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26195653 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7063;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26195719 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0110;AVGPOST=0.9985;RSQ=0.9497;ERATE=0.0003;THETA=0.0041;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26195785 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0023;AVGPOST=0.9978;RSQ=0.6080;ERATE=0.0006;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26195919 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.612;LDAF=0.0030;AVGPOST=0.9968;RSQ=0.5305;ERATE=0.0008;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26196038 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0208;AVGPOST=0.9992;RSQ=0.9822;ERATE=0.0003;THETA=0.0005;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 26196252 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0075;AVGPOST=0.9997;RSQ=0.9798;ERATE=0.0003;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26196379 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0038;AVGPOST=0.9994;RSQ=0.9430;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26196471 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6738;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26196537 . A AC 12 PASS INDEL;BAVGPOST=0.999;BRSQ=0.645;LDAF=0.0020;AVGPOST=0.9975;RSQ=0.5245;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26196784 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.762;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.3828;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26196818 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0125;AVGPOST=0.9997;RSQ=0.9877;ERATE=0.0003;THETA=0.0009;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26196853 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0262;AVGPOST=0.9981;RSQ=0.9685;ERATE=0.0005;THETA=0.0007;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 26196875 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0120;AVGPOST=0.9996;RSQ=0.9853;ERATE=0.0005;THETA=0.0008;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26196966 . ACT A 902 PASS INDEL;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0063;AVGPOST=0.9977;RSQ=0.8433;ERATE=0.0005;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26197063 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6347;AVGPOST=0.9968;RSQ=0.9938;ERATE=0.0003;THETA=0.0005;AC=1387;AN=2184 GT:DS:GL:BD 0.63507324 1 1 26197237 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26197239 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26197246 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0120;AVGPOST=0.9999;RSQ=0.9944;ERATE=0.0004;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26197450 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7029;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26197637 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.879;LDAF=0.0125;AVGPOST=0.9962;RSQ=0.8735;ERATE=0.0008;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26197793 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0500;AVGPOST=0.9996;RSQ=0.9966;ERATE=0.0004;THETA=0.0007;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 26197842 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0513;AVGPOST=0.9999;RSQ=0.9988;ERATE=0.0003;THETA=0.0009;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 26197871 . T TGA 625 PASS INDEL;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0042;AVGPOST=0.9981;RSQ=0.7928;ERATE=0.0008;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26197946 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26197994 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0029;AVGPOST=0.9989;RSQ=0.8436;ERATE=0.0008;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26198051 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26198104 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6607;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26198173 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0215;AVGPOST=0.9974;RSQ=0.9620;ERATE=0.0003;THETA=0.0007;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 26198270 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0294;AVGPOST=0.9995;RSQ=0.9929;ERATE=0.0003;THETA=0.0007;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 26198286 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26198446 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8459;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26198499 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.912;LDAF=0.0169;AVGPOST=0.9977;RSQ=0.9468;ERATE=0.0003;THETA=0.0010;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 26198518 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0024;AVGPOST=0.9987;RSQ=0.7658;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26198649 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0390;AVGPOST=0.9985;RSQ=0.9845;ERATE=0.0003;THETA=0.0005;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 26198678 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9997;RSQ=0.9770;ERATE=0.0003;THETA=0.0011;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26198682 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=0.9991;RSQ=0.9373;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26198722 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8624;ERATE=0.0005;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26198798 . CCT C 287 PASS INDEL;BAVGPOST=0.997;BRSQ=0.730;LDAF=0.0047;AVGPOST=0.9967;RSQ=0.7328;ERATE=0.0004;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26198909 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26198913 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.745;LDAF=0.0073;AVGPOST=0.9972;RSQ=0.8519;ERATE=0.0004;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26199037 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.676;LDAF=0.0017;AVGPOST=0.9978;RSQ=0.4837;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26199051 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0386;AVGPOST=0.9988;RSQ=0.9863;ERATE=0.0005;THETA=0.0008;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 26199065 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.783;LDAF=0.0018;AVGPOST=0.9978;RSQ=0.4532;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26199146 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7718;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26199149 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0510;AVGPOST=0.9994;RSQ=0.9946;ERATE=0.0004;THETA=0.0005;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 26199153 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5703;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26199334 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.897;LDAF=0.0072;AVGPOST=0.9991;RSQ=0.9542;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26199392 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9384;ERATE=0.0005;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26199519 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.773;LDAF=0.0033;AVGPOST=0.9981;RSQ=0.7667;ERATE=0.0007;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26199541 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7442;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26199705 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7092;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26200026 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4936;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26200049 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7748;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26200115 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1026;AVGPOST=0.9951;RSQ=0.9831;ERATE=0.0004;THETA=0.0003;AC=221;AN=2184 GT:DS:GL:BD 0.10119048 0 1 26200156 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.6805;ERATE=0.0006;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26200408 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7531;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26200443 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5595;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26200467 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0069;AVGPOST=0.9987;RSQ=0.9166;ERATE=0.0004;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26200602 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.974;LDAF=0.5822;AVGPOST=0.9910;RSQ=0.9823;ERATE=0.0010;THETA=0.0007;AC=1277;AN=2184 GT:DS:GL:BD 0.58470696 1 1 26200717 rs34640535 GC G 2904 PASS INDEL;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0263;AVGPOST=0.9986;RSQ=0.9818;ERATE=0.0004;THETA=0.0004;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 26200833 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0127;AVGPOST=0.9985;RSQ=0.9574;ERATE=0.0005;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26200986 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5995;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26201024 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0108;AVGPOST=0.9991;RSQ=0.9732;ERATE=0.0004;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26201035 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5938;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26201100 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0122;AVGPOST=0.9995;RSQ=0.9782;ERATE=0.0005;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26201164 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.5489;AVGPOST=0.9955;RSQ=0.9921;ERATE=0.0005;THETA=0.0010;AC=1197;AN=2184 GT:DS:GL:BD 0.54807693 1 1 26201182 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26201205 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7582;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26201206 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.680;LDAF=0.0021;AVGPOST=0.9973;RSQ=0.4908;ERATE=0.0007;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26201462 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0120;AVGPOST=0.9998;RSQ=0.9926;ERATE=0.0004;THETA=0.0041;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26201514 . TC T 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.712;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5922;ERATE=0.0004;THETA=0.0041;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26201552 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0123;AVGPOST=0.9992;RSQ=0.9674;ERATE=0.0005;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26201623 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0005;AVGPOST=0.9990;RSQ=0.2910;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26201690 . GT G 743 PASS INDEL;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0120;AVGPOST=0.9967;RSQ=0.8696;ERATE=0.0006;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26201710 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.356;LDAF=0.0355;AVGPOST=0.9448;RSQ=0.3724;ERATE=0.0107;THETA=0.0007;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 26201888 . CCAGCCCCG C 59 PASS INDEL;BAVGPOST=0.987;BRSQ=0.125;LDAF=0.0179;AVGPOST=0.9688;RSQ=0.3252;ERATE=0.0020;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26201889 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.976;LDAF=0.0501;AVGPOST=0.9964;RSQ=0.9720;ERATE=0.0006;THETA=0.0007;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 26202358 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.876;LDAF=0.0119;AVGPOST=0.9911;RSQ=0.7003;ERATE=0.0012;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26202396 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0173;AVGPOST=0.9828;RSQ=0.6262;ERATE=0.0011;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26202426 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.815;BRSQ=0.627;LDAF=0.3121;AVGPOST=0.8598;RSQ=0.7628;ERATE=0.0086;THETA=0.0033;AC=653;AN=2184 GT:DS:GL:BD 0.29899266 0 1 26202437 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.850;LDAF=0.0286;AVGPOST=0.9904;RSQ=0.8631;ERATE=0.0014;THETA=0.0004;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 26202677 . TG T 14 PASS INDEL;BAVGPOST=0.999;BRSQ=0.674;LDAF=0.0024;AVGPOST=0.9981;RSQ=0.6899;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26202724 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.4955;AVGPOST=0.9915;RSQ=0.9873;ERATE=0.0022;THETA=0.0058;AC=1081;AN=2184 GT:DS:GL:BD 0.49496338 0 1 26202861 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.624;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26202959 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.611;LDAF=0.0113;AVGPOST=0.9934;RSQ=0.7453;ERATE=0.0012;THETA=0.0015;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26203097 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.986;LDAF=0.5256;AVGPOST=0.9881;RSQ=0.9839;ERATE=0.0014;THETA=0.0008;AC=1148;AN=2184 GT:DS:GL:BD 0.52564102 1 1 26203197 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.746;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5951;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26203316 . C CA 5294 PASS INDEL;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0335;AVGPOST=0.9970;RSQ=0.9637;ERATE=0.0004;THETA=0.0010;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 26203328 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26203344 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0083;AVGPOST=0.9998;RSQ=0.9905;ERATE=0.0003;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26203355 . GA G 3221 PASS INDEL;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0254;AVGPOST=0.9983;RSQ=0.9739;ERATE=0.0004;THETA=0.0007;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 26203418 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.911;LDAF=0.0241;AVGPOST=0.9978;RSQ=0.9647;ERATE=0.0004;THETA=0.0022;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 26203457 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.797;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6586;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26203546 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6644;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26203549 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6307;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26203649 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8637;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26203724 . TTTG T 73 PASS INDEL;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26203733 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0414;AVGPOST=0.9992;RSQ=0.9922;ERATE=0.0005;THETA=0.0003;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 26203734 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6495;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26204063 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0142;AVGPOST=0.9990;RSQ=0.9731;ERATE=0.0003;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 26204285 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0024;AVGPOST=0.9976;RSQ=0.6867;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26204351 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0067;AVGPOST=0.9976;RSQ=0.8580;ERATE=0.0004;THETA=0.0010;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26204372 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.478;LDAF=0.0027;AVGPOST=0.9954;RSQ=0.3464;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26204416 . C CA 559 PASS INDEL;BAVGPOST=0.958;BRSQ=0.553;LDAF=0.0815;AVGPOST=0.9037;RSQ=0.4628;ERATE=0.0306;THETA=0.0006;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 26204480 . T TA 59 PASS INDEL;BAVGPOST=0.999;BRSQ=0.809;LDAF=0.0032;AVGPOST=0.9965;RSQ=0.5414;ERATE=0.0006;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26204489 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26204498 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.7340;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26204636 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0021;AVGPOST=0.9979;RSQ=0.5623;ERATE=0.0006;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26204644 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0046;AVGPOST=0.9934;RSQ=0.4611;ERATE=0.0007;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26204689 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.532;LDAF=0.0048;AVGPOST=0.9927;RSQ=0.3980;ERATE=0.0009;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26204733 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0079;AVGPOST=0.9942;RSQ=0.6733;ERATE=0.0007;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26204876 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.749;BRSQ=0.394;LDAF=0.2975;AVGPOST=0.7413;RSQ=0.4836;ERATE=0.0232;THETA=0.0007;AC=476;AN=2184 GT:DS:GL:BD 0.21794872 0 1 26204877 . AT A 61 PASS INDEL;BAVGPOST=0.800;BRSQ=0.124;LDAF=0.1965;AVGPOST=0.7410;RSQ=0.3316;ERATE=0.0151;THETA=0.0007;AC=234;AN=2184 GT:DS:GL:BD 0.10714286 0 1 26204894 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.627;BRSQ=0.327;LDAF=0.4024;AVGPOST=0.6839;RSQ=0.4709;ERATE=0.0258;THETA=0.0004;AC=839;AN=2184 GT:DS:GL:BD 0.38415751 0 1 26205000 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0075;AVGPOST=0.9984;RSQ=0.8983;ERATE=0.0007;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26205047 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.604;LDAF=0.0083;AVGPOST=0.9913;RSQ=0.5949;ERATE=0.0005;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26205208 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.6433;AVGPOST=0.9803;RSQ=0.9670;ERATE=0.0021;THETA=0.0009;AC=1411;AN=2184 GT:DS:GL:BD 0.64606225 1 1 26205460 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0035;AVGPOST=0.9992;RSQ=0.9252;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26205587 . GAC G 188 PASS INDEL;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5378;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26205706 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6683;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26205970 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26205978 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26206193 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26206202 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7673;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26206223 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7560;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26206358 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26206482 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.786;LDAF=0.0059;AVGPOST=0.9981;RSQ=0.8597;ERATE=0.0005;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26206497 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7199;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26206794 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0162;AVGPOST=0.9978;RSQ=0.9502;ERATE=0.0003;THETA=0.0008;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 26206808 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26206975 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0137;AVGPOST=0.9991;RSQ=0.9692;ERATE=0.0004;THETA=0.0006;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26206982 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26207095 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26207162 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9294;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26207208 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7885;ERATE=0.0007;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26207217 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26207241 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.660;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6564;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26207244 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6488;AVGPOST=0.9989;RSQ=0.9979;ERATE=0.0004;THETA=0.0009;AC=1418;AN=2184 GT:DS:GL:BD 0.64926738 1 1 26207276 . C CATAA 1018 PASS INDEL;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9691;ERATE=0.0004;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26207343 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.809;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26207656 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0086;AVGPOST=0.9992;RSQ=0.9594;ERATE=0.0006;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26207735 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0090;AVGPOST=0.9991;RSQ=0.9633;ERATE=0.0004;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26208066 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0535;AVGPOST=0.9990;RSQ=0.9927;ERATE=0.0004;THETA=0.0005;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 26208117 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7153;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26208132 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0082;AVGPOST=0.9978;RSQ=0.8947;ERATE=0.0005;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26208135 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.756;LDAF=0.0074;AVGPOST=0.9983;RSQ=0.9099;ERATE=0.0004;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26208296 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4656;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26208318 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.694;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.4339;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26208361 . AC A 181 PASS INDEL;BAVGPOST=0.997;BRSQ=0.642;LDAF=0.0127;AVGPOST=0.9852;RSQ=0.5987;ERATE=0.0006;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26208367 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0108;AVGPOST=0.9993;RSQ=0.9693;ERATE=0.0004;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26208378 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.982;LDAF=0.5853;AVGPOST=0.9936;RSQ=0.9892;ERATE=0.0007;THETA=0.0008;AC=1284;AN=2184 GT:DS:GL:BD 0.58791208 1 1 26208422 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7496;ERATE=0.0003;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26208463 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.553;LDAF=0.0008;AVGPOST=0.9989;RSQ=0.3760;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26208545 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0023;AVGPOST=0.9973;RSQ=0.5568;ERATE=0.0007;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26208657 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5963;AVGPOST=0.9976;RSQ=0.9956;ERATE=0.0006;THETA=0.0004;AC=1303;AN=2184 GT:DS:GL:BD 0.59661174 1 1 26208744 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0142;AVGPOST=0.9996;RSQ=0.9866;ERATE=0.0003;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 26208801 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0035;AVGPOST=0.9982;RSQ=0.7943;ERATE=0.0007;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26208945 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9804;ERATE=0.0004;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26208951 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26209023 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.5012;AVGPOST=0.9979;RSQ=0.9965;ERATE=0.0005;THETA=0.0004;AC=1095;AN=2184 GT:DS:GL:BD 0.50137365 1 1 26209024 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3989;ERATE=0.0007;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26209082 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4595;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26209281 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.812;LDAF=0.0044;AVGPOST=0.9970;RSQ=0.7421;ERATE=0.0005;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26209369 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0115;AVGPOST=0.9995;RSQ=0.9833;ERATE=0.0004;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26209502 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0021;AVGPOST=0.9968;RSQ=0.3887;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26209525 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0546;AVGPOST=0.9986;RSQ=0.9919;ERATE=0.0004;THETA=0.0009;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 26209677 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.924;BRSQ=0.860;LDAF=0.5398;AVGPOST=0.9053;RSQ=0.8554;ERATE=0.0152;THETA=0.0004;AC=1208;AN=2184 GT:DS:GL:BD 0.55311358 1 1 26209685 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.931;BRSQ=0.885;LDAF=0.4407;AVGPOST=0.9565;RSQ=0.9405;ERATE=0.0025;THETA=0.0005;AC=972;AN=2184 GT:DS:GL:BD 0.44505495 0 1 26209783 . CAGG C 799 PASS INDEL;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0084;AVGPOST=0.9979;RSQ=0.8806;ERATE=0.0008;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26209826 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0086;AVGPOST=0.9979;RSQ=0.8964;ERATE=0.0005;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26209860 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.646;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7715;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26209864 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0162;AVGPOST=0.9972;RSQ=0.9378;ERATE=0.0004;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 26209905 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0075;AVGPOST=0.9996;RSQ=0.9736;ERATE=0.0004;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26209966 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0012;AVGPOST=0.9979;RSQ=0.2758;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26209970 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6552;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26210164 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5961;AVGPOST=0.9965;RSQ=0.9938;ERATE=0.0007;THETA=0.0005;AC=1303;AN=2184 GT:DS:GL:BD 0.59661174 1 1 26210280 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26210392 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0029;AVGPOST=0.9970;RSQ=0.6384;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26210397 . GAC G 99 PASS INDEL;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6490;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26210750 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0048;AVGPOST=0.9994;RSQ=0.9413;ERATE=0.0005;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26210791 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5964;AVGPOST=0.9941;RSQ=0.9898;ERATE=0.0008;THETA=0.0004;AC=1304;AN=2184 GT:DS:GL:BD 0.59706962 1 1 26210983 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.722;LDAF=0.0084;AVGPOST=0.9968;RSQ=0.8575;ERATE=0.0003;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26211015 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4112;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26211043 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.690;LDAF=0.0055;AVGPOST=0.9952;RSQ=0.6419;ERATE=0.0012;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26211079 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.799;LDAF=0.0093;AVGPOST=0.9957;RSQ=0.8272;ERATE=0.0005;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26211207 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.943;LDAF=0.4668;AVGPOST=0.9574;RSQ=0.9317;ERATE=0.0225;THETA=0.0006;AC=1023;AN=2184 GT:DS:GL:BD 0.46840659 0 1 26211207 . A AG 15179 PASS INDEL;BAVGPOST=0.962;BRSQ=0.930;LDAF=0.5032;AVGPOST=0.9833;RSQ=0.9740;ERATE=0.0013;THETA=0.0009;AC=1103;AN=2184 GT:DS:GL:BD 0.50503665 1 1 26211392 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0103;AVGPOST=0.9996;RSQ=0.9874;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26211400 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7773;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26211475 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0532;AVGPOST=0.9996;RSQ=0.9968;ERATE=0.0003;THETA=0.0004;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 26211588 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=0.9990;RSQ=0.9647;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26211619 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9921;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26211660 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7163;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26211773 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5007;AVGPOST=0.9989;RSQ=0.9984;ERATE=0.0004;THETA=0.0003;AC=1093;AN=2184 GT:DS:GL:BD 0.50045788 1 1 26211887 . TGCCAC T 1097 PASS INDEL;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.6561;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26211974 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26212145 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.6709;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26212219 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26212220 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26212261 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0327;AVGPOST=0.9988;RSQ=0.9882;ERATE=0.0003;THETA=0.0010;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 26212388 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26212421 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9940;ERATE=0.0003;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26212431 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.985;LDAF=0.0294;AVGPOST=0.9995;RSQ=0.9920;ERATE=0.0004;THETA=0.0005;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 26212478 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26212577 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5717;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26212585 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6411;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26212594 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0142;AVGPOST=0.9999;RSQ=0.9953;ERATE=0.0003;THETA=0.0011;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 26212805 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8541;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26213012 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5009;AVGPOST=0.9975;RSQ=0.9963;ERATE=0.0006;THETA=0.0004;AC=1094;AN=2184 GT:DS:GL:BD 0.50091577 1 1 26213070 rs71906033 C CT 2181 PASS INDEL;BAVGPOST=0.606;BRSQ=0.263;LDAF=0.5041;AVGPOST=0.6379;RSQ=0.3367;ERATE=0.0456;THETA=0.0001;AC=1066;AN=2184 GT:DS:GL:BD 0.48809522 0 1 26213071 . T TG 196 PASS INDEL;BAVGPOST=0.988;BRSQ=0.494;LDAF=0.0147;AVGPOST=0.9826;RSQ=0.5279;ERATE=0.0036;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26213156 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0085;AVGPOST=0.9985;RSQ=0.9229;ERATE=0.0005;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26213165 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0036;AVGPOST=0.9957;RSQ=0.4998;ERATE=0.0007;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26213191 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.838;LDAF=0.0244;AVGPOST=0.9953;RSQ=0.9208;ERATE=0.0005;THETA=0.0004;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 26213226 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4723;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26213228 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9940;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26213286 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5968;AVGPOST=0.9973;RSQ=0.9954;ERATE=0.0007;THETA=0.0006;AC=1304;AN=2184 GT:DS:GL:BD 0.59706962 1 1 26213342 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.887;LDAF=0.0128;AVGPOST=0.9986;RSQ=0.9500;ERATE=0.0005;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26213464 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5914;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26213550 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7825;AVGPOST=0.9966;RSQ=0.9926;ERATE=0.0004;THETA=0.0003;AC=1711;AN=2184 GT:DS:GL:BD 0.78342491 1 1 26213724 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0126;AVGPOST=0.9994;RSQ=0.9773;ERATE=0.0006;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26213880 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0539;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 26213903 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26213940 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26213991 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5000;AVGPOST=0.9998;RSQ=0.9997;ERATE=0.0003;THETA=0.0022;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 26214010 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0017;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26214015 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26214139 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0335;AVGPOST=0.9993;RSQ=0.9916;ERATE=0.0003;THETA=0.0005;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 26214167 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.7246;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26214174 . T TTTTTG 1075 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0057;AVGPOST=0.9977;RSQ=0.8357;ERATE=0.0005;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26214287 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.3860;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26214305 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.5185;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26214455 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.562;LDAF=0.0037;AVGPOST=0.9975;RSQ=0.7321;ERATE=0.0006;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26214476 . CTTG C 142 PASS INDEL;BAVGPOST=0.991;BRSQ=0.572;LDAF=0.0245;AVGPOST=0.9650;RSQ=0.3762;ERATE=0.0077;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26214526 . A AG 21 PASS INDEL;BAVGPOST=0.999;BRSQ=0.677;LDAF=0.0023;AVGPOST=0.9978;RSQ=0.5581;ERATE=0.0008;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26214603 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0265;AVGPOST=0.9989;RSQ=0.9834;ERATE=0.0004;THETA=0.0002;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 26214831 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0057;AVGPOST=0.9996;RSQ=0.9690;ERATE=0.0004;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26214868 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0092;AVGPOST=0.9998;RSQ=0.9904;ERATE=0.0003;THETA=0.0021;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26215092 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9643;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26215112 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0113;AVGPOST=0.9997;RSQ=0.9904;ERATE=0.0003;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26215113 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0110;AVGPOST=0.9991;RSQ=0.9704;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26215164 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7764;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26215226 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9709;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26215260 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5745;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26215311 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26215316 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5104;AVGPOST=0.9987;RSQ=0.9980;ERATE=0.0003;THETA=0.0003;AC=1115;AN=2184 GT:DS:GL:BD 0.51053113 1 1 26215403 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9763;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26215408 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0082;AVGPOST=1.0000;RSQ=0.9976;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26215451 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8917;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26215534 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26215747 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9052;ERATE=0.0018;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26215905 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26215944 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7835;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26216081 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0302;AVGPOST=0.9999;RSQ=0.9987;ERATE=0.0003;THETA=0.0007;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 26216101 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.484;LDAF=0.0028;AVGPOST=0.9963;RSQ=0.4436;ERATE=0.0009;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26216184 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26216328 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0318;AVGPOST=0.9984;RSQ=0.9840;ERATE=0.0003;THETA=0.0003;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 26216513 . TC T 111 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5835;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26216564 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26216611 . TG T 59 PASS INDEL;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26216613 rs111486667 T TATTC 15141 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0534;AVGPOST=0.9985;RSQ=0.9881;ERATE=0.0005;THETA=0.0005;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 26216714 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26216719 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6322;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26216840 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.671;LDAF=0.0017;AVGPOST=0.9982;RSQ=0.5980;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26217015 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0048;AVGPOST=0.9996;RSQ=0.9646;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26217082 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4411;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26217091 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9503;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26217127 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.728;LDAF=0.0036;AVGPOST=0.9950;RSQ=0.4479;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26217197 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0083;AVGPOST=0.9999;RSQ=0.9952;ERATE=0.0003;THETA=0.0011;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26217249 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.897;LDAF=0.0082;AVGPOST=0.9972;RSQ=0.8677;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26217268 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7621;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26217346 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0083;AVGPOST=0.9997;RSQ=0.9836;ERATE=0.0003;THETA=0.0010;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26217614 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0027;AVGPOST=0.9967;RSQ=0.4505;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26217846 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5817;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26217987 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4194;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26218084 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5937;AVGPOST=0.9973;RSQ=0.9951;ERATE=0.0005;THETA=0.0007;AC=1297;AN=2184 GT:DS:GL:BD 0.59386444 1 1 26218132 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26218230 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.763;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6692;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26218265 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.848;LDAF=0.0199;AVGPOST=0.9932;RSQ=0.8533;ERATE=0.0006;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 26218289 . A AC 36 PASS INDEL;BAVGPOST=0.996;BRSQ=0.519;LDAF=0.0030;AVGPOST=0.9965;RSQ=0.5041;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26218292 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5165;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26218368 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.611;LDAF=0.0024;AVGPOST=0.9967;RSQ=0.4789;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26218785 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.687;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.3632;ERATE=0.0007;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26218828 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.986;LDAF=0.5917;AVGPOST=0.9848;RSQ=0.9728;ERATE=0.0026;THETA=0.0004;AC=1298;AN=2184 GT:DS:GL:BD 0.59432232 1 1 26219046 . GGCTGAGCC G 5240 PASS INDEL;BAVGPOST=0.992;BRSQ=0.923;LDAF=0.0445;AVGPOST=0.9921;RSQ=0.9311;ERATE=0.0009;THETA=0.0006;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 26219062 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.818;LDAF=0.0213;AVGPOST=0.9904;RSQ=0.8135;ERATE=0.0010;THETA=0.0009;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 26219102 . AT A 81 PASS INDEL;BAVGPOST=0.999;BRSQ=0.592;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.3229;ERATE=0.0006;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26219171 . C CCG 2319 PASS INDEL;BAVGPOST=0.992;BRSQ=0.838;LDAF=0.0227;AVGPOST=0.9946;RSQ=0.9070;ERATE=0.0004;THETA=0.0004;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 26219287 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.955;LDAF=0.0225;AVGPOST=0.9970;RSQ=0.9483;ERATE=0.0004;THETA=0.0007;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 26219289 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26219430 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.815;LDAF=0.0063;AVGPOST=0.9979;RSQ=0.8643;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26219567 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.760;LDAF=0.0147;AVGPOST=0.9915;RSQ=0.7720;ERATE=0.0005;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26219602 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.5926;AVGPOST=0.9959;RSQ=0.9924;ERATE=0.0008;THETA=0.0008;AC=1295;AN=2184 GT:DS:GL:BD 0.59294873 1 1 26219639 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.5574;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26219720 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0023;AVGPOST=0.9963;RSQ=0.4505;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26219754 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5249;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26219813 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0032;AVGPOST=0.9966;RSQ=0.6427;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26219848 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5933;AVGPOST=0.9969;RSQ=0.9949;ERATE=0.0005;THETA=0.0005;AC=1298;AN=2184 GT:DS:GL:BD 0.59432232 1 1 26220100 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.808;LDAF=0.0097;AVGPOST=0.9960;RSQ=0.8461;ERATE=0.0004;THETA=0.0017;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26220110 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.660;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5826;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26220118 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0528;AVGPOST=0.9984;RSQ=0.9896;ERATE=0.0003;THETA=0.0005;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 26220189 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0126;AVGPOST=0.9995;RSQ=0.9787;ERATE=0.0005;THETA=0.0009;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26220220 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.587;LDAF=0.0034;AVGPOST=0.9950;RSQ=0.4476;ERATE=0.0010;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26220230 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.7328;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26220246 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5466;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26220327 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0317;AVGPOST=0.9988;RSQ=0.9861;ERATE=0.0003;THETA=0.0005;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 26220469 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26220505 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7075;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26220594 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26220628 rs112584781 T TC 60 PASS INDEL;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5489;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26220629 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9808;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26220639 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8579;ERATE=0.0005;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26220715 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26220804 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6409;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26220975 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.834;LDAF=0.0106;AVGPOST=0.9966;RSQ=0.8683;ERATE=0.0004;THETA=0.0010;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26220999 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.5919;AVGPOST=0.9904;RSQ=0.9835;ERATE=0.0008;THETA=0.0006;AC=1297;AN=2184 GT:DS:GL:BD 0.59386444 1 1 26221049 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.655;LDAF=0.0016;AVGPOST=0.9980;RSQ=0.5357;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26221152 . CA C 175 PASS INDEL;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0027;AVGPOST=0.9982;RSQ=0.7520;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26221193 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7190;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26221328 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26221472 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.0913;AVGPOST=0.9953;RSQ=0.9791;ERATE=0.0005;THETA=0.0005;AC=198;AN=2184 GT:DS:GL:BD 0.09065934 0 1 26221624 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.414;LDAF=0.0047;AVGPOST=0.9940;RSQ=0.4968;ERATE=0.0010;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26221654 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.5919;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26221678 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0003;THETA=0.0028;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26221750 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.591;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4348;ERATE=0.0007;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26221756 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0271;AVGPOST=0.9977;RSQ=0.9599;ERATE=0.0005;THETA=0.0018;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 26221832 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6733;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26221910 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4889;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26221936 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0022;AVGPOST=0.9987;RSQ=0.7416;ERATE=0.0011;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26222020 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.6540;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26222275 . TG T 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4451;ERATE=0.0005;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26222279 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8446;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26222312 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8078;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26222423 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.829;LDAF=0.0044;AVGPOST=0.9980;RSQ=0.8310;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26222516 . CAGG C 295 PASS INDEL;BAVGPOST=0.999;BRSQ=0.846;LDAF=0.0032;AVGPOST=0.9973;RSQ=0.6449;ERATE=0.0008;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26222522 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7804;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26222523 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7652;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26222620 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7301;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26222650 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26222714 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26222859 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.609;LDAF=0.0075;AVGPOST=0.9895;RSQ=0.4856;ERATE=0.0024;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26222895 rs71704779 CAGG C 1449 PASS INDEL;BAVGPOST=0.998;BRSQ=0.885;LDAF=0.0060;AVGPOST=0.9980;RSQ=0.8740;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26222977 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26222985 . CCTGT C 1502 PASS INDEL;BAVGPOST=0.997;BRSQ=0.786;LDAF=0.0078;AVGPOST=0.9956;RSQ=0.7832;ERATE=0.0008;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26223088 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26223319 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0312;AVGPOST=0.9992;RSQ=0.9892;ERATE=0.0005;THETA=0.0004;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 26223465 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8558;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26223495 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0056;AVGPOST=0.9988;RSQ=0.9116;ERATE=0.0004;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26223527 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.812;LDAF=0.0030;AVGPOST=0.9989;RSQ=0.8452;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26223528 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6111;AVGPOST=0.9931;RSQ=0.9881;ERATE=0.0007;THETA=0.0008;AC=1334;AN=2184 GT:DS:GL:BD 0.61080587 1 1 26223719 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.676;LDAF=0.0015;AVGPOST=0.9978;RSQ=0.3222;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26223815 rs67308008 AAAG A 23628 PASS INDEL;BAVGPOST=0.961;BRSQ=0.931;LDAF=0.3703;AVGPOST=0.9487;RSQ=0.9212;ERATE=0.0053;THETA=0.0003;AC=806;AN=2184 GT:DS:GL:BD 0.36904761 0 1 26223979 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8260;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26224115 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9227;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26224143 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9177;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26224162 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7520;ERATE=0.0005;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26224170 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0059;AVGPOST=0.9992;RSQ=0.9474;ERATE=0.0004;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26224197 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0111;AVGPOST=0.9986;RSQ=0.9453;ERATE=0.0005;THETA=0.0037;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26224276 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7068;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26224302 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.884;LDAF=0.0126;AVGPOST=0.9978;RSQ=0.9356;ERATE=0.0005;THETA=0.0015;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26224633 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.946;LDAF=0.3428;AVGPOST=0.9670;RSQ=0.9458;ERATE=0.0032;THETA=0.0006;AC=743;AN=2184 GT:DS:GL:BD 0.34020147 0 1 26224659 . GGGGCCTGCCTGGA G 1390 PASS INDEL;BAVGPOST=0.998;BRSQ=0.811;LDAF=0.0077;AVGPOST=0.9968;RSQ=0.8363;ERATE=0.0004;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26224687 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4360;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26224832 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0083;AVGPOST=0.9999;RSQ=0.9952;ERATE=0.0003;THETA=0.0010;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26224882 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6272;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26224916 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7372;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26225061 . A AG 9579 PASS INDEL;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0529;AVGPOST=0.9984;RSQ=0.9887;ERATE=0.0005;THETA=0.0041;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 26225158 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6200;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26225292 . TC T 44 PASS INDEL;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0025;AVGPOST=0.9988;RSQ=0.7433;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26225528 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.370;LDAF=0.0031;AVGPOST=0.9964;RSQ=0.5397;ERATE=0.0010;THETA=0.0057;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26225541 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8448;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26225709 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0084;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26225756 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6380;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26225796 . A AT 15948 PASS INDEL;BAVGPOST=0.962;BRSQ=0.928;LDAF=0.5707;AVGPOST=0.9394;RSQ=0.9056;ERATE=0.0075;THETA=0.0006;AC=1266;AN=2184 GT:DS:GL:BD 0.57967031 1 1 26225798 rs11376635 T TC 66715 PASS INDEL;BAVGPOST=0.985;BRSQ=0.971;LDAF=0.6092;AVGPOST=0.9771;RSQ=0.9653;ERATE=0.0004;THETA=0.0007;AC=1330;AN=2184 GT:DS:GL:BD 0.60897434 1 1 26225799 . C CA 9226 PASS INDEL;BAVGPOST=0.962;BRSQ=0.927;LDAF=0.5736;AVGPOST=0.9453;RSQ=0.9165;ERATE=0.0027;THETA=0.0008;AC=1266;AN=2184 GT:DS:GL:BD 0.57967031 1 1 26225801 . C CA 8508 PASS INDEL;BAVGPOST=0.957;BRSQ=0.920;LDAF=0.5704;AVGPOST=0.9271;RSQ=0.8879;ERATE=0.0138;THETA=0.0012;AC=1258;AN=2184 GT:DS:GL:BD 0.57600731 1 1 26225975 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0048;AVGPOST=0.9986;RSQ=0.8710;ERATE=0.0008;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26226073 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.800;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.7166;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26226152 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.946;LDAF=0.0129;AVGPOST=0.9979;RSQ=0.9343;ERATE=0.0004;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26226229 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6229;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26226288 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0113;AVGPOST=0.9996;RSQ=0.9846;ERATE=0.0003;THETA=0.0045;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26226348 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6141;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26226361 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26226462 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6786;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26226552 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0021;AVGPOST=0.9982;RSQ=0.6876;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26226653 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6440;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26226689 . CCCA C 79 PASS INDEL;BAVGPOST=1.000;BRSQ=0.711;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.3889;ERATE=0.0006;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26226864 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26226888 . GA G 1199 PASS INDEL;BAVGPOST=0.998;BRSQ=0.922;LDAF=0.0118;AVGPOST=0.9986;RSQ=0.9496;ERATE=0.0005;THETA=0.0008;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26227368 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0091;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0051;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26227483 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26227504 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26227633 . C CG 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.741;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4502;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26227691 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26227873 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26227952 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26227971 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9914;ERATE=0.0004;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26228024 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26228357 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5697;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26228409 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7830;AVGPOST=0.9910;RSQ=0.9790;ERATE=0.0008;THETA=0.0010;AC=1713;AN=2184 GT:DS:GL:BD 0.78434068 1 1 26228482 . CAG C 47 PASS INDEL;BAVGPOST=0.999;BRSQ=0.698;LDAF=0.0024;AVGPOST=0.9962;RSQ=0.3646;ERATE=0.0007;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26228659 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.3983;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26228714 . T TC 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26228742 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.0537;AVGPOST=0.9981;RSQ=0.9870;ERATE=0.0004;THETA=0.0008;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 26228901 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5682;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26228966 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7559;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26229273 . AGAC A 73 PASS INDEL;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6377;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26229513 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26229519 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6039;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26229548 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8134;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26229625 . ATAGT A 157 PASS INDEL;BAVGPOST=0.999;BRSQ=0.614;LDAF=0.0043;AVGPOST=0.9947;RSQ=0.4838;ERATE=0.0009;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26229760 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0530;AVGPOST=0.9997;RSQ=0.9978;ERATE=0.0003;THETA=0.0007;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 26229782 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8696;ERATE=0.0005;THETA=0.0035;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26230083 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0082;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26230436 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=0.9991;RSQ=0.9629;ERATE=0.0004;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26230525 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9746;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26230759 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.927;LDAF=0.0287;AVGPOST=0.9941;RSQ=0.9286;ERATE=0.0005;THETA=0.0008;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 26230919 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0083;AVGPOST=0.9999;RSQ=0.9931;ERATE=0.0004;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26231082 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0161;AVGPOST=0.9997;RSQ=0.9917;ERATE=0.0007;THETA=0.0007;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 26231103 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26231124 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26231176 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26231318 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26231350 . C CT 107 PASS INDEL;BAVGPOST=0.999;BRSQ=0.773;LDAF=0.0050;AVGPOST=0.9931;RSQ=0.4491;ERATE=0.0006;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26231363 rs35742348 GA G 4885 PASS INDEL;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0403;AVGPOST=0.9981;RSQ=0.9813;ERATE=0.0004;THETA=0.0007;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 26231370 . AT A 81 PASS INDEL;BAVGPOST=0.995;BRSQ=0.546;LDAF=0.0070;AVGPOST=0.9945;RSQ=0.6969;ERATE=0.0006;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26231617 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26231794 . TTA T 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0025;AVGPOST=0.9978;RSQ=0.6111;ERATE=0.0006;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26232120 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.221;LDAF=0.0830;AVGPOST=0.8629;RSQ=0.2835;ERATE=0.0146;THETA=0.0008;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 26232191 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.375;LDAF=0.0210;AVGPOST=0.9750;RSQ=0.5282;ERATE=0.0016;THETA=0.0008;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26232286 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.957;LDAF=0.0527;AVGPOST=0.9941;RSQ=0.9527;ERATE=0.0007;THETA=0.0009;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 26232356 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.955;LDAF=0.6313;AVGPOST=0.8863;RSQ=0.8063;ERATE=0.0155;THETA=0.0010;AC=1424;AN=2184 GT:DS:GL:BD 0.65201467 1 1 26232946 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.530;LDAF=0.0040;AVGPOST=0.9939;RSQ=0.3974;ERATE=0.0009;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26233036 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.502;LDAF=0.0036;AVGPOST=0.9954;RSQ=0.4223;ERATE=0.0008;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26233261 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.629;LDAF=0.0026;AVGPOST=0.9956;RSQ=0.2731;ERATE=0.0011;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26233350 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.630;LDAF=0.0008;AVGPOST=0.9985;RSQ=0.3056;ERATE=0.0005;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26233630 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.885;LDAF=0.0080;AVGPOST=0.9970;RSQ=0.8429;ERATE=0.0005;THETA=0.0013;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26233810 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26233893 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8131;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26233903 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26233906 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5423;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26234012 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6404;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26234013 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26234217 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0316;AVGPOST=0.9989;RSQ=0.9854;ERATE=0.0003;THETA=0.0005;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 26234471 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26234533 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7493;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26234543 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8333;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26234725 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0107;AVGPOST=0.9995;RSQ=0.9806;ERATE=0.0004;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26234775 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0126;AVGPOST=0.9995;RSQ=0.9792;ERATE=0.0003;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26234878 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5569;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26234983 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.6104;AVGPOST=0.9961;RSQ=0.9926;ERATE=0.0007;THETA=0.0007;AC=1336;AN=2184 GT:DS:GL:BD 0.61172163 1 1 26234984 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5489;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26235072 rs60851294 G GGAT 60880 PASS INDEL;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.6077;AVGPOST=0.9911;RSQ=0.9838;ERATE=0.0014;THETA=0.0005;AC=1332;AN=2184 GT:DS:GL:BD 0.60989010 1 1 26235135 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.960;LDAF=0.5233;AVGPOST=0.9865;RSQ=0.9797;ERATE=0.0013;THETA=0.0005;AC=1150;AN=2184 GT:DS:GL:BD 0.52655679 1 1 26235161 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0548;AVGPOST=0.9958;RSQ=0.9745;ERATE=0.0005;THETA=0.0008;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 26235250 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.748;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4537;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26235350 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0040;AVGPOST=0.9981;RSQ=0.8001;ERATE=0.0005;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26235455 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0061;AVGPOST=0.9992;RSQ=0.9425;ERATE=0.0003;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26235705 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5282;AVGPOST=0.9979;RSQ=0.9964;ERATE=0.0006;THETA=0.0007;AC=1153;AN=2184 GT:DS:GL:BD 0.52793038 1 1 26235761 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7181;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26235762 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0063;AVGPOST=0.9974;RSQ=0.8518;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26235816 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5292;AVGPOST=0.9973;RSQ=0.9956;ERATE=0.0005;THETA=0.0005;AC=1156;AN=2184 GT:DS:GL:BD 0.52930403 1 1 26235855 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.748;LDAF=0.0028;AVGPOST=0.9954;RSQ=0.3480;ERATE=0.0010;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26235916 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6114;AVGPOST=0.9983;RSQ=0.9968;ERATE=0.0006;THETA=0.0007;AC=1336;AN=2184 GT:DS:GL:BD 0.61172163 1 1 26236043 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8673;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26236142 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.696;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.5015;ERATE=0.0009;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26236195 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0550;AVGPOST=0.9957;RSQ=0.9678;ERATE=0.0012;THETA=0.0004;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 26236196 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.521;LDAF=0.0041;AVGPOST=0.9937;RSQ=0.3798;ERATE=0.0013;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26236285 . TGGCG T 98 PASS INDEL;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7395;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26236346 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.580;LDAF=0.0015;AVGPOST=0.9977;RSQ=0.3100;ERATE=0.0008;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26236377 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0039;AVGPOST=0.9968;RSQ=0.6868;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26236414 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0094;AVGPOST=0.9975;RSQ=0.9041;ERATE=0.0004;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26236415 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.651;LDAF=0.0020;AVGPOST=0.9970;RSQ=0.3871;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26236505 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8380;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26236540 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26236568 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8552;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26236604 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0047;AVGPOST=0.9985;RSQ=0.8669;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26236903 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.764;LDAF=0.0086;AVGPOST=0.9954;RSQ=0.7985;ERATE=0.0006;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26236943 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0053;AVGPOST=0.9986;RSQ=0.8887;ERATE=0.0004;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26236984 . GT G 9 PASS INDEL;BAVGPOST=0.999;BRSQ=0.647;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4791;ERATE=0.0005;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26237116 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0118;AVGPOST=0.9973;RSQ=0.8956;ERATE=0.0005;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26237161 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.717;LDAF=0.0035;AVGPOST=0.9984;RSQ=0.8077;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26237335 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.904;BRSQ=0.566;LDAF=0.8690;AVGPOST=0.8796;RSQ=0.6156;ERATE=0.0141;THETA=0.0005;AC=1963;AN=2184 GT:DS:GL:BD 0.89880955 1 1 26237456 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4466;ERATE=0.0007;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26237584 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6088;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26237609 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.633;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5142;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26237723 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6193;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26237838 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0125;AVGPOST=0.9997;RSQ=0.9875;ERATE=0.0004;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26237946 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6571;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26238058 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6112;AVGPOST=0.9969;RSQ=0.9946;ERATE=0.0010;THETA=0.0005;AC=1336;AN=2184 GT:DS:GL:BD 0.61172163 1 1 26238123 . TA T 101 PASS INDEL;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5621;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26238180 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.725;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5763;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26238204 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0049;AVGPOST=0.9994;RSQ=0.9429;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26238289 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6648;AVGPOST=0.9975;RSQ=0.9949;ERATE=0.0005;THETA=0.0002;AC=1453;AN=2184 GT:DS:GL:BD 0.66529304 1 1 26238343 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0045;AVGPOST=0.9991;RSQ=0.9100;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26238544 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0023;AVGPOST=0.9980;RSQ=0.6604;ERATE=0.0005;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26238613 rs111448897 TAAAC T 212 PASS INDEL;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0040;AVGPOST=0.9957;RSQ=0.5798;ERATE=0.0018;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26238642 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26238644 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5565;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26238753 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0120;AVGPOST=0.9990;RSQ=0.9768;ERATE=0.0003;THETA=0.0008;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26238836 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0049;AVGPOST=0.9994;RSQ=0.9505;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26238889 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9179;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26238896 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5235;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26239024 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7564;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26239082 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8294;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26239117 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5194;AVGPOST=0.9983;RSQ=0.9971;ERATE=0.0004;THETA=0.0003;AC=1134;AN=2184 GT:DS:GL:BD 0.51923078 1 1 26239236 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0307;AVGPOST=0.9997;RSQ=0.9955;ERATE=0.0003;THETA=0.0006;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 26239278 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5664;AVGPOST=0.9983;RSQ=0.9971;ERATE=0.0003;THETA=0.0058;AC=1238;AN=2184 GT:DS:GL:BD 0.56684983 1 1 26239358 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0005;AVGPOST=0.9994;RSQ=0.5060;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26239359 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0840;AVGPOST=0.9992;RSQ=0.9959;ERATE=0.0004;THETA=0.0020;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 26239515 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0059;AVGPOST=0.9991;RSQ=0.9280;ERATE=0.0004;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26239585 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0250;AVGPOST=0.9984;RSQ=0.9740;ERATE=0.0004;THETA=0.0027;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 26239750 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6049;ERATE=0.0005;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26240086 rs5773137 GAT G 5352 PASS INDEL;BAVGPOST=0.998;BRSQ=0.957;LDAF=0.0250;AVGPOST=0.9988;RSQ=0.9802;ERATE=0.0004;THETA=0.0007;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 26240103 . GTTTGTT G 638 PASS INDEL;BAVGPOST=0.998;BRSQ=0.890;LDAF=0.0135;AVGPOST=0.9878;RSQ=0.6264;ERATE=0.0017;THETA=0.0032;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26240195 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0082;AVGPOST=0.9947;RSQ=0.7504;ERATE=0.0010;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26240210 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.825;LDAF=0.0198;AVGPOST=0.9925;RSQ=0.8568;ERATE=0.0008;THETA=0.0008;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 26240256 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.718;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.3903;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26240291 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26240548 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7642;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26240856 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7587;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26240870 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5341;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26240901 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.739;LDAF=0.0031;AVGPOST=0.9987;RSQ=0.8260;ERATE=0.0004;THETA=0.0045;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26241144 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0319;AVGPOST=0.9986;RSQ=0.9828;ERATE=0.0003;THETA=0.0008;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 26241280 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0025;AVGPOST=0.9987;RSQ=0.7981;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26241303 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8873;ERATE=0.0003;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26241356 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0441;AVGPOST=0.9996;RSQ=0.9971;ERATE=0.0003;THETA=0.0086;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 26241455 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.987;LDAF=0.5110;AVGPOST=0.9877;RSQ=0.9816;ERATE=0.0005;THETA=0.0007;AC=1118;AN=2184 GT:DS:GL:BD 0.51190478 1 1 26241633 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6432;ERATE=0.0005;THETA=0.0087;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26241741 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0327;AVGPOST=0.9979;RSQ=0.9778;ERATE=0.0006;THETA=0.0012;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 26241763 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0039;AVGPOST=0.9977;RSQ=0.7838;ERATE=0.0006;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26241824 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.455;LDAF=0.0042;AVGPOST=0.9940;RSQ=0.3404;ERATE=0.0009;THETA=0.0058;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26241978 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0343;AVGPOST=0.9875;RSQ=0.8491;ERATE=0.0010;THETA=0.0044;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 26241997 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0169;AVGPOST=0.9799;RSQ=0.5450;ERATE=0.0010;THETA=0.0036;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26242039 . TA T 885 PASS INDEL;BAVGPOST=0.901;BRSQ=0.527;LDAF=0.1534;AVGPOST=0.8317;RSQ=0.4680;ERATE=0.0378;THETA=0.0035;AC=206;AN=2184 GT:DS:GL:BD 0.09432235 0 1 26242075 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0505;AVGPOST=0.9985;RSQ=0.9888;ERATE=0.0005;THETA=0.0087;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 26242078 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9669;ERATE=0.0004;THETA=0.0018;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26242130 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4956;ERATE=0.0004;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26242185 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7809;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26242282 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6082;ERATE=0.0004;THETA=0.0062;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26242406 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0670;AVGPOST=0.9992;RSQ=0.9956;ERATE=0.0004;THETA=0.0011;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 26242506 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.703;LDAF=0.0037;AVGPOST=0.9991;RSQ=0.8934;ERATE=0.0005;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26242594 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.954;LDAF=0.0336;AVGPOST=0.9968;RSQ=0.9626;ERATE=0.0006;THETA=0.0008;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 26242670 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.579;LDAF=0.0022;AVGPOST=0.9967;RSQ=0.3827;ERATE=0.0006;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26242682 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0671;AVGPOST=0.9991;RSQ=0.9948;ERATE=0.0004;THETA=0.0006;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 26242695 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0044;AVGPOST=0.9950;RSQ=0.5883;ERATE=0.0006;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26242718 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4759;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26242801 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0350;AVGPOST=0.9946;RSQ=0.9439;ERATE=0.0008;THETA=0.0012;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 26242819 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.8599;ERATE=0.0004;THETA=0.0022;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26242882 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6307;AVGPOST=0.9968;RSQ=0.9945;ERATE=0.0004;THETA=0.0006;AC=1378;AN=2184 GT:DS:GL:BD 0.63095236 1 1 26242926 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6211;ERATE=0.0003;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26243225 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26243243 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6738;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26243248 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=0.9991;RSQ=0.9254;ERATE=0.0004;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26243324 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26243448 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6979;AVGPOST=0.9984;RSQ=0.9967;ERATE=0.0004;THETA=0.0007;AC=1524;AN=2184 GT:DS:GL:BD 0.69780219 1 1 26243551 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.689;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5584;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26243745 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0060;AVGPOST=0.9978;RSQ=0.8420;ERATE=0.0005;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26243753 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.960;LDAF=0.0257;AVGPOST=0.9970;RSQ=0.9464;ERATE=0.0006;THETA=0.0010;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 26243990 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0034;AVGPOST=0.9990;RSQ=0.8644;ERATE=0.0005;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26244072 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.6933;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26244123 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0496;AVGPOST=0.9993;RSQ=0.9943;ERATE=0.0005;THETA=0.0010;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 26244208 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5764;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26244311 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0667;AVGPOST=0.9994;RSQ=0.9966;ERATE=0.0004;THETA=0.0021;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 26244336 . C CA 108 PASS INDEL;BAVGPOST=1.000;BRSQ=0.725;LDAF=0.0010;AVGPOST=0.9985;RSQ=0.2987;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26244413 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0343;AVGPOST=0.9989;RSQ=0.9891;ERATE=0.0005;THETA=0.0005;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 26244422 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26244581 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6427;ERATE=0.0003;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26244653 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26245091 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.606;LDAF=0.0029;AVGPOST=0.9977;RSQ=0.6891;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26245178 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0284;AVGPOST=0.9997;RSQ=0.9957;ERATE=0.0003;THETA=0.0007;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 26245212 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0035;AVGPOST=0.9974;RSQ=0.6815;ERATE=0.0010;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26245275 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0067;AVGPOST=0.9994;RSQ=0.9576;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26245572 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.811;LDAF=0.0275;AVGPOST=0.9947;RSQ=0.9237;ERATE=0.0005;THETA=0.0007;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 26245686 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.488;LDAF=0.0027;AVGPOST=0.9955;RSQ=0.3141;ERATE=0.0008;THETA=0.0039;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26245688 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.943;LDAF=0.0291;AVGPOST=0.9982;RSQ=0.9727;ERATE=0.0004;THETA=0.0007;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 26245825 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.591;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.3253;ERATE=0.0007;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26246119 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4698;ERATE=0.0005;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26246214 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0666;AVGPOST=0.9996;RSQ=0.9979;ERATE=0.0003;THETA=0.0014;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 26246282 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7496;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26246306 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.6150;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26246355 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26246374 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7986;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26246395 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.924;LDAF=0.0113;AVGPOST=0.9976;RSQ=0.9103;ERATE=0.0004;THETA=0.0014;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26246396 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7525;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26246583 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7407;ERATE=0.0004;THETA=0.0025;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26246603 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0668;AVGPOST=0.9997;RSQ=0.9983;ERATE=0.0003;THETA=0.0038;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 26246609 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0116;AVGPOST=0.9995;RSQ=0.9829;ERATE=0.0004;THETA=0.0007;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26246691 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6695;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26246795 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0344;AVGPOST=0.9997;RSQ=0.9966;ERATE=0.0003;THETA=0.0025;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 26246901 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26246955 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0040;AVGPOST=0.9980;RSQ=0.8131;ERATE=0.0006;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26246976 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.910;LDAF=0.0050;AVGPOST=0.9985;RSQ=0.8881;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26247013 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9512;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26247050 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26247127 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2999;AVGPOST=0.9957;RSQ=0.9915;ERATE=0.0005;THETA=0.0013;AC=654;AN=2184 GT:DS:GL:BD 0.29945055 0 1 26247269 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.742;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5604;ERATE=0.0005;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26247509 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0348;AVGPOST=0.9987;RSQ=0.9850;ERATE=0.0006;THETA=0.0009;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 26247552 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4672;ERATE=0.0005;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26247571 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.758;LDAF=0.0008;AVGPOST=0.9989;RSQ=0.4003;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26247581 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0090;AVGPOST=0.9989;RSQ=0.9581;ERATE=0.0003;THETA=0.0024;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26247602 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.973;LDAF=0.0277;AVGPOST=0.9989;RSQ=0.9817;ERATE=0.0005;THETA=0.0005;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 26247631 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0513;AVGPOST=0.9985;RSQ=0.9896;ERATE=0.0005;THETA=0.0009;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 26247739 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26247782 rs5773140 TA T 30122 PASS INDEL;BAVGPOST=0.991;BRSQ=0.987;LDAF=0.3672;AVGPOST=0.9949;RSQ=0.9921;ERATE=0.0003;THETA=0.0008;AC=800;AN=2184 GT:DS:GL:BD 0.36630037 0 1 26247785 . AC A 2178 PASS INDEL;BAVGPOST=0.917;BRSQ=0.849;LDAF=0.3221;AVGPOST=0.9350;RSQ=0.9030;ERATE=0.0024;THETA=0.0004;AC=733;AN=2184 GT:DS:GL:BD 0.33562270 0 1 26247878 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.607;LDAF=0.0039;AVGPOST=0.9963;RSQ=0.6251;ERATE=0.0005;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26247881 rs10700458 T TTTACTTAC 7254 PASS INDEL;BAVGPOST=0.991;BRSQ=0.892;LDAF=0.0448;AVGPOST=0.9813;RSQ=0.8304;ERATE=0.0038;THETA=0.0032;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 26247893 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.675;LDAF=0.0067;AVGPOST=0.9970;RSQ=0.8376;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26248042 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.978;LDAF=0.0668;AVGPOST=0.9988;RSQ=0.9923;ERATE=0.0005;THETA=0.0012;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 26248146 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.667;LDAF=0.0160;AVGPOST=0.9911;RSQ=0.7584;ERATE=0.0007;THETA=0.0009;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26248187 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0667;AVGPOST=0.9991;RSQ=0.9953;ERATE=0.0004;THETA=0.0006;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 26248290 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7702;ERATE=0.0003;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26248440 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0020;AVGPOST=0.9994;RSQ=0.8686;ERATE=0.0004;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26248451 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0667;AVGPOST=0.9990;RSQ=0.9946;ERATE=0.0003;THETA=0.0007;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 26248497 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0670;AVGPOST=0.9985;RSQ=0.9918;ERATE=0.0003;THETA=0.0008;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 26248502 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0034;AVGPOST=0.9990;RSQ=0.8791;ERATE=0.0004;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26248522 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26248609 . C CG 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5035;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26248642 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0025;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26248705 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26248782 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6404;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26248822 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0021;AVGPOST=0.9989;RSQ=0.7835;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26248852 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26249233 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0722;AVGPOST=0.9834;RSQ=0.9185;ERATE=0.0010;THETA=0.0007;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 26249270 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0677;AVGPOST=0.9960;RSQ=0.9796;ERATE=0.0007;THETA=0.0033;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 26249584 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0019;AVGPOST=0.9985;RSQ=0.6438;ERATE=0.0005;THETA=0.0019;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26249629 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.482;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.3863;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26249657 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.761;LDAF=0.0025;AVGPOST=0.9966;RSQ=0.4227;ERATE=0.0007;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26249835 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.6147;AVGPOST=0.9946;RSQ=0.9913;ERATE=0.0008;THETA=0.0006;AC=1344;AN=2184 GT:DS:GL:BD 0.61538464 1 1 26249872 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.710;LDAF=0.0021;AVGPOST=0.9967;RSQ=0.3062;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26249894 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7419;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26249912 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0091;AVGPOST=0.9997;RSQ=0.9875;ERATE=0.0003;THETA=0.0007;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26249941 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0059;AVGPOST=0.9982;RSQ=0.8873;ERATE=0.0004;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26250047 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0050;AVGPOST=0.9973;RSQ=0.7953;ERATE=0.0005;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26250059 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6327;AVGPOST=0.9978;RSQ=0.9962;ERATE=0.0005;THETA=0.0008;AC=1383;AN=2184 GT:DS:GL:BD 0.63324177 1 1 26250168 . CTA C 371 PASS INDEL;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0034;AVGPOST=0.9978;RSQ=0.7572;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26250208 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.805;LDAF=0.0180;AVGPOST=0.9901;RSQ=0.7796;ERATE=0.0027;THETA=0.0006;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 26250316 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.7246;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26250549 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.602;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.6087;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26250570 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.980;LDAF=0.0658;AVGPOST=0.9988;RSQ=0.9941;ERATE=0.0004;THETA=0.0026;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 26250599 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0093;AVGPOST=0.9995;RSQ=0.9763;ERATE=0.0004;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26250726 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0071;AVGPOST=0.9962;RSQ=0.7908;ERATE=0.0005;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26250791 . TC T 147 PASS INDEL;BAVGPOST=0.996;BRSQ=0.523;LDAF=0.0032;AVGPOST=0.9982;RSQ=0.7455;ERATE=0.0007;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26250842 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.990;LDAF=0.6332;AVGPOST=0.9966;RSQ=0.9937;ERATE=0.0006;THETA=0.0012;AC=1383;AN=2184 GT:DS:GL:BD 0.63324177 1 1 26250864 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.701;LDAF=0.0030;AVGPOST=0.9961;RSQ=0.4583;ERATE=0.0009;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26250892 . AAG A 57 PASS INDEL;BAVGPOST=0.970;BRSQ=0.537;LDAF=0.0277;AVGPOST=0.9622;RSQ=0.4535;ERATE=0.0029;THETA=0.0008;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 26250893 . AG A 380 PASS INDEL;BAVGPOST=0.950;BRSQ=0.501;LDAF=0.0993;AVGPOST=0.8783;RSQ=0.4457;ERATE=0.0218;THETA=0.0006;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 26250919 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.7382;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26251053 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0276;AVGPOST=0.9995;RSQ=0.9907;ERATE=0.0003;THETA=0.0004;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 26251094 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0654;AVGPOST=0.9996;RSQ=0.9974;ERATE=0.0003;THETA=0.0005;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 26251195 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8178;ERATE=0.0003;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26251280 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7040;ERATE=0.0007;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26251306 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.5209;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26251430 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8362;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26251564 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0010;AVGPOST=0.9985;RSQ=0.3798;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26251569 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0004;AVGPOST=0.9992;RSQ=0.2549;ERATE=0.0004;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26251571 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0085;AVGPOST=0.9989;RSQ=0.9480;ERATE=0.0005;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26251574 rs112994032 CT C 890 PASS INDEL;BAVGPOST=0.995;BRSQ=0.920;LDAF=0.0272;AVGPOST=0.9992;RSQ=0.9874;ERATE=0.0003;THETA=0.0003;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 26251578 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.851;LDAF=0.0209;AVGPOST=0.9866;RSQ=0.7633;ERATE=0.0019;THETA=0.0009;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 26251643 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.557;LDAF=0.0149;AVGPOST=0.9950;RSQ=0.8624;ERATE=0.0005;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 26251645 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.771;LDAF=0.0269;AVGPOST=0.9953;RSQ=0.9310;ERATE=0.0005;THETA=0.0004;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 26251796 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.663;LDAF=0.0047;AVGPOST=0.9942;RSQ=0.4632;ERATE=0.0009;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26251804 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.982;LDAF=0.6936;AVGPOST=0.9897;RSQ=0.9791;ERATE=0.0008;THETA=0.0005;AC=1522;AN=2184 GT:DS:GL:BD 0.69688642 1 1 26251865 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.944;LDAF=0.0297;AVGPOST=0.9970;RSQ=0.9640;ERATE=0.0005;THETA=0.0012;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 26251935 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.553;LDAF=0.0168;AVGPOST=0.9796;RSQ=0.5038;ERATE=0.0041;THETA=0.0013;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26251936 . AT A 60 PASS INDEL;BAVGPOST=0.997;BRSQ=0.409;LDAF=0.0086;AVGPOST=0.9895;RSQ=0.4864;ERATE=0.0017;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26252034 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0275;AVGPOST=0.9997;RSQ=0.9945;ERATE=0.0004;THETA=0.0022;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 26252172 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.7115;AVGPOST=0.9947;RSQ=0.9893;ERATE=0.0008;THETA=0.0009;AC=1556;AN=2184 GT:DS:GL:BD 0.71245420 1 1 26252185 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.799;LDAF=0.0032;AVGPOST=0.9975;RSQ=0.6556;ERATE=0.0006;THETA=0.0050;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26252446 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5809;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26252610 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.5085;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26252741 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6195;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26252860 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0105;AVGPOST=0.9982;RSQ=0.9245;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26253160 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7645;ERATE=0.0003;THETA=0.0018;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26253266 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0114;AVGPOST=0.9983;RSQ=0.9546;ERATE=0.0004;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26253355 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.6288;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26253367 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5835;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26253468 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.7656;ERATE=0.0004;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26253553 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0580;AVGPOST=0.9982;RSQ=0.9880;ERATE=0.0005;THETA=0.0008;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 26253782 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26253858 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26253943 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26254114 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0040;AVGPOST=0.9975;RSQ=0.7712;ERATE=0.0004;THETA=0.0012;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26254318 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.6577;ERATE=0.0007;THETA=0.0040;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26254356 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7368;ERATE=0.0005;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26254365 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.686;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7629;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26254392 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8699;ERATE=0.0003;THETA=0.0029;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26254563 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6707;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26254758 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4676;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26254979 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8063;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26255079 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26255145 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.718;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26255147 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0283;AVGPOST=0.9998;RSQ=0.9962;ERATE=0.0003;THETA=0.0021;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 26255154 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7193;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26255201 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0024;AVGPOST=0.9994;RSQ=0.8896;ERATE=0.0003;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26255204 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.850;LDAF=0.0061;AVGPOST=0.9979;RSQ=0.8662;ERATE=0.0005;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26255215 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3081;AVGPOST=0.9963;RSQ=0.9932;ERATE=0.0004;THETA=0.0012;AC=671;AN=2184 GT:DS:GL:BD 0.30723444 0 1 26255331 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9732;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26255458 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26255591 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9221;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26255662 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0076;AVGPOST=0.9990;RSQ=0.9514;ERATE=0.0004;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26255682 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8911;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26255731 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2909;AVGPOST=0.9985;RSQ=0.9969;ERATE=0.0004;THETA=0.0009;AC=634;AN=2184 GT:DS:GL:BD 0.29029304 0 1 26255838 . G GC 18 PASS INDEL;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8681;ERATE=0.0004;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26255846 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5258;ERATE=0.0004;THETA=0.0039;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26255921 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.500;LDAF=0.0016;AVGPOST=0.9980;RSQ=0.5340;ERATE=0.0006;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26256012 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.750;LDAF=0.0029;AVGPOST=0.9975;RSQ=0.7091;ERATE=0.0004;THETA=0.0023;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26256100 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0025;AVGPOST=0.9984;RSQ=0.7294;ERATE=0.0005;THETA=0.0017;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26256122 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5545;ERATE=0.0005;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26256140 . A AAAC 1900 PASS INDEL;BAVGPOST=0.930;BRSQ=0.729;LDAF=0.1657;AVGPOST=0.9103;RSQ=0.7424;ERATE=0.0246;THETA=0.0010;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 26256174 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2223;AVGPOST=0.9958;RSQ=0.9907;ERATE=0.0004;THETA=0.0010;AC=485;AN=2184 GT:DS:GL:BD 0.22206959 0 1 26256213 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0045;AVGPOST=0.9993;RSQ=0.9248;ERATE=0.0010;THETA=0.0062;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26256239 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0021;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26256292 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8345;ERATE=0.0003;THETA=0.0110;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26256293 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26256329 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26256382 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6846;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26256398 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0284;AVGPOST=0.9996;RSQ=0.9939;ERATE=0.0003;THETA=0.0048;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 26256515 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8717;ERATE=0.0004;THETA=0.0085;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26256549 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7941;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26256575 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0265;AVGPOST=0.9976;RSQ=0.9644;ERATE=0.0005;THETA=0.0117;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 26256770 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4019;ERATE=0.0003;THETA=0.0074;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26256773 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0082;AVGPOST=0.9992;RSQ=0.9597;ERATE=0.0003;THETA=0.0009;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26256837 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8313;ERATE=0.0003;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26256937 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0281;AVGPOST=0.9990;RSQ=0.9880;ERATE=0.0003;THETA=0.0009;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 26256971 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5775;ERATE=0.0004;THETA=0.0055;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26257371 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.844;LDAF=0.0066;AVGPOST=0.9978;RSQ=0.8568;ERATE=0.0005;THETA=0.0011;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26257435 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0136;AVGPOST=0.9979;RSQ=0.9438;ERATE=0.0003;THETA=0.0027;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26257526 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.947;LDAF=0.6619;AVGPOST=0.9719;RSQ=0.9600;ERATE=0.0040;THETA=0.0080;AC=1445;AN=2184 GT:DS:GL:BD 0.66163003 1 1 26257569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5550;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26257597 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.941;LDAF=0.0448;AVGPOST=0.9949;RSQ=0.9549;ERATE=0.0007;THETA=0.0072;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 26257607 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.842;LDAF=0.0078;AVGPOST=0.9989;RSQ=0.9444;ERATE=0.0003;THETA=0.0083;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26257863 . CA C 48 PASS INDEL;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5258;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26257961 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0023;AVGPOST=0.9997;RSQ=0.9439;ERATE=0.0003;THETA=0.0024;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26258056 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0085;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26258134 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.678;LDAF=0.0022;AVGPOST=0.9979;RSQ=0.5924;ERATE=0.0005;THETA=0.0027;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26258202 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0064;AVGPOST=0.9996;RSQ=0.9706;ERATE=0.0003;THETA=0.0071;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26258213 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7922;ERATE=0.0008;THETA=0.0029;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26258292 . TG T 29 PASS INDEL;BAVGPOST=0.999;BRSQ=0.871;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5118;ERATE=0.0005;THETA=0.0047;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26258297 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.605;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7343;ERATE=0.0004;THETA=0.0037;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26258304 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.655;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5249;ERATE=0.0004;THETA=0.0041;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26258344 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7529;ERATE=0.0004;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26258356 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4841;ERATE=0.0006;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26258364 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4313;ERATE=0.0005;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26258455 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0135;AVGPOST=0.9949;RSQ=0.8530;ERATE=0.0004;THETA=0.0049;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26258460 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.937;LDAF=0.0111;AVGPOST=0.9982;RSQ=0.9392;ERATE=0.0004;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26258531 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0065;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26258544 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2428;AVGPOST=0.9930;RSQ=0.9865;ERATE=0.0005;THETA=0.0034;AC=529;AN=2184 GT:DS:GL:BD 0.24221611 0 1 26258665 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.4374;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26258700 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.937;LDAF=0.0098;AVGPOST=0.9969;RSQ=0.8941;ERATE=0.0004;THETA=0.0058;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26258742 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1934;AVGPOST=0.9979;RSQ=0.9946;ERATE=0.0005;THETA=0.0009;AC=421;AN=2184 GT:DS:GL:BD 0.19276556 0 1 26258858 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.800;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7698;ERATE=0.0005;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26258915 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.2427;AVGPOST=0.9971;RSQ=0.9937;ERATE=0.0004;THETA=0.0009;AC=531;AN=2184 GT:DS:GL:BD 0.24313186 0 1 26258926 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5017;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26258947 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26258956 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26258968 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26258986 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26259008 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0138;AVGPOST=0.9968;RSQ=0.9116;ERATE=0.0003;THETA=0.0007;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26259037 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26259200 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0195;AVGPOST=0.9989;RSQ=0.9793;ERATE=0.0003;THETA=0.0005;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 26259213 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26259274 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9375;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26259375 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6745;ERATE=0.0004;THETA=0.0044;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26259437 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.914;LDAF=0.9247;AVGPOST=0.9769;RSQ=0.8899;ERATE=0.0010;THETA=0.0003;AC=2031;AN=2184 GT:DS:GL:BD 0.92994505 1 1 26259451 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.906;LDAF=0.9206;AVGPOST=0.9756;RSQ=0.8883;ERATE=0.0010;THETA=0.0006;AC=2023;AN=2184 GT:DS:GL:BD 0.92628205 1 1 26259651 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7927;ERATE=0.0007;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26259691 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.583;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4970;ERATE=0.0005;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26259702 . G GA 14 PASS INDEL;BAVGPOST=0.990;BRSQ=0.352;LDAF=0.0104;AVGPOST=0.9860;RSQ=0.4486;ERATE=0.0027;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26259715 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0016;AVGPOST=0.9982;RSQ=0.5744;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26259736 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0090;AVGPOST=0.9987;RSQ=0.9361;ERATE=0.0006;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26259859 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0069;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0018;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26259878 rs72508777 C CT 18906 PASS INDEL;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.2170;AVGPOST=0.9928;RSQ=0.9848;ERATE=0.0003;THETA=0.0006;AC=470;AN=2184 GT:DS:GL:BD 0.21520147 0 1 26259880 . T TG 415 PASS INDEL;BAVGPOST=0.947;BRSQ=0.807;LDAF=0.1377;AVGPOST=0.9499;RSQ=0.8556;ERATE=0.0005;THETA=0.0012;AC=302;AN=2184 GT:DS:GL:BD 0.13827839 0 1 26259881 . T TA 338 PASS INDEL;BAVGPOST=0.947;BRSQ=0.807;LDAF=0.1383;AVGPOST=0.9496;RSQ=0.8545;ERATE=0.0005;THETA=0.0010;AC=302;AN=2184 GT:DS:GL:BD 0.13827839 0 1 26259884 . T TC 822 PASS INDEL;BAVGPOST=0.945;BRSQ=0.807;LDAF=0.1401;AVGPOST=0.9486;RSQ=0.8534;ERATE=0.0007;THETA=0.0008;AC=305;AN=2184 GT:DS:GL:BD 0.13965201 0 1 26259904 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0153;AVGPOST=0.9996;RSQ=0.9876;ERATE=0.0004;THETA=0.0071;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26260053 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7358;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26260063 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5512;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26260187 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26260268 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0064;AVGPOST=0.9989;RSQ=0.9322;ERATE=0.0003;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26260354 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9694;ERATE=0.0003;THETA=0.0035;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26260455 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.840;LDAF=0.0134;AVGPOST=0.9946;RSQ=0.8278;ERATE=0.0019;THETA=0.0021;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26260510 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9413;ERATE=0.0003;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26260527 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0134;AVGPOST=0.9979;RSQ=0.9314;ERATE=0.0004;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26260683 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5532;ERATE=0.0005;THETA=0.0047;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26260684 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.9429;AVGPOST=0.9990;RSQ=0.9930;ERATE=0.0004;THETA=0.0031;AC=2060;AN=2184 GT:DS:GL:BD 0.94322342 1 1 26260728 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.7292;AVGPOST=0.9968;RSQ=0.9936;ERATE=0.0006;THETA=0.0011;AC=1595;AN=2184 GT:DS:GL:BD 0.73031133 1 1 26260914 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2004;AVGPOST=0.9970;RSQ=0.9930;ERATE=0.0005;THETA=0.0017;AC=435;AN=2184 GT:DS:GL:BD 0.19917582 0 1 26261011 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0611;AVGPOST=0.9984;RSQ=0.9889;ERATE=0.0004;THETA=0.0006;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 26261174 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5993;ERATE=0.0004;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26261299 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.652;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.3952;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26261358 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.708;LDAF=0.0038;AVGPOST=0.9943;RSQ=0.3942;ERATE=0.0009;THETA=0.0030;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26261366 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.910;LDAF=0.0468;AVGPOST=0.9952;RSQ=0.9555;ERATE=0.0008;THETA=0.0008;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 26261404 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.922;BRSQ=0.747;LDAF=0.1625;AVGPOST=0.9298;RSQ=0.8174;ERATE=0.0028;THETA=0.0011;AC=320;AN=2184 GT:DS:GL:BD 0.14652015 0 1 26261616 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5421;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26261625 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0058;AVGPOST=0.9994;RSQ=0.9478;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26261693 . TA T 1803 PASS INDEL;BAVGPOST=0.618;BRSQ=0.366;LDAF=0.3700;AVGPOST=0.6943;RSQ=0.4742;ERATE=0.0404;THETA=0.0008;AC=732;AN=2184 GT:DS:GL:BD 0.33516484 0 1 26261703 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.941;LDAF=0.0148;AVGPOST=0.9975;RSQ=0.9286;ERATE=0.0005;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 26261713 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6894;ERATE=0.0004;THETA=0.0028;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26261813 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.6858;ERATE=0.0007;THETA=0.0026;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26261814 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.792;LDAF=0.0023;AVGPOST=0.9996;RSQ=0.9169;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26261935 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0003;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26262049 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5857;ERATE=0.0004;THETA=0.0063;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26262054 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26262065 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6817;ERATE=0.0003;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26262066 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26262082 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26262165 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9767;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26262232 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26262250 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7591;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26262432 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4718;ERATE=0.0003;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26262644 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0024;AVGPOST=0.9986;RSQ=0.7715;ERATE=0.0004;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26262651 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.9753;AVGPOST=0.9995;RSQ=0.9911;ERATE=0.0003;THETA=0.0006;AC=2130;AN=2184 GT:DS:GL:BD 0.97527474 1 1 26262668 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9882;ERATE=0.0003;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26262781 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.6843;AVGPOST=0.9944;RSQ=0.9890;ERATE=0.0006;THETA=0.0007;AC=1498;AN=2184 GT:DS:GL:BD 0.68589741 1 1 26262878 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.9889;AVGPOST=0.9968;RSQ=0.8709;ERATE=0.0006;THETA=0.0015;AC=2162;AN=2184 GT:DS:GL:BD 0.98992676 1 1 26262902 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.695;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5320;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26262915 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.551;LDAF=0.0036;AVGPOST=0.9963;RSQ=0.5915;ERATE=0.0008;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26262924 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0059;AVGPOST=0.9992;RSQ=0.9471;ERATE=0.0003;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26262972 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0035;AVGPOST=0.9989;RSQ=0.8838;ERATE=0.0004;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26263041 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.3967;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26263055 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.650;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5542;ERATE=0.0004;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26263094 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.959;LDAF=0.0138;AVGPOST=0.9965;RSQ=0.9002;ERATE=0.0004;THETA=0.0006;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26263138 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0350;AVGPOST=0.9993;RSQ=0.9927;ERATE=0.0003;THETA=0.0007;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 26263311 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6400;ERATE=0.0003;THETA=0.0063;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26263318 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8967;ERATE=0.0003;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26263367 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26263564 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.683;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.5516;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26263571 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9461;ERATE=0.0003;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26263644 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5968;ERATE=0.0003;THETA=0.0046;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26264508 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.622;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4610;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26264513 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.833;LDAF=0.0072;AVGPOST=0.9975;RSQ=0.8527;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26264546 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.6631;AVGPOST=0.9954;RSQ=0.9912;ERATE=0.0007;THETA=0.0007;AC=1451;AN=2184 GT:DS:GL:BD 0.66437727 1 1 26264660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.343;LDAF=0.0106;AVGPOST=0.9819;RSQ=0.3012;ERATE=0.0038;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26264674 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.438;LDAF=0.0021;AVGPOST=0.9973;RSQ=0.4421;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26264707 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.698;LDAF=0.0075;AVGPOST=0.9962;RSQ=0.7828;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26264718 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.913;LDAF=0.0087;AVGPOST=0.9968;RSQ=0.8441;ERATE=0.0005;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26264852 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0051;AVGPOST=0.9964;RSQ=0.7305;ERATE=0.0005;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26264874 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.656;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4769;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26264948 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.555;LDAF=0.0035;AVGPOST=0.9980;RSQ=0.7646;ERATE=0.0007;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26264993 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.661;LDAF=0.0019;AVGPOST=0.9973;RSQ=0.4219;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26265051 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.969;LDAF=0.6486;AVGPOST=0.9649;RSQ=0.9464;ERATE=0.0028;THETA=0.0005;AC=1435;AN=2184 GT:DS:GL:BD 0.65705127 1 1 26265117 . AAAT A 1280 PASS INDEL;BAVGPOST=0.998;BRSQ=0.945;LDAF=0.0164;AVGPOST=0.9980;RSQ=0.9540;ERATE=0.0004;THETA=0.0009;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 26265167 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6637;AVGPOST=0.9986;RSQ=0.9974;ERATE=0.0005;THETA=0.0007;AC=1451;AN=2184 GT:DS:GL:BD 0.66437727 1 1 26265192 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8284;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26265249 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.792;LDAF=0.0053;AVGPOST=0.9957;RSQ=0.6804;ERATE=0.0014;THETA=0.0030;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26265299 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.541;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26265358 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.806;LDAF=0.0079;AVGPOST=0.9958;RSQ=0.7830;ERATE=0.0006;THETA=0.0014;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26265474 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.986;LDAF=0.6649;AVGPOST=0.9916;RSQ=0.9861;ERATE=0.0010;THETA=0.0010;AC=1451;AN=2184 GT:DS:GL:BD 0.66437727 1 1 26265521 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.5503;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26265575 rs61249209 ATATATC A 19875 PASS INDEL;BAVGPOST=0.835;BRSQ=0.716;LDAF=0.5176;AVGPOST=0.8059;RSQ=0.7056;ERATE=0.0426;THETA=0.0007;AC=1202;AN=2184 GT:DS:GL:BD 0.55036628 1 1 26265601 . ATATC A 262 PASS INDEL;BAVGPOST=0.928;BRSQ=0.348;LDAF=0.0825;AVGPOST=0.8934;RSQ=0.4389;ERATE=0.0064;THETA=0.0007;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 26265605 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.955;BRSQ=0.449;LDAF=0.0699;AVGPOST=0.9329;RSQ=0.5755;ERATE=0.0084;THETA=0.0013;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 26265609 . ATATC A 5984 PASS INDEL;BAVGPOST=0.749;BRSQ=0.504;LDAF=0.2937;AVGPOST=0.7722;RSQ=0.5521;ERATE=0.0113;THETA=0.0005;AC=541;AN=2184 GT:DS:GL:BD 0.24771062 0 1 26265611 . ATCTATATATC A 19895 PASS INDEL;BAVGPOST=0.790;BRSQ=0.677;LDAF=0.5231;AVGPOST=0.8075;RSQ=0.7339;ERATE=0.0127;THETA=0.0008;AC=1201;AN=2184 GT:DS:GL:BD 0.54990840 1 1 26265617 . ATATC A 2656 PASS INDEL;BAVGPOST=0.763;BRSQ=0.587;LDAF=0.3401;AVGPOST=0.7916;RSQ=0.6576;ERATE=0.0016;THETA=0.0014;AC=702;AN=2184 GT:DS:GL:BD 0.32142857 0 1 26265619 . ATC A 12411 PASS INDEL;BAVGPOST=0.820;BRSQ=0.744;LDAF=0.5661;AVGPOST=0.8537;RSQ=0.8023;ERATE=0.0047;THETA=0.0010;AC=1294;AN=2184 GT:DS:GL:BD 0.59249085 1 1 26265620 . TCTATATATA T 11266 PASS INDEL;BAVGPOST=0.763;BRSQ=0.586;LDAF=0.3533;AVGPOST=0.7715;RSQ=0.6230;ERATE=0.0115;THETA=0.0029;AC=722;AN=2184 GT:DS:GL:BD 0.33058608 0 1 26265705 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0035;AVGPOST=0.9958;RSQ=0.5495;ERATE=0.0005;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26265767 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.967;LDAF=0.0754;AVGPOST=0.9815;RSQ=0.9087;ERATE=0.0031;THETA=0.0056;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 26265780 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.965;LDAF=0.0061;AVGPOST=0.9984;RSQ=0.8744;ERATE=0.0004;THETA=0.0028;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26265983 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7705;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26266006 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26266138 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.993;LDAF=0.6170;AVGPOST=0.9969;RSQ=0.9958;ERATE=0.0006;THETA=0.0009;AC=1348;AN=2184 GT:DS:GL:BD 0.61721611 1 1 26266174 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.908;LDAF=0.0104;AVGPOST=0.9964;RSQ=0.8624;ERATE=0.0005;THETA=0.0011;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26266209 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2122;AVGPOST=0.9988;RSQ=0.9969;ERATE=0.0005;THETA=0.0016;AC=462;AN=2184 GT:DS:GL:BD 0.21153846 0 1 26266270 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0345;AVGPOST=0.9994;RSQ=0.9930;ERATE=0.0003;THETA=0.0013;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 26266441 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26266489 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8320;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26266513 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6649;AVGPOST=0.9993;RSQ=0.9986;ERATE=0.0004;THETA=0.0005;AC=1453;AN=2184 GT:DS:GL:BD 0.66529304 1 1 26266678 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9998;RSQ=0.9710;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26266697 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6649;AVGPOST=0.9990;RSQ=0.9980;ERATE=0.0006;THETA=0.0031;AC=1453;AN=2184 GT:DS:GL:BD 0.66529304 1 1 26266769 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6133;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26267035 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7258;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26267057 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5592;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26267098 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6237;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26267217 . TA T 93 PASS INDEL;BAVGPOST=0.996;BRSQ=0.403;LDAF=0.0038;AVGPOST=0.9943;RSQ=0.3927;ERATE=0.0013;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26267260 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2098;AVGPOST=0.9966;RSQ=0.9928;ERATE=0.0004;THETA=0.0005;AC=456;AN=2184 GT:DS:GL:BD 0.20879121 0 1 26267340 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6724;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26267426 . T TG 132 PASS INDEL;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7901;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26267521 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2084;AVGPOST=0.9996;RSQ=0.9990;ERATE=0.0003;THETA=0.0009;AC=454;AN=2184 GT:DS:GL:BD 0.20787546 0 1 26267635 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9263;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26267686 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6629;AVGPOST=0.9963;RSQ=0.9939;ERATE=0.0015;THETA=0.0009;AC=1447;AN=2184 GT:DS:GL:BD 0.66254580 1 1 26267768 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26268022 . G GT 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5580;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26268029 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5313;ERATE=0.0004;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26268035 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4841;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26268141 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0106;AVGPOST=0.9989;RSQ=0.9595;ERATE=0.0003;THETA=0.0031;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26268188 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4432;ERATE=0.0005;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26268212 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26268217 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0048;AVGPOST=0.9978;RSQ=0.8238;ERATE=0.0004;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26268403 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.644;LDAF=0.0069;AVGPOST=0.9952;RSQ=0.7261;ERATE=0.0007;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26268407 MERGED_DEL_2_2476 CCAAATCTTCTACTTCTGAAAGTCTTCCAATGAAAAAGAGAAGCATATCTATGTACCCATATTGGTAAAGTATCTGACCTTTAGGGATAAAGGGGCTGGGCTAGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGGTGAGACAGGCAGATCACCTGAGGTCAAGAGTTCGAGACCAGCCTGGCCGA C . . SV;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0106;AVGPOST=0.9954;RSQ=0.8042;ERATE=0.0011;THETA=0.0007;CIEND=-66,87;CIPOS=-82,75;END=26269100;HOMLEN=4;HOMSEQ=CAAA;SOURCE=AssembledBreakpoints_26268407_ GT:DS:GL:BD 0.00869963 0 1 26268454 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0102;AVGPOST=0.9997;RSQ=0.9861;ERATE=0.0004;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26268560 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4676;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26268675 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.466;LDAF=0.0059;AVGPOST=0.9924;RSQ=0.4762;ERATE=0.0011;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26268713 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.979;LDAF=0.0705;AVGPOST=0.9879;RSQ=0.9320;ERATE=0.0005;THETA=0.0006;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 26268760 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0036;AVGPOST=0.9988;RSQ=0.8761;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26268895 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8660;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26268896 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.915;LDAF=0.0128;AVGPOST=0.9980;RSQ=0.9435;ERATE=0.0003;THETA=0.0007;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26268916 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0243;AVGPOST=0.9988;RSQ=0.9836;ERATE=0.0003;THETA=0.0007;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 26269054 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0004;AVGPOST=0.9995;RSQ=0.4885;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26269064 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0056;AVGPOST=0.9999;RSQ=0.9881;ERATE=0.0003;THETA=0.0023;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26269152 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0553;AVGPOST=0.9998;RSQ=0.9985;ERATE=0.0003;THETA=0.0006;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 26269260 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8704;ERATE=0.0003;THETA=0.0030;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26269579 . T TA 47 PASS INDEL;BAVGPOST=0.990;BRSQ=0.497;LDAF=0.0166;AVGPOST=0.9783;RSQ=0.5023;ERATE=0.0059;THETA=0.0007;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26269628 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8576;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26269640 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7891;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26269730 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0559;AVGPOST=0.9977;RSQ=0.9842;ERATE=0.0005;THETA=0.0005;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 26269777 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0029;AVGPOST=0.9989;RSQ=0.8234;ERATE=0.0004;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26269784 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.6598;AVGPOST=0.9947;RSQ=0.9905;ERATE=0.0008;THETA=0.0026;AC=1445;AN=2184 GT:DS:GL:BD 0.66163003 1 1 26269851 . GA G 3065 PASS INDEL;BAVGPOST=0.996;BRSQ=0.936;LDAF=0.0268;AVGPOST=0.9972;RSQ=0.9643;ERATE=0.0005;THETA=0.0006;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 26270030 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0080;AVGPOST=0.9958;RSQ=0.7946;ERATE=0.0005;THETA=0.0028;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26270069 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.729;LDAF=0.0031;AVGPOST=0.9966;RSQ=0.5780;ERATE=0.0005;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26270088 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.973;LDAF=0.6591;AVGPOST=0.9929;RSQ=0.9881;ERATE=0.0011;THETA=0.0003;AC=1443;AN=2184 GT:DS:GL:BD 0.66071427 1 1 26270103 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.973;LDAF=0.6591;AVGPOST=0.9932;RSQ=0.9886;ERATE=0.0006;THETA=0.0003;AC=1444;AN=2184 GT:DS:GL:BD 0.66117215 1 1 26270122 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.985;LDAF=0.6601;AVGPOST=0.9946;RSQ=0.9908;ERATE=0.0006;THETA=0.0006;AC=1445;AN=2184 GT:DS:GL:BD 0.66163003 1 1 26270130 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7784;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26270131 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.830;LDAF=0.0087;AVGPOST=0.9978;RSQ=0.8911;ERATE=0.0007;THETA=0.0013;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26270139 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0339;AVGPOST=0.9994;RSQ=0.9919;ERATE=0.0003;THETA=0.0008;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 26270150 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9437;ERATE=0.0004;THETA=0.0026;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26270317 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.729;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5602;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26270345 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5198;ERATE=0.0005;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26270444 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.801;LDAF=0.0052;AVGPOST=0.9961;RSQ=0.7425;ERATE=0.0004;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26270526 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0011;AVGPOST=0.9984;RSQ=0.3686;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26270677 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26270713 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.985;LDAF=0.6854;AVGPOST=0.9932;RSQ=0.9877;ERATE=0.0006;THETA=0.0010;AC=1501;AN=2184 GT:DS:GL:BD 0.68727106 1 1 26270751 . AT A 173 PASS INDEL;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9302;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26270773 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0383;AVGPOST=0.9991;RSQ=0.9888;ERATE=0.0004;THETA=0.0107;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 26270776 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8914;ERATE=0.0004;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26270974 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26271049 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0028;AVGPOST=0.9980;RSQ=0.6934;ERATE=0.0005;THETA=0.0064;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26271071 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.437;LDAF=0.0030;AVGPOST=0.9957;RSQ=0.4705;ERATE=0.0010;THETA=0.0031;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26271150 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.940;LDAF=0.0343;AVGPOST=0.9988;RSQ=0.9858;ERATE=0.0004;THETA=0.0005;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 26271160 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.734;LDAF=0.0017;AVGPOST=0.9979;RSQ=0.5324;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26271202 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.921;LDAF=0.9673;AVGPOST=0.9941;RSQ=0.9306;ERATE=0.0006;THETA=0.0011;AC=2117;AN=2184 GT:DS:GL:BD 0.96932232 1 1 26271422 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6875;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26271522 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0004;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26271572 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26271696 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6710;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26271780 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.827;LDAF=0.0051;AVGPOST=0.9986;RSQ=0.8981;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26271788 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0072;AVGPOST=0.9989;RSQ=0.9334;ERATE=0.0004;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26271865 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0031;AVGPOST=0.9986;RSQ=0.8087;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26272139 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.962;LDAF=0.6025;AVGPOST=0.9856;RSQ=0.9761;ERATE=0.0019;THETA=0.0008;AC=1322;AN=2184 GT:DS:GL:BD 0.60531133 1 1 26272269 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9997;RSQ=0.9784;ERATE=0.0004;THETA=0.0022;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26272385 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8567;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26272386 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.5993;ERATE=0.0009;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26272497 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0124;AVGPOST=0.9999;RSQ=0.9967;ERATE=0.0003;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26272636 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.7984;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26272672 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2339;AVGPOST=0.9987;RSQ=0.9969;ERATE=0.0004;THETA=0.0004;AC=509;AN=2184 GT:DS:GL:BD 0.23305860 0 1 26272696 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6941;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26272883 . AC A 95 PASS INDEL;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0023;AVGPOST=0.9973;RSQ=0.5256;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26272903 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.741;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.5806;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26273039 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.840;LDAF=0.0297;AVGPOST=0.9898;RSQ=0.8584;ERATE=0.0013;THETA=0.0003;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 26273058 . C CA 99 PASS INDEL;BAVGPOST=0.990;BRSQ=0.477;LDAF=0.0184;AVGPOST=0.9797;RSQ=0.5412;ERATE=0.0044;THETA=0.0033;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26273140 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7915;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26273167 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8786;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26273254 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0023;AVGPOST=0.9986;RSQ=0.7479;ERATE=0.0005;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26273332 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5384;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26273333 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26273338 . C CT 76 PASS INDEL;BAVGPOST=0.997;BRSQ=0.385;LDAF=0.0074;AVGPOST=0.9881;RSQ=0.3586;ERATE=0.0031;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26273371 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9076;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26273397 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0108;AVGPOST=0.9993;RSQ=0.9726;ERATE=0.0004;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26273428 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.771;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26273445 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2346;AVGPOST=0.9969;RSQ=0.9927;ERATE=0.0009;THETA=0.0008;AC=512;AN=2184 GT:DS:GL:BD 0.23443224 0 1 26273595 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0022;AVGPOST=0.9986;RSQ=0.7304;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26273625 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.862;LDAF=0.0040;AVGPOST=0.9984;RSQ=0.8233;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26273644 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6802;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26273693 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26273702 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.723;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5188;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26273753 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7877;ERATE=0.0004;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26273797 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8388;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26273839 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0198;AVGPOST=0.9987;RSQ=0.9707;ERATE=0.0004;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 26273903 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=0.9991;RSQ=0.9559;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26273959 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.973;LDAF=0.1978;AVGPOST=0.9883;RSQ=0.9734;ERATE=0.0024;THETA=0.0003;AC=427;AN=2184 GT:DS:GL:BD 0.19551282 0 1 26273994 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.731;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6159;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26274068 rs34780320 TA T 37051 PASS INDEL;BAVGPOST=0.982;BRSQ=0.974;LDAF=0.5409;AVGPOST=0.9945;RSQ=0.9919;ERATE=0.0011;THETA=0.0008;AC=1184;AN=2184 GT:DS:GL:BD 0.54212457 1 1 26274156 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.5402;AVGPOST=0.9976;RSQ=0.9966;ERATE=0.0006;THETA=0.0007;AC=1181;AN=2184 GT:DS:GL:BD 0.54075092 1 1 26274213 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.986;LDAF=0.5579;AVGPOST=0.9952;RSQ=0.9932;ERATE=0.0006;THETA=0.0006;AC=1223;AN=2184 GT:DS:GL:BD 0.55998170 1 1 26274238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.665;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4979;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26274342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5068;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26274343 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.6017;AVGPOST=0.9906;RSQ=0.9854;ERATE=0.0020;THETA=0.0004;AC=1317;AN=2184 GT:DS:GL:BD 0.60302198 1 1 26274438 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0124;AVGPOST=0.9995;RSQ=0.9827;ERATE=0.0003;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26274450 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0015;AVGPOST=0.9978;RSQ=0.4376;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26274490 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0049;AVGPOST=0.9953;RSQ=0.6338;ERATE=0.0006;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26274620 . C CA 109 PASS INDEL;BAVGPOST=0.998;BRSQ=0.713;LDAF=0.0028;AVGPOST=0.9984;RSQ=0.7510;ERATE=0.0007;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26274635 . A AAAC 302 PASS INDEL;BAVGPOST=0.999;BRSQ=0.727;LDAF=0.0056;AVGPOST=0.9949;RSQ=0.6374;ERATE=0.0011;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26274752 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.781;LDAF=0.0064;AVGPOST=0.9942;RSQ=0.6485;ERATE=0.0007;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26274828 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.965;LDAF=0.0196;AVGPOST=0.9989;RSQ=0.9762;ERATE=0.0004;THETA=0.0006;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 26274980 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0015;AVGPOST=0.9978;RSQ=0.4103;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26275036 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7359;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26275152 . AC A 41 PASS INDEL;BAVGPOST=0.999;BRSQ=0.718;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5729;ERATE=0.0006;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26275241 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26275272 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26275277 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26275324 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26275374 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8015;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26275382 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26275466 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0043;AVGPOST=0.9989;RSQ=0.9040;ERATE=0.0003;THETA=0.0018;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26275517 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8260;ERATE=0.0004;THETA=0.0044;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26275548 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8093;AVGPOST=0.9989;RSQ=0.9972;ERATE=0.0004;THETA=0.0009;AC=1768;AN=2184 GT:DS:GL:BD 0.80952382 1 1 26275589 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26275683 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.988;LDAF=0.8074;AVGPOST=0.9968;RSQ=0.9932;ERATE=0.0006;THETA=0.0004;AC=1765;AN=2184 GT:DS:GL:BD 0.80815017 1 1 26275871 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.957;LDAF=0.2079;AVGPOST=0.9936;RSQ=0.9857;ERATE=0.0004;THETA=0.0004;AC=454;AN=2184 GT:DS:GL:BD 0.20787546 0 1 26275891 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0017;AVGPOST=0.9996;RSQ=0.9195;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26275944 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0084;AVGPOST=0.9986;RSQ=0.9294;ERATE=0.0004;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26276038 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.946;BRSQ=0.853;LDAF=0.8075;AVGPOST=0.9416;RSQ=0.8687;ERATE=0.0070;THETA=0.0007;AC=1785;AN=2184 GT:DS:GL:BD 0.81730771 1 1 26276128 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.567;LDAF=0.0019;AVGPOST=0.9985;RSQ=0.6893;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26276199 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.7617;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26276335 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8604;AVGPOST=0.9994;RSQ=0.9980;ERATE=0.0004;THETA=0.0006;AC=1880;AN=2184 GT:DS:GL:BD 0.86080587 1 1 26276589 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0005;AVGPOST=0.9994;RSQ=0.5110;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26276664 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26276920 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26276945 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0264;AVGPOST=0.9982;RSQ=0.9754;ERATE=0.0004;THETA=0.0005;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 26276958 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8714;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26277048 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26277088 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.974;LDAF=0.8014;AVGPOST=0.9808;RSQ=0.9592;ERATE=0.0027;THETA=0.0003;AC=1766;AN=2184 GT:DS:GL:BD 0.80860806 1 1 26277280 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26277281 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26277524 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.950;BRSQ=0.936;LDAF=0.5318;AVGPOST=0.9705;RSQ=0.9613;ERATE=0.0010;THETA=0.0004;AC=1164;AN=2184 GT:DS:GL:BD 0.53296703 1 1 26277601 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.843;LDAF=0.0043;AVGPOST=0.9977;RSQ=0.7621;ERATE=0.0007;THETA=0.0040;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26277609 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.576;LDAF=0.0077;AVGPOST=0.9936;RSQ=0.7076;ERATE=0.0005;THETA=0.0011;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26277620 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.956;LDAF=0.2120;AVGPOST=0.9889;RSQ=0.9752;ERATE=0.0009;THETA=0.0008;AC=466;AN=2184 GT:DS:GL:BD 0.21336997 0 1 26277679 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.661;LDAF=0.0050;AVGPOST=0.9934;RSQ=0.5295;ERATE=0.0015;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26277682 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.882;LDAF=0.0138;AVGPOST=0.9962;RSQ=0.8796;ERATE=0.0009;THETA=0.0008;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26277722 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9699;AVGPOST=0.9971;RSQ=0.9596;ERATE=0.0007;THETA=0.0005;AC=2121;AN=2184 GT:DS:GL:BD 0.97115386 1 1 26277773 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7921;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26277813 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.994;LDAF=0.5590;AVGPOST=0.9961;RSQ=0.9941;ERATE=0.0006;THETA=0.0004;AC=1219;AN=2184 GT:DS:GL:BD 0.55815017 1 1 26277886 . T TTTTA 203 PASS INDEL;BAVGPOST=0.997;BRSQ=0.638;LDAF=0.0094;AVGPOST=0.9905;RSQ=0.5694;ERATE=0.0016;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26277915 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0025;AVGPOST=0.9968;RSQ=0.4861;ERATE=0.0006;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26278141 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.987;LDAF=0.8040;AVGPOST=0.9982;RSQ=0.9957;ERATE=0.0006;THETA=0.0007;AC=1757;AN=2184 GT:DS:GL:BD 0.80448717 1 1 26278185 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.6872;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26278253 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.8631;AVGPOST=0.9979;RSQ=0.9941;ERATE=0.0004;THETA=0.0008;AC=1885;AN=2184 GT:DS:GL:BD 0.86309522 1 1 26278314 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5624;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26278319 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9244;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26278325 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0120;AVGPOST=0.9997;RSQ=0.9887;ERATE=0.0003;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26278364 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26278462 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8510;ERATE=0.0003;THETA=0.0037;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26278550 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7344;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26278700 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.973;LDAF=0.5737;AVGPOST=0.9945;RSQ=0.9915;ERATE=0.0005;THETA=0.0007;AC=1254;AN=2184 GT:DS:GL:BD 0.57417583 1 1 26278784 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0072;AVGPOST=0.9993;RSQ=0.9468;ERATE=0.0004;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26278833 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.970;LDAF=0.5581;AVGPOST=0.9967;RSQ=0.9949;ERATE=0.0003;THETA=0.0006;AC=1221;AN=2184 GT:DS:GL:BD 0.55906594 1 1 26278867 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.945;LDAF=0.7689;AVGPOST=0.9771;RSQ=0.9582;ERATE=0.0006;THETA=0.0004;AC=1682;AN=2184 GT:DS:GL:BD 0.77014655 1 1 26278868 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.945;LDAF=0.7696;AVGPOST=0.9764;RSQ=0.9562;ERATE=0.0009;THETA=0.0007;AC=1685;AN=2184 GT:DS:GL:BD 0.77152014 1 1 26278872 . C CA 1385 PASS INDEL;BAVGPOST=0.996;BRSQ=0.931;LDAF=0.0124;AVGPOST=0.9972;RSQ=0.9196;ERATE=0.0003;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26278953 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9562;ERATE=0.0003;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26279047 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6496;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26279095 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.5747;AVGPOST=0.9954;RSQ=0.9929;ERATE=0.0006;THETA=0.0007;AC=1259;AN=2184 GT:DS:GL:BD 0.57646519 1 1 26279154 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5951;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26279324 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0017;AVGPOST=0.9995;RSQ=0.9023;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26279382 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=0.9993;RSQ=0.4685;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26279466 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8061;ERATE=0.0003;THETA=0.0030;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26279510 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0036;AVGPOST=0.9993;RSQ=0.9209;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26279518 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0130;AVGPOST=0.9985;RSQ=0.9552;ERATE=0.0003;THETA=0.0013;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26280061 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26280069 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4199;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26280087 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.321;LDAF=0.0118;AVGPOST=0.9827;RSQ=0.4596;ERATE=0.0013;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26280133 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.951;BRSQ=0.891;LDAF=0.8082;AVGPOST=0.9664;RSQ=0.9251;ERATE=0.0008;THETA=0.0003;AC=1779;AN=2184 GT:DS:GL:BD 0.81456041 1 1 26280139 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.976;LDAF=0.0202;AVGPOST=0.9945;RSQ=0.8903;ERATE=0.0007;THETA=0.0006;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 26280140 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.920;LDAF=0.7512;AVGPOST=0.9594;RSQ=0.9305;ERATE=0.0024;THETA=0.0006;AC=1660;AN=2184 GT:DS:GL:BD 0.76007324 1 1 26280191 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.949;LDAF=0.7957;AVGPOST=0.9877;RSQ=0.9759;ERATE=0.0008;THETA=0.0014;AC=1746;AN=2184 GT:DS:GL:BD 0.79945058 1 1 26280204 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.745;LDAF=0.0087;AVGPOST=0.9945;RSQ=0.7429;ERATE=0.0007;THETA=0.0015;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26280248 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.7938;ERATE=0.0004;THETA=0.0017;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26280265 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6855;ERATE=0.0004;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26280292 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.977;LDAF=0.7991;AVGPOST=0.9940;RSQ=0.9867;ERATE=0.0006;THETA=0.0006;AC=1750;AN=2184 GT:DS:GL:BD 0.80128205 1 1 26280342 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.7133;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26280431 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8761;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26280486 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.746;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7755;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26280571 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.958;BRSQ=0.918;LDAF=0.7633;AVGPOST=0.9768;RSQ=0.9594;ERATE=0.0006;THETA=0.0010;AC=1670;AN=2184 GT:DS:GL:BD 0.76465201 1 1 26280595 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.887;LDAF=0.0151;AVGPOST=0.9970;RSQ=0.9196;ERATE=0.0006;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 26280596 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.955;BRSQ=0.906;LDAF=0.7987;AVGPOST=0.9519;RSQ=0.8948;ERATE=0.0041;THETA=0.0011;AC=1767;AN=2184 GT:DS:GL:BD 0.80906594 1 1 26280726 rs72373385 CAA C 1224 PASS INDEL;BAVGPOST=0.624;BRSQ=0.373;LDAF=0.5242;AVGPOST=0.6479;RSQ=0.4138;ERATE=0.0330;THETA=0.0056;AC=1186;AN=2184 GT:DS:GL:BD 0.54304028 1 1 26280793 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7407;ERATE=0.0003;THETA=0.0046;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26280800 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0449;AVGPOST=0.9989;RSQ=0.9908;ERATE=0.0003;THETA=0.0036;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 26280873 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0071;AVGPOST=0.9968;RSQ=0.8456;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26280983 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.726;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26280997 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.8865;ERATE=0.0003;THETA=0.0022;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26281008 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0220;AVGPOST=0.9989;RSQ=0.9843;ERATE=0.0004;THETA=0.0007;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 26281126 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7509;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26281129 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.638;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5790;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26281144 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.727;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5438;ERATE=0.0004;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26281228 . TG T 372 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0040;AVGPOST=0.9984;RSQ=0.8482;ERATE=0.0004;THETA=0.0030;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26281308 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0281;AVGPOST=0.9990;RSQ=0.9851;ERATE=0.0004;THETA=0.0006;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 26281328 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.815;LDAF=0.0020;AVGPOST=0.9980;RSQ=0.6542;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26281334 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8871;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26281408 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6523;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26281415 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7316;ERATE=0.0005;THETA=0.0064;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26281561 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.8225;AVGPOST=0.9978;RSQ=0.9945;ERATE=0.0004;THETA=0.0080;AC=1797;AN=2184 GT:DS:GL:BD 0.82280219 1 1 26281660 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0025;AVGPOST=0.9991;RSQ=0.8390;ERATE=0.0006;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26281730 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4926;ERATE=0.0004;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26281749 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.7981;ERATE=0.0005;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26281948 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.949;LDAF=0.8112;AVGPOST=0.9728;RSQ=0.9418;ERATE=0.0044;THETA=0.0015;AC=1782;AN=2184 GT:DS:GL:BD 0.81593406 1 1 26282185 . GAGAA G 86 PASS INDEL;BAVGPOST=1.000;BRSQ=0.708;LDAF=0.0024;AVGPOST=0.9970;RSQ=0.5046;ERATE=0.0008;THETA=0.0070;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26282242 rs56708421 GAGGA G 53240 PASS INDEL;BAVGPOST=0.984;BRSQ=0.980;LDAF=0.5583;AVGPOST=0.9697;RSQ=0.9596;ERATE=0.0059;THETA=0.0004;AC=1233;AN=2184 GT:DS:GL:BD 0.56456041 1 1 26282279 . AG A 22 PASS INDEL;BAVGPOST=0.998;BRSQ=0.620;LDAF=0.0066;AVGPOST=0.9960;RSQ=0.7842;ERATE=0.0005;THETA=0.0029;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26282295 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.974;LDAF=0.5552;AVGPOST=0.9808;RSQ=0.9749;ERATE=0.0043;THETA=0.0008;AC=1225;AN=2184 GT:DS:GL:BD 0.56089741 1 1 26282308 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.699;LDAF=0.0163;AVGPOST=0.9855;RSQ=0.6703;ERATE=0.0039;THETA=0.0006;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26282313 rs34602966 GAAAGAAAGAAA G 591 PASS INDEL;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0024;AVGPOST=0.9973;RSQ=0.5662;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26282451 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9251;ERATE=0.0003;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26282631 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0004;THETA=0.0059;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26282691 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2189;AVGPOST=0.9960;RSQ=0.9924;ERATE=0.0004;THETA=0.0013;AC=479;AN=2184 GT:DS:GL:BD 0.21932234 0 1 26282972 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6563;ERATE=0.0004;THETA=0.0040;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26283006 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.878;LDAF=0.0303;AVGPOST=0.9924;RSQ=0.8887;ERATE=0.0007;THETA=0.0006;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 26283049 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5670;AVGPOST=0.9985;RSQ=0.9981;ERATE=0.0004;THETA=0.0003;AC=1239;AN=2184 GT:DS:GL:BD 0.56730771 1 1 26283246 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7661;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26283257 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.440;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4534;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26283386 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.6157;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26283537 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0020;AVGPOST=0.9990;RSQ=0.7817;ERATE=0.0005;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26283538 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7877;ERATE=0.0004;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26283604 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.614;LDAF=0.0207;AVGPOST=0.9762;RSQ=0.5605;ERATE=0.0052;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26283778 . G GCC 37745 PASS INDEL;BAVGPOST=0.984;BRSQ=0.976;LDAF=0.5558;AVGPOST=0.9707;RSQ=0.9606;ERATE=0.0059;THETA=0.0002;AC=1223;AN=2184 GT:DS:GL:BD 0.55998170 1 1 26283803 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9349;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26283829 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26283834 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9699;AVGPOST=0.9994;RSQ=0.9925;ERATE=0.0003;THETA=0.0004;AC=2118;AN=2184 GT:DS:GL:BD 0.96978021 1 1 26283838 . GAAGT G 249 PASS INDEL;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26283961 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1982;AVGPOST=0.9971;RSQ=0.9933;ERATE=0.0006;THETA=0.0008;AC=431;AN=2184 GT:DS:GL:BD 0.19734432 0 1 26284104 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0138;AVGPOST=0.9995;RSQ=0.9811;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26284117 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.8523;AVGPOST=0.9977;RSQ=0.9940;ERATE=0.0004;THETA=0.0042;AC=1862;AN=2184 GT:DS:GL:BD 0.85256410 1 1 26284148 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6276;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26284217 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.818;LDAF=0.0099;AVGPOST=0.9972;RSQ=0.8841;ERATE=0.0004;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26284281 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0147;AVGPOST=0.9994;RSQ=0.9810;ERATE=0.0003;THETA=0.0008;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 26284404 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7452;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26284414 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0102;AVGPOST=0.9987;RSQ=0.9474;ERATE=0.0004;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26284425 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0016;AVGPOST=0.9980;RSQ=0.5611;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26284432 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5943;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26284626 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0229;AVGPOST=0.9978;RSQ=0.9591;ERATE=0.0004;THETA=0.0007;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 26284758 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6347;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26284863 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.684;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5445;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26284884 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.984;LDAF=0.5815;AVGPOST=0.9918;RSQ=0.9889;ERATE=0.0030;THETA=0.0007;AC=1272;AN=2184 GT:DS:GL:BD 0.58241761 1 1 26284889 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0124;AVGPOST=0.9989;RSQ=0.9649;ERATE=0.0004;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26284986 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7785;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26285049 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.5950;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26285077 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6107;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26285153 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26285168 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7153;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26285181 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0025;AVGPOST=0.9978;RSQ=0.6962;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26285306 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.867;LDAF=0.0098;AVGPOST=0.9964;RSQ=0.8461;ERATE=0.0004;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26285400 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6425;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26285418 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0059;AVGPOST=0.9993;RSQ=0.9537;ERATE=0.0003;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26285444 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7677;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26285451 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9116;ERATE=0.0003;THETA=0.0019;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26285541 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0025;AVGPOST=0.9979;RSQ=0.7021;ERATE=0.0005;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26285790 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.875;LDAF=0.0087;AVGPOST=0.9987;RSQ=0.9430;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26285792 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0039;AVGPOST=0.9970;RSQ=0.7332;ERATE=0.0008;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26285817 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0064;AVGPOST=0.9981;RSQ=0.9090;ERATE=0.0004;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26285923 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.979;LDAF=0.1626;AVGPOST=0.9936;RSQ=0.9817;ERATE=0.0005;THETA=0.0007;AC=356;AN=2184 GT:DS:GL:BD 0.16300367 0 1 26285988 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.739;LDAF=0.0113;AVGPOST=0.9931;RSQ=0.7658;ERATE=0.0006;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26286004 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0103;AVGPOST=0.9978;RSQ=0.9204;ERATE=0.0004;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26286028 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0128;AVGPOST=0.9993;RSQ=0.9760;ERATE=0.0004;THETA=0.0050;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26286113 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0036;AVGPOST=0.9962;RSQ=0.6019;ERATE=0.0005;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26286197 . CA C 98 PASS INDEL;BAVGPOST=0.968;BRSQ=0.450;LDAF=0.0478;AVGPOST=0.9393;RSQ=0.4718;ERATE=0.0137;THETA=0.0005;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 26286220 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5771;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26286254 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.851;LDAF=0.0059;AVGPOST=0.9989;RSQ=0.9310;ERATE=0.0004;THETA=0.0014;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26286488 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5123;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26286537 . CTGAGA C 1616 PASS INDEL;BAVGPOST=0.997;BRSQ=0.776;LDAF=0.0111;AVGPOST=0.9947;RSQ=0.8082;ERATE=0.0004;THETA=0.0015;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26286563 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0192;AVGPOST=0.9997;RSQ=0.9934;ERATE=0.0003;THETA=0.0030;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 26286586 . TG T 62 PASS INDEL;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0034;AVGPOST=0.9964;RSQ=0.5716;ERATE=0.0010;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26286681 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.774;LDAF=0.0034;AVGPOST=0.9968;RSQ=0.6000;ERATE=0.0005;THETA=0.0019;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26286700 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0030;AVGPOST=0.9992;RSQ=0.8985;ERATE=0.0004;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26286742 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7222;ERATE=0.0007;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26286825 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.7999;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26286832 . TG T 49 PASS INDEL;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26286840 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2167;AVGPOST=0.9978;RSQ=0.9949;ERATE=0.0004;THETA=0.0005;AC=472;AN=2184 GT:DS:GL:BD 0.21611722 0 1 26286969 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26287080 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0148;AVGPOST=0.9997;RSQ=0.9911;ERATE=0.0003;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 26287212 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26287563 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.948;LDAF=0.7840;AVGPOST=0.9882;RSQ=0.9762;ERATE=0.0011;THETA=0.0006;AC=1720;AN=2184 GT:DS:GL:BD 0.78754580 1 1 26287567 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0040;AVGPOST=0.9951;RSQ=0.4860;ERATE=0.0016;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26287588 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0053;AVGPOST=0.9945;RSQ=0.6446;ERATE=0.0005;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26287672 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.751;LDAF=0.0068;AVGPOST=0.9949;RSQ=0.7356;ERATE=0.0006;THETA=0.0010;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26287846 . GC G 45 PASS INDEL;BAVGPOST=0.998;BRSQ=0.674;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.5214;ERATE=0.0008;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26287933 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6031;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26287966 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0019;AVGPOST=0.9994;RSQ=0.8556;ERATE=0.0006;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26288018 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0004;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26288098 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8057;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26288289 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0055;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0023;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26288335 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26288444 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26288483 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26288499 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26288523 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26288598 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26288673 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26288830 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26288854 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9259;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26289130 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.859;LDAF=0.0065;AVGPOST=0.9977;RSQ=0.8428;ERATE=0.0010;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26289212 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0102;AVGPOST=0.9995;RSQ=0.9808;ERATE=0.0003;THETA=0.0008;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26289215 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=0.9997;RSQ=0.9762;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26289262 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.7426;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26289266 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0031;AVGPOST=0.9980;RSQ=0.7144;ERATE=0.0008;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26289422 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.994;LDAF=0.5407;AVGPOST=0.9931;RSQ=0.9907;ERATE=0.0015;THETA=0.0008;AC=1179;AN=2184 GT:DS:GL:BD 0.53983516 1 1 26289447 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0017;AVGPOST=0.9996;RSQ=0.9129;ERATE=0.0004;THETA=0.0058;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26289465 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9990;RSQ=0.9204;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26289471 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.6360;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26289486 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26289555 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0101;AVGPOST=0.9997;RSQ=0.9862;ERATE=0.0003;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26289696 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9997;RSQ=0.9811;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26289704 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26289714 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9799;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26289955 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26289970 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0014;AVGPOST=0.9986;RSQ=0.6474;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26290012 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26290063 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4703;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26290087 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4485;ERATE=0.0003;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26290088 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.576;LDAF=0.0022;AVGPOST=0.9970;RSQ=0.4624;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26290120 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0036;AVGPOST=0.9992;RSQ=0.8990;ERATE=0.0004;THETA=0.0020;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26290169 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.973;LDAF=0.2038;AVGPOST=0.9876;RSQ=0.9704;ERATE=0.0034;THETA=0.0011;AC=441;AN=2184 GT:DS:GL:BD 0.20192307 0 1 26290183 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7335;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26290207 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8357;ERATE=0.0004;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26290281 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.774;LDAF=0.0089;AVGPOST=0.9942;RSQ=0.7590;ERATE=0.0005;THETA=0.0055;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26290294 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.958;BRSQ=0.833;LDAF=0.8544;AVGPOST=0.9454;RSQ=0.8339;ERATE=0.0133;THETA=0.0005;AC=1890;AN=2184 GT:DS:GL:BD 0.86538464 1 1 26290456 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.950;LDAF=0.0975;AVGPOST=0.9878;RSQ=0.9500;ERATE=0.0036;THETA=0.0040;AC=211;AN=2184 GT:DS:GL:BD 0.09661172 0 1 26290480 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.971;LDAF=0.1797;AVGPOST=0.9895;RSQ=0.9734;ERATE=0.0034;THETA=0.0003;AC=390;AN=2184 GT:DS:GL:BD 0.17857143 0 1 26290487 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0023;AVGPOST=0.9987;RSQ=0.7996;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26290573 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.871;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26290638 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26290693 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.924;LDAF=0.0186;AVGPOST=0.9957;RSQ=0.9212;ERATE=0.0005;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 26290694 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5711;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26290745 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9999;AVGPOST=0.9998;RSQ=0.0498;ERATE=0.0003;THETA=0.0014;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 26290823 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26290856 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8586;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26290887 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0077;AVGPOST=0.9990;RSQ=0.9558;ERATE=0.0004;THETA=0.0045;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26290907 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6311;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26290992 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0017;AVGPOST=0.9982;RSQ=0.6194;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26291031 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.885;LDAF=0.0071;AVGPOST=0.9976;RSQ=0.8698;ERATE=0.0005;THETA=0.0010;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26291065 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5602;AVGPOST=0.9964;RSQ=0.9956;ERATE=0.0004;THETA=0.0040;AC=1226;AN=2184 GT:DS:GL:BD 0.56135529 1 1 26291160 . AG A 70 PASS INDEL;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0069;AVGPOST=0.9966;RSQ=0.8051;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26291161 . G GAACAA 1779 PASS INDEL;BAVGPOST=0.998;BRSQ=0.879;LDAF=0.0103;AVGPOST=0.9940;RSQ=0.7633;ERATE=0.0006;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26291216 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5411;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26291261 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4609;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26291378 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.734;LDAF=0.0017;AVGPOST=0.9995;RSQ=0.8653;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26291662 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.816;LDAF=0.0056;AVGPOST=0.9968;RSQ=0.7939;ERATE=0.0004;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26291782 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5722;AVGPOST=0.9979;RSQ=0.9968;ERATE=0.0005;THETA=0.0004;AC=1251;AN=2184 GT:DS:GL:BD 0.57280219 1 1 26291793 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26291834 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.970;LDAF=0.0276;AVGPOST=0.9988;RSQ=0.9853;ERATE=0.0003;THETA=0.0008;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 26291853 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.828;LDAF=0.0062;AVGPOST=0.9981;RSQ=0.8902;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26292027 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0017;AVGPOST=0.9981;RSQ=0.5634;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26292044 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26292063 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.882;LDAF=0.0068;AVGPOST=0.9991;RSQ=0.9411;ERATE=0.0004;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26292172 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4031;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26292227 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.852;LDAF=0.0141;AVGPOST=0.9931;RSQ=0.8022;ERATE=0.0009;THETA=0.0012;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26292419 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.1578;AVGPOST=0.9978;RSQ=0.9930;ERATE=0.0006;THETA=0.0005;AC=345;AN=2184 GT:DS:GL:BD 0.15796703 0 1 26292501 . A AT 12471 PASS INDEL;BAVGPOST=0.927;BRSQ=0.901;LDAF=0.4954;AVGPOST=0.8956;RSQ=0.8802;ERATE=0.0125;THETA=0.0006;AC=1121;AN=2184 GT:DS:GL:BD 0.51327837 1 1 26292505 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.975;LDAF=0.5536;AVGPOST=0.9904;RSQ=0.9877;ERATE=0.0018;THETA=0.0009;AC=1216;AN=2184 GT:DS:GL:BD 0.55677658 1 1 26292570 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.7331;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26292588 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0111;AVGPOST=0.9993;RSQ=0.9742;ERATE=0.0004;THETA=0.0011;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26292597 . AG A 3143 PASS INDEL;BAVGPOST=0.822;BRSQ=0.744;LDAF=0.3515;AVGPOST=0.8283;RSQ=0.7591;ERATE=0.0075;THETA=0.0003;AC=793;AN=2184 GT:DS:GL:BD 0.36309522 0 1 26292755 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7676;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26292894 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9681;AVGPOST=0.9990;RSQ=0.9878;ERATE=0.0003;THETA=0.0009;AC=2115;AN=2184 GT:DS:GL:BD 0.96840662 1 1 26292916 . GA G 761 PASS INDEL;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9474;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26293012 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5725;AVGPOST=0.9987;RSQ=0.9980;ERATE=0.0005;THETA=0.0004;AC=1251;AN=2184 GT:DS:GL:BD 0.57280219 1 1 26293021 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0071;AVGPOST=0.9994;RSQ=0.9590;ERATE=0.0003;THETA=0.0023;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26293045 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8019;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26293087 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0083;AVGPOST=0.9999;RSQ=0.9947;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26293163 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0221;AVGPOST=0.9995;RSQ=0.9882;ERATE=0.0004;THETA=0.0008;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 26293241 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.727;LDAF=0.0022;AVGPOST=0.9987;RSQ=0.7458;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26293299 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5363;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26293301 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6150;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26293333 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.404;LDAF=0.0043;AVGPOST=0.9943;RSQ=0.4970;ERATE=0.0012;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26293373 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.5980;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26293374 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0144;AVGPOST=0.9969;RSQ=0.9117;ERATE=0.0005;THETA=0.0010;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 26293384 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.9653;AVGPOST=0.9952;RSQ=0.9430;ERATE=0.0007;THETA=0.0009;AC=2111;AN=2184 GT:DS:GL:BD 0.96657509 1 1 26293440 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.797;LDAF=0.0027;AVGPOST=0.9973;RSQ=0.5458;ERATE=0.0007;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26293502 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.454;LDAF=0.0056;AVGPOST=0.9926;RSQ=0.4742;ERATE=0.0011;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26293512 . G GA 149 PASS INDEL;BAVGPOST=0.998;BRSQ=0.795;LDAF=0.0068;AVGPOST=0.9934;RSQ=0.6332;ERATE=0.0004;THETA=0.0020;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26293550 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.8266;AVGPOST=0.9963;RSQ=0.9909;ERATE=0.0008;THETA=0.0004;AC=1807;AN=2184 GT:DS:GL:BD 0.82738096 1 1 26293782 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7085;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26293789 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26293790 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.925;LDAF=0.0123;AVGPOST=0.9982;RSQ=0.9463;ERATE=0.0004;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26293876 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26293976 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1588;AVGPOST=0.9984;RSQ=0.9952;ERATE=0.0005;THETA=0.0004;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 26294148 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26294238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0074;AVGPOST=0.9982;RSQ=0.9123;ERATE=0.0006;THETA=0.0043;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26294394 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0057;AVGPOST=0.9979;RSQ=0.8552;ERATE=0.0004;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26294432 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8990;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26294493 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.935;LDAF=0.0184;AVGPOST=0.9991;RSQ=0.9773;ERATE=0.0005;THETA=0.0015;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 26294582 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.983;LDAF=0.1578;AVGPOST=0.9977;RSQ=0.9933;ERATE=0.0004;THETA=0.0007;AC=344;AN=2184 GT:DS:GL:BD 0.15750916 0 1 26294655 . C CTAAA 1462 PASS INDEL;BAVGPOST=0.988;BRSQ=0.628;LDAF=0.0263;AVGPOST=0.9791;RSQ=0.6712;ERATE=0.0029;THETA=0.0003;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 26294737 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=1.0000;RSQ=0.9968;ERATE=0.0003;THETA=0.0015;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26294794 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0031;AVGPOST=0.9992;RSQ=0.8893;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26295055 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8498;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26295089 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5517;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26295173 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0130;AVGPOST=0.9994;RSQ=0.9823;ERATE=0.0003;THETA=0.0007;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26295366 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6784;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26295414 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9385;ERATE=0.0003;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26295609 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0023;AVGPOST=0.9997;RSQ=0.9448;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26295654 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26295770 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.5730;AVGPOST=0.9982;RSQ=0.9973;ERATE=0.0004;THETA=0.0010;AC=1251;AN=2184 GT:DS:GL:BD 0.57280219 1 1 26295866 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5854;ERATE=0.0005;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26295929 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26295970 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6537;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26296107 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.5199;ERATE=0.0004;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26296125 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26296170 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8368;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26296268 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0025;AVGPOST=0.9976;RSQ=0.6292;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26296289 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0047;AVGPOST=0.9974;RSQ=0.7515;ERATE=0.0006;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26296308 . CT C 171 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0028;AVGPOST=0.9973;RSQ=0.6578;ERATE=0.0012;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26296394 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7785;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26296445 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5441;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26296527 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0084;AVGPOST=0.9995;RSQ=0.9719;ERATE=0.0004;THETA=0.0009;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26296583 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26297004 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=1.0000;RSQ=0.9963;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26297038 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26297109 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0260;AVGPOST=0.9965;RSQ=0.9488;ERATE=0.0004;THETA=0.0026;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 26297180 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.779;LDAF=0.0020;AVGPOST=0.9985;RSQ=0.6715;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26297305 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.7189;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26297373 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5731;AVGPOST=0.9983;RSQ=0.9975;ERATE=0.0004;THETA=0.0006;AC=1252;AN=2184 GT:DS:GL:BD 0.57326007 1 1 26297418 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9997;RSQ=0.9887;ERATE=0.0003;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26297467 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9207;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26297469 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6550;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26297485 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0071;AVGPOST=0.9995;RSQ=0.9719;ERATE=0.0003;THETA=0.0010;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26297574 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6764;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26297780 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26297819 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9385;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26297909 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.5587;AVGPOST=0.9984;RSQ=0.9980;ERATE=0.0004;THETA=0.0014;AC=1220;AN=2184 GT:DS:GL:BD 0.55860806 1 1 26297933 . AG A 4824 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0291;AVGPOST=0.9990;RSQ=0.9850;ERATE=0.0004;THETA=0.0010;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 26297984 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1582;AVGPOST=0.9991;RSQ=0.9971;ERATE=0.0004;THETA=0.0004;AC=345;AN=2184 GT:DS:GL:BD 0.15796703 0 1 26298014 . G GA 32 PASS INDEL;BAVGPOST=0.991;BRSQ=0.461;LDAF=0.0144;AVGPOST=0.9811;RSQ=0.4892;ERATE=0.0052;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26298028 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26298054 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6409;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26298075 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8928;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26298146 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.7173;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26298180 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.9331;ERATE=0.0003;THETA=0.0023;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26298289 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26298314 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0017;AVGPOST=0.9995;RSQ=0.8942;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26298338 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26298351 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8681;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26298569 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5749;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26298682 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0148;AVGPOST=0.9997;RSQ=0.9909;ERATE=0.0004;THETA=0.0006;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 26299049 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26299050 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0105;AVGPOST=0.9997;RSQ=0.9881;ERATE=0.0005;THETA=0.0014;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26299146 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26299200 . AC A 113 PASS INDEL;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6383;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26299284 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26299409 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0022;AVGPOST=0.9997;RSQ=0.9477;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26299503 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26299732 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0019;AVGPOST=0.9973;RSQ=0.5364;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26299787 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6392;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26299985 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26300001 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9274;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26300081 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0152;AVGPOST=0.9979;RSQ=0.9397;ERATE=0.0005;THETA=0.0008;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 26300179 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.828;LDAF=0.0076;AVGPOST=0.9971;RSQ=0.8520;ERATE=0.0004;THETA=0.0017;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26300320 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8315;AVGPOST=0.9987;RSQ=0.9962;ERATE=0.0003;THETA=0.0040;AC=1817;AN=2184 GT:DS:GL:BD 0.83195972 1 1 26300329 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0107;AVGPOST=0.9995;RSQ=0.9811;ERATE=0.0004;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26300339 . TC T 66 PASS INDEL;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26300371 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0145;AVGPOST=0.9991;RSQ=0.9790;ERATE=0.0003;THETA=0.0007;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 26300417 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.679;LDAF=0.0150;AVGPOST=0.9820;RSQ=0.5425;ERATE=0.0053;THETA=0.0018;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26300510 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9481;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26300599 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26300787 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26300816 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26300911 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26300950 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26300951 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26300975 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26300976 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26301136 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26301170 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9999;RSQ=0.7187;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26301172 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0037;AVGPOST=1.0000;RSQ=0.9941;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26301196 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0072;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26301217 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26301326 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7227;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26301330 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9670;ERATE=0.0004;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26301415 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5826;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26301434 rs66479635 CATTT C 28590 PASS INDEL;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2300;AVGPOST=0.9968;RSQ=0.9937;ERATE=0.0004;THETA=0.0005;AC=501;AN=2184 GT:DS:GL:BD 0.22939560 0 1 26301491 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26301587 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0104;AVGPOST=0.9995;RSQ=0.9842;ERATE=0.0003;THETA=0.0011;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26301599 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0042;AVGPOST=0.9996;RSQ=0.9550;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26301699 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1981;AVGPOST=0.9988;RSQ=0.9969;ERATE=0.0004;THETA=0.0003;AC=432;AN=2184 GT:DS:GL:BD 0.19780220 0 1 26301727 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26301795 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0290;AVGPOST=0.9995;RSQ=0.9920;ERATE=0.0004;THETA=0.0006;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 26301837 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.917;LDAF=0.0214;AVGPOST=0.9965;RSQ=0.9342;ERATE=0.0006;THETA=0.0009;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 26301875 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4955;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26301904 rs112299425 T TA 643 PASS INDEL;BAVGPOST=0.969;BRSQ=0.572;LDAF=0.0505;AVGPOST=0.9453;RSQ=0.5489;ERATE=0.0158;THETA=0.0004;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 26301947 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.6650;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26301972 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0062;AVGPOST=0.9995;RSQ=0.9655;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26302020 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5790;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26302081 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.811;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.8458;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26302236 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8260;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26302287 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8843;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26302370 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0054;AVGPOST=0.9984;RSQ=0.8900;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26302382 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0035;AVGPOST=0.9986;RSQ=0.8270;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26302462 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0089;AVGPOST=0.9995;RSQ=0.9755;ERATE=0.0003;THETA=0.0032;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26302572 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26302573 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8495;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26302687 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26302707 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0199;AVGPOST=0.9987;RSQ=0.9740;ERATE=0.0003;THETA=0.0004;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 26302767 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8247;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26302924 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26302952 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0038;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26303130 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26303178 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26303228 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26303237 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9524;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26303245 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26303308 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26303550 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.982;LDAF=0.5540;AVGPOST=0.9713;RSQ=0.9641;ERATE=0.0029;THETA=0.0007;AC=1213;AN=2184 GT:DS:GL:BD 0.55540293 1 1 26303913 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.656;LDAF=0.0112;AVGPOST=0.9925;RSQ=0.7619;ERATE=0.0007;THETA=0.0012;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26303929 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5741;AVGPOST=0.9925;RSQ=0.9898;ERATE=0.0011;THETA=0.0011;AC=1254;AN=2184 GT:DS:GL:BD 0.57417583 1 1 26304014 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.755;LDAF=0.0059;AVGPOST=0.9953;RSQ=0.6792;ERATE=0.0005;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26304015 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.940;BRSQ=0.834;LDAF=0.1783;AVGPOST=0.9548;RSQ=0.8971;ERATE=0.0012;THETA=0.0007;AC=373;AN=2184 GT:DS:GL:BD 0.17078754 0 1 26304266 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5733;AVGPOST=0.9973;RSQ=0.9966;ERATE=0.0005;THETA=0.0010;AC=1252;AN=2184 GT:DS:GL:BD 0.57326007 1 1 26304287 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.5728;AVGPOST=0.9979;RSQ=0.9969;ERATE=0.0004;THETA=0.0005;AC=1252;AN=2184 GT:DS:GL:BD 0.57326007 1 1 26304317 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.6928;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26304542 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6520;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26304576 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26304634 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26304691 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5726;AVGPOST=0.9981;RSQ=0.9975;ERATE=0.0003;THETA=0.0003;AC=1251;AN=2184 GT:DS:GL:BD 0.57280219 1 1 26304693 . A AT 10285 PASS INDEL;BAVGPOST=0.911;BRSQ=0.875;LDAF=0.5165;AVGPOST=0.9065;RSQ=0.8811;ERATE=0.0123;THETA=0.0007;AC=1182;AN=2184 GT:DS:GL:BD 0.54120880 1 1 26304696 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5732;AVGPOST=0.9974;RSQ=0.9965;ERATE=0.0005;THETA=0.0012;AC=1253;AN=2184 GT:DS:GL:BD 0.57371795 1 1 26304791 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.911;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7442;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26304830 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4634;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26304949 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.982;LDAF=0.0914;AVGPOST=0.9933;RSQ=0.9697;ERATE=0.0006;THETA=0.0003;AC=196;AN=2184 GT:DS:GL:BD 0.08974359 0 1 26304999 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.2317;AVGPOST=0.9993;RSQ=0.9983;ERATE=0.0004;THETA=0.0003;AC=506;AN=2184 GT:DS:GL:BD 0.23168498 0 1 26305225 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5730;AVGPOST=0.9990;RSQ=0.9985;ERATE=0.0004;THETA=0.0004;AC=1252;AN=2184 GT:DS:GL:BD 0.57326007 1 1 26305329 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6902;ERATE=0.0004;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26305339 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7109;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26305496 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.895;LDAF=0.0088;AVGPOST=0.9980;RSQ=0.9068;ERATE=0.0006;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26305548 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0023;AVGPOST=0.9987;RSQ=0.7599;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26305563 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1994;AVGPOST=0.9980;RSQ=0.9950;ERATE=0.0005;THETA=0.0003;AC=435;AN=2184 GT:DS:GL:BD 0.19917582 0 1 26305569 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5672;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26305570 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2322;AVGPOST=0.9987;RSQ=0.9971;ERATE=0.0003;THETA=0.0004;AC=507;AN=2184 GT:DS:GL:BD 0.23214285 0 1 26305664 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26305708 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.7404;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26305807 . TGCC T 22872 PASS INDEL;BAVGPOST=0.936;BRSQ=0.895;LDAF=0.5321;AVGPOST=0.9298;RSQ=0.9067;ERATE=0.0146;THETA=0.0005;AC=1190;AN=2184 GT:DS:GL:BD 0.54487181 1 1 26305884 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0020;AVGPOST=0.9980;RSQ=0.6303;ERATE=0.0005;THETA=0.0022;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26305922 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6288;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26305933 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.8268;AVGPOST=0.9990;RSQ=0.9973;ERATE=0.0004;THETA=0.0004;AC=1806;AN=2184 GT:DS:GL:BD 0.82692307 1 1 26305937 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.843;LDAF=0.0045;AVGPOST=0.9982;RSQ=0.8404;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26305938 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26305954 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5551;AVGPOST=0.9953;RSQ=0.9939;ERATE=0.0009;THETA=0.0006;AC=1214;AN=2184 GT:DS:GL:BD 0.55586082 1 1 26306047 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.810;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26306081 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.5734;AVGPOST=0.9970;RSQ=0.9953;ERATE=0.0009;THETA=0.0004;AC=1254;AN=2184 GT:DS:GL:BD 0.57417583 1 1 26306132 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.744;LDAF=0.0033;AVGPOST=0.9980;RSQ=0.7286;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26306169 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.924;LDAF=0.0180;AVGPOST=0.9967;RSQ=0.9167;ERATE=0.0009;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 26306224 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.481;LDAF=0.0105;AVGPOST=0.9906;RSQ=0.6471;ERATE=0.0007;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26306260 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.534;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.3322;ERATE=0.0007;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26306325 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0106;AVGPOST=0.9998;RSQ=0.9904;ERATE=0.0003;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26306334 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0191;AVGPOST=0.9993;RSQ=0.9827;ERATE=0.0005;THETA=0.0006;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 26306337 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0012;AVGPOST=0.9983;RSQ=0.3579;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26306446 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5614;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26306701 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1011;AVGPOST=0.9968;RSQ=0.9875;ERATE=0.0004;THETA=0.0009;AC=217;AN=2184 GT:DS:GL:BD 0.09935898 0 1 26306743 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5878;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26306807 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0151;AVGPOST=0.9973;RSQ=0.9263;ERATE=0.0006;THETA=0.0018;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 26306817 rs113114314 TAA T 73 PASS INDEL;BAVGPOST=0.999;BRSQ=0.811;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.5485;ERATE=0.0009;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26306876 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.975;LDAF=0.5577;AVGPOST=0.9940;RSQ=0.9920;ERATE=0.0009;THETA=0.0011;AC=1221;AN=2184 GT:DS:GL:BD 0.55906594 1 1 26306906 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.962;LDAF=0.5696;AVGPOST=0.9830;RSQ=0.9759;ERATE=0.0016;THETA=0.0007;AC=1257;AN=2184 GT:DS:GL:BD 0.57554942 1 1 26307077 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.659;LDAF=0.0082;AVGPOST=0.9910;RSQ=0.5770;ERATE=0.0008;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26307083 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.959;BRSQ=0.938;LDAF=0.5642;AVGPOST=0.9612;RSQ=0.9486;ERATE=0.0044;THETA=0.0010;AC=1243;AN=2184 GT:DS:GL:BD 0.56913918 1 1 26307104 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.825;BRSQ=0.576;LDAF=0.7268;AVGPOST=0.7574;RSQ=0.5134;ERATE=0.0707;THETA=0.0005;AC=1729;AN=2184 GT:DS:GL:BD 0.79166669 1 1 26307105 . TA T 137 PASS INDEL;BAVGPOST=0.986;BRSQ=0.356;LDAF=0.0358;AVGPOST=0.9420;RSQ=0.3494;ERATE=0.0050;THETA=0.0008;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26307272 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.690;LDAF=0.0029;AVGPOST=0.9965;RSQ=0.4804;ERATE=0.0007;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26307315 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.992;LDAF=0.5711;AVGPOST=0.9934;RSQ=0.9912;ERATE=0.0006;THETA=0.0005;AC=1251;AN=2184 GT:DS:GL:BD 0.57280219 1 1 26307376 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.658;LDAF=0.0052;AVGPOST=0.9950;RSQ=0.5784;ERATE=0.0012;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26307711 rs66965832 TA T 34672 PASS INDEL;BAVGPOST=0.979;BRSQ=0.966;LDAF=0.5823;AVGPOST=0.9895;RSQ=0.9861;ERATE=0.0015;THETA=0.0005;AC=1273;AN=2184 GT:DS:GL:BD 0.58287543 1 1 26307731 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.916;LDAF=0.0120;AVGPOST=0.9969;RSQ=0.8976;ERATE=0.0006;THETA=0.0007;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26307836 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5409;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26308071 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0152;AVGPOST=0.9997;RSQ=0.9910;ERATE=0.0003;THETA=0.0007;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26308074 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7219;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26308106 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26308161 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7658;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26308263 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.721;LDAF=0.0185;AVGPOST=0.9872;RSQ=0.7528;ERATE=0.0005;THETA=0.0007;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26308575 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0071;AVGPOST=0.9995;RSQ=0.9724;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26308856 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26308941 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26308958 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26308986 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.861;LDAF=0.0472;AVGPOST=0.9846;RSQ=0.8694;ERATE=0.0324;THETA=0.0005;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 26309020 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0188;AVGPOST=1.0000;RSQ=0.9989;ERATE=0.0003;THETA=0.0006;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 26309034 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26309051 . GAATGCACA G 450 PASS INDEL;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.5842;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26309097 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26309146 . G GCCTAA 759 PASS INDEL;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0032;AVGPOST=0.9972;RSQ=0.5985;ERATE=0.0007;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26309164 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26309193 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5756;AVGPOST=0.9993;RSQ=0.9989;ERATE=0.0004;THETA=0.0008;AC=1257;AN=2184 GT:DS:GL:BD 0.57554942 1 1 26309286 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6710;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26309451 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.5575;AVGPOST=0.9972;RSQ=0.9962;ERATE=0.0007;THETA=0.0007;AC=1220;AN=2184 GT:DS:GL:BD 0.55860806 1 1 26309481 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.958;LDAF=0.5478;AVGPOST=0.9869;RSQ=0.9838;ERATE=0.0004;THETA=0.0007;AC=1203;AN=2184 GT:DS:GL:BD 0.55082417 1 1 26309629 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8325;AVGPOST=0.9991;RSQ=0.9974;ERATE=0.0004;THETA=0.0003;AC=1819;AN=2184 GT:DS:GL:BD 0.83287543 1 1 26309700 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.976;LDAF=0.0902;AVGPOST=0.9903;RSQ=0.9577;ERATE=0.0004;THETA=0.0004;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 26309720 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26309825 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0191;AVGPOST=0.9993;RSQ=0.9832;ERATE=0.0004;THETA=0.0009;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 26309937 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5756;AVGPOST=0.9993;RSQ=0.9988;ERATE=0.0005;THETA=0.0013;AC=1258;AN=2184 GT:DS:GL:BD 0.57600731 1 1 26309953 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26309985 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7466;ERATE=0.0005;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26310040 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.949;LDAF=0.5518;AVGPOST=0.9660;RSQ=0.9575;ERATE=0.0028;THETA=0.0007;AC=1227;AN=2184 GT:DS:GL:BD 0.56181318 1 1 26310042 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.719;LDAF=0.0019;AVGPOST=0.9975;RSQ=0.4479;ERATE=0.0006;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26310047 . C CA 1300 PASS INDEL;BAVGPOST=0.755;BRSQ=0.314;LDAF=0.2269;AVGPOST=0.7633;RSQ=0.4671;ERATE=0.0269;THETA=0.0004;AC=334;AN=2184 GT:DS:GL:BD 0.15293041 0 1 26310064 rs35777678 AC A 32453 PASS INDEL;BAVGPOST=0.980;BRSQ=0.968;LDAF=0.5667;AVGPOST=0.9770;RSQ=0.9717;ERATE=0.0029;THETA=0.0006;AC=1245;AN=2184 GT:DS:GL:BD 0.57005495 1 1 26310139 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26310159 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6295;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26310213 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5586;AVGPOST=0.9996;RSQ=0.9994;ERATE=0.0003;THETA=0.0010;AC=1220;AN=2184 GT:DS:GL:BD 0.55860806 1 1 26310239 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0037;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26310299 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26310388 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8063;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26310394 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.5703;AVGPOST=0.9965;RSQ=0.9954;ERATE=0.0005;THETA=0.0017;AC=1248;AN=2184 GT:DS:GL:BD 0.57142860 1 1 26310438 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0032;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26310441 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26310469 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26310477 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26310485 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26310555 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26310622 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26310836 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5732;AVGPOST=0.9998;RSQ=0.9997;ERATE=0.0003;THETA=0.0019;AC=1252;AN=2184 GT:DS:GL:BD 0.57326007 1 1 26310970 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26311069 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9882;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26311132 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26311158 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26311242 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26311408 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.5726;AVGPOST=0.9981;RSQ=0.9971;ERATE=0.0005;THETA=0.0010;AC=1252;AN=2184 GT:DS:GL:BD 0.57326007 1 1 26311515 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0202;AVGPOST=0.9972;RSQ=0.9431;ERATE=0.0009;THETA=0.0011;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 26311637 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.680;LDAF=0.0035;AVGPOST=0.9955;RSQ=0.4742;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26311684 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26311815 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.972;LDAF=0.0285;AVGPOST=0.9985;RSQ=0.9811;ERATE=0.0003;THETA=0.0004;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 26311828 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9609;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26311930 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0003;AVGPOST=0.9994;RSQ=0.4163;ERATE=0.0004;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26311957 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8345;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26311978 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.997;LDAF=0.5760;AVGPOST=0.9979;RSQ=0.9971;ERATE=0.0009;THETA=0.0006;AC=1258;AN=2184 GT:DS:GL:BD 0.57600731 1 1 26312342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7128;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26312496 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.874;LDAF=0.0143;AVGPOST=0.9955;RSQ=0.8774;ERATE=0.0013;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 26313025 . A AT 128 PASS INDEL;BAVGPOST=0.985;BRSQ=0.534;LDAF=0.0275;AVGPOST=0.9650;RSQ=0.4743;ERATE=0.0101;THETA=0.0010;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 26313102 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.757;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4756;ERATE=0.0006;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26313108 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.714;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3794;ERATE=0.0006;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26313179 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0109;AVGPOST=0.9985;RSQ=0.9429;ERATE=0.0004;THETA=0.0002;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26313271 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0096;AVGPOST=0.9979;RSQ=0.9113;ERATE=0.0005;THETA=0.0009;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26313423 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.866;LDAF=0.0072;AVGPOST=0.9977;RSQ=0.8646;ERATE=0.0004;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26313462 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0063;AVGPOST=0.9924;RSQ=0.5665;ERATE=0.0006;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26313535 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5367;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26313552 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0066;AVGPOST=0.9987;RSQ=0.9252;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26313703 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.581;LDAF=0.0088;AVGPOST=0.9899;RSQ=0.5534;ERATE=0.0008;THETA=0.0013;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26313708 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.983;LDAF=0.5717;AVGPOST=0.9946;RSQ=0.9924;ERATE=0.0011;THETA=0.0003;AC=1252;AN=2184 GT:DS:GL:BD 0.57326007 1 1 26313887 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26313941 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.739;LDAF=0.0038;AVGPOST=0.9987;RSQ=0.8764;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26313945 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0023;AVGPOST=0.9986;RSQ=0.7459;ERATE=0.0005;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26314010 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.893;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7923;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26314029 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5291;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26314250 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0086;AVGPOST=0.9983;RSQ=0.9207;ERATE=0.0005;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26314405 . T TC 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4787;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26314411 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5724;AVGPOST=0.9992;RSQ=0.9989;ERATE=0.0003;THETA=0.0003;AC=1251;AN=2184 GT:DS:GL:BD 0.57280219 1 1 26314564 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8318;AVGPOST=0.9998;RSQ=0.9994;ERATE=0.0003;THETA=0.0002;AC=1817;AN=2184 GT:DS:GL:BD 0.83195972 1 1 26314566 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26314625 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0999;AVGPOST=0.9991;RSQ=0.9965;ERATE=0.0003;THETA=0.0006;AC=218;AN=2184 GT:DS:GL:BD 0.09981685 0 1 26314689 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26314703 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9875;ERATE=0.0003;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26314758 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26314788 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26314810 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9795;ERATE=0.0009;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26314829 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26314839 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9362;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26314934 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.670;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26315123 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9426;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26315137 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0052;AVGPOST=0.9945;RSQ=0.6058;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26315139 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.668;LDAF=0.0026;AVGPOST=0.9978;RSQ=0.6464;ERATE=0.0007;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26315163 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.722;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.5400;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26315187 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.958;LDAF=0.5621;AVGPOST=0.9792;RSQ=0.9736;ERATE=0.0017;THETA=0.0005;AC=1240;AN=2184 GT:DS:GL:BD 0.56776559 1 1 26315384 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8840;ERATE=0.0004;THETA=0.0031;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26315501 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5938;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26315516 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26315520 . ATCTT A 25 PASS INDEL;BAVGPOST=0.999;BRSQ=0.691;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5951;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26315575 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6386;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26315604 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26315913 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26315943 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26315961 . G GC 133 PASS INDEL;BAVGPOST=0.999;BRSQ=0.700;LDAF=0.0125;AVGPOST=0.9841;RSQ=0.5241;ERATE=0.0014;THETA=0.0008;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26316096 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26316178 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0053;AVGPOST=0.9994;RSQ=0.9581;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26316294 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9225;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26316337 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26316376 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5136;ERATE=0.0005;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26316385 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.7581;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26316437 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0136;AVGPOST=0.9993;RSQ=0.9750;ERATE=0.0004;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26316631 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0151;AVGPOST=0.9995;RSQ=0.9847;ERATE=0.0004;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26316722 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0003;THETA=0.0036;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26316815 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.735;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6872;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26316861 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26316900 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7121;ERATE=0.0005;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26316918 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0105;AVGPOST=0.9999;RSQ=0.9961;ERATE=0.0003;THETA=0.0009;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26316948 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0024;AVGPOST=0.9984;RSQ=0.7594;ERATE=0.0006;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26316974 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0142;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 26316978 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0038;AVGPOST=0.9995;RSQ=0.9484;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26316983 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26317129 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26317173 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26317177 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26317266 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26317270 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26317303 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26317316 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26317383 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2317;AVGPOST=1.0000;RSQ=0.9999;ERATE=0.0003;THETA=0.0004;AC=506;AN=2184 GT:DS:GL:BD 0.23168498 0 1 26317407 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26317474 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0110;AVGPOST=1.0000;RSQ=0.9981;ERATE=0.0003;THETA=0.0009;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26317698 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1013;AVGPOST=0.9983;RSQ=0.9926;ERATE=0.0004;THETA=0.0022;AC=220;AN=2184 GT:DS:GL:BD 0.10073260 0 1 26317731 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9854;ERATE=0.0003;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26317736 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0107;AVGPOST=0.9994;RSQ=0.9762;ERATE=0.0003;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26317740 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9612;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26317761 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.853;LDAF=0.0061;AVGPOST=0.9998;RSQ=0.9819;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26317780 . C CT 66 PASS INDEL;BAVGPOST=0.983;BRSQ=0.418;LDAF=0.0274;AVGPOST=0.9676;RSQ=0.5185;ERATE=0.0067;THETA=0.0004;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26317811 . T TGCTA 527 PASS INDEL;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.5087;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26317963 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.512;LDAF=0.0020;AVGPOST=0.9969;RSQ=0.3936;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26317964 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0093;AVGPOST=0.9968;RSQ=0.8507;ERATE=0.0006;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26317971 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.878;LDAF=0.0085;AVGPOST=0.9957;RSQ=0.8220;ERATE=0.0005;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26318064 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.291;LDAF=0.0019;AVGPOST=0.9963;RSQ=0.1223;ERATE=0.0011;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26318121 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.937;LDAF=0.5582;AVGPOST=0.9371;RSQ=0.9139;ERATE=0.0075;THETA=0.0022;AC=1231;AN=2184 GT:DS:GL:BD 0.56364471 1 1 26318250 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.708;LDAF=0.0040;AVGPOST=0.9973;RSQ=0.7132;ERATE=0.0006;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26318491 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9355;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26318564 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5723;AVGPOST=0.9978;RSQ=0.9970;ERATE=0.0004;THETA=0.0008;AC=1251;AN=2184 GT:DS:GL:BD 0.57280219 1 1 26318586 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.826;LDAF=0.0050;AVGPOST=0.9988;RSQ=0.8891;ERATE=0.0010;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26318595 . GA G 618 PASS INDEL;BAVGPOST=0.877;BRSQ=0.369;LDAF=0.1309;AVGPOST=0.8512;RSQ=0.5178;ERATE=0.0088;THETA=0.0006;AC=195;AN=2184 GT:DS:GL:BD 0.08928572 0 1 26318596 rs34273468 AT A 50348 PASS INDEL;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5697;AVGPOST=0.9933;RSQ=0.9908;ERATE=0.0015;THETA=0.0009;AC=1246;AN=2184 GT:DS:GL:BD 0.57051283 1 1 26318810 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4237;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26318832 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9858;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26318853 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.710;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5817;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26319140 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9288;ERATE=0.0007;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26319169 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7694;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26319384 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6426;ERATE=0.0005;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26319386 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0004;AVGPOST=0.9997;RSQ=0.6813;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26319814 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26319835 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.5595;AVGPOST=0.9983;RSQ=0.9974;ERATE=0.0005;THETA=0.0003;AC=1222;AN=2184 GT:DS:GL:BD 0.55952382 1 1 26319846 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26319863 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8194;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26319913 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0192;AVGPOST=0.9998;RSQ=0.9946;ERATE=0.0003;THETA=0.0007;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 26319921 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26319959 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8084;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26319960 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7662;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26320246 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.9739;AVGPOST=0.9981;RSQ=0.9750;ERATE=0.0004;THETA=0.0004;AC=2127;AN=2184 GT:DS:GL:BD 0.97390109 1 1 26320420 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26320447 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0030;AVGPOST=0.9985;RSQ=0.8178;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26320478 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.921;LDAF=0.0138;AVGPOST=0.9977;RSQ=0.9394;ERATE=0.0004;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26320509 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9997;RSQ=0.9885;ERATE=0.0003;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26320558 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6746;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26320668 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.960;LDAF=0.0398;AVGPOST=0.9996;RSQ=0.9952;ERATE=0.0003;THETA=0.0003;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 26320681 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.735;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7286;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26320750 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0023;AVGPOST=0.9973;RSQ=0.5540;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26320781 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26320784 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0007;AVGPOST=0.9992;RSQ=0.4631;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26320836 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5646;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26320893 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0017;AVGPOST=0.9981;RSQ=0.6263;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26320899 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5716;AVGPOST=0.9973;RSQ=0.9959;ERATE=0.0005;THETA=0.0007;AC=1250;AN=2184 GT:DS:GL:BD 0.57234430 1 1 26320914 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5572;AVGPOST=0.9971;RSQ=0.9958;ERATE=0.0003;THETA=0.0005;AC=1218;AN=2184 GT:DS:GL:BD 0.55769229 1 1 26320963 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26321288 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8538;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26321307 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26321336 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5624;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26321517 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0018;AVGPOST=0.9995;RSQ=0.8761;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26321540 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26321628 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6902;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26321871 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9351;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26322081 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.971;LDAF=0.0528;AVGPOST=0.9953;RSQ=0.9681;ERATE=0.0003;THETA=0.0007;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 26322104 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0191;AVGPOST=0.9995;RSQ=0.9885;ERATE=0.0004;THETA=0.0005;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 26322166 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6161;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26322427 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5931;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26322572 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0399;AVGPOST=0.9991;RSQ=0.9896;ERATE=0.0004;THETA=0.0003;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 26322625 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.727;LDAF=0.0047;AVGPOST=0.9961;RSQ=0.6748;ERATE=0.0005;THETA=0.0017;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26322783 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0053;AVGPOST=0.9994;RSQ=0.9434;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26323022 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0065;AVGPOST=0.9985;RSQ=0.8910;ERATE=0.0006;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26323081 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.942;LDAF=0.5449;AVGPOST=0.9800;RSQ=0.9745;ERATE=0.0014;THETA=0.0004;AC=1199;AN=2184 GT:DS:GL:BD 0.54899269 1 1 26323120 . G GA 61 PASS INDEL;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26323132 . C CA 54 PASS INDEL;BAVGPOST=0.990;BRSQ=0.547;LDAF=0.0187;AVGPOST=0.9758;RSQ=0.4779;ERATE=0.0050;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26323275 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6386;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26323310 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.913;LDAF=0.0085;AVGPOST=0.9979;RSQ=0.9168;ERATE=0.0005;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26323370 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2191;AVGPOST=0.9981;RSQ=0.9955;ERATE=0.0005;THETA=0.0005;AC=479;AN=2184 GT:DS:GL:BD 0.21932234 0 1 26323426 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9998;RSQ=0.9904;ERATE=0.0003;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26323478 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.647;LDAF=0.0028;AVGPOST=0.9984;RSQ=0.7813;ERATE=0.0005;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26323499 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0037;AVGPOST=0.9995;RSQ=0.9447;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26323513 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4853;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26323521 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0036;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26323626 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0019;AVGPOST=0.9982;RSQ=0.6834;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26323663 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8511;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26323703 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.4734;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26323913 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0129;AVGPOST=0.9998;RSQ=0.9931;ERATE=0.0003;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26324032 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0081;AVGPOST=0.9990;RSQ=0.9549;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26324108 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.940;LDAF=0.5462;AVGPOST=0.9551;RSQ=0.9443;ERATE=0.0072;THETA=0.0002;AC=1212;AN=2184 GT:DS:GL:BD 0.55494505 1 1 26324342 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5179;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26324447 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0056;AVGPOST=0.9995;RSQ=0.9578;ERATE=0.0004;THETA=0.0013;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26324449 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7477;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26324472 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.880;LDAF=0.0072;AVGPOST=0.9984;RSQ=0.9018;ERATE=0.0005;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26324490 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7282;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26324520 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.5577;AVGPOST=0.9985;RSQ=0.9978;ERATE=0.0004;THETA=0.0008;AC=1218;AN=2184 GT:DS:GL:BD 0.55769229 1 1 26324545 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.647;LDAF=0.0025;AVGPOST=0.9968;RSQ=0.4735;ERATE=0.0008;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26324579 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0078;AVGPOST=0.9989;RSQ=0.9516;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26324582 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.9980;AVGPOST=0.9978;RSQ=0.5775;ERATE=0.0004;THETA=0.0008;AC=2182;AN=2184 GT:DS:GL:BD 0.99908423 1 1 26324667 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26324707 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0126;AVGPOST=0.9986;RSQ=0.9593;ERATE=0.0004;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26324840 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.923;LDAF=0.0180;AVGPOST=0.9985;RSQ=0.9663;ERATE=0.0004;THETA=0.0015;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 26324850 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.443;LDAF=0.0028;AVGPOST=0.9963;RSQ=0.4355;ERATE=0.0013;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26324858 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.717;LDAF=0.0042;AVGPOST=0.9947;RSQ=0.4864;ERATE=0.0024;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26324866 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0021;AVGPOST=0.9983;RSQ=0.6750;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26324876 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0048;AVGPOST=0.9948;RSQ=0.6413;ERATE=0.0005;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26324924 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.896;LDAF=0.9908;AVGPOST=0.9986;RSQ=0.9433;ERATE=0.0003;THETA=0.0007;AC=2165;AN=2184 GT:DS:GL:BD 0.99130034 1 1 26325032 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26325394 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.737;LDAF=0.0006;AVGPOST=0.9992;RSQ=0.4530;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26325398 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.633;LDAF=0.0014;AVGPOST=0.9994;RSQ=0.8098;ERATE=0.0004;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26325416 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8350;ERATE=0.0003;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26325552 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26325689 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0146;AVGPOST=0.9940;RSQ=0.8581;ERATE=0.0006;THETA=0.0007;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26325707 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0197;AVGPOST=0.9867;RSQ=0.7527;ERATE=0.0009;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 26325753 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8116;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26325811 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0233;AVGPOST=0.9998;RSQ=0.9966;ERATE=0.0003;THETA=0.0006;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 26325878 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6250;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26325881 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26325972 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0031;AVGPOST=0.9972;RSQ=0.6657;ERATE=0.0004;THETA=0.0019;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26325994 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26326263 . GGC G 68 PASS INDEL;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4900;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26326488 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.687;LDAF=0.0022;AVGPOST=0.9990;RSQ=0.8359;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26326618 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0239;AVGPOST=0.9990;RSQ=0.9824;ERATE=0.0005;THETA=0.0003;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 26326821 . T TG 253 PASS INDEL;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26326841 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7102;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26326933 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.871;LDAF=0.0383;AVGPOST=0.9929;RSQ=0.9177;ERATE=0.0005;THETA=0.0005;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 26327026 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9750;AVGPOST=0.9992;RSQ=0.9866;ERATE=0.0004;THETA=0.0003;AC=2130;AN=2184 GT:DS:GL:BD 0.97527474 1 1 26327060 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6798;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26327096 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0071;AVGPOST=0.9981;RSQ=0.8919;ERATE=0.0004;THETA=0.0014;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26327109 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8251;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26327300 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5119;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26327500 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6150;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26327536 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0135;AVGPOST=0.9985;RSQ=0.9610;ERATE=0.0004;THETA=0.0006;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26327548 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=0.9999;RSQ=0.9893;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26327569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26327671 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5566;AVGPOST=0.9980;RSQ=0.9972;ERATE=0.0004;THETA=0.0008;AC=1216;AN=2184 GT:DS:GL:BD 0.55677658 1 1 26327751 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.8205;AVGPOST=0.9978;RSQ=0.9953;ERATE=0.0004;THETA=0.0003;AC=1792;AN=2184 GT:DS:GL:BD 0.82051283 1 1 26327776 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0055;AVGPOST=0.9995;RSQ=0.9583;ERATE=0.0004;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26327825 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5559;AVGPOST=0.9973;RSQ=0.9962;ERATE=0.0007;THETA=0.0006;AC=1216;AN=2184 GT:DS:GL:BD 0.55677658 1 1 26327984 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5692;ERATE=0.0004;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26328011 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.809;LDAF=0.0080;AVGPOST=0.9964;RSQ=0.8355;ERATE=0.0009;THETA=0.0034;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26328035 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26328101 . C CA 888 PASS INDEL;BAVGPOST=0.958;BRSQ=0.545;LDAF=0.0820;AVGPOST=0.9052;RSQ=0.4695;ERATE=0.0251;THETA=0.0006;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 26328317 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0018;AVGPOST=0.9994;RSQ=0.8632;ERATE=0.0003;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26328350 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.954;LDAF=0.0192;AVGPOST=0.9998;RSQ=0.9945;ERATE=0.0003;THETA=0.0006;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 26328514 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0107;AVGPOST=0.9985;RSQ=0.9536;ERATE=0.0004;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26328564 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.729;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.3695;ERATE=0.0008;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26328760 . CAG C 513 PASS INDEL;BAVGPOST=0.997;BRSQ=0.730;LDAF=0.0053;AVGPOST=0.9969;RSQ=0.7533;ERATE=0.0005;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26328831 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5809;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26329063 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8311;AVGPOST=0.9976;RSQ=0.9934;ERATE=0.0006;THETA=0.0006;AC=1815;AN=2184 GT:DS:GL:BD 0.83104396 1 1 26329149 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0103;AVGPOST=0.9995;RSQ=0.9765;ERATE=0.0003;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26329150 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5574;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26329529 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0021;AVGPOST=0.9983;RSQ=0.6441;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26329592 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26329703 . TAAAC T 84 PASS INDEL;BAVGPOST=1.000;BRSQ=0.675;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4755;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26329724 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5826;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26329746 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26329850 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6490;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26329863 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.893;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9298;ERATE=0.0004;THETA=0.0014;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26329954 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0029;AVGPOST=0.9983;RSQ=0.7312;ERATE=0.0006;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26330104 . TGAAG T 4517 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0146;AVGPOST=0.9991;RSQ=0.9741;ERATE=0.0004;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 26330354 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26330491 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7547;ERATE=0.0009;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26330546 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0151;AVGPOST=0.9997;RSQ=0.9898;ERATE=0.0004;THETA=0.0005;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26330585 rs71004556 T TTCTTTCTTTC 117642 PASS INDEL;BAVGPOST=0.945;BRSQ=0.894;LDAF=0.7305;AVGPOST=0.9156;RSQ=0.8602;ERATE=0.0172;THETA=0.0005;AC=1653;AN=2184 GT:DS:GL:BD 0.75686812 1 1 26330636 . TTCTC T 2016 PASS INDEL;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0196;AVGPOST=0.9988;RSQ=0.9707;ERATE=0.0006;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 26330685 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.899;LDAF=0.0151;AVGPOST=0.9888;RSQ=0.7140;ERATE=0.0013;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26330848 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6252;ERATE=0.0004;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26330924 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2287;AVGPOST=0.9939;RSQ=0.9867;ERATE=0.0006;THETA=0.0010;AC=501;AN=2184 GT:DS:GL:BD 0.22939560 0 1 26330927 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5600;AVGPOST=0.9958;RSQ=0.9944;ERATE=0.0004;THETA=0.0005;AC=1224;AN=2184 GT:DS:GL:BD 0.56043959 1 1 26331004 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0066;AVGPOST=0.9986;RSQ=0.9002;ERATE=0.0005;THETA=0.0021;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26331011 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9739;AVGPOST=0.9969;RSQ=0.9572;ERATE=0.0005;THETA=0.0016;AC=2130;AN=2184 GT:DS:GL:BD 0.97527474 1 1 26331074 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.710;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5298;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26331208 rs61469337 ATTT A 3141 PASS INDEL;BAVGPOST=0.901;BRSQ=0.739;LDAF=0.2327;AVGPOST=0.8930;RSQ=0.7777;ERATE=0.0090;THETA=0.0006;AC=473;AN=2184 GT:DS:GL:BD 0.21657509 0 1 26331220 rs61469337 TATAC T 947 PASS INDEL;BAVGPOST=0.777;BRSQ=0.374;LDAF=0.2238;AVGPOST=0.7461;RSQ=0.4386;ERATE=0.0224;THETA=0.0007;AC=304;AN=2184 GT:DS:GL:BD 0.13919415 0 1 26331224 rs61469337 C CAT 466 PASS INDEL;BAVGPOST=0.388;BRSQ=0.028;LDAF=0.5360;AVGPOST=0.7282;RSQ=0.5650;ERATE=0.0026;THETA=0.0010;AC=1226;AN=2184 GT:DS:GL:BD 0.56135529 1 1 26331248 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.934;BRSQ=0.137;LDAF=0.0981;AVGPOST=0.8495;RSQ=0.3338;ERATE=0.0069;THETA=0.0006;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 26331250 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.189;LDAF=0.1098;AVGPOST=0.8228;RSQ=0.2688;ERATE=0.0120;THETA=0.0006;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 26331252 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.959;BRSQ=0.300;LDAF=0.1293;AVGPOST=0.8308;RSQ=0.4397;ERATE=0.0085;THETA=0.0006;AC=198;AN=2184 GT:DS:GL:BD 0.09065934 0 1 26331697 . AGGTTCG A 762 PASS INDEL;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0032;AVGPOST=0.9992;RSQ=0.8848;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26331992 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7707;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26332003 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5992;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26332229 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0049;AVGPOST=0.9994;RSQ=0.9391;ERATE=0.0005;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26332321 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6328;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26332465 . AT A 5607 PASS INDEL;BAVGPOST=0.853;BRSQ=0.753;LDAF=0.4447;AVGPOST=0.8276;RSQ=0.7623;ERATE=0.0220;THETA=0.0003;AC=1023;AN=2184 GT:DS:GL:BD 0.46840659 0 1 26332466 rs67752060 TG T 47149 PASS INDEL;BAVGPOST=0.991;BRSQ=0.985;LDAF=0.5825;AVGPOST=0.9893;RSQ=0.9851;ERATE=0.0015;THETA=0.0008;AC=1276;AN=2184 GT:DS:GL:BD 0.58424908 1 1 26332470 . GT G 7170 PASS INDEL;BAVGPOST=0.871;BRSQ=0.785;LDAF=0.4611;AVGPOST=0.8500;RSQ=0.7886;ERATE=0.0182;THETA=0.0004;AC=1070;AN=2184 GT:DS:GL:BD 0.48992673 0 1 26332671 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.1011;AVGPOST=0.9969;RSQ=0.9859;ERATE=0.0005;THETA=0.0005;AC=218;AN=2184 GT:DS:GL:BD 0.09981685 0 1 26333025 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.973;LDAF=0.2119;AVGPOST=0.9943;RSQ=0.9855;ERATE=0.0008;THETA=0.0007;AC=461;AN=2184 GT:DS:GL:BD 0.21108058 0 1 26333051 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0144;AVGPOST=0.9994;RSQ=0.9801;ERATE=0.0004;THETA=0.0010;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 26333109 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9233;ERATE=0.0004;THETA=0.0047;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26333195 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0392;AVGPOST=0.9989;RSQ=0.9896;ERATE=0.0005;THETA=0.0006;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 26333283 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26333291 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26333292 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0050;AVGPOST=0.9991;RSQ=0.9214;ERATE=0.0004;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26333431 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0060;AVGPOST=0.9995;RSQ=0.9628;ERATE=0.0003;THETA=0.0011;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26333511 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.6267;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26333707 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0075;AVGPOST=0.9988;RSQ=0.9403;ERATE=0.0004;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26333759 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6200;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26333786 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5650;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26333790 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6933;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26333828 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0036;AVGPOST=0.9988;RSQ=0.8573;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26333855 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0030;AVGPOST=0.9977;RSQ=0.6680;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26333904 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26334024 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0064;AVGPOST=0.9988;RSQ=0.9109;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26334071 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.720;LDAF=0.0024;AVGPOST=0.9971;RSQ=0.4718;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26334086 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0120;AVGPOST=0.9965;RSQ=0.8737;ERATE=0.0004;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26334184 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.982;LDAF=0.3668;AVGPOST=0.9718;RSQ=0.9569;ERATE=0.0062;THETA=0.0007;AC=799;AN=2184 GT:DS:GL:BD 0.36584249 0 1 26334211 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.741;LDAF=0.0084;AVGPOST=0.9946;RSQ=0.7147;ERATE=0.0008;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26334257 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8431;ERATE=0.0004;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26334498 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2272;AVGPOST=0.9990;RSQ=0.9976;ERATE=0.0004;THETA=0.0004;AC=496;AN=2184 GT:DS:GL:BD 0.22710623 0 1 26334709 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26334810 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0025;AVGPOST=0.9965;RSQ=0.4829;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26334887 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5279;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26334909 . A ATAATAC 1423 PASS INDEL;BAVGPOST=0.990;BRSQ=0.792;LDAF=0.0239;AVGPOST=0.9831;RSQ=0.7095;ERATE=0.0007;THETA=0.0009;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 26334933 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.547;LDAF=0.0016;AVGPOST=0.9982;RSQ=0.5165;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26334971 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.687;LDAF=0.0033;AVGPOST=0.9977;RSQ=0.7096;ERATE=0.0005;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26334978 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2268;AVGPOST=0.9971;RSQ=0.9928;ERATE=0.0008;THETA=0.0004;AC=494;AN=2184 GT:DS:GL:BD 0.22619048 0 1 26335005 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.779;LDAF=0.0106;AVGPOST=0.9958;RSQ=0.8421;ERATE=0.0007;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26335167 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.733;LDAF=0.0038;AVGPOST=0.9948;RSQ=0.5550;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26335232 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6744;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26335235 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0031;AVGPOST=0.9980;RSQ=0.7418;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26335236 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.972;LDAF=0.0296;AVGPOST=0.9977;RSQ=0.9662;ERATE=0.0004;THETA=0.0030;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 26335310 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0065;AVGPOST=0.9985;RSQ=0.9001;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26335311 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.967;LDAF=0.5502;AVGPOST=0.9778;RSQ=0.9725;ERATE=0.0034;THETA=0.0012;AC=1210;AN=2184 GT:DS:GL:BD 0.55402929 1 1 26335344 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0129;AVGPOST=0.9996;RSQ=0.9864;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26335450 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0103;AVGPOST=0.9995;RSQ=0.9802;ERATE=0.0004;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26335698 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5571;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26335929 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2282;AVGPOST=0.9947;RSQ=0.9893;ERATE=0.0005;THETA=0.0011;AC=497;AN=2184 GT:DS:GL:BD 0.22756410 0 1 26335986 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.605;LDAF=0.0023;AVGPOST=0.9970;RSQ=0.4465;ERATE=0.0005;THETA=0.0040;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26336132 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.316;LDAF=0.0343;AVGPOST=0.9457;RSQ=0.3465;ERATE=0.0067;THETA=0.0009;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26336163 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0138;AVGPOST=0.9979;RSQ=0.9290;ERATE=0.0007;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26336217 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0135;AVGPOST=0.9960;RSQ=0.8882;ERATE=0.0005;THETA=0.0068;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26336222 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.886;LDAF=0.0228;AVGPOST=0.9930;RSQ=0.8776;ERATE=0.0004;THETA=0.0040;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 26336451 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4760;ERATE=0.0004;THETA=0.0047;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26336545 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0300;AVGPOST=0.9993;RSQ=0.9904;ERATE=0.0004;THETA=0.0012;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 26336569 . CAA C 166 PASS INDEL;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7324;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26336670 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6820;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26336702 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0109;AVGPOST=0.9990;RSQ=0.9639;ERATE=0.0004;THETA=0.0077;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26336777 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0004;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26336812 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9753;AVGPOST=0.9992;RSQ=0.9856;ERATE=0.0004;THETA=0.0006;AC=2130;AN=2184 GT:DS:GL:BD 0.97527474 1 1 26336867 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9676;ERATE=0.0003;THETA=0.0016;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26336873 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7459;ERATE=0.0004;THETA=0.0032;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26336907 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.902;LDAF=0.0500;AVGPOST=0.9904;RSQ=0.9320;ERATE=0.0004;THETA=0.0018;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 26337000 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0059;AVGPOST=0.9985;RSQ=0.8847;ERATE=0.0004;THETA=0.0069;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26337034 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.848;LDAF=0.0032;AVGPOST=0.9971;RSQ=0.6354;ERATE=0.0006;THETA=0.0124;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26337095 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.772;LDAF=0.0194;AVGPOST=0.9896;RSQ=0.7966;ERATE=0.0006;THETA=0.0008;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 26337157 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0058;AVGPOST=0.9985;RSQ=0.8960;ERATE=0.0004;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26337176 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26337365 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.935;LDAF=0.0068;AVGPOST=0.9991;RSQ=0.9452;ERATE=0.0003;THETA=0.0064;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26337492 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9183;ERATE=0.0004;THETA=0.0029;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26337561 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6208;ERATE=0.0004;THETA=0.0062;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26337658 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.969;LDAF=0.0344;AVGPOST=0.9968;RSQ=0.9623;ERATE=0.0003;THETA=0.0065;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 26337800 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0195;AVGPOST=0.9992;RSQ=0.9797;ERATE=0.0004;THETA=0.0009;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 26337967 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0024;AVGPOST=0.9981;RSQ=0.7383;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26337974 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8136;ERATE=0.0003;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26338068 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0016;AVGPOST=0.9983;RSQ=0.5987;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26338164 . G GT 339 PASS INDEL;BAVGPOST=0.965;BRSQ=0.478;LDAF=0.0771;AVGPOST=0.8980;RSQ=0.4126;ERATE=0.0220;THETA=0.0040;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 26338165 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.774;LDAF=0.0155;AVGPOST=0.9876;RSQ=0.7013;ERATE=0.0014;THETA=0.0028;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26338183 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.940;LDAF=0.1888;AVGPOST=0.9755;RSQ=0.9396;ERATE=0.0006;THETA=0.0031;AC=404;AN=2184 GT:DS:GL:BD 0.18498169 0 1 26338250 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.651;LDAF=0.0014;AVGPOST=0.9979;RSQ=0.3367;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26338305 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.872;LDAF=0.1561;AVGPOST=0.9671;RSQ=0.9062;ERATE=0.0017;THETA=0.0007;AC=329;AN=2184 GT:DS:GL:BD 0.15064102 0 1 26338335 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6268;ERATE=0.0005;THETA=0.0052;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26338351 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.762;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4217;ERATE=0.0006;THETA=0.0162;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26338380 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0020;AVGPOST=0.9968;RSQ=0.3609;ERATE=0.0008;THETA=0.0061;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26338449 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.584;LDAF=0.0063;AVGPOST=0.9910;RSQ=0.3995;ERATE=0.0008;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26338504 rs58581034 GC G 18123 PASS INDEL;BAVGPOST=0.996;BRSQ=0.919;LDAF=0.9555;AVGPOST=0.9644;RSQ=0.6742;ERATE=0.0039;THETA=0.0039;AC=2115;AN=2184 GT:DS:GL:BD 0.96840662 1 1 26338613 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.869;LDAF=0.0173;AVGPOST=0.9963;RSQ=0.9185;ERATE=0.0004;THETA=0.0064;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 26338631 . GT G 90 PASS INDEL;BAVGPOST=1.000;BRSQ=0.749;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4298;ERATE=0.0005;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26338656 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.798;LDAF=0.0041;AVGPOST=0.9973;RSQ=0.7200;ERATE=0.0019;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26338658 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26338773 rs72121894 CTTCT C 48733 PASS INDEL;BAVGPOST=0.931;BRSQ=0.669;LDAF=0.8536;AVGPOST=0.8785;RSQ=0.6187;ERATE=0.0215;THETA=0.0008;AC=1944;AN=2184 GT:DS:GL:BD 0.89010990 1 1 26338796 rs56714846 CTTTT C 9095 PASS INDEL;BAVGPOST=0.972;BRSQ=0.927;LDAF=0.2268;AVGPOST=0.9246;RSQ=0.8399;ERATE=0.0078;THETA=0.0016;AC=450;AN=2184 GT:DS:GL:BD 0.20604396 0 1 26338850 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0059;AVGPOST=0.9973;RSQ=0.8070;ERATE=0.0007;THETA=0.0057;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26338865 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.659;LDAF=0.0043;AVGPOST=0.9969;RSQ=0.6842;ERATE=0.0006;THETA=0.0019;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26338945 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0148;AVGPOST=0.9940;RSQ=0.8368;ERATE=0.0005;THETA=0.0013;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26338946 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0048;AVGPOST=0.9950;RSQ=0.5952;ERATE=0.0005;THETA=0.0045;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26338993 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.633;LDAF=0.0181;AVGPOST=0.9821;RSQ=0.5947;ERATE=0.0045;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26339056 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.9754;AVGPOST=0.9932;RSQ=0.8938;ERATE=0.0009;THETA=0.0034;AC=2135;AN=2184 GT:DS:GL:BD 0.97756410 1 1 26339087 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8683;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26339168 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8467;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26339184 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0004;THETA=0.0149;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26339486 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0004;THETA=0.0047;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26339564 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26339613 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0354;AVGPOST=0.9993;RSQ=0.9912;ERATE=0.0003;THETA=0.0032;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 26339663 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.667;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7153;ERATE=0.0004;THETA=0.0031;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26339738 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0027;AVGPOST=0.9977;RSQ=0.6799;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26339820 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7455;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26339903 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.995;LDAF=0.5937;AVGPOST=0.9932;RSQ=0.9904;ERATE=0.0005;THETA=0.0004;AC=1295;AN=2184 GT:DS:GL:BD 0.59294873 1 1 26339929 . TCC T 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.751;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4323;ERATE=0.0006;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26340132 rs74331144 ATATATGTT A 81439 PASS INDEL;BAVGPOST=0.904;BRSQ=0.843;LDAF=0.6500;AVGPOST=0.8664;RSQ=0.8109;ERATE=0.0205;THETA=0.0009;AC=1383;AN=2184 GT:DS:GL:BD 0.63324177 1 1 26340175 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7368;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26340240 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0184;AVGPOST=0.9954;RSQ=0.8954;ERATE=0.0006;THETA=0.0039;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 26340248 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0152;AVGPOST=0.9985;RSQ=0.9532;ERATE=0.0007;THETA=0.0005;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 26340274 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.520;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5459;ERATE=0.0008;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26340317 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.809;LDAF=0.0185;AVGPOST=0.9919;RSQ=0.8126;ERATE=0.0007;THETA=0.0028;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 26340472 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26340509 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9549;ERATE=0.0004;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26340764 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5268;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26341097 . CAT C 886 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0077;AVGPOST=0.9994;RSQ=0.9642;ERATE=0.0004;THETA=0.0010;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26341266 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7096;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26341297 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1061;AVGPOST=0.9995;RSQ=0.9974;ERATE=0.0004;THETA=0.0005;AC=231;AN=2184 GT:DS:GL:BD 0.10576923 0 1 26341377 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1042;AVGPOST=0.9988;RSQ=0.9949;ERATE=0.0004;THETA=0.0002;AC=227;AN=2184 GT:DS:GL:BD 0.10393773 0 1 26341378 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0056;AVGPOST=0.9947;RSQ=0.6530;ERATE=0.0015;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26341477 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.741;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5348;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26341603 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0142;AVGPOST=0.9989;RSQ=0.9670;ERATE=0.0005;THETA=0.0009;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 26341627 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0149;AVGPOST=0.9991;RSQ=0.9718;ERATE=0.0003;THETA=0.0007;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 26341968 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4583;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26342062 . A ACG 114 PASS INDEL;BAVGPOST=0.999;BRSQ=0.754;LDAF=0.0037;AVGPOST=0.9980;RSQ=0.7976;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26342281 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0188;AVGPOST=0.9998;RSQ=0.9944;ERATE=0.0003;THETA=0.0006;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 26342447 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.747;LDAF=0.0054;AVGPOST=0.9963;RSQ=0.7203;ERATE=0.0005;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26342644 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1081;AVGPOST=0.9988;RSQ=0.9947;ERATE=0.0005;THETA=0.0006;AC=235;AN=2184 GT:DS:GL:BD 0.10760073 0 1 26342647 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0764;AVGPOST=0.9989;RSQ=0.9929;ERATE=0.0004;THETA=0.0008;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 26342650 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0210;AVGPOST=0.9990;RSQ=0.9803;ERATE=0.0005;THETA=0.0007;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 26342701 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0021;AVGPOST=0.9980;RSQ=0.6990;ERATE=0.0005;THETA=0.0024;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26342703 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.758;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5142;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26342922 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4728;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26343003 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.772;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7390;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26343063 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6025;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26343079 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0499;AVGPOST=0.9983;RSQ=0.9866;ERATE=0.0005;THETA=0.0013;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 26343112 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8786;AVGPOST=0.9981;RSQ=0.9930;ERATE=0.0004;THETA=0.0006;AC=1920;AN=2184 GT:DS:GL:BD 0.87912089 1 1 26343143 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26343217 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26343275 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0080;AVGPOST=0.9993;RSQ=0.9627;ERATE=0.0004;THETA=0.0019;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26343286 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0054;AVGPOST=0.9981;RSQ=0.8717;ERATE=0.0004;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26343334 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6140;ERATE=0.0007;THETA=0.0053;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26343363 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0755;AVGPOST=0.9996;RSQ=0.9977;ERATE=0.0003;THETA=0.0007;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 26343392 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.956;LDAF=0.0205;AVGPOST=0.9997;RSQ=0.9940;ERATE=0.0003;THETA=0.0006;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 26343637 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26343754 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5188;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26343783 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6830;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26343852 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9982;RSQ=0.8441;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26343910 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.984;LDAF=0.1901;AVGPOST=0.9898;RSQ=0.9765;ERATE=0.0007;THETA=0.0004;AC=413;AN=2184 GT:DS:GL:BD 0.18910256 0 1 26343981 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8838;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26344004 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26344037 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7682;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26344048 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26344080 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0096;AVGPOST=0.9999;RSQ=0.9958;ERATE=0.0003;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26344095 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0079;AVGPOST=0.9992;RSQ=0.9587;ERATE=0.0003;THETA=0.0011;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26344126 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0024;AVGPOST=0.9993;RSQ=0.8625;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26344243 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.687;LDAF=0.0021;AVGPOST=0.9990;RSQ=0.7874;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26344375 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8715;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26344477 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8817;AVGPOST=0.9978;RSQ=0.9917;ERATE=0.0004;THETA=0.0004;AC=1927;AN=2184 GT:DS:GL:BD 0.88232601 1 1 26344572 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0071;AVGPOST=0.9967;RSQ=0.8341;ERATE=0.0004;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26344609 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0027;AVGPOST=0.9979;RSQ=0.6673;ERATE=0.0006;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26344803 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0482;AVGPOST=0.9980;RSQ=0.9857;ERATE=0.0004;THETA=0.0006;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 26344811 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.978;LDAF=0.0356;AVGPOST=0.9984;RSQ=0.9807;ERATE=0.0005;THETA=0.0002;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 26344899 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5959;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26344939 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8790;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26345027 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1211;AVGPOST=0.9990;RSQ=0.9961;ERATE=0.0003;THETA=0.0005;AC=264;AN=2184 GT:DS:GL:BD 0.12087912 0 1 26345097 . AC A 5 PASS INDEL;BAVGPOST=0.999;BRSQ=0.660;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6833;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26345237 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.917;LDAF=0.0023;AVGPOST=0.9987;RSQ=0.8055;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26345330 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0080;AVGPOST=0.9994;RSQ=0.9678;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26345401 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5775;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26345479 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7745;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26345492 . G GT 118 PASS INDEL;BAVGPOST=0.999;BRSQ=0.524;LDAF=0.0016;AVGPOST=0.9976;RSQ=0.3794;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26345537 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1056;AVGPOST=0.9974;RSQ=0.9896;ERATE=0.0006;THETA=0.0002;AC=229;AN=2184 GT:DS:GL:BD 0.10485348 0 1 26345655 . AC A 218 PASS INDEL;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0054;AVGPOST=0.9983;RSQ=0.8646;ERATE=0.0005;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26345658 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0056;AVGPOST=0.9932;RSQ=0.5923;ERATE=0.0005;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26345662 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0037;AVGPOST=0.9977;RSQ=0.7237;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26345880 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.600;LDAF=0.0024;AVGPOST=0.9961;RSQ=0.2818;ERATE=0.0008;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26345935 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.526;LDAF=0.0109;AVGPOST=0.9926;RSQ=0.7307;ERATE=0.0007;THETA=0.0009;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26346058 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.717;LDAF=0.0022;AVGPOST=0.9976;RSQ=0.5685;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26346098 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6418;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26346152 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9987;RSQ=0.8278;ERATE=0.0005;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26346256 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0143;AVGPOST=0.9995;RSQ=0.9819;ERATE=0.0004;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 26346284 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5951;AVGPOST=0.9989;RSQ=0.9982;ERATE=0.0004;THETA=0.0006;AC=1300;AN=2184 GT:DS:GL:BD 0.59523809 1 1 26346525 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.849;LDAF=0.0050;AVGPOST=0.9991;RSQ=0.9280;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26346549 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1210;AVGPOST=0.9993;RSQ=0.9972;ERATE=0.0004;THETA=0.0003;AC=264;AN=2184 GT:DS:GL:BD 0.12087912 0 1 26346572 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7893;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26346829 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0083;AVGPOST=0.9998;RSQ=0.9868;ERATE=0.0004;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26346855 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7843;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26346961 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26347082 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1206;AVGPOST=0.9990;RSQ=0.9959;ERATE=0.0010;THETA=0.0005;AC=262;AN=2184 GT:DS:GL:BD 0.11996337 0 1 26347167 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0107;AVGPOST=0.9994;RSQ=0.9739;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26347266 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5084;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26347440 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1210;AVGPOST=0.9991;RSQ=0.9965;ERATE=0.0004;THETA=0.0003;AC=264;AN=2184 GT:DS:GL:BD 0.12087912 0 1 26347782 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.790;LDAF=0.0037;AVGPOST=0.9968;RSQ=0.6789;ERATE=0.0019;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26347915 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0138;AVGPOST=0.9998;RSQ=0.9929;ERATE=0.0003;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 26347922 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0189;AVGPOST=0.9997;RSQ=0.9920;ERATE=0.0004;THETA=0.0005;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 26347930 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5542;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26347985 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9890;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26348049 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.968;LDAF=0.2046;AVGPOST=0.9864;RSQ=0.9696;ERATE=0.0004;THETA=0.0004;AC=442;AN=2184 GT:DS:GL:BD 0.20238096 0 1 26348154 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9178;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26348230 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0761;AVGPOST=0.9985;RSQ=0.9928;ERATE=0.0004;THETA=0.0003;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 26348344 . GT G 245 PASS INDEL;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0051;AVGPOST=0.9971;RSQ=0.7598;ERATE=0.0006;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26348423 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1074;AVGPOST=0.9971;RSQ=0.9881;ERATE=0.0007;THETA=0.0006;AC=233;AN=2184 GT:DS:GL:BD 0.10668498 0 1 26348424 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0072;AVGPOST=0.9954;RSQ=0.7530;ERATE=0.0008;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26348474 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.8967;AVGPOST=0.9949;RSQ=0.9770;ERATE=0.0008;THETA=0.0004;AC=1963;AN=2184 GT:DS:GL:BD 0.89880955 1 1 26348617 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.735;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.3945;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26348750 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.758;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4332;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26348773 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0123;AVGPOST=0.9965;RSQ=0.8825;ERATE=0.0006;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26348806 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0037;AVGPOST=0.9955;RSQ=0.5165;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26348826 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0023;AVGPOST=0.9988;RSQ=0.7803;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26349011 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=1.0000;RSQ=0.9957;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26349062 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26349076 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26349108 . G GC 2248 PASS INDEL;BAVGPOST=0.991;BRSQ=0.962;LDAF=0.1195;AVGPOST=0.9957;RSQ=0.9834;ERATE=0.0005;THETA=0.0003;AC=262;AN=2184 GT:DS:GL:BD 0.11996337 0 1 26349109 rs78022960 C CT 13836 PASS INDEL;BAVGPOST=0.989;BRSQ=0.958;LDAF=0.1249;AVGPOST=0.9901;RSQ=0.9656;ERATE=0.0009;THETA=0.0002;AC=269;AN=2184 GT:DS:GL:BD 0.12316850 0 1 26349146 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26349220 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26349245 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0471;AVGPOST=0.9986;RSQ=0.9885;ERATE=0.0004;THETA=0.0011;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 26349342 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26349373 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26349374 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0035;AVGPOST=0.9996;RSQ=0.9682;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26349417 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26349532 . GCCT G 36 PASS INDEL;BAVGPOST=0.996;BRSQ=0.566;LDAF=0.0068;AVGPOST=0.9914;RSQ=0.4907;ERATE=0.0016;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26349625 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0681;AVGPOST=1.0000;RSQ=0.9997;ERATE=0.0003;THETA=0.0006;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 26349701 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0009;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26349708 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26349754 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.910;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9524;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26349886 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0187;AVGPOST=0.9998;RSQ=0.9944;ERATE=0.0003;THETA=0.0004;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 26349888 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26349920 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8136;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26349947 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26349967 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.5952;AVGPOST=0.9986;RSQ=0.9979;ERATE=0.0004;THETA=0.0004;AC=1299;AN=2184 GT:DS:GL:BD 0.59478021 1 1 26350229 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5122;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26350247 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.9300;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26350287 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0129;AVGPOST=0.9977;RSQ=0.9257;ERATE=0.0005;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26350526 . CAAAG C 2507 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0144;AVGPOST=0.9981;RSQ=0.9416;ERATE=0.0006;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 26350547 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0148;AVGPOST=0.9990;RSQ=0.9740;ERATE=0.0003;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26350688 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7163;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26350713 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0034;AVGPOST=0.9970;RSQ=0.6637;ERATE=0.0004;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26350888 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0188;AVGPOST=0.9999;RSQ=0.9966;ERATE=0.0003;THETA=0.0003;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 26351103 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.593;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4699;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26351146 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0020;AVGPOST=0.9983;RSQ=0.6576;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26351251 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5736;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26351373 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.649;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26351380 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5883;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26351380 . CTTT C 42 PASS INDEL;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26351382 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.980;LDAF=0.1947;AVGPOST=0.9888;RSQ=0.9750;ERATE=0.0006;THETA=0.0004;AC=424;AN=2184 GT:DS:GL:BD 0.19413920 0 1 26351393 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7721;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26351472 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1037;AVGPOST=0.9981;RSQ=0.9922;ERATE=0.0004;THETA=0.0014;AC=226;AN=2184 GT:DS:GL:BD 0.10347985 0 1 26351588 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0151;AVGPOST=0.9985;RSQ=0.9574;ERATE=0.0004;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 26351775 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0054;AVGPOST=0.9992;RSQ=0.9345;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26351799 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0013;AVGPOST=0.9997;RSQ=0.8989;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26351854 . TAA T 3220 PASS INDEL;BAVGPOST=0.992;BRSQ=0.807;LDAF=0.0225;AVGPOST=0.9905;RSQ=0.8163;ERATE=0.0007;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 26351882 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7386;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26351915 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0413;AVGPOST=0.9996;RSQ=0.9958;ERATE=0.0003;THETA=0.0005;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 26352004 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.7164;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26352233 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.719;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26352300 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0032;AVGPOST=0.9979;RSQ=0.7527;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26352383 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6252;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26352479 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.726;LDAF=0.0060;AVGPOST=0.9969;RSQ=0.8143;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26352566 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0021;AVGPOST=0.9974;RSQ=0.5438;ERATE=0.0005;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26352781 rs61087238 G GA 10652 PASS INDEL;BAVGPOST=0.970;BRSQ=0.931;LDAF=0.2601;AVGPOST=0.9183;RSQ=0.8441;ERATE=0.0129;THETA=0.0005;AC=529;AN=2184 GT:DS:GL:BD 0.24221611 0 1 26352834 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0044;AVGPOST=0.9978;RSQ=0.7935;ERATE=0.0005;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26352863 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.693;LDAF=0.0021;AVGPOST=0.9968;RSQ=0.3374;ERATE=0.0008;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26353367 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0720;AVGPOST=0.9993;RSQ=0.9964;ERATE=0.0003;THETA=0.0005;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 26353429 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8363;AVGPOST=0.9988;RSQ=0.9962;ERATE=0.0004;THETA=0.0004;AC=1826;AN=2184 GT:DS:GL:BD 0.83608061 1 1 26353467 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.9098;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26353640 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0026;AVGPOST=0.9977;RSQ=0.6684;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26354032 . T TC 168 PASS INDEL;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0035;AVGPOST=0.9983;RSQ=0.8028;ERATE=0.0004;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26354036 . A AT 26 PASS INDEL;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8144;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26354040 . T TC 83 PASS INDEL;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0029;AVGPOST=0.9988;RSQ=0.8161;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26354056 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0754;AVGPOST=0.9997;RSQ=0.9983;ERATE=0.0003;THETA=0.0009;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 26354120 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.873;LDAF=0.0206;AVGPOST=0.9943;RSQ=0.8897;ERATE=0.0007;THETA=0.0005;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 26354131 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0357;AVGPOST=0.9986;RSQ=0.9842;ERATE=0.0004;THETA=0.0004;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 26354145 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.982;LDAF=0.0684;AVGPOST=0.9989;RSQ=0.9925;ERATE=0.0006;THETA=0.0007;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 26354149 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0354;AVGPOST=0.9989;RSQ=0.9856;ERATE=0.0005;THETA=0.0005;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 26354206 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0682;AVGPOST=0.9985;RSQ=0.9916;ERATE=0.0003;THETA=0.0007;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 26354276 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0042;AVGPOST=0.9994;RSQ=0.9346;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26354279 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.987;LDAF=0.2090;AVGPOST=0.9966;RSQ=0.9910;ERATE=0.0005;THETA=0.0006;AC=456;AN=2184 GT:DS:GL:BD 0.20879121 0 1 26354399 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0020;AVGPOST=0.9985;RSQ=0.6714;ERATE=0.0006;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26354460 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0106;AVGPOST=0.9998;RSQ=0.9919;ERATE=0.0003;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26354578 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6193;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26354660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7687;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26354715 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.714;LDAF=0.0049;AVGPOST=0.9968;RSQ=0.7305;ERATE=0.0007;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26354743 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.8955;AVGPOST=0.9987;RSQ=0.9941;ERATE=0.0003;THETA=0.0010;AC=1956;AN=2184 GT:DS:GL:BD 0.89560437 1 1 26354913 . C CG 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.744;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4839;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26355001 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.538;LDAF=0.0019;AVGPOST=0.9985;RSQ=0.6462;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26355120 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.629;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5166;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26355152 . GA G 844 PASS INDEL;BAVGPOST=0.913;BRSQ=0.677;LDAF=0.1525;AVGPOST=0.9279;RSQ=0.7884;ERATE=0.0019;THETA=0.0006;AC=330;AN=2184 GT:DS:GL:BD 0.15109891 0 1 26355229 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.487;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6010;ERATE=0.0005;THETA=0.0049;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26355271 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.791;LDAF=0.0172;AVGPOST=0.9890;RSQ=0.7562;ERATE=0.0007;THETA=0.0007;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 26355297 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0046;AVGPOST=0.9995;RSQ=0.9520;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26355329 . GT G 48 PASS INDEL;BAVGPOST=1.000;BRSQ=0.741;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5157;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26355350 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0560;AVGPOST=0.9971;RSQ=0.9803;ERATE=0.0004;THETA=0.0007;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 26355475 . AG A 112 PASS INDEL;BAVGPOST=0.999;BRSQ=0.725;LDAF=0.0021;AVGPOST=0.9973;RSQ=0.4179;ERATE=0.0010;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26355535 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8541;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26355691 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9524;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26355692 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26355706 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26355739 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=1.0000;RSQ=0.9970;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26355740 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0036;AVGPOST=0.9999;RSQ=0.9885;ERATE=0.0003;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26355756 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9076;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26355757 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26355822 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26356145 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26356190 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26356261 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26356381 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9048;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26356436 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4943;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26356632 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26356698 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.6997;ERATE=0.0012;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26356781 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8286;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26356875 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26356877 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0739;AVGPOST=0.9990;RSQ=0.9941;ERATE=0.0008;THETA=0.0004;AC=161;AN=2184 GT:DS:GL:BD 0.07371795 0 1 26356906 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26357008 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26357154 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0142;AVGPOST=0.9999;RSQ=0.9969;ERATE=0.0003;THETA=0.0058;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 26357161 . GC G 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4728;ERATE=0.0007;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26357162 . C CCA 27 PASS INDEL;BAVGPOST=1.000;BRSQ=0.743;LDAF=0.0022;AVGPOST=0.9966;RSQ=0.4973;ERATE=0.0004;THETA=0.0049;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26357186 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9562;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26357187 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8136;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26357204 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26357340 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7418;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26357426 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0078;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26357589 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9359;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26357635 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26357656 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6137;AVGPOST=0.9995;RSQ=0.9992;ERATE=0.0003;THETA=0.0005;AC=1339;AN=2184 GT:DS:GL:BD 0.61309522 1 1 26357667 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1739;AVGPOST=0.9995;RSQ=0.9987;ERATE=0.0003;THETA=0.0006;AC=380;AN=2184 GT:DS:GL:BD 0.17399268 0 1 26357677 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26357796 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26357826 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.8291;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26357855 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.9755;AVGPOST=0.9989;RSQ=0.9871;ERATE=0.0003;THETA=0.0006;AC=2130;AN=2184 GT:DS:GL:BD 0.97527474 1 1 26357873 . C CG 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8283;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26358020 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26358202 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0722;AVGPOST=0.9997;RSQ=0.9979;ERATE=0.0004;THETA=0.0006;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 26358214 . A AT 286 PASS INDEL;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0027;AVGPOST=0.9972;RSQ=0.6644;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26358270 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7143;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26358332 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.708;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7640;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26358462 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7143;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26358537 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.880;LDAF=0.0087;AVGPOST=0.9977;RSQ=0.8895;ERATE=0.0004;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26358752 rs5773143 T TA 108611 PASS INDEL;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.8934;AVGPOST=0.9936;RSQ=0.9738;ERATE=0.0012;THETA=0.0006;AC=1954;AN=2184 GT:DS:GL:BD 0.89468867 1 1 26358873 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26358950 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26359118 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0056;AVGPOST=0.9997;RSQ=0.9778;ERATE=0.0003;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26359120 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26359205 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0921;AVGPOST=0.9991;RSQ=0.9961;ERATE=0.0004;THETA=0.0005;AC=201;AN=2184 GT:DS:GL:BD 0.09203297 0 1 26359222 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0921;AVGPOST=0.9995;RSQ=0.9980;ERATE=0.0003;THETA=0.0006;AC=201;AN=2184 GT:DS:GL:BD 0.09203297 0 1 26359246 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8929;AVGPOST=0.9995;RSQ=0.9974;ERATE=0.0004;THETA=0.0003;AC=1950;AN=2184 GT:DS:GL:BD 0.89285713 1 1 26359308 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0040;AVGPOST=0.9992;RSQ=0.9102;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26359336 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26359338 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8577;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26359486 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0043;AVGPOST=0.9986;RSQ=0.9023;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26359662 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9594;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26359729 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26359894 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0723;AVGPOST=0.9999;RSQ=0.9991;ERATE=0.0003;THETA=0.0012;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 26360067 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26360069 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26360306 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26360334 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26360353 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26360356 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26360376 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0035;AVGPOST=0.9997;RSQ=0.9114;ERATE=0.0003;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26360391 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=1.0000;RSQ=0.9957;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26360416 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0934;AVGPOST=0.9996;RSQ=0.9986;ERATE=0.0003;THETA=0.0004;AC=204;AN=2184 GT:DS:GL:BD 0.09340660 0 1 26360422 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0008;AVGPOST=0.9999;RSQ=0.9255;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26360496 . TCTC T 355 PASS INDEL;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0049;AVGPOST=0.9975;RSQ=0.8203;ERATE=0.0005;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26360525 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0036;AVGPOST=0.9994;RSQ=0.9070;ERATE=0.0006;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26360845 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26360902 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26361215 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0105;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0051;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26361286 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26361353 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26361422 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26361438 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0017;AVGPOST=0.9997;RSQ=0.9375;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26361448 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26361467 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6964;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26361522 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8540;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26361549 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.913;LDAF=0.0198;AVGPOST=0.9943;RSQ=0.8947;ERATE=0.0040;THETA=0.0006;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 26361648 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26361669 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0030;AVGPOST=0.9988;RSQ=0.8406;ERATE=0.0005;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26361670 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0030;AVGPOST=0.9987;RSQ=0.8359;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26361688 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4770;ERATE=0.0006;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26361848 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0037;AVGPOST=0.9996;RSQ=0.9534;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26361849 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8338;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26361850 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26361906 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7272;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26361927 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0072;AVGPOST=0.9994;RSQ=0.9590;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26362000 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6008;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26362001 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1050;AVGPOST=0.9980;RSQ=0.9923;ERATE=0.0003;THETA=0.0007;AC=229;AN=2184 GT:DS:GL:BD 0.10485348 0 1 26362069 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.5762;ERATE=0.0007;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26362194 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.993;LDAF=0.7270;AVGPOST=0.9910;RSQ=0.9836;ERATE=0.0010;THETA=0.0003;AC=1589;AN=2184 GT:DS:GL:BD 0.72756410 1 1 26362219 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.906;LDAF=0.0171;AVGPOST=0.9924;RSQ=0.8041;ERATE=0.0013;THETA=0.0004;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26362291 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.616;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.3591;ERATE=0.0007;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26362396 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.585;LDAF=0.0042;AVGPOST=0.9950;RSQ=0.4821;ERATE=0.0006;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26362735 . TGAA T 1627 PASS INDEL;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0129;AVGPOST=0.9979;RSQ=0.9310;ERATE=0.0003;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26362884 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.685;LDAF=0.0023;AVGPOST=0.9984;RSQ=0.7025;ERATE=0.0005;THETA=0.0037;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26362910 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5172;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26362992 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0154;AVGPOST=0.9968;RSQ=0.9088;ERATE=0.0004;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26363015 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.721;LDAF=0.0025;AVGPOST=0.9959;RSQ=0.3575;ERATE=0.0007;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26363172 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.482;LDAF=0.0053;AVGPOST=0.9938;RSQ=0.5169;ERATE=0.0009;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26363193 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.760;LDAF=0.0022;AVGPOST=0.9982;RSQ=0.6400;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26363396 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.929;LDAF=0.0123;AVGPOST=0.9975;RSQ=0.9101;ERATE=0.0006;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26363563 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.710;LDAF=0.0036;AVGPOST=0.9976;RSQ=0.7444;ERATE=0.0005;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26363601 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0763;AVGPOST=0.9978;RSQ=0.9889;ERATE=0.0003;THETA=0.0007;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 26363694 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0085;AVGPOST=0.9983;RSQ=0.9261;ERATE=0.0004;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26363755 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.942;BRSQ=0.886;LDAF=0.6833;AVGPOST=0.9539;RSQ=0.9223;ERATE=0.0012;THETA=0.0006;AC=1517;AN=2184 GT:DS:GL:BD 0.69459707 1 1 26363764 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.921;BRSQ=0.722;LDAF=0.8381;AVGPOST=0.8912;RSQ=0.6917;ERATE=0.0076;THETA=0.0005;AC=1901;AN=2184 GT:DS:GL:BD 0.87042123 1 1 26363818 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.886;LDAF=0.0085;AVGPOST=0.9932;RSQ=0.6734;ERATE=0.0007;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26363978 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.683;LDAF=0.0038;AVGPOST=0.9977;RSQ=0.7372;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26364086 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.752;LDAF=0.0024;AVGPOST=0.9977;RSQ=0.6261;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26364102 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6631;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26364249 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7130;AVGPOST=0.9979;RSQ=0.9964;ERATE=0.0005;THETA=0.0006;AC=1556;AN=2184 GT:DS:GL:BD 0.71245420 1 1 26364287 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8720;ERATE=0.0005;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26364371 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6119;AVGPOST=0.9983;RSQ=0.9975;ERATE=0.0006;THETA=0.0007;AC=1335;AN=2184 GT:DS:GL:BD 0.61126375 1 1 26364437 . T TGA 736 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0033;AVGPOST=0.9988;RSQ=0.8344;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26364483 . T TA 803 PASS INDEL;BAVGPOST=0.997;BRSQ=0.816;LDAF=0.0089;AVGPOST=0.9968;RSQ=0.8497;ERATE=0.0004;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26364530 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0106;AVGPOST=0.9996;RSQ=0.9833;ERATE=0.0004;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26364642 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26364679 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7749;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26364690 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.978;LDAF=0.0299;AVGPOST=0.9968;RSQ=0.9556;ERATE=0.0004;THETA=0.0005;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 26364770 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.687;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5875;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26364851 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5379;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26364920 . ACT A 874 PASS INDEL;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0073;AVGPOST=0.9991;RSQ=0.9404;ERATE=0.0005;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26364942 . CA C 960 PASS INDEL;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0064;AVGPOST=0.9977;RSQ=0.8423;ERATE=0.0005;THETA=0.0012;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26365306 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0232;AVGPOST=0.9980;RSQ=0.9679;ERATE=0.0004;THETA=0.0002;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 26365374 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6119;AVGPOST=0.9981;RSQ=0.9970;ERATE=0.0006;THETA=0.0004;AC=1335;AN=2184 GT:DS:GL:BD 0.61126375 1 1 26365433 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0034;AVGPOST=0.9988;RSQ=0.8426;ERATE=0.0009;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26365456 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8625;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26365549 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7187;AVGPOST=0.9995;RSQ=0.9994;ERATE=0.0003;THETA=0.0016;AC=1568;AN=2184 GT:DS:GL:BD 0.71794873 1 1 26365561 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0252;AVGPOST=1.0000;RSQ=0.9992;ERATE=0.0003;THETA=0.0004;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 26365614 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26365648 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26365722 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26365752 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26365821 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26365897 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0013;AVGPOST=1.0000;RSQ=0.9839;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26366081 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0206;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0013;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 26366220 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26366275 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26366369 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9474;ERATE=0.0011;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26366410 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26366441 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26366450 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26366526 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8731;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26366714 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6003;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26366897 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.712;LDAF=0.0189;AVGPOST=0.9869;RSQ=0.7402;ERATE=0.0006;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 26367020 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.601;LDAF=0.0045;AVGPOST=0.9939;RSQ=0.4638;ERATE=0.0009;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26367028 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.559;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6242;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26367335 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0028;AVGPOST=0.9977;RSQ=0.6585;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26367528 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.984;LDAF=0.6902;AVGPOST=0.9973;RSQ=0.9957;ERATE=0.0006;THETA=0.0004;AC=1505;AN=2184 GT:DS:GL:BD 0.68910259 1 1 26367603 . G GA 154 PASS INDEL;BAVGPOST=0.975;BRSQ=0.539;LDAF=0.0433;AVGPOST=0.9475;RSQ=0.4915;ERATE=0.0171;THETA=0.0006;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 26367645 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0096;AVGPOST=0.9998;RSQ=0.9917;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26367765 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9997;RSQ=0.9877;ERATE=0.0004;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26367891 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0546;AVGPOST=0.9994;RSQ=0.9953;ERATE=0.0003;THETA=0.0008;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 26368048 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0129;AVGPOST=0.9995;RSQ=0.9831;ERATE=0.0003;THETA=0.0002;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26368261 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0754;AVGPOST=1.0000;RSQ=0.9997;ERATE=0.0003;THETA=0.0014;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 26368554 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8109;AVGPOST=0.9993;RSQ=0.9984;ERATE=0.0003;THETA=0.0008;AC=1770;AN=2184 GT:DS:GL:BD 0.81043959 1 1 26368729 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0362;AVGPOST=0.9998;RSQ=0.9971;ERATE=0.0003;THETA=0.0006;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 26368787 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6878;AVGPOST=0.9996;RSQ=0.9993;ERATE=0.0003;THETA=0.0007;AC=1501;AN=2184 GT:DS:GL:BD 0.68727106 1 1 26369074 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26369076 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26369132 . TCTC T 30 PASS INDEL;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0034;AVGPOST=0.9982;RSQ=0.7746;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26369173 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0008;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26369293 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26369297 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8894;AVGPOST=0.9997;RSQ=0.9988;ERATE=0.0003;THETA=0.0068;AC=1942;AN=2184 GT:DS:GL:BD 0.88919413 1 1 26369554 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9431;ERATE=0.0003;THETA=0.0028;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26369608 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6830;ERATE=0.0004;THETA=0.0061;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26369815 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26369857 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26369894 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26369971 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26370164 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6802;AVGPOST=0.9984;RSQ=0.9973;ERATE=0.0027;THETA=0.0028;AC=1485;AN=2184 GT:DS:GL:BD 0.67994505 1 1 26370267 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6004;AVGPOST=0.9983;RSQ=0.9976;ERATE=0.0004;THETA=0.0007;AC=1310;AN=2184 GT:DS:GL:BD 0.59981686 1 1 26370315 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.8031;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26370397 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=0.9998;RSQ=0.9830;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26370460 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0098;AVGPOST=0.9985;RSQ=0.9495;ERATE=0.0003;THETA=0.0007;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26370465 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0113;AVGPOST=0.9994;RSQ=0.9794;ERATE=0.0003;THETA=0.0041;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26370569 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26370761 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0013;AVGPOST=0.9999;RSQ=0.9672;ERATE=0.0006;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26370786 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8407;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26371068 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26371074 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.8031;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26371152 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0050;AVGPOST=0.9996;RSQ=0.9649;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26371220 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26371227 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26371250 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0120;AVGPOST=0.9998;RSQ=0.9926;ERATE=0.0003;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26371281 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1448;AVGPOST=0.9995;RSQ=0.9985;ERATE=0.0003;THETA=0.0004;AC=317;AN=2184 GT:DS:GL:BD 0.14514652 0 1 26371341 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26371500 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26371530 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26371669 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26371679 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8995;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26371691 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9474;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26371788 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.8383;AVGPOST=0.9999;RSQ=0.9997;ERATE=0.0003;THETA=0.0007;AC=1830;AN=2184 GT:DS:GL:BD 0.83791208 1 1 26371855 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9524;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26372073 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.667;LDAF=0.0025;AVGPOST=0.9983;RSQ=0.6706;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26372144 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.972;LDAF=0.8824;AVGPOST=0.9962;RSQ=0.9857;ERATE=0.0008;THETA=0.0004;AC=1928;AN=2184 GT:DS:GL:BD 0.88278389 1 1 26372282 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8299;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26372371 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26372605 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.895;LDAF=0.8005;AVGPOST=0.8877;RSQ=0.7345;ERATE=0.0121;THETA=0.0006;AC=1790;AN=2184 GT:DS:GL:BD 0.81959707 1 1 26372804 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.930;LDAF=0.9031;AVGPOST=0.9846;RSQ=0.9298;ERATE=0.0011;THETA=0.0002;AC=1983;AN=2184 GT:DS:GL:BD 0.90796703 1 1 26372920 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.712;LDAF=0.0023;AVGPOST=0.9965;RSQ=0.3758;ERATE=0.0007;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26373171 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0049;AVGPOST=0.9987;RSQ=0.8849;ERATE=0.0005;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26373257 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.576;LDAF=0.0015;AVGPOST=0.9978;RSQ=0.3638;ERATE=0.0006;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26373274 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0249;AVGPOST=0.9994;RSQ=0.9898;ERATE=0.0003;THETA=0.0004;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 26373321 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.905;LDAF=0.0107;AVGPOST=0.9953;RSQ=0.8308;ERATE=0.0005;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26373458 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0133;AVGPOST=0.9994;RSQ=0.9777;ERATE=0.0004;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26373587 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26373603 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6722;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26373645 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9817;ERATE=0.0003;THETA=0.0043;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26373694 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.8380;AVGPOST=0.9982;RSQ=0.9947;ERATE=0.0005;THETA=0.0006;AC=1830;AN=2184 GT:DS:GL:BD 0.83791208 1 1 26373702 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5975;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26373756 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.6170;AVGPOST=0.9980;RSQ=0.9968;ERATE=0.0007;THETA=0.0011;AC=1346;AN=2184 GT:DS:GL:BD 0.61630034 1 1 26373757 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8640;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26373922 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0247;AVGPOST=0.9992;RSQ=0.9859;ERATE=0.0003;THETA=0.0003;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 26374134 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.607;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7290;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26374286 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1027;AVGPOST=0.9980;RSQ=0.9925;ERATE=0.0004;THETA=0.0007;AC=223;AN=2184 GT:DS:GL:BD 0.10210623 0 1 26374329 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0042;AVGPOST=0.9984;RSQ=0.8510;ERATE=0.0006;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26374426 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8391;AVGPOST=0.9998;RSQ=0.9993;ERATE=0.0003;THETA=0.0006;AC=1832;AN=2184 GT:DS:GL:BD 0.83882785 1 1 26374722 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.880;LDAF=0.0323;AVGPOST=0.9899;RSQ=0.8833;ERATE=0.0024;THETA=0.0009;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 26374770 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.507;LDAF=0.0015;AVGPOST=0.9978;RSQ=0.3739;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26374779 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2229;AVGPOST=0.9957;RSQ=0.9892;ERATE=0.0013;THETA=0.0004;AC=486;AN=2184 GT:DS:GL:BD 0.22252747 0 1 26374839 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.594;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4758;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26374975 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26375012 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6753;AVGPOST=0.9984;RSQ=0.9968;ERATE=0.0005;THETA=0.0004;AC=1474;AN=2184 GT:DS:GL:BD 0.67490840 1 1 26375113 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7912;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26375131 . TA T 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4808;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26375237 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9180;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26375264 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26375332 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6755;AVGPOST=0.9990;RSQ=0.9980;ERATE=0.0004;THETA=0.0005;AC=1474;AN=2184 GT:DS:GL:BD 0.67490840 1 1 26375392 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0029;AVGPOST=0.9967;RSQ=0.5598;ERATE=0.0006;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26375474 . T TC 710 PASS INDEL;BAVGPOST=0.996;BRSQ=0.847;LDAF=0.0127;AVGPOST=0.9918;RSQ=0.7802;ERATE=0.0006;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26375502 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.5030;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26375577 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.8952;AVGPOST=0.9968;RSQ=0.9869;ERATE=0.0006;THETA=0.0004;AC=1955;AN=2184 GT:DS:GL:BD 0.89514655 1 1 26375718 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.890;LDAF=0.0158;AVGPOST=0.9951;RSQ=0.8851;ERATE=0.0006;THETA=0.0002;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26375743 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.7656;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26375780 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.709;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8465;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26375819 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.6755;AVGPOST=0.9987;RSQ=0.9974;ERATE=0.0005;THETA=0.0005;AC=1474;AN=2184 GT:DS:GL:BD 0.67490840 1 1 26375850 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0035;AVGPOST=0.9990;RSQ=0.8342;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26375874 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26375876 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.820;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7277;ERATE=0.0013;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26375915 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26376025 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6594;AVGPOST=0.9992;RSQ=0.9985;ERATE=0.0003;THETA=0.0007;AC=1439;AN=2184 GT:DS:GL:BD 0.65888280 1 1 26376029 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0157;AVGPOST=0.9979;RSQ=0.9405;ERATE=0.0003;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26376168 . G GCAC 1985 PASS INDEL;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0166;AVGPOST=0.9950;RSQ=0.8741;ERATE=0.0005;THETA=0.0006;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 26376215 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.709;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6983;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26376537 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.803;LDAF=0.0027;AVGPOST=0.9973;RSQ=0.5885;ERATE=0.0011;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26376607 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8975;AVGPOST=0.9997;RSQ=0.9986;ERATE=0.0003;THETA=0.0008;AC=1960;AN=2184 GT:DS:GL:BD 0.89743590 1 1 26376631 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6173;AVGPOST=0.9991;RSQ=0.9986;ERATE=0.0005;THETA=0.0003;AC=1347;AN=2184 GT:DS:GL:BD 0.61675823 1 1 26376659 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.8902;ERATE=0.0003;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26376747 . CA C 215 PASS INDEL;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4948;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26376768 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.763;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6850;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26376943 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0022;AVGPOST=0.9988;RSQ=0.7646;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26376996 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26377071 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6753;AVGPOST=0.9991;RSQ=0.9981;ERATE=0.0004;THETA=0.0003;AC=1474;AN=2184 GT:DS:GL:BD 0.67490840 1 1 26377125 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7903;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26377185 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.951;BRSQ=0.907;LDAF=0.6255;AVGPOST=0.8829;RSQ=0.8140;ERATE=0.0209;THETA=0.0004;AC=1429;AN=2184 GT:DS:GL:BD 0.65430403 1 1 26377226 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5519;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26377456 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6942;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26377595 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.6163;AVGPOST=0.9982;RSQ=0.9973;ERATE=0.0005;THETA=0.0004;AC=1346;AN=2184 GT:DS:GL:BD 0.61630034 1 1 26377603 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0036;AVGPOST=0.9995;RSQ=0.9458;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26377608 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.832;LDAF=0.0040;AVGPOST=0.9985;RSQ=0.8500;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26377766 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.718;LDAF=0.0027;AVGPOST=0.9963;RSQ=0.5417;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26377774 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6805;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26377880 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6762;AVGPOST=0.9976;RSQ=0.9957;ERATE=0.0006;THETA=0.0002;AC=1474;AN=2184 GT:DS:GL:BD 0.67490840 1 1 26377912 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26378002 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6178;AVGPOST=0.9984;RSQ=0.9975;ERATE=0.0008;THETA=0.0007;AC=1348;AN=2184 GT:DS:GL:BD 0.61721611 1 1 26378010 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7809;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26378211 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0021;AVGPOST=0.9982;RSQ=0.6610;ERATE=0.0006;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26378266 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6798;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26378268 . A AC 31 PASS INDEL;BAVGPOST=0.998;BRSQ=0.482;LDAF=0.0070;AVGPOST=0.9884;RSQ=0.2883;ERATE=0.0010;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26378329 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26378362 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9865;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26378415 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26378538 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9940;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26378559 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0078;AVGPOST=1.0000;RSQ=0.9975;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26378742 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=1.0000;RSQ=0.9879;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26378857 . CT C 2565 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0152;AVGPOST=0.9984;RSQ=0.9552;ERATE=0.0011;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 26378905 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0133;AVGPOST=0.9993;RSQ=0.9799;ERATE=0.0003;THETA=0.0006;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26378964 . G GT 43 PASS INDEL;BAVGPOST=0.990;BRSQ=0.472;LDAF=0.0178;AVGPOST=0.9746;RSQ=0.4267;ERATE=0.0060;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26378978 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.892;LDAF=0.8678;AVGPOST=0.9548;RSQ=0.8537;ERATE=0.0109;THETA=0.0011;AC=1925;AN=2184 GT:DS:GL:BD 0.88141024 1 1 26379016 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.966;LDAF=0.0312;AVGPOST=0.9912;RSQ=0.8902;ERATE=0.0005;THETA=0.0005;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 26379025 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.789;LDAF=0.0020;AVGPOST=0.9975;RSQ=0.4350;ERATE=0.0006;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26379060 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0019;AVGPOST=0.9970;RSQ=0.3753;ERATE=0.0009;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26379114 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0035;AVGPOST=0.9965;RSQ=0.6256;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26379496 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6561;AVGPOST=0.9936;RSQ=0.9887;ERATE=0.0012;THETA=0.0004;AC=1433;AN=2184 GT:DS:GL:BD 0.65613556 1 1 26379516 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.779;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5712;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26379812 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.909;LDAF=0.0183;AVGPOST=0.9912;RSQ=0.8265;ERATE=0.0008;THETA=0.0006;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 26379813 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.633;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4452;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26379819 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.728;LDAF=0.0067;AVGPOST=0.9977;RSQ=0.8648;ERATE=0.0005;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26379943 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.4239;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26379956 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.7940;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26380049 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0456;AVGPOST=0.9994;RSQ=0.9950;ERATE=0.0003;THETA=0.0004;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 26380207 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=0.9998;RSQ=0.9636;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26380248 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0051;AVGPOST=0.9996;RSQ=0.9662;ERATE=0.0004;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26380281 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26380384 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26380394 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0110;AVGPOST=0.9997;RSQ=0.9887;ERATE=0.0006;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26380471 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26380634 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26380658 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26380664 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8241;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26380805 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.7925;AVGPOST=0.9980;RSQ=0.9955;ERATE=0.0005;THETA=0.0006;AC=1730;AN=2184 GT:DS:GL:BD 0.79212457 1 1 26380995 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26381029 rs78835139 TC T 11605 PASS INDEL;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.1046;AVGPOST=0.9970;RSQ=0.9889;ERATE=0.0006;THETA=0.0008;AC=228;AN=2184 GT:DS:GL:BD 0.10439561 0 1 26381076 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7357;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26381217 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.6549;ERATE=0.0004;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26381376 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.823;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7342;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26381437 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0128;AVGPOST=0.9975;RSQ=0.9139;ERATE=0.0005;THETA=0.0007;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26381531 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9992;RSQ=0.8731;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26381695 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0472;AVGPOST=0.9998;RSQ=0.9977;ERATE=0.0003;THETA=0.0012;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 26381851 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.6173;AVGPOST=0.9991;RSQ=0.9985;ERATE=0.0004;THETA=0.0005;AC=1347;AN=2184 GT:DS:GL:BD 0.61675823 1 1 26381859 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0220;AVGPOST=0.9993;RSQ=0.9863;ERATE=0.0005;THETA=0.0042;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 26381957 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26382063 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9503;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26382080 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.780;LDAF=0.0038;AVGPOST=0.9981;RSQ=0.7789;ERATE=0.0006;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26382088 . TC T 81 PASS INDEL;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0018;AVGPOST=0.9986;RSQ=0.6463;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26382166 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0054;AVGPOST=0.9973;RSQ=0.7845;ERATE=0.0007;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26382280 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.8928;AVGPOST=0.9957;RSQ=0.9830;ERATE=0.0011;THETA=0.0005;AC=1953;AN=2184 GT:DS:GL:BD 0.89423078 1 1 26382281 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.700;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4885;ERATE=0.0005;THETA=0.0038;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26382358 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0080;AVGPOST=0.9995;RSQ=0.9709;ERATE=0.0004;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26382450 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0108;AVGPOST=0.9976;RSQ=0.9183;ERATE=0.0004;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26382477 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26382537 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26382578 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0234;AVGPOST=0.9997;RSQ=0.9943;ERATE=0.0003;THETA=0.0004;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 26382583 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8078;ERATE=0.0004;THETA=0.0052;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26382604 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.729;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6819;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26382621 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7748;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26382685 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7419;ERATE=0.0006;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26382801 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26382952 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0398;AVGPOST=0.9985;RSQ=0.9855;ERATE=0.0005;THETA=0.0036;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 26383125 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1999;AVGPOST=0.9981;RSQ=0.9952;ERATE=0.0006;THETA=0.0004;AC=437;AN=2184 GT:DS:GL:BD 0.20009157 0 1 26383169 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0585;AVGPOST=0.9993;RSQ=0.9947;ERATE=0.0003;THETA=0.0007;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 26383274 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.772;LDAF=0.0049;AVGPOST=0.9965;RSQ=0.7036;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26383400 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9654;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26383618 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0781;AVGPOST=0.9999;RSQ=0.9993;ERATE=0.0007;THETA=0.0004;AC=171;AN=2184 GT:DS:GL:BD 0.07829671 0 1 26383645 rs72249838 CCAGGGGT C 22995 PASS INDEL;BAVGPOST=0.972;BRSQ=0.886;LDAF=0.1124;AVGPOST=0.9648;RSQ=0.8850;ERATE=0.0012;THETA=0.0006;AC=235;AN=2184 GT:DS:GL:BD 0.10760073 0 1 26383647 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0014;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26383659 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0083;AVGPOST=0.9999;RSQ=0.9928;ERATE=0.0004;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26383700 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26383720 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26383861 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26383875 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2618;AVGPOST=0.9998;RSQ=0.9996;ERATE=0.0003;THETA=0.0008;AC=573;AN=2184 GT:DS:GL:BD 0.26236263 0 1 26383899 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26383975 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26384013 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1293;AVGPOST=0.9996;RSQ=0.9986;ERATE=0.0003;THETA=0.0012;AC=283;AN=2184 GT:DS:GL:BD 0.12957875 0 1 26384016 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26384149 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26384346 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26384354 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26384418 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26384538 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9687;ERATE=0.0003;THETA=0.0029;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26384613 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0104;AVGPOST=0.9998;RSQ=0.9907;ERATE=0.0003;THETA=0.0011;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26384690 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2374;AVGPOST=0.9989;RSQ=0.9976;ERATE=0.0005;THETA=0.0005;AC=520;AN=2184 GT:DS:GL:BD 0.23809524 0 1 26384719 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0005;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26384736 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9594;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26384757 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9440;ERATE=0.0003;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26384907 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26385003 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1983;AVGPOST=0.9999;RSQ=0.9998;ERATE=0.0003;THETA=0.0004;AC=434;AN=2184 GT:DS:GL:BD 0.19871795 0 1 26385066 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0008;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26385067 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26385088 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9531;ERATE=0.0008;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26385140 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26385150 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1797;AVGPOST=0.9993;RSQ=0.9986;ERATE=0.0003;THETA=0.0005;AC=394;AN=2184 GT:DS:GL:BD 0.18040293 0 1 26385306 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0242;AVGPOST=0.9999;RSQ=0.9983;ERATE=0.0003;THETA=0.0008;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 26385385 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0161;AVGPOST=0.9980;RSQ=0.9544;ERATE=0.0005;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 26385431 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8464;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26385644 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.843;LDAF=0.0046;AVGPOST=0.9978;RSQ=0.7916;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26385660 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2202;AVGPOST=0.9974;RSQ=0.9942;ERATE=0.0004;THETA=0.0005;AC=483;AN=2184 GT:DS:GL:BD 0.22115384 0 1 26385707 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0021;AVGPOST=0.9983;RSQ=0.6366;ERATE=0.0008;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26385769 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0036;AVGPOST=0.9982;RSQ=0.7887;ERATE=0.0010;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26385853 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0061;AVGPOST=0.9996;RSQ=0.9702;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26385914 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0057;AVGPOST=0.9996;RSQ=0.9653;ERATE=0.0004;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26385923 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6208;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26385936 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0035;AVGPOST=0.9985;RSQ=0.8529;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26385937 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0064;AVGPOST=0.9989;RSQ=0.9346;ERATE=0.0003;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26385960 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9890;ERATE=0.0004;THETA=0.0027;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26386051 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0137;AVGPOST=0.9995;RSQ=0.9840;ERATE=0.0003;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 26386105 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8104;ERATE=0.0013;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26386297 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.6644;AVGPOST=0.9913;RSQ=0.9860;ERATE=0.0018;THETA=0.0072;AC=1450;AN=2184 GT:DS:GL:BD 0.66391939 1 1 26386312 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8860;ERATE=0.0004;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26386383 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.666;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0059;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26386395 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0032;AVGPOST=0.9994;RSQ=0.9206;ERATE=0.0008;THETA=0.0120;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26386451 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0018;AVGPOST=0.9999;RSQ=0.9638;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26386713 . T TA 1175 PASS INDEL;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0112;AVGPOST=0.9967;RSQ=0.8897;ERATE=0.0005;THETA=0.0037;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26386734 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0065;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26386750 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0097;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26386771 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0042;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26386806 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0046;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26386860 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0135;AVGPOST=0.9994;RSQ=0.9835;ERATE=0.0015;THETA=0.0043;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26386994 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0122;AVGPOST=0.9996;RSQ=0.9880;ERATE=0.0003;THETA=0.0128;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26387007 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.9127;ERATE=0.0005;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26387058 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8653;ERATE=0.0005;THETA=0.0102;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26387087 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9914;ERATE=0.0003;THETA=0.0011;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26387147 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9550;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26387232 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8432;ERATE=0.0004;THETA=0.0136;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26387244 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8005;ERATE=0.0003;THETA=0.0177;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26387380 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6200;ERATE=0.0004;THETA=0.0093;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26387415 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.953;LDAF=0.0342;AVGPOST=0.9947;RSQ=0.9459;ERATE=0.0007;THETA=0.0010;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 26387423 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.980;LDAF=0.2013;AVGPOST=0.9862;RSQ=0.9707;ERATE=0.0040;THETA=0.0009;AC=433;AN=2184 GT:DS:GL:BD 0.19826007 0 1 26387492 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26387609 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26387610 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0220;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26387625 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1333;AVGPOST=0.9989;RSQ=0.9966;ERATE=0.0007;THETA=0.0024;AC=291;AN=2184 GT:DS:GL:BD 0.13324176 0 1 26387675 . ACT A 199 PASS INDEL;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4994;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26387681 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26387763 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0087;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26387780 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0001;AVGPOST=0.9999;RSQ=0.0499;ERATE=0.0003;THETA=0.0070;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26387783 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.8767;ERATE=0.0006;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26387927 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0042;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26387969 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0170;AVGPOST=0.9998;RSQ=0.9951;ERATE=0.0003;THETA=0.0023;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 26388159 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0004;THETA=0.0041;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26388161 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0093;AVGPOST=0.9997;RSQ=0.9858;ERATE=0.0003;THETA=0.0038;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26388212 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.952;LDAF=0.0150;AVGPOST=0.9983;RSQ=0.9492;ERATE=0.0003;THETA=0.0080;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 26388241 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2552;AVGPOST=0.9965;RSQ=0.9939;ERATE=0.0005;THETA=0.0011;AC=558;AN=2184 GT:DS:GL:BD 0.25549451 0 1 26388316 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7497;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26388367 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0093;AVGPOST=0.9997;RSQ=0.9857;ERATE=0.0004;THETA=0.0008;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26388478 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8858;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26388498 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0524;AVGPOST=0.9976;RSQ=0.9831;ERATE=0.0005;THETA=0.0012;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 26388524 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0506;AVGPOST=0.9947;RSQ=0.9608;ERATE=0.0006;THETA=0.0007;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 26388709 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8102;ERATE=0.0006;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26388710 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.721;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.3811;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26388747 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.929;LDAF=0.0215;AVGPOST=0.9980;RSQ=0.9609;ERATE=0.0006;THETA=0.0026;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 26388830 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26388864 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6126;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26388996 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.961;LDAF=0.0072;AVGPOST=0.9989;RSQ=0.9396;ERATE=0.0004;THETA=0.0021;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26389027 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0006;AVGPOST=0.9992;RSQ=0.4419;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26389094 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8795;ERATE=0.0003;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26389153 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7566;ERATE=0.0004;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26389255 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6952;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26389257 . A AT 46 PASS INDEL;BAVGPOST=0.999;BRSQ=0.482;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4828;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26389392 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0054;AVGPOST=0.9981;RSQ=0.8573;ERATE=0.0007;THETA=0.0027;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26389405 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0295;AVGPOST=0.9989;RSQ=0.9850;ERATE=0.0003;THETA=0.0008;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 26389498 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.816;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8352;ERATE=0.0006;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26389633 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2525;AVGPOST=0.9973;RSQ=0.9948;ERATE=0.0005;THETA=0.0005;AC=553;AN=2184 GT:DS:GL:BD 0.25320512 0 1 26389647 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1936;AVGPOST=0.9968;RSQ=0.9919;ERATE=0.0004;THETA=0.0006;AC=421;AN=2184 GT:DS:GL:BD 0.19276556 0 1 26389695 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26389732 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.959;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8052;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26389752 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8388;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26389895 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26389959 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7389;ERATE=0.0015;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26390130 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0294;AVGPOST=0.9996;RSQ=0.9945;ERATE=0.0004;THETA=0.0020;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 26390131 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4939;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26390154 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.2348;AVGPOST=0.9985;RSQ=0.9965;ERATE=0.0005;THETA=0.0006;AC=512;AN=2184 GT:DS:GL:BD 0.23443224 0 1 26390181 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2370;AVGPOST=0.9986;RSQ=0.9967;ERATE=0.0005;THETA=0.0006;AC=517;AN=2184 GT:DS:GL:BD 0.23672161 0 1 26390251 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.939;LDAF=0.0045;AVGPOST=0.9989;RSQ=0.8937;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26390328 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2053;AVGPOST=0.9994;RSQ=0.9983;ERATE=0.0003;THETA=0.0009;AC=448;AN=2184 GT:DS:GL:BD 0.20512821 0 1 26390490 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0294;AVGPOST=0.9995;RSQ=0.9934;ERATE=0.0003;THETA=0.0012;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 26390499 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5709;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26390501 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0169;AVGPOST=0.9946;RSQ=0.8722;ERATE=0.0005;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 26390505 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.624;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4525;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26390575 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6646;ERATE=0.0005;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26390659 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8005;ERATE=0.0006;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26390765 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6885;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26390819 . AG A 301 PASS INDEL;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0030;AVGPOST=0.9991;RSQ=0.8727;ERATE=0.0003;THETA=0.0029;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26390833 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1488;AVGPOST=0.9991;RSQ=0.9967;ERATE=0.0004;THETA=0.0008;AC=324;AN=2184 GT:DS:GL:BD 0.14835165 0 1 26391140 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0213;AVGPOST=0.9995;RSQ=0.9894;ERATE=0.0003;THETA=0.0005;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 26391259 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0308;AVGPOST=0.9995;RSQ=0.9954;ERATE=0.0003;THETA=0.0003;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 26391353 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0309;AVGPOST=0.9993;RSQ=0.9917;ERATE=0.0004;THETA=0.0008;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 26391392 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0023;AVGPOST=0.9974;RSQ=0.6180;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26391443 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.922;LDAF=0.0087;AVGPOST=0.9984;RSQ=0.9196;ERATE=0.0004;THETA=0.0029;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26391526 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0069;AVGPOST=0.9989;RSQ=0.9362;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26391581 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.815;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9426;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26391601 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0020;AVGPOST=0.9992;RSQ=0.8505;ERATE=0.0004;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26391662 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.979;LDAF=0.1228;AVGPOST=0.9970;RSQ=0.9886;ERATE=0.0006;THETA=0.0006;AC=267;AN=2184 GT:DS:GL:BD 0.12225275 0 1 26391663 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.767;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5142;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26391741 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7604;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26391768 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.594;LDAF=0.0020;AVGPOST=0.9980;RSQ=0.6334;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26391789 . AC A 82 PASS INDEL;BAVGPOST=1.000;BRSQ=0.734;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4788;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26391849 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1080;AVGPOST=0.9981;RSQ=0.9915;ERATE=0.0005;THETA=0.0007;AC=234;AN=2184 GT:DS:GL:BD 0.10714286 0 1 26391909 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.736;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5326;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26391963 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0062;AVGPOST=0.9985;RSQ=0.9066;ERATE=0.0006;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26391969 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7822;ERATE=0.0006;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26391991 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26392075 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8446;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26392140 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8799;ERATE=0.0003;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26392248 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8255;ERATE=0.0004;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26392300 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9183;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26392345 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0064;AVGPOST=0.9992;RSQ=0.9493;ERATE=0.0003;THETA=0.0009;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26392388 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0294;AVGPOST=0.9997;RSQ=0.9954;ERATE=0.0003;THETA=0.0008;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 26392389 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0001;AVGPOST=0.9997;RSQ=0.2165;ERATE=0.0003;THETA=0.0014;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26392415 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0466;AVGPOST=1.0000;RSQ=0.9995;ERATE=0.0003;THETA=0.0006;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 26392436 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0292;AVGPOST=0.9998;RSQ=0.9967;ERATE=0.0003;THETA=0.0009;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 26392437 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1086;AVGPOST=0.9994;RSQ=0.9974;ERATE=0.0003;THETA=0.0005;AC=236;AN=2184 GT:DS:GL:BD 0.10805861 0 1 26392530 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0294;AVGPOST=0.9998;RSQ=0.9968;ERATE=0.0003;THETA=0.0004;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 26392535 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1238;AVGPOST=0.9998;RSQ=0.9990;ERATE=0.0003;THETA=0.0006;AC=270;AN=2184 GT:DS:GL:BD 0.12362637 0 1 26392663 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0293;AVGPOST=0.9999;RSQ=0.9981;ERATE=0.0003;THETA=0.0007;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 26392734 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9225;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26392785 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9594;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26392824 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0268;AVGPOST=0.9991;RSQ=0.9889;ERATE=0.0004;THETA=0.0005;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 26392828 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26392929 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8657;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26392971 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0293;AVGPOST=0.9997;RSQ=0.9960;ERATE=0.0003;THETA=0.0008;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 26392974 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0294;AVGPOST=0.9997;RSQ=0.9963;ERATE=0.0003;THETA=0.0012;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 26393033 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26393038 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9474;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26393224 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0294;AVGPOST=0.9997;RSQ=0.9961;ERATE=0.0003;THETA=0.0003;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 26393329 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1239;AVGPOST=0.9997;RSQ=0.9986;ERATE=0.0003;THETA=0.0008;AC=270;AN=2184 GT:DS:GL:BD 0.12362637 0 1 26393347 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1210;AVGPOST=0.9988;RSQ=0.9957;ERATE=0.0004;THETA=0.0009;AC=264;AN=2184 GT:DS:GL:BD 0.12087912 0 1 26393505 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.924;LDAF=0.0566;AVGPOST=0.9935;RSQ=0.9549;ERATE=0.0004;THETA=0.0005;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 26393594 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.8300;ERATE=0.0003;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26393665 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0111;AVGPOST=0.9994;RSQ=0.9772;ERATE=0.0004;THETA=0.0012;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26393851 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9792;ERATE=0.0005;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26393937 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26393944 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26393974 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0466;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 26394023 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0018;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26394083 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9666;ERATE=0.0010;THETA=0.0022;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26394092 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26394122 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0008;AVGPOST=0.9998;RSQ=0.8927;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26394136 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26394201 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0298;AVGPOST=0.9970;RSQ=0.9586;ERATE=0.0004;THETA=0.0007;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 26394301 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0308;AVGPOST=0.9996;RSQ=0.9944;ERATE=0.0003;THETA=0.0009;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 26394413 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0079;AVGPOST=0.9979;RSQ=0.8837;ERATE=0.0004;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26394466 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7563;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26394594 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.552;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.4901;ERATE=0.0008;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26394729 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.963;LDAF=0.2183;AVGPOST=0.9871;RSQ=0.9749;ERATE=0.0008;THETA=0.0007;AC=479;AN=2184 GT:DS:GL:BD 0.21932234 0 1 26394730 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.8184;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26394804 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6473;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26394916 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4978;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26394997 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.1981;AVGPOST=0.9986;RSQ=0.9964;ERATE=0.0004;THETA=0.0005;AC=433;AN=2184 GT:DS:GL:BD 0.19826007 0 1 26395042 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6195;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26395124 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.603;LDAF=0.0189;AVGPOST=0.9789;RSQ=0.5614;ERATE=0.0042;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26395192 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.691;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.4035;ERATE=0.0005;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26395278 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0055;AVGPOST=0.9952;RSQ=0.6783;ERATE=0.0005;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26395334 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8392;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26395539 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1203;AVGPOST=0.9994;RSQ=0.9974;ERATE=0.0004;THETA=0.0005;AC=262;AN=2184 GT:DS:GL:BD 0.11996337 0 1 26395617 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2179;AVGPOST=0.9959;RSQ=0.9916;ERATE=0.0006;THETA=0.0008;AC=474;AN=2184 GT:DS:GL:BD 0.21703297 0 1 26395738 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.761;LDAF=0.0036;AVGPOST=0.9963;RSQ=0.5958;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26395741 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.978;LDAF=0.2524;AVGPOST=0.9936;RSQ=0.9884;ERATE=0.0008;THETA=0.0007;AC=553;AN=2184 GT:DS:GL:BD 0.25320512 0 1 26395749 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.952;LDAF=0.0305;AVGPOST=0.9962;RSQ=0.9510;ERATE=0.0006;THETA=0.0008;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 26395867 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6464;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26395892 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.6549;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26395898 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1205;AVGPOST=0.9991;RSQ=0.9961;ERATE=0.0004;THETA=0.0010;AC=262;AN=2184 GT:DS:GL:BD 0.11996337 0 1 26396037 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.729;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5164;ERATE=0.0005;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26396065 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.924;LDAF=0.2222;AVGPOST=0.9814;RSQ=0.9610;ERATE=0.0026;THETA=0.0003;AC=490;AN=2184 GT:DS:GL:BD 0.22435898 0 1 26396146 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.554;LDAF=0.0152;AVGPOST=0.9844;RSQ=0.5855;ERATE=0.0044;THETA=0.0009;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26396375 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5744;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26396411 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26396529 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26396881 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26396920 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7586;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26397030 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0059;AVGPOST=0.9997;RSQ=0.9764;ERATE=0.0003;THETA=0.0011;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26397062 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26397199 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0760;AVGPOST=0.9997;RSQ=0.9983;ERATE=0.0003;THETA=0.0005;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 26397229 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26397236 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0019;AVGPOST=0.9994;RSQ=0.8518;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26397280 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0210;AVGPOST=0.9989;RSQ=0.9819;ERATE=0.0003;THETA=0.0006;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 26397286 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1543;AVGPOST=0.9989;RSQ=0.9967;ERATE=0.0003;THETA=0.0006;AC=337;AN=2184 GT:DS:GL:BD 0.15430403 0 1 26397335 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26397346 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9313;ERATE=0.0003;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26397347 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26397383 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0759;AVGPOST=0.9998;RSQ=0.9988;ERATE=0.0003;THETA=0.0006;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 26397424 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7999;ERATE=0.0003;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26397462 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9787;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26397473 . TCTC T 62 PASS INDEL;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7129;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26397626 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0152;AVGPOST=0.9999;RSQ=0.9956;ERATE=0.0003;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26397778 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0022;AVGPOST=0.9988;RSQ=0.7679;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26397892 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.656;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6620;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26397934 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.782;LDAF=0.0019;AVGPOST=0.9992;RSQ=0.8358;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26398461 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.377;LDAF=0.0030;AVGPOST=0.9949;RSQ=0.3215;ERATE=0.0008;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26398465 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.843;LDAF=0.0083;AVGPOST=0.9948;RSQ=0.7620;ERATE=0.0008;THETA=0.0051;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26398493 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.761;LDAF=0.0023;AVGPOST=0.9982;RSQ=0.6434;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26398587 rs67712721 TG T 6221 PASS INDEL;BAVGPOST=0.947;BRSQ=0.863;LDAF=0.2242;AVGPOST=0.9812;RSQ=0.9586;ERATE=0.0011;THETA=0.0018;AC=500;AN=2184 GT:DS:GL:BD 0.22893773 0 1 26398588 rs67712721 G GT 4603 PASS INDEL;BAVGPOST=0.942;BRSQ=0.842;LDAF=0.2116;AVGPOST=0.9747;RSQ=0.9442;ERATE=0.0009;THETA=0.0012;AC=469;AN=2184 GT:DS:GL:BD 0.21474358 0 1 26398594 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.928;BRSQ=0.883;LDAF=0.5990;AVGPOST=0.8986;RSQ=0.8624;ERATE=0.0217;THETA=0.0009;AC=1345;AN=2184 GT:DS:GL:BD 0.61584246 1 1 26398598 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0024;AVGPOST=0.9975;RSQ=0.5507;ERATE=0.0006;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26398743 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9921;ERATE=0.0003;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26398765 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0327;AVGPOST=0.9990;RSQ=0.9906;ERATE=0.0004;THETA=0.0012;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 26398778 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0066;AVGPOST=0.9997;RSQ=0.9776;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26398828 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7052;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26398834 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7117;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26398924 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7543;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26398945 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.7023;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26398981 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.958;LDAF=0.0193;AVGPOST=0.9973;RSQ=0.9429;ERATE=0.0005;THETA=0.0007;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 26398992 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.869;LDAF=0.0073;AVGPOST=0.9984;RSQ=0.9109;ERATE=0.0012;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26399056 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.5012;ERATE=0.0004;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26399138 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7477;ERATE=0.0005;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26399209 . GC G 555 PASS INDEL;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0051;AVGPOST=0.9985;RSQ=0.8677;ERATE=0.0006;THETA=0.0010;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26399230 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.990;LDAF=0.6375;AVGPOST=0.9909;RSQ=0.9880;ERATE=0.0004;THETA=0.0010;AC=1389;AN=2184 GT:DS:GL:BD 0.63598901 1 1 26399241 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0033;AVGPOST=0.9995;RSQ=0.9295;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26399263 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26399285 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8608;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26399332 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7915;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26399393 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9328;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26399441 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26399477 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0331;AVGPOST=0.9987;RSQ=0.9881;ERATE=0.0003;THETA=0.0009;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 26399490 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26399493 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0058;AVGPOST=0.9991;RSQ=0.9315;ERATE=0.0004;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26399517 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0101;AVGPOST=0.9985;RSQ=0.9455;ERATE=0.0005;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26399627 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0023;AVGPOST=0.9984;RSQ=0.7418;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26399839 . CT C 382 PASS INDEL;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9357;ERATE=0.0003;THETA=0.0029;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26399872 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0048;AVGPOST=0.9986;RSQ=0.8811;ERATE=0.0004;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26399962 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.654;LDAF=0.0052;AVGPOST=0.9960;RSQ=0.7076;ERATE=0.0006;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26400094 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0038;AVGPOST=0.9981;RSQ=0.7863;ERATE=0.0007;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26400111 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0161;AVGPOST=0.9978;RSQ=0.9441;ERATE=0.0003;THETA=0.0015;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26400126 rs66916457 A AT 414 PASS INDEL;BAVGPOST=0.970;BRSQ=0.530;LDAF=0.0479;AVGPOST=0.9428;RSQ=0.4788;ERATE=0.0165;THETA=0.0008;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 26400152 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5545;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26400165 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8801;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26400193 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.911;LDAF=0.0090;AVGPOST=0.9950;RSQ=0.7751;ERATE=0.0004;THETA=0.0010;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26400222 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0032;AVGPOST=0.9974;RSQ=0.6784;ERATE=0.0008;THETA=0.0021;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26400268 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.662;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5518;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26400366 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6082;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26400422 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26400564 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.774;LDAF=0.0026;AVGPOST=0.9988;RSQ=0.8074;ERATE=0.0007;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26400777 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26400806 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.901;LDAF=0.0086;AVGPOST=0.9963;RSQ=0.8074;ERATE=0.0006;THETA=0.0015;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26400887 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0048;AVGPOST=0.9993;RSQ=0.9500;ERATE=0.0004;THETA=0.0014;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26401007 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5903;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26401173 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26401331 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2505;AVGPOST=0.9970;RSQ=0.9946;ERATE=0.0004;THETA=0.0012;AC=545;AN=2184 GT:DS:GL:BD 0.24954212 0 1 26401337 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26401342 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8455;ERATE=0.0005;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26401403 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2320;AVGPOST=0.9986;RSQ=0.9971;ERATE=0.0004;THETA=0.0011;AC=507;AN=2184 GT:DS:GL:BD 0.23214285 0 1 26401547 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.890;LDAF=0.0086;AVGPOST=0.9955;RSQ=0.8110;ERATE=0.0003;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26401591 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.6942;ERATE=0.0005;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26401595 . TG T 103 PASS INDEL;BAVGPOST=0.998;BRSQ=0.610;LDAF=0.0041;AVGPOST=0.9963;RSQ=0.6875;ERATE=0.0004;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26401627 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0056;AVGPOST=0.9979;RSQ=0.8549;ERATE=0.0007;THETA=0.0019;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26401807 rs68000891 TG T 9722 PASS INDEL;BAVGPOST=0.980;BRSQ=0.948;LDAF=0.2045;AVGPOST=0.9920;RSQ=0.9798;ERATE=0.0012;THETA=0.0010;AC=450;AN=2184 GT:DS:GL:BD 0.20604396 0 1 26401808 rs68000891 G GT 3072 PASS INDEL;BAVGPOST=0.925;BRSQ=0.729;LDAF=0.1625;AVGPOST=0.9112;RSQ=0.7535;ERATE=0.0257;THETA=0.0009;AC=331;AN=2184 GT:DS:GL:BD 0.15155677 0 1 26402023 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2403;AVGPOST=0.9993;RSQ=0.9984;ERATE=0.0004;THETA=0.0008;AC=525;AN=2184 GT:DS:GL:BD 0.24038461 0 1 26402328 . GT G 61 PASS INDEL;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8247;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26402505 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6252;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26402515 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9144;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26402542 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6037;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26402547 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6135;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26402621 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.2402;AVGPOST=0.9988;RSQ=0.9973;ERATE=0.0004;THETA=0.0021;AC=525;AN=2184 GT:DS:GL:BD 0.24038461 0 1 26402693 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.926;LDAF=0.0180;AVGPOST=0.9970;RSQ=0.9335;ERATE=0.0007;THETA=0.0012;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 26402704 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7684;ERATE=0.0008;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26402705 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.7079;ERATE=0.0005;THETA=0.0039;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26402817 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9369;ERATE=0.0007;THETA=0.0012;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26402820 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2400;AVGPOST=0.9992;RSQ=0.9984;ERATE=0.0004;THETA=0.0006;AC=524;AN=2184 GT:DS:GL:BD 0.23992674 0 1 26402846 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8311;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26402858 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.964;LDAF=0.0422;AVGPOST=0.9975;RSQ=0.9789;ERATE=0.0006;THETA=0.0008;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 26402952 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.811;LDAF=0.0034;AVGPOST=0.9986;RSQ=0.8334;ERATE=0.0007;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26402954 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26403017 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26403098 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2403;AVGPOST=0.9990;RSQ=0.9982;ERATE=0.0004;THETA=0.0009;AC=524;AN=2184 GT:DS:GL:BD 0.23992674 0 1 26403136 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0044;AVGPOST=0.9979;RSQ=0.8096;ERATE=0.0003;THETA=0.0023;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26403168 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0327;AVGPOST=0.9994;RSQ=0.9943;ERATE=0.0003;THETA=0.0007;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 26403227 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0223;AVGPOST=0.9993;RSQ=0.9886;ERATE=0.0003;THETA=0.0005;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 26403269 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26403381 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0572;AVGPOST=0.9980;RSQ=0.9850;ERATE=0.0004;THETA=0.0006;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 26403470 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2074;AVGPOST=0.9979;RSQ=0.9947;ERATE=0.0006;THETA=0.0007;AC=452;AN=2184 GT:DS:GL:BD 0.20695971 0 1 26403499 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.614;LDAF=0.0061;AVGPOST=0.9954;RSQ=0.7166;ERATE=0.0009;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26403530 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.979;LDAF=0.2379;AVGPOST=0.9939;RSQ=0.9873;ERATE=0.0008;THETA=0.0006;AC=521;AN=2184 GT:DS:GL:BD 0.23855311 0 1 26403553 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0340;AVGPOST=0.9970;RSQ=0.9682;ERATE=0.0005;THETA=0.0005;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 26403619 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0631;AVGPOST=0.9941;RSQ=0.9616;ERATE=0.0007;THETA=0.0007;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 26403693 rs55848741 ATAT A 897 PASS INDEL;BAVGPOST=0.417;BRSQ=0.094;LDAF=0.4660;AVGPOST=0.6260;RSQ=0.4000;ERATE=0.0181;THETA=0.0005;AC=881;AN=2184 GT:DS:GL:BD 0.40338829 0 1 26403930 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5785;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26403991 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1813;AVGPOST=0.9992;RSQ=0.9977;ERATE=0.0003;THETA=0.0008;AC=396;AN=2184 GT:DS:GL:BD 0.18131869 0 1 26404006 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9149;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26404149 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.9011;ERATE=0.0003;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26404241 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26404250 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9126;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26404366 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.789;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8270;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26404441 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1814;AVGPOST=0.9977;RSQ=0.9937;ERATE=0.0008;THETA=0.0007;AC=395;AN=2184 GT:DS:GL:BD 0.18086080 0 1 26404496 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26404721 . CTT C 129 PASS INDEL;BAVGPOST=1.000;BRSQ=0.665;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0004;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26404741 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0068;AVGPOST=0.9969;RSQ=0.8209;ERATE=0.0004;THETA=0.0015;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26404747 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1451;AVGPOST=0.9975;RSQ=0.9917;ERATE=0.0006;THETA=0.0008;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 26404846 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0036;AVGPOST=0.9978;RSQ=0.7934;ERATE=0.0004;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26404866 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0023;AVGPOST=0.9996;RSQ=0.9209;ERATE=0.0004;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26404874 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0161;AVGPOST=0.9990;RSQ=0.9731;ERATE=0.0006;THETA=0.0006;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 26404952 . ACT A 64 PASS INDEL;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7204;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26405068 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7199;ERATE=0.0004;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26405084 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0019;AVGPOST=0.9994;RSQ=0.8860;ERATE=0.0003;THETA=0.0025;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26405093 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0023;AVGPOST=0.9982;RSQ=0.7489;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26405293 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.7815;ERATE=0.0012;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26405376 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5797;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26405392 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.886;LDAF=0.0073;AVGPOST=0.9969;RSQ=0.8348;ERATE=0.0003;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26405412 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0357;AVGPOST=0.9992;RSQ=0.9914;ERATE=0.0004;THETA=0.0010;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 26405458 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1763;AVGPOST=0.9986;RSQ=0.9962;ERATE=0.0003;THETA=0.0007;AC=384;AN=2184 GT:DS:GL:BD 0.17582418 0 1 26405486 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0439;AVGPOST=0.9984;RSQ=0.9859;ERATE=0.0004;THETA=0.0008;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 26405553 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8888;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26405586 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26405634 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1569;AVGPOST=0.9991;RSQ=0.9973;ERATE=0.0004;THETA=0.0009;AC=342;AN=2184 GT:DS:GL:BD 0.15659341 0 1 26405691 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8483;ERATE=0.0003;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26405725 . GC G 13861 PASS INDEL;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.1084;AVGPOST=0.9963;RSQ=0.9842;ERATE=0.0006;THETA=0.0005;AC=235;AN=2184 GT:DS:GL:BD 0.10760073 0 1 26405841 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.733;LDAF=0.0151;AVGPOST=0.9885;RSQ=0.6941;ERATE=0.0017;THETA=0.0009;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26406042 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.699;LDAF=0.0019;AVGPOST=0.9978;RSQ=0.5246;ERATE=0.0006;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26406146 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8913;ERATE=0.0004;THETA=0.0018;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26406177 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26406354 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.911;LDAF=0.0044;AVGPOST=0.9985;RSQ=0.8691;ERATE=0.0005;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26406462 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0440;AVGPOST=0.9985;RSQ=0.9860;ERATE=0.0004;THETA=0.0011;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 26406676 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7280;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26406709 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5855;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26406722 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0118;AVGPOST=0.9992;RSQ=0.9719;ERATE=0.0003;THETA=0.0010;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26406778 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0036;AVGPOST=0.9984;RSQ=0.8071;ERATE=0.0010;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26406880 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9061;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26406904 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0084;AVGPOST=0.9994;RSQ=0.9690;ERATE=0.0004;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26407036 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.735;LDAF=0.0020;AVGPOST=0.9980;RSQ=0.6416;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26407063 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1770;AVGPOST=0.9988;RSQ=0.9965;ERATE=0.0004;THETA=0.0008;AC=386;AN=2184 GT:DS:GL:BD 0.17673993 0 1 26407099 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9748;ERATE=0.0004;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26407150 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6008;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26407181 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5563;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26407339 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9087;ERATE=0.0004;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26407532 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26407533 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0025;AVGPOST=0.9994;RSQ=0.8871;ERATE=0.0004;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26407577 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9144;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26407790 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.690;LDAF=0.0019;AVGPOST=0.9970;RSQ=0.3499;ERATE=0.0006;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26407856 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0058;AVGPOST=0.9984;RSQ=0.8824;ERATE=0.0003;THETA=0.0018;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26408082 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0013;AVGPOST=0.9981;RSQ=0.5471;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26408096 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26408196 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0020;AVGPOST=0.9982;RSQ=0.6756;ERATE=0.0004;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26408268 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.414;LDAF=0.0033;AVGPOST=0.9975;RSQ=0.7230;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26408273 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0012;AVGPOST=0.9983;RSQ=0.3330;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26408310 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.850;LDAF=0.0066;AVGPOST=0.9904;RSQ=0.4631;ERATE=0.0018;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26408400 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.813;LDAF=0.0095;AVGPOST=0.9976;RSQ=0.8939;ERATE=0.0006;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26408409 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.979;LDAF=0.2351;AVGPOST=0.9900;RSQ=0.9806;ERATE=0.0018;THETA=0.0006;AC=511;AN=2184 GT:DS:GL:BD 0.23397435 0 1 26408483 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6368;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26408567 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8251;ERATE=0.0004;THETA=0.0020;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26408593 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26408768 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1294;AVGPOST=0.9980;RSQ=0.9928;ERATE=0.0005;THETA=0.0005;AC=282;AN=2184 GT:DS:GL:BD 0.12912089 0 1 26408833 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5993;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26408881 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0065;AVGPOST=0.9995;RSQ=0.9690;ERATE=0.0003;THETA=0.0012;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26408894 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0052;AVGPOST=0.9993;RSQ=0.9389;ERATE=0.0004;THETA=0.0014;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26409126 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1166;AVGPOST=0.9993;RSQ=0.9968;ERATE=0.0004;THETA=0.0013;AC=254;AN=2184 GT:DS:GL:BD 0.11630037 0 1 26409148 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0084;AVGPOST=0.9995;RSQ=0.9753;ERATE=0.0003;THETA=0.0026;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26409217 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.749;LDAF=0.0445;AVGPOST=0.9797;RSQ=0.8145;ERATE=0.0031;THETA=0.0006;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 26409225 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.881;LDAF=0.0698;AVGPOST=0.9696;RSQ=0.8254;ERATE=0.0073;THETA=0.0034;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 26409235 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.947;BRSQ=0.755;LDAF=0.1399;AVGPOST=0.9314;RSQ=0.7561;ERATE=0.0152;THETA=0.0008;AC=274;AN=2184 GT:DS:GL:BD 0.12545788 0 1 26409392 . TG T 54 PASS INDEL;BAVGPOST=0.978;BRSQ=0.440;LDAF=0.0266;AVGPOST=0.9674;RSQ=0.5280;ERATE=0.0041;THETA=0.0018;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 26409562 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8756;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26409586 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.0837;AVGPOST=0.9989;RSQ=0.9949;ERATE=0.0004;THETA=0.0006;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 26409593 . G GA 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6651;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26409657 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6875;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26409801 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1197;AVGPOST=0.9995;RSQ=0.9975;ERATE=0.0004;THETA=0.0006;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 26409851 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0102;AVGPOST=0.9993;RSQ=0.9695;ERATE=0.0003;THETA=0.0010;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26409903 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26409963 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6082;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26410052 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.801;LDAF=0.0051;AVGPOST=0.9982;RSQ=0.8661;ERATE=0.0003;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26410161 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1205;AVGPOST=0.9995;RSQ=0.9978;ERATE=0.0004;THETA=0.0010;AC=263;AN=2184 GT:DS:GL:BD 0.12042125 0 1 26410223 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7775;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26410322 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.853;LDAF=0.0032;AVGPOST=0.9989;RSQ=0.8490;ERATE=0.0012;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26410351 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.985;LDAF=0.0903;AVGPOST=0.9975;RSQ=0.9888;ERATE=0.0004;THETA=0.0007;AC=196;AN=2184 GT:DS:GL:BD 0.08974359 0 1 26410398 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26410443 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.8628;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26410494 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.0385;AVGPOST=0.9998;RSQ=0.9977;ERATE=0.0004;THETA=0.0006;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 26410597 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.679;LDAF=0.0026;AVGPOST=0.9982;RSQ=0.7496;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26410674 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0004;AVGPOST=0.9992;RSQ=0.2637;ERATE=0.0003;THETA=0.0009;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26410771 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.714;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7406;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26410786 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0073;AVGPOST=0.9986;RSQ=0.9294;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26410789 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0430;AVGPOST=0.9995;RSQ=0.9952;ERATE=0.0003;THETA=0.0015;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 26410863 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.715;LDAF=0.0025;AVGPOST=0.9978;RSQ=0.6241;ERATE=0.0005;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26410908 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0056;AVGPOST=0.9997;RSQ=0.9730;ERATE=0.0003;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26410988 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0059;AVGPOST=0.9995;RSQ=0.9657;ERATE=0.0004;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26411006 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26411109 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1199;AVGPOST=0.9997;RSQ=0.9985;ERATE=0.0003;THETA=0.0014;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 26411204 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.722;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.3800;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26411239 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.731;LDAF=0.0022;AVGPOST=0.9980;RSQ=0.6014;ERATE=0.0004;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26411265 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8803;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26411275 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1198;AVGPOST=0.9996;RSQ=0.9983;ERATE=0.0003;THETA=0.0004;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 26411348 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7306;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26411442 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5715;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26411483 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.893;LDAF=0.0288;AVGPOST=0.9936;RSQ=0.9139;ERATE=0.0008;THETA=0.0008;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 26411604 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0819;AVGPOST=0.9992;RSQ=0.9959;ERATE=0.0005;THETA=0.0005;AC=179;AN=2184 GT:DS:GL:BD 0.08195971 0 1 26411629 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5617;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26411638 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0104;AVGPOST=0.9991;RSQ=0.9705;ERATE=0.0003;THETA=0.0008;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26411650 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5828;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26411760 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26411807 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26411918 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2045;AVGPOST=0.9992;RSQ=0.9980;ERATE=0.0004;THETA=0.0006;AC=446;AN=2184 GT:DS:GL:BD 0.20421246 0 1 26411920 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26411971 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2039;AVGPOST=0.9981;RSQ=0.9960;ERATE=0.0005;THETA=0.0007;AC=444;AN=2184 GT:DS:GL:BD 0.20329671 0 1 26412021 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.907;LDAF=0.0197;AVGPOST=0.9971;RSQ=0.9364;ERATE=0.0006;THETA=0.0006;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 26412037 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26412169 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0804;AVGPOST=0.9992;RSQ=0.9959;ERATE=0.0004;THETA=0.0006;AC=176;AN=2184 GT:DS:GL:BD 0.08058608 0 1 26412198 . GT G 13 PASS INDEL;BAVGPOST=0.995;BRSQ=0.539;LDAF=0.0048;AVGPOST=0.9946;RSQ=0.5586;ERATE=0.0014;THETA=0.0020;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26412199 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2044;AVGPOST=0.9987;RSQ=0.9967;ERATE=0.0006;THETA=0.0006;AC=446;AN=2184 GT:DS:GL:BD 0.20421246 0 1 26412241 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0385;AVGPOST=0.9998;RSQ=0.9977;ERATE=0.0003;THETA=0.0008;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 26412303 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8521;ERATE=0.0003;THETA=0.0025;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26412435 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4333;ERATE=0.0005;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26412684 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.944;LDAF=0.1752;AVGPOST=0.9766;RSQ=0.9419;ERATE=0.0127;THETA=0.0011;AC=382;AN=2184 GT:DS:GL:BD 0.17490843 0 1 26412874 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8519;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26413058 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7682;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26413137 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4880;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26413349 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26413407 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6397;ERATE=0.0006;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26413416 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0049;AVGPOST=0.9990;RSQ=0.9288;ERATE=0.0005;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26413445 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6046;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26413496 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8118;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26413864 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0062;AVGPOST=0.9950;RSQ=0.7095;ERATE=0.0005;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26413905 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.680;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5763;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26413945 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0104;AVGPOST=0.9992;RSQ=0.9688;ERATE=0.0003;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26413979 . TC T 123 PASS INDEL;BAVGPOST=0.998;BRSQ=0.662;LDAF=0.0032;AVGPOST=0.9979;RSQ=0.7369;ERATE=0.0009;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26414082 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.6990;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26414197 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.895;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8442;ERATE=0.0005;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26414216 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.601;LDAF=0.0163;AVGPOST=0.9868;RSQ=0.6728;ERATE=0.0023;THETA=0.0012;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26414274 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.987;LDAF=0.0885;AVGPOST=0.9984;RSQ=0.9930;ERATE=0.0005;THETA=0.0013;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 26414297 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.621;LDAF=0.0029;AVGPOST=0.9975;RSQ=0.6544;ERATE=0.0005;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26414347 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0389;AVGPOST=0.9987;RSQ=0.9884;ERATE=0.0004;THETA=0.0006;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 26414382 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26414443 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5838;ERATE=0.0005;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26414535 . C CA 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0026;AVGPOST=0.9973;RSQ=0.5592;ERATE=0.0004;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26414537 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.580;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5212;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26414575 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6426;ERATE=0.0004;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26414589 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0389;AVGPOST=0.9979;RSQ=0.9795;ERATE=0.0003;THETA=0.0008;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 26414792 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7425;ERATE=0.0004;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26414793 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7033;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26414799 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0052;AVGPOST=0.9997;RSQ=0.9704;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26414844 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.885;LDAF=0.0216;AVGPOST=0.9907;RSQ=0.8391;ERATE=0.0007;THETA=0.0006;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 26414862 rs113025549 A AAC 637 PASS INDEL;BAVGPOST=0.952;BRSQ=0.579;LDAF=0.0795;AVGPOST=0.9383;RSQ=0.6735;ERATE=0.0091;THETA=0.0009;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 26414881 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.929;LDAF=0.0468;AVGPOST=0.9913;RSQ=0.9221;ERATE=0.0014;THETA=0.0014;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 26414899 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0102;AVGPOST=0.9989;RSQ=0.9603;ERATE=0.0003;THETA=0.0012;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26414906 . ATG A 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0019;AVGPOST=0.9977;RSQ=0.5149;ERATE=0.0004;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26415020 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.796;LDAF=0.0072;AVGPOST=0.9973;RSQ=0.8371;ERATE=0.0006;THETA=0.0036;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26415144 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0151;AVGPOST=0.9988;RSQ=0.9643;ERATE=0.0004;THETA=0.0050;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26415342 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.557;LDAF=0.0021;AVGPOST=0.9978;RSQ=0.5427;ERATE=0.0005;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26415398 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.612;LDAF=0.0043;AVGPOST=0.9962;RSQ=0.6356;ERATE=0.0005;THETA=0.0018;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26415506 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9755;ERATE=0.0004;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26415949 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26415967 . A AT 218 PASS INDEL;BAVGPOST=0.966;BRSQ=0.518;LDAF=0.0598;AVGPOST=0.9289;RSQ=0.4654;ERATE=0.0198;THETA=0.0005;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 26416121 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26416203 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.2035;AVGPOST=0.9943;RSQ=0.9875;ERATE=0.0006;THETA=0.0012;AC=445;AN=2184 GT:DS:GL:BD 0.20375457 0 1 26416248 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7497;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26416297 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0064;AVGPOST=0.9994;RSQ=0.9577;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26416376 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1096;AVGPOST=0.9971;RSQ=0.9889;ERATE=0.0004;THETA=0.0023;AC=237;AN=2184 GT:DS:GL:BD 0.10851648 0 1 26416386 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9343;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26416392 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8782;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26416438 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.950;LDAF=0.0184;AVGPOST=0.9975;RSQ=0.9518;ERATE=0.0005;THETA=0.0007;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 26416449 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.2037;AVGPOST=0.9968;RSQ=0.9924;ERATE=0.0005;THETA=0.0016;AC=446;AN=2184 GT:DS:GL:BD 0.20421246 0 1 26416537 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.641;LDAF=0.0072;AVGPOST=0.9921;RSQ=0.5879;ERATE=0.0009;THETA=0.0015;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26416579 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.633;LDAF=0.0112;AVGPOST=0.9902;RSQ=0.6480;ERATE=0.0008;THETA=0.0012;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26416647 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.936;LDAF=0.2072;AVGPOST=0.9617;RSQ=0.9139;ERATE=0.0047;THETA=0.0009;AC=445;AN=2184 GT:DS:GL:BD 0.20375457 0 1 26416699 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0049;AVGPOST=0.9972;RSQ=0.7452;ERATE=0.0008;THETA=0.0032;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26416780 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5851;ERATE=0.0003;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26416784 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.749;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26416845 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4410;ERATE=0.0004;THETA=0.0041;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26416869 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5936;ERATE=0.0005;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26416924 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.1154;AVGPOST=0.9955;RSQ=0.9820;ERATE=0.0006;THETA=0.0054;AC=250;AN=2184 GT:DS:GL:BD 0.11446887 0 1 26416951 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5467;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26417003 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0026;AVGPOST=0.9991;RSQ=0.8466;ERATE=0.0005;THETA=0.0085;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26417056 . CAAACA C 1619 PASS INDEL;BAVGPOST=0.995;BRSQ=0.882;LDAF=0.0197;AVGPOST=0.9936;RSQ=0.8764;ERATE=0.0015;THETA=0.0012;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 26417101 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.728;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5845;ERATE=0.0006;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26417180 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26417200 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26417214 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.698;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.5487;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26417392 . CT C 87 PASS INDEL;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6283;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26417396 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5914;ERATE=0.0003;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26417607 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0203;AVGPOST=0.9995;RSQ=0.9880;ERATE=0.0004;THETA=0.0005;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 26417663 . AAAG A 198 PASS INDEL;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0026;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26417689 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.693;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7012;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26417792 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.844;LDAF=0.0037;AVGPOST=0.9992;RSQ=0.9037;ERATE=0.0004;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26417810 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0117;AVGPOST=0.9987;RSQ=0.9600;ERATE=0.0004;THETA=0.0017;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26417830 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26417917 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0749;AVGPOST=0.9932;RSQ=0.9661;ERATE=0.0015;THETA=0.0013;AC=162;AN=2184 GT:DS:GL:BD 0.07417583 0 1 26418031 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0023;AVGPOST=0.9979;RSQ=0.6534;ERATE=0.0007;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26418326 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26418378 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5914;ERATE=0.0005;THETA=0.0038;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26418470 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7677;ERATE=0.0005;THETA=0.0030;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26418636 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26418645 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.863;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0022;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26418765 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0197;AVGPOST=0.9996;RSQ=0.9907;ERATE=0.0003;THETA=0.0013;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 26418818 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6008;ERATE=0.0005;THETA=0.0049;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26418899 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.6274;ERATE=0.0005;THETA=0.0024;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26419005 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6910;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26419042 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.1131;AVGPOST=0.9987;RSQ=0.9952;ERATE=0.0004;THETA=0.0011;AC=247;AN=2184 GT:DS:GL:BD 0.11309524 0 1 26419105 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26419182 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0024;AVGPOST=0.9985;RSQ=0.7383;ERATE=0.0005;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26419210 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1135;AVGPOST=0.9989;RSQ=0.9962;ERATE=0.0003;THETA=0.0009;AC=248;AN=2184 GT:DS:GL:BD 0.11355311 0 1 26419304 rs56674216 G GA 7958 PASS INDEL;BAVGPOST=0.995;BRSQ=0.986;LDAF=0.1128;AVGPOST=0.9968;RSQ=0.9893;ERATE=0.0005;THETA=0.0008;AC=247;AN=2184 GT:DS:GL:BD 0.11309524 0 1 26419344 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.3950;ERATE=0.0006;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26419353 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.980;LDAF=0.1138;AVGPOST=0.9959;RSQ=0.9868;ERATE=0.0007;THETA=0.0027;AC=251;AN=2184 GT:DS:GL:BD 0.11492674 0 1 26419407 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0171;AVGPOST=0.9987;RSQ=0.9695;ERATE=0.0005;THETA=0.0010;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 26419430 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.646;LDAF=0.0080;AVGPOST=0.9955;RSQ=0.7975;ERATE=0.0007;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26419459 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.712;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5608;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26419511 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9573;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26419613 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8962;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26419959 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.658;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4701;ERATE=0.0006;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26419960 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.961;LDAF=0.2593;AVGPOST=0.9902;RSQ=0.9824;ERATE=0.0009;THETA=0.0009;AC=568;AN=2184 GT:DS:GL:BD 0.26007327 0 1 26420113 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.973;LDAF=0.1121;AVGPOST=0.9987;RSQ=0.9948;ERATE=0.0005;THETA=0.0009;AC=246;AN=2184 GT:DS:GL:BD 0.11263736 0 1 26420193 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26420294 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9677;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26420335 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5595;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26420373 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0152;AVGPOST=0.9995;RSQ=0.9865;ERATE=0.0003;THETA=0.0008;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26420429 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9359;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26420508 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26420509 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26420534 . TC T 324 PASS INDEL;BAVGPOST=0.999;BRSQ=0.853;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8915;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26420558 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0279;AVGPOST=0.9993;RSQ=0.9901;ERATE=0.0003;THETA=0.0008;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 26420569 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8366;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26420600 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1141;AVGPOST=0.9989;RSQ=0.9959;ERATE=0.0004;THETA=0.0007;AC=249;AN=2184 GT:DS:GL:BD 0.11401099 0 1 26420674 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.771;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7550;ERATE=0.0006;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26420736 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.865;LDAF=0.0079;AVGPOST=0.9972;RSQ=0.8552;ERATE=0.0004;THETA=0.0013;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26420881 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6695;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26421012 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.982;LDAF=0.1028;AVGPOST=0.9961;RSQ=0.9838;ERATE=0.0004;THETA=0.0007;AC=225;AN=2184 GT:DS:GL:BD 0.10302198 0 1 26421065 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5933;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26421121 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26421218 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.7285;ERATE=0.0003;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26421286 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0144;AVGPOST=0.9992;RSQ=0.9741;ERATE=0.0004;THETA=0.0015;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 26421298 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0132;AVGPOST=0.9992;RSQ=0.9773;ERATE=0.0003;THETA=0.0007;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26421329 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6839;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26421409 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0324;AVGPOST=0.9993;RSQ=0.9910;ERATE=0.0003;THETA=0.0014;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 26421423 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0165;AVGPOST=0.9998;RSQ=0.9954;ERATE=0.0003;THETA=0.0007;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 26421492 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.709;LDAF=0.0022;AVGPOST=0.9989;RSQ=0.7644;ERATE=0.0005;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26421535 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0041;AVGPOST=0.9963;RSQ=0.6398;ERATE=0.0009;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26421743 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.688;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6471;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26421769 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0056;AVGPOST=0.9996;RSQ=0.9666;ERATE=0.0003;THETA=0.0010;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26421773 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6702;ERATE=0.0008;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26421884 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.635;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.4138;ERATE=0.0005;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26422081 . TCA T 74 PASS INDEL;BAVGPOST=0.999;BRSQ=0.552;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4746;ERATE=0.0004;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26422261 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.739;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5934;ERATE=0.0007;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26422639 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0282;AVGPOST=0.9991;RSQ=0.9875;ERATE=0.0003;THETA=0.0005;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 26422646 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0655;AVGPOST=0.9984;RSQ=0.9912;ERATE=0.0004;THETA=0.0031;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 26422818 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.654;LDAF=0.0140;AVGPOST=0.9924;RSQ=0.7802;ERATE=0.0007;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26422842 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0047;AVGPOST=0.9927;RSQ=0.4312;ERATE=0.0007;THETA=0.0023;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26422867 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.1152;AVGPOST=0.9966;RSQ=0.9881;ERATE=0.0007;THETA=0.0010;AC=251;AN=2184 GT:DS:GL:BD 0.11492674 0 1 26422877 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.744;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6906;ERATE=0.0004;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26422879 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.543;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8344;ERATE=0.0004;THETA=0.0037;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26422960 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0036;AVGPOST=0.9991;RSQ=0.8872;ERATE=0.0009;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26422976 . TAAC T 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6843;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26423169 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0027;AVGPOST=0.9995;RSQ=0.9125;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26423231 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0458;AVGPOST=0.9990;RSQ=0.9922;ERATE=0.0003;THETA=0.0014;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 26423325 . AT A 146 PASS INDEL;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8850;ERATE=0.0004;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26423541 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26423545 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26423547 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0139;AVGPOST=0.9978;RSQ=0.9385;ERATE=0.0007;THETA=0.0010;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26423571 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5640;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26423610 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.520;LDAF=0.0049;AVGPOST=0.9949;RSQ=0.6248;ERATE=0.0009;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26423646 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.735;LDAF=0.0266;AVGPOST=0.9745;RSQ=0.6187;ERATE=0.0052;THETA=0.0013;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 26423648 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.736;LDAF=0.0201;AVGPOST=0.9826;RSQ=0.6806;ERATE=0.0017;THETA=0.0014;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 26423716 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.729;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4987;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26423722 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0473;AVGPOST=0.9963;RSQ=0.9725;ERATE=0.0007;THETA=0.0007;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 26423747 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0049;AVGPOST=0.9959;RSQ=0.6860;ERATE=0.0008;THETA=0.0015;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26423811 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0033;AVGPOST=0.9990;RSQ=0.8858;ERATE=0.0004;THETA=0.0014;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26423844 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6383;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26423881 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7186;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26423894 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26423960 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5869;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26423994 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0622;AVGPOST=0.9983;RSQ=0.9904;ERATE=0.0004;THETA=0.0004;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 26424011 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9411;ERATE=0.0004;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26424013 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8835;ERATE=0.0003;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26424042 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0197;AVGPOST=0.9998;RSQ=0.9960;ERATE=0.0003;THETA=0.0010;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 26424250 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26424371 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26424468 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0316;AVGPOST=0.9992;RSQ=0.9893;ERATE=0.0004;THETA=0.0008;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 26424557 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.2405;ERATE=0.0003;THETA=0.0025;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26424582 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.739;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8411;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26424664 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7642;ERATE=0.0006;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26424693 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26424772 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0003;THETA=0.0014;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26424780 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26424814 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9190;ERATE=0.0004;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26424861 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0089;AVGPOST=0.9989;RSQ=0.9473;ERATE=0.0004;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26424921 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.688;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8945;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26425060 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.606;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6049;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26425266 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8728;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26425326 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0204;AVGPOST=0.9985;RSQ=0.9732;ERATE=0.0003;THETA=0.0009;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 26425367 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.737;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5073;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26425419 . AT A 89 PASS INDEL;BAVGPOST=0.954;BRSQ=0.353;LDAF=0.0620;AVGPOST=0.9128;RSQ=0.3861;ERATE=0.0165;THETA=0.0017;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 26425735 . GC G 6 PASS INDEL;BAVGPOST=0.999;BRSQ=0.478;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.4347;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26425761 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.955;LDAF=0.0702;AVGPOST=0.9862;RSQ=0.9261;ERATE=0.0043;THETA=0.0013;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 26425921 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.976;LDAF=0.0637;AVGPOST=0.9985;RSQ=0.9907;ERATE=0.0005;THETA=0.0003;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 26426004 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.0652;AVGPOST=0.9991;RSQ=0.9950;ERATE=0.0004;THETA=0.0039;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 26426051 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0047;AVGPOST=0.9984;RSQ=0.8432;ERATE=0.0006;THETA=0.0022;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26426064 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.971;LDAF=0.0498;AVGPOST=0.9946;RSQ=0.9615;ERATE=0.0012;THETA=0.0012;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 26426349 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26426479 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0036;AVGPOST=0.9986;RSQ=0.8276;ERATE=0.0005;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26426577 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5980;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26426631 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0041;AVGPOST=0.9997;RSQ=0.9698;ERATE=0.0003;THETA=0.0014;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26426719 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.963;LDAF=0.0354;AVGPOST=0.9944;RSQ=0.9403;ERATE=0.0004;THETA=0.0055;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 26426782 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6037;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26426984 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.882;LDAF=0.0138;AVGPOST=0.9981;RSQ=0.9362;ERATE=0.0004;THETA=0.0015;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26427008 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0117;AVGPOST=0.9989;RSQ=0.9570;ERATE=0.0004;THETA=0.0016;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26427055 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.958;LDAF=0.5940;AVGPOST=0.9597;RSQ=0.9446;ERATE=0.0008;THETA=0.0005;AC=1309;AN=2184 GT:DS:GL:BD 0.59935898 1 1 26427064 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.953;LDAF=0.1120;AVGPOST=0.9943;RSQ=0.9769;ERATE=0.0005;THETA=0.0010;AC=245;AN=2184 GT:DS:GL:BD 0.11217949 0 1 26427077 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0333;AVGPOST=0.9987;RSQ=0.9850;ERATE=0.0005;THETA=0.0011;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 26427134 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0023;AVGPOST=0.9977;RSQ=0.6209;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26427164 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0130;AVGPOST=0.9967;RSQ=0.8997;ERATE=0.0006;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26427183 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.6003;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26427451 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0035;AVGPOST=0.9981;RSQ=0.7676;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26427606 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.5455;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26427660 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0029;AVGPOST=0.9994;RSQ=0.8962;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26427662 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0333;AVGPOST=0.9988;RSQ=0.9899;ERATE=0.0003;THETA=0.0015;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 26427703 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9303;ERATE=0.0004;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26427713 rs58999632 T TA 1507 PASS INDEL;BAVGPOST=0.471;BRSQ=0.115;LDAF=0.5626;AVGPOST=0.6138;RSQ=0.2973;ERATE=0.0351;THETA=0.0010;AC=1313;AN=2184 GT:DS:GL:BD 0.60119045 1 1 26427758 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.846;LDAF=0.0294;AVGPOST=0.9950;RSQ=0.9356;ERATE=0.0007;THETA=0.0004;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 26427874 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.848;LDAF=0.0062;AVGPOST=0.9947;RSQ=0.6657;ERATE=0.0008;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26427911 . AG A 1041 PASS INDEL;BAVGPOST=0.997;BRSQ=0.881;LDAF=0.0104;AVGPOST=0.9932;RSQ=0.7483;ERATE=0.0005;THETA=0.0021;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26427915 . GT G 187 PASS INDEL;BAVGPOST=0.997;BRSQ=0.881;LDAF=0.0111;AVGPOST=0.9917;RSQ=0.7053;ERATE=0.0011;THETA=0.0010;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26428196 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0022;AVGPOST=0.9986;RSQ=0.7373;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26428301 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0028;AVGPOST=0.9995;RSQ=0.9266;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26428395 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.708;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4892;ERATE=0.0007;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26428529 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7509;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26428580 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26428668 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0348;AVGPOST=0.9989;RSQ=0.9888;ERATE=0.0003;THETA=0.0006;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 26428822 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26428857 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8771;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26428864 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2012;AVGPOST=0.9980;RSQ=0.9956;ERATE=0.0008;THETA=0.0016;AC=440;AN=2184 GT:DS:GL:BD 0.20146520 0 1 26429065 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6907;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26429255 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0030;AVGPOST=0.9990;RSQ=0.8590;ERATE=0.0008;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26429294 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26429308 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26429330 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0077;AVGPOST=0.9976;RSQ=0.8728;ERATE=0.0004;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26429344 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2280;AVGPOST=0.9966;RSQ=0.9940;ERATE=0.0004;THETA=0.0009;AC=497;AN=2184 GT:DS:GL:BD 0.22756410 0 1 26429351 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1935;AVGPOST=0.9958;RSQ=0.9910;ERATE=0.0003;THETA=0.0007;AC=422;AN=2184 GT:DS:GL:BD 0.19322345 0 1 26429356 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1549;AVGPOST=0.9955;RSQ=0.9881;ERATE=0.0005;THETA=0.0016;AC=336;AN=2184 GT:DS:GL:BD 0.15384616 0 1 26429437 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2005;AVGPOST=0.9987;RSQ=0.9973;ERATE=0.0004;THETA=0.0002;AC=438;AN=2184 GT:DS:GL:BD 0.20054945 0 1 26429456 . AC A 1180 PASS INDEL;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0085;AVGPOST=0.9986;RSQ=0.9239;ERATE=0.0005;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26429492 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.966;LDAF=0.0984;AVGPOST=0.9968;RSQ=0.9876;ERATE=0.0003;THETA=0.0010;AC=214;AN=2184 GT:DS:GL:BD 0.09798535 0 1 26429674 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0198;AVGPOST=0.9996;RSQ=0.9914;ERATE=0.0003;THETA=0.0005;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 26429701 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0343;AVGPOST=0.9993;RSQ=0.9926;ERATE=0.0004;THETA=0.0010;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 26429844 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1158;AVGPOST=0.9995;RSQ=0.9982;ERATE=0.0003;THETA=0.0048;AC=252;AN=2184 GT:DS:GL:BD 0.11538462 0 1 26429878 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.921;LDAF=0.0859;AVGPOST=0.9848;RSQ=0.9277;ERATE=0.0009;THETA=0.0005;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 26429898 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1168;AVGPOST=0.9982;RSQ=0.9924;ERATE=0.0006;THETA=0.0004;AC=253;AN=2184 GT:DS:GL:BD 0.11584249 0 1 26430054 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.981;LDAF=0.1662;AVGPOST=0.9912;RSQ=0.9747;ERATE=0.0021;THETA=0.0009;AC=361;AN=2184 GT:DS:GL:BD 0.16529304 0 1 26430068 . CA C 4 PASS INDEL;BAVGPOST=0.999;BRSQ=0.595;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.5600;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26430117 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0030;AVGPOST=0.9993;RSQ=0.8895;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26430157 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7355;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26430379 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1160;AVGPOST=0.9987;RSQ=0.9941;ERATE=0.0005;THETA=0.0005;AC=252;AN=2184 GT:DS:GL:BD 0.11538462 0 1 26430428 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.871;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7854;ERATE=0.0008;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26430447 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1664;AVGPOST=0.9994;RSQ=0.9982;ERATE=0.0005;THETA=0.0008;AC=363;AN=2184 GT:DS:GL:BD 0.16620879 0 1 26430465 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26430501 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2007;AVGPOST=0.9987;RSQ=0.9969;ERATE=0.0005;THETA=0.0007;AC=438;AN=2184 GT:DS:GL:BD 0.20054945 0 1 26430618 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7795;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26430655 . AAC A 82 PASS INDEL;BAVGPOST=0.984;BRSQ=0.577;LDAF=0.0274;AVGPOST=0.9691;RSQ=0.5183;ERATE=0.0100;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26430661 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26430815 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5369;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26430822 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.1665;AVGPOST=0.9990;RSQ=0.9968;ERATE=0.0005;THETA=0.0006;AC=363;AN=2184 GT:DS:GL:BD 0.16620879 0 1 26430889 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.597;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4166;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26430890 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.791;LDAF=0.0272;AVGPOST=0.9819;RSQ=0.7191;ERATE=0.0062;THETA=0.0007;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 26430961 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.877;LDAF=0.1945;AVGPOST=0.9308;RSQ=0.8287;ERATE=0.0188;THETA=0.0006;AC=390;AN=2184 GT:DS:GL:BD 0.17857143 0 1 26431024 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0125;AVGPOST=0.9996;RSQ=0.9863;ERATE=0.0003;THETA=0.0012;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26431118 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.803;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8814;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26431234 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0197;AVGPOST=0.9999;RSQ=0.9978;ERATE=0.0003;THETA=0.0004;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 26431239 . GTATT G 69 PASS INDEL;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0016;AVGPOST=0.9976;RSQ=0.3923;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26431337 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1975;AVGPOST=0.9989;RSQ=0.9974;ERATE=0.0005;THETA=0.0011;AC=431;AN=2184 GT:DS:GL:BD 0.19734432 0 1 26431338 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8078;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26431425 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0133;AVGPOST=0.9997;RSQ=0.9901;ERATE=0.0003;THETA=0.0009;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26431436 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26431583 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5240;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26431633 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6037;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26431849 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8664;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26431869 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26431931 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.1365;AVGPOST=0.9988;RSQ=0.9954;ERATE=0.0004;THETA=0.0022;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 26431946 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5421;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26431952 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5394;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26431958 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.972;LDAF=0.6008;AVGPOST=0.9701;RSQ=0.9588;ERATE=0.0009;THETA=0.0006;AC=1318;AN=2184 GT:DS:GL:BD 0.60347986 1 1 26432008 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.529;LDAF=0.0220;AVGPOST=0.9751;RSQ=0.5533;ERATE=0.0057;THETA=0.0006;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26432057 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0020;AVGPOST=0.9980;RSQ=0.5879;ERATE=0.0007;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26432066 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0027;AVGPOST=0.9966;RSQ=0.5618;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26432112 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7565;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26432121 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.949;LDAF=0.2369;AVGPOST=0.9861;RSQ=0.9749;ERATE=0.0009;THETA=0.0013;AC=523;AN=2184 GT:DS:GL:BD 0.23946886 0 1 26432239 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.972;LDAF=0.1334;AVGPOST=0.9950;RSQ=0.9843;ERATE=0.0004;THETA=0.0008;AC=294;AN=2184 GT:DS:GL:BD 0.13461539 0 1 26432246 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.972;LDAF=0.1338;AVGPOST=0.9949;RSQ=0.9839;ERATE=0.0004;THETA=0.0004;AC=294;AN=2184 GT:DS:GL:BD 0.13461539 0 1 26432303 . TTC T 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6584;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26432312 . C CT 197 PASS INDEL;BAVGPOST=0.999;BRSQ=0.752;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6340;ERATE=0.0007;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26432370 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.784;LDAF=0.0490;AVGPOST=0.9791;RSQ=0.8466;ERATE=0.0006;THETA=0.0016;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 26432460 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.973;LDAF=0.1365;AVGPOST=0.9978;RSQ=0.9915;ERATE=0.0006;THETA=0.0046;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 26432555 . AAG A 6 PASS INDEL;BAVGPOST=0.999;BRSQ=0.713;LDAF=0.0036;AVGPOST=0.9972;RSQ=0.6806;ERATE=0.0008;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26432610 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26432655 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8482;ERATE=0.0004;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26432719 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1336;AVGPOST=0.9991;RSQ=0.9967;ERATE=0.0004;THETA=0.0005;AC=291;AN=2184 GT:DS:GL:BD 0.13324176 0 1 26432843 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26433098 . TTTTA T 147 PASS INDEL;BAVGPOST=0.929;BRSQ=0.473;LDAF=0.0655;AVGPOST=0.9511;RSQ=0.7250;ERATE=0.0010;THETA=0.0025;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 26433173 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.739;LDAF=0.0078;AVGPOST=0.9932;RSQ=0.6487;ERATE=0.0012;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26433330 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6105;ERATE=0.0004;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26433510 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.706;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5760;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26433730 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.957;LDAF=0.1359;AVGPOST=0.9932;RSQ=0.9773;ERATE=0.0010;THETA=0.0009;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 26433919 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0180;AVGPOST=0.9987;RSQ=0.9730;ERATE=0.0005;THETA=0.0011;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 26434139 . TC T 2368 PASS INDEL;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0137;AVGPOST=0.9983;RSQ=0.9554;ERATE=0.0005;THETA=0.0023;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26434305 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0117;AVGPOST=0.9992;RSQ=0.9665;ERATE=0.0005;THETA=0.0016;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26434332 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6180;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26434354 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.972;LDAF=0.1839;AVGPOST=0.9961;RSQ=0.9902;ERATE=0.0007;THETA=0.0012;AC=401;AN=2184 GT:DS:GL:BD 0.18360806 0 1 26434378 . AT A 646 PASS INDEL;BAVGPOST=0.846;BRSQ=0.345;LDAF=0.1805;AVGPOST=0.7846;RSQ=0.3980;ERATE=0.0235;THETA=0.0007;AC=220;AN=2184 GT:DS:GL:BD 0.10073260 0 1 26434379 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.928;BRSQ=0.755;LDAF=0.2014;AVGPOST=0.8710;RSQ=0.6576;ERATE=0.0298;THETA=0.0006;AC=362;AN=2184 GT:DS:GL:BD 0.16575092 0 1 26434407 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.616;LDAF=0.0068;AVGPOST=0.9891;RSQ=0.3086;ERATE=0.0017;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26434408 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.238;LDAF=0.0024;AVGPOST=0.9972;RSQ=0.4667;ERATE=0.0006;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26434437 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.747;LDAF=0.0054;AVGPOST=0.9913;RSQ=0.3184;ERATE=0.0023;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26434501 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.716;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.3452;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26434527 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.967;LDAF=0.2274;AVGPOST=0.9831;RSQ=0.9662;ERATE=0.0024;THETA=0.0005;AC=496;AN=2184 GT:DS:GL:BD 0.22710623 0 1 26434534 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.952;LDAF=0.0211;AVGPOST=0.9971;RSQ=0.9439;ERATE=0.0007;THETA=0.0008;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 26434538 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0030;AVGPOST=0.9976;RSQ=0.6448;ERATE=0.0009;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26434559 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0054;AVGPOST=0.9966;RSQ=0.7248;ERATE=0.0008;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26434564 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.487;LDAF=0.0049;AVGPOST=0.9920;RSQ=0.4540;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26434603 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.541;LDAF=0.0052;AVGPOST=0.9964;RSQ=0.7175;ERATE=0.0006;THETA=0.0056;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26434621 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.545;LDAF=0.0055;AVGPOST=0.9939;RSQ=0.5231;ERATE=0.0007;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26434756 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.674;LDAF=0.0084;AVGPOST=0.9932;RSQ=0.6650;ERATE=0.0009;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26435012 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.811;LDAF=0.0057;AVGPOST=0.9922;RSQ=0.4774;ERATE=0.0010;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26435038 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2018;AVGPOST=0.9886;RSQ=0.9751;ERATE=0.0021;THETA=0.0011;AC=439;AN=2184 GT:DS:GL:BD 0.20100732 0 1 26435219 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9009;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26435224 rs55806212 C CATTT 24085 PASS INDEL;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.1380;AVGPOST=0.9975;RSQ=0.9916;ERATE=0.0005;THETA=0.0007;AC=299;AN=2184 GT:DS:GL:BD 0.13690476 0 1 26435334 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5699;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26435487 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0032;AVGPOST=0.9994;RSQ=0.9195;ERATE=0.0004;THETA=0.0018;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26435519 . TTAA T 381 PASS INDEL;BAVGPOST=0.998;BRSQ=0.861;LDAF=0.0075;AVGPOST=0.9966;RSQ=0.8008;ERATE=0.0007;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26435657 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.702;LDAF=0.0105;AVGPOST=0.9942;RSQ=0.7890;ERATE=0.0004;THETA=0.0024;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26435796 . TAG T 65 PASS INDEL;BAVGPOST=0.999;BRSQ=0.674;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.6663;ERATE=0.0006;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26435880 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8381;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26435919 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1361;AVGPOST=0.9984;RSQ=0.9954;ERATE=0.0004;THETA=0.0009;AC=296;AN=2184 GT:DS:GL:BD 0.13553114 0 1 26435936 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.857;LDAF=0.0303;AVGPOST=0.9928;RSQ=0.9027;ERATE=0.0005;THETA=0.0004;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 26436056 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.791;LDAF=0.0090;AVGPOST=0.9979;RSQ=0.9071;ERATE=0.0004;THETA=0.0009;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26436073 . TTG T 26 PASS INDEL;BAVGPOST=0.994;BRSQ=0.587;LDAF=0.0103;AVGPOST=0.9879;RSQ=0.5122;ERATE=0.0056;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26436231 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1366;AVGPOST=0.9995;RSQ=0.9981;ERATE=0.0004;THETA=0.0012;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 26436329 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26436352 rs111986742 G GACATA 22850 PASS INDEL;BAVGPOST=0.986;BRSQ=0.944;LDAF=0.1354;AVGPOST=0.9967;RSQ=0.9883;ERATE=0.0005;THETA=0.0005;AC=296;AN=2184 GT:DS:GL:BD 0.13553114 0 1 26436664 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.910;LDAF=0.0044;AVGPOST=0.9994;RSQ=0.9391;ERATE=0.0004;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26436688 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1367;AVGPOST=0.9998;RSQ=0.9991;ERATE=0.0003;THETA=0.0013;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 26436734 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7452;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26436736 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8232;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26436856 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.6079;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26436858 . AC A 407 PASS INDEL;BAVGPOST=0.999;BRSQ=0.772;LDAF=0.0039;AVGPOST=0.9971;RSQ=0.6821;ERATE=0.0016;THETA=0.0014;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26437033 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5332;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26437056 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0066;AVGPOST=0.9977;RSQ=0.8825;ERATE=0.0003;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26437099 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6817;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26437102 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26437262 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1366;AVGPOST=0.9992;RSQ=0.9969;ERATE=0.0004;THETA=0.0006;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 26437325 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0025;AVGPOST=0.9990;RSQ=0.8446;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26437390 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0198;AVGPOST=0.9997;RSQ=0.9935;ERATE=0.0003;THETA=0.0014;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 26437398 . GAGAGCGGC G 798 PASS INDEL;BAVGPOST=0.994;BRSQ=0.786;LDAF=0.0187;AVGPOST=0.9958;RSQ=0.9101;ERATE=0.0006;THETA=0.0011;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 26437399 . AGAGCGGCAG A 1822 PASS INDEL;BAVGPOST=0.994;BRSQ=0.786;LDAF=0.0188;AVGPOST=0.9955;RSQ=0.9019;ERATE=0.0006;THETA=0.0027;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 26437486 . C CG 83 PASS INDEL;BAVGPOST=0.991;BRSQ=0.608;LDAF=0.0217;AVGPOST=0.9860;RSQ=0.7596;ERATE=0.0013;THETA=0.0005;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 26437498 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0329;AVGPOST=0.9766;RSQ=0.7366;ERATE=0.0020;THETA=0.0006;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 26437741 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.967;LDAF=0.1353;AVGPOST=0.9951;RSQ=0.9815;ERATE=0.0008;THETA=0.0005;AC=291;AN=2184 GT:DS:GL:BD 0.13324176 0 1 26438020 . CG C 144 PASS INDEL;BAVGPOST=0.983;BRSQ=0.515;LDAF=0.0256;AVGPOST=0.9808;RSQ=0.7092;ERATE=0.0013;THETA=0.0007;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 26438205 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.128;LDAF=0.0417;AVGPOST=0.9374;RSQ=0.3733;ERATE=0.0053;THETA=0.0008;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 26438222 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.325;LDAF=0.0205;AVGPOST=0.9704;RSQ=0.4046;ERATE=0.0015;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26438455 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.983;LDAF=0.2311;AVGPOST=0.9937;RSQ=0.9871;ERATE=0.0007;THETA=0.0005;AC=504;AN=2184 GT:DS:GL:BD 0.23076923 0 1 26438498 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.986;LDAF=0.1373;AVGPOST=0.9976;RSQ=0.9909;ERATE=0.0005;THETA=0.0008;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 26438505 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.691;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5163;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26438590 . G GGCCCTCA 204 PASS INDEL;BAVGPOST=0.999;BRSQ=0.401;LDAF=0.0058;AVGPOST=0.9941;RSQ=0.5648;ERATE=0.0006;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26438933 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1368;AVGPOST=0.9988;RSQ=0.9952;ERATE=0.0004;THETA=0.0007;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 26438935 . TCTC T 334 PASS INDEL;BAVGPOST=0.996;BRSQ=0.705;LDAF=0.0080;AVGPOST=0.9942;RSQ=0.7219;ERATE=0.0005;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26438966 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8940;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26439090 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.791;LDAF=0.0062;AVGPOST=0.9959;RSQ=0.7287;ERATE=0.0005;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26439226 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2569;AVGPOST=0.9977;RSQ=0.9960;ERATE=0.0005;THETA=0.0006;AC=561;AN=2184 GT:DS:GL:BD 0.25686812 0 1 26439255 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0056;AVGPOST=0.9993;RSQ=0.9492;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26439320 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9113;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26439325 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7393;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26439382 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0009;AVGPOST=0.9987;RSQ=0.3360;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26439531 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6952;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26439562 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0165;AVGPOST=0.9987;RSQ=0.9719;ERATE=0.0004;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 26439586 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1367;AVGPOST=0.9984;RSQ=0.9941;ERATE=0.0005;THETA=0.0028;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 26439825 rs111424181 CA C 1510 PASS INDEL;BAVGPOST=0.933;BRSQ=0.696;LDAF=0.0997;AVGPOST=0.9405;RSQ=0.7702;ERATE=0.0015;THETA=0.0006;AC=210;AN=2184 GT:DS:GL:BD 0.09615385 0 1 26439829 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.645;LDAF=0.0254;AVGPOST=0.9794;RSQ=0.6666;ERATE=0.0016;THETA=0.0006;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 26439974 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.414;LDAF=0.0029;AVGPOST=0.9951;RSQ=0.3571;ERATE=0.0008;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26439989 rs67443362 T TA 1251 PASS INDEL;BAVGPOST=0.523;BRSQ=0.149;LDAF=0.4145;AVGPOST=0.6070;RSQ=0.2713;ERATE=0.0396;THETA=0.0008;AC=703;AN=2184 GT:DS:GL:BD 0.32188645 0 1 26440129 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.954;LDAF=0.2521;AVGPOST=0.9675;RSQ=0.9467;ERATE=0.0012;THETA=0.0006;AC=539;AN=2184 GT:DS:GL:BD 0.24679486 0 1 26440174 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8864;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26440182 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0123;AVGPOST=0.9997;RSQ=0.9898;ERATE=0.0003;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26440237 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6616;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26440466 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26440520 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0031;AVGPOST=0.9990;RSQ=0.8678;ERATE=0.0003;THETA=0.0020;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26440561 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9809;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26440692 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0087;AVGPOST=0.9999;RSQ=0.9954;ERATE=0.0003;THETA=0.0026;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26440718 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1371;AVGPOST=0.9998;RSQ=0.9993;ERATE=0.0003;THETA=0.0008;AC=299;AN=2184 GT:DS:GL:BD 0.13690476 0 1 26440827 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26441207 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0129;AVGPOST=0.9997;RSQ=0.9929;ERATE=0.0004;THETA=0.0008;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26441399 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8841;ERATE=0.0006;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26441411 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7182;ERATE=0.0007;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26441492 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7731;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26441635 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7312;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26441638 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1344;AVGPOST=0.9991;RSQ=0.9967;ERATE=0.0004;THETA=0.0004;AC=293;AN=2184 GT:DS:GL:BD 0.13415751 0 1 26441652 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9416;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26441711 . AT A 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7793;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26441796 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0055;AVGPOST=0.9990;RSQ=0.9335;ERATE=0.0004;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26441839 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26441848 . CTT C 115 PASS INDEL;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5910;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26441964 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7891;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26441990 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7393;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26442002 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5351;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26442216 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.652;LDAF=0.0025;AVGPOST=0.9968;RSQ=0.5357;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26442224 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0145;AVGPOST=0.9960;RSQ=0.8805;ERATE=0.0008;THETA=0.0007;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26442250 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.567;LDAF=0.0180;AVGPOST=0.9817;RSQ=0.5802;ERATE=0.0013;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26442272 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.978;LDAF=0.1375;AVGPOST=0.9979;RSQ=0.9922;ERATE=0.0006;THETA=0.0010;AC=299;AN=2184 GT:DS:GL:BD 0.13690476 0 1 26442437 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5571;ERATE=0.0006;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26442600 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.1369;AVGPOST=0.9974;RSQ=0.9910;ERATE=0.0007;THETA=0.0019;AC=299;AN=2184 GT:DS:GL:BD 0.13690476 0 1 26442704 . A AC 1969 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0171;AVGPOST=0.9988;RSQ=0.9714;ERATE=0.0004;THETA=0.0011;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 26442736 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0193;AVGPOST=0.9997;RSQ=0.9933;ERATE=0.0003;THETA=0.0009;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 26442758 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0074;AVGPOST=0.9990;RSQ=0.9414;ERATE=0.0003;THETA=0.0014;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26442991 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0024;AVGPOST=0.9982;RSQ=0.6875;ERATE=0.0005;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26443000 . TC T 374 PASS INDEL;BAVGPOST=0.999;BRSQ=0.801;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8743;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26443123 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0025;AVGPOST=0.9983;RSQ=0.7708;ERATE=0.0006;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26443299 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.337;LDAF=0.0029;AVGPOST=0.9984;RSQ=0.7462;ERATE=0.0005;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26443506 rs60381058 C CT 750 PASS INDEL;BAVGPOST=0.477;BRSQ=0.105;LDAF=0.4769;AVGPOST=0.6254;RSQ=0.3357;ERATE=0.0216;THETA=0.0011;AC=979;AN=2184 GT:DS:GL:BD 0.44826007 0 1 26443545 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0059;AVGPOST=0.9938;RSQ=0.5781;ERATE=0.0011;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26443824 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0414;AVGPOST=0.9981;RSQ=0.9818;ERATE=0.0003;THETA=0.0008;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 26443908 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1343;AVGPOST=0.9989;RSQ=0.9959;ERATE=0.0004;THETA=0.0026;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 26444109 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9208;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26444158 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.893;LDAF=0.0044;AVGPOST=0.9973;RSQ=0.7293;ERATE=0.0006;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26444189 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0023;AVGPOST=0.9992;RSQ=0.8702;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26444221 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.954;LDAF=0.0168;AVGPOST=0.9994;RSQ=0.9859;ERATE=0.0003;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 26444234 . CAAAACA C 477 PASS INDEL;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0048;AVGPOST=0.9975;RSQ=0.7597;ERATE=0.0007;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26444306 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.817;LDAF=0.0058;AVGPOST=0.9982;RSQ=0.8699;ERATE=0.0005;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26444339 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.834;LDAF=0.0027;AVGPOST=0.9974;RSQ=0.6498;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26444367 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1375;AVGPOST=0.9983;RSQ=0.9947;ERATE=0.0004;THETA=0.0010;AC=299;AN=2184 GT:DS:GL:BD 0.13690476 0 1 26444475 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4905;ERATE=0.0005;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26444483 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.646;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6040;ERATE=0.0005;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26444587 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26444590 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0292;AVGPOST=0.9973;RSQ=0.9664;ERATE=0.0004;THETA=0.0009;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 26444713 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0194;AVGPOST=0.9997;RSQ=0.9922;ERATE=0.0004;THETA=0.0007;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 26444880 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0064;AVGPOST=0.9973;RSQ=0.8462;ERATE=0.0005;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26445161 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.651;LDAF=0.0024;AVGPOST=0.9978;RSQ=0.6558;ERATE=0.0005;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26445308 . A AC 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5179;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26445477 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26445504 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1681;AVGPOST=0.9981;RSQ=0.9955;ERATE=0.0003;THETA=0.0011;AC=365;AN=2184 GT:DS:GL:BD 0.16712454 0 1 26445506 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9998;RSQ=0.9668;ERATE=0.0003;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26445558 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0169;AVGPOST=0.9991;RSQ=0.9784;ERATE=0.0004;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 26445609 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7059;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26445646 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26445709 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7905;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26445757 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4979;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26445839 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.588;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.3993;ERATE=0.0004;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26445915 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.954;BRSQ=0.838;LDAF=0.1689;AVGPOST=0.9410;RSQ=0.8345;ERATE=0.0288;THETA=0.0036;AC=342;AN=2184 GT:DS:GL:BD 0.15659341 0 1 26446186 . C CA 1060 PASS INDEL;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0151;AVGPOST=0.9973;RSQ=0.9304;ERATE=0.0004;THETA=0.0008;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 26446227 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.728;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.5949;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26446296 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0128;AVGPOST=0.9991;RSQ=0.9704;ERATE=0.0004;THETA=0.0007;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26446306 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.709;LDAF=0.0127;AVGPOST=0.9940;RSQ=0.8242;ERATE=0.0007;THETA=0.0008;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26446348 . C CA 97 PASS INDEL;BAVGPOST=0.988;BRSQ=0.589;LDAF=0.0093;AVGPOST=0.9907;RSQ=0.6284;ERATE=0.0008;THETA=0.0010;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26446350 . AT A 1296 PASS INDEL;BAVGPOST=0.942;BRSQ=0.720;LDAF=0.1104;AVGPOST=0.9615;RSQ=0.8681;ERATE=0.0008;THETA=0.0008;AC=243;AN=2184 GT:DS:GL:BD 0.11126374 0 1 26446351 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.930;LDAF=0.1413;AVGPOST=0.9821;RSQ=0.9446;ERATE=0.0035;THETA=0.0006;AC=305;AN=2184 GT:DS:GL:BD 0.13965201 0 1 26446429 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0023;AVGPOST=0.9980;RSQ=0.6740;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26446565 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1369;AVGPOST=0.9987;RSQ=0.9955;ERATE=0.0003;THETA=0.0009;AC=299;AN=2184 GT:DS:GL:BD 0.13690476 0 1 26446588 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.961;LDAF=0.9790;AVGPOST=0.9972;RSQ=0.9472;ERATE=0.0004;THETA=0.0005;AC=2139;AN=2184 GT:DS:GL:BD 0.97939563 1 1 26446595 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5922;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26446617 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.726;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6107;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26446618 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0028;AVGPOST=0.9980;RSQ=0.7263;ERATE=0.0018;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26446703 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0003;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26446760 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0147;AVGPOST=0.9992;RSQ=0.9751;ERATE=0.0004;THETA=0.0015;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 26446862 . TTA T 12558 PASS INDEL;BAVGPOST=0.992;BRSQ=0.968;LDAF=0.1346;AVGPOST=0.9967;RSQ=0.9888;ERATE=0.0005;THETA=0.0004;AC=293;AN=2184 GT:DS:GL:BD 0.13415751 0 1 26446880 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.840;LDAF=0.0149;AVGPOST=0.9948;RSQ=0.8739;ERATE=0.0004;THETA=0.0006;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26446886 rs11301573 AT A 24992 PASS INDEL;BAVGPOST=0.992;BRSQ=0.984;LDAF=0.2439;AVGPOST=0.9934;RSQ=0.9876;ERATE=0.0011;THETA=0.0007;AC=535;AN=2184 GT:DS:GL:BD 0.24496336 0 1 26446906 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.6463;ERATE=0.0007;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26446940 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0122;AVGPOST=0.9993;RSQ=0.9772;ERATE=0.0003;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26446955 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7298;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26446998 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0037;AVGPOST=0.9995;RSQ=0.9409;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26447011 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26447077 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0069;AVGPOST=0.9989;RSQ=0.9355;ERATE=0.0004;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26447152 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.4603;ERATE=0.0005;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26447161 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0018;AVGPOST=0.9995;RSQ=0.8803;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26447163 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6596;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26447166 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0019;AVGPOST=0.9992;RSQ=0.8351;ERATE=0.0003;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26447304 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0151;AVGPOST=0.9977;RSQ=0.9391;ERATE=0.0004;THETA=0.0008;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 26447335 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.1380;AVGPOST=0.9953;RSQ=0.9845;ERATE=0.0007;THETA=0.0015;AC=297;AN=2184 GT:DS:GL:BD 0.13598901 0 1 26447495 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0056;AVGPOST=0.9989;RSQ=0.9106;ERATE=0.0004;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26447513 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0293;AVGPOST=0.9996;RSQ=0.9937;ERATE=0.0003;THETA=0.0009;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 26447547 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6872;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26447555 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6295;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26447557 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1364;AVGPOST=0.9987;RSQ=0.9956;ERATE=0.0004;THETA=0.0011;AC=297;AN=2184 GT:DS:GL:BD 0.13598901 0 1 26447608 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.843;LDAF=0.0041;AVGPOST=0.9955;RSQ=0.5598;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26447739 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.979;LDAF=0.8801;AVGPOST=0.9896;RSQ=0.9590;ERATE=0.0005;THETA=0.0007;AC=1924;AN=2184 GT:DS:GL:BD 0.88095236 1 1 26447776 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.712;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26447789 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6710;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26447817 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.932;LDAF=0.0201;AVGPOST=0.9981;RSQ=0.9628;ERATE=0.0004;THETA=0.0005;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 26447870 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1377;AVGPOST=0.9989;RSQ=0.9960;ERATE=0.0005;THETA=0.0006;AC=299;AN=2184 GT:DS:GL:BD 0.13690476 0 1 26447976 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.893;LDAF=0.0107;AVGPOST=0.9973;RSQ=0.9075;ERATE=0.0004;THETA=0.0021;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26448045 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.722;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5099;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26448148 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=1.0000;RSQ=0.9921;ERATE=0.0008;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26448447 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1367;AVGPOST=1.0000;RSQ=0.9998;ERATE=0.0003;THETA=0.0006;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 26448849 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1366;AVGPOST=1.0000;RSQ=0.9998;ERATE=0.0003;THETA=0.0006;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 26448961 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26449122 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9799;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26449222 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0047;AVGPOST=0.9989;RSQ=0.9015;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26449233 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9538;ERATE=0.0005;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26449267 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6907;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26449327 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.1375;AVGPOST=0.9979;RSQ=0.9941;ERATE=0.0003;THETA=0.0006;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 26449335 rs3833547 CAA C 23344 PASS INDEL;BAVGPOST=0.966;BRSQ=0.933;LDAF=0.2129;AVGPOST=0.9601;RSQ=0.9152;ERATE=0.0010;THETA=0.0013;AC=453;AN=2184 GT:DS:GL:BD 0.20741758 0 1 26449337 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.908;LDAF=0.1533;AVGPOST=0.9740;RSQ=0.9348;ERATE=0.0004;THETA=0.0008;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 26449468 . CAT C 45 PASS INDEL;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.5083;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26449528 . T TG 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.714;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5938;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26449561 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5817;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26449595 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1372;AVGPOST=0.9982;RSQ=0.9943;ERATE=0.0004;THETA=0.0004;AC=299;AN=2184 GT:DS:GL:BD 0.13690476 0 1 26449754 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0055;AVGPOST=0.9981;RSQ=0.8668;ERATE=0.0004;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26449882 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0298;AVGPOST=0.9991;RSQ=0.9875;ERATE=0.0004;THETA=0.0011;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 26450009 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1711;AVGPOST=0.9985;RSQ=0.9964;ERATE=0.0007;THETA=0.0008;AC=373;AN=2184 GT:DS:GL:BD 0.17078754 0 1 26450101 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1367;AVGPOST=0.9995;RSQ=0.9982;ERATE=0.0003;THETA=0.0022;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 26450202 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.603;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5101;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26450281 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0055;AVGPOST=0.9991;RSQ=0.9452;ERATE=0.0005;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26450707 . C CA 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.753;LDAF=0.0023;AVGPOST=0.9963;RSQ=0.4073;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26450714 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0293;AVGPOST=0.9978;RSQ=0.9705;ERATE=0.0005;THETA=0.0005;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 26450763 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26450970 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.835;LDAF=0.0082;AVGPOST=0.9970;RSQ=0.8456;ERATE=0.0005;THETA=0.0020;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26451076 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0039;AVGPOST=0.9976;RSQ=0.7480;ERATE=0.0009;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26451079 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5876;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26451554 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.862;LDAF=0.0053;AVGPOST=0.9994;RSQ=0.9577;ERATE=0.0003;THETA=0.0019;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26451748 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26451995 . CT C 203 PASS INDEL;BAVGPOST=0.975;BRSQ=0.495;LDAF=0.0470;AVGPOST=0.9397;RSQ=0.4745;ERATE=0.0122;THETA=0.0018;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 26452033 . A AG 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.713;LDAF=0.0028;AVGPOST=0.9964;RSQ=0.4813;ERATE=0.0005;THETA=0.0016;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26452034 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.617;LDAF=0.0029;AVGPOST=0.9969;RSQ=0.5513;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26452064 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8821;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26452203 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26452268 . CAAG C 119 PASS INDEL;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.2928;ERATE=0.0008;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26452316 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8688;ERATE=0.0004;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26452352 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.749;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7326;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26452364 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.568;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6034;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26452386 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1337;AVGPOST=0.9986;RSQ=0.9947;ERATE=0.0004;THETA=0.0008;AC=291;AN=2184 GT:DS:GL:BD 0.13324176 0 1 26452406 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0020;AVGPOST=0.9989;RSQ=0.7952;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26452424 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.711;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6461;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26452496 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6758;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26452522 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.854;LDAF=0.0048;AVGPOST=0.9977;RSQ=0.7976;ERATE=0.0005;THETA=0.0021;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26452570 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0179;AVGPOST=0.9973;RSQ=0.9342;ERATE=0.0007;THETA=0.0007;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 26452600 . AG A 463 PASS INDEL;BAVGPOST=0.956;BRSQ=0.585;LDAF=0.0657;AVGPOST=0.9602;RSQ=0.7573;ERATE=0.0025;THETA=0.0019;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 26452604 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.955;LDAF=0.1330;AVGPOST=0.9908;RSQ=0.9725;ERATE=0.0008;THETA=0.0009;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 26452931 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7301;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26452980 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0043;AVGPOST=0.9991;RSQ=0.9115;ERATE=0.0004;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26453077 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=0.9996;RSQ=0.9054;ERATE=0.0004;THETA=0.0023;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26453217 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.7947;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26453304 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0128;AVGPOST=0.9959;RSQ=0.8697;ERATE=0.0004;THETA=0.0013;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26453394 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.961;LDAF=0.1239;AVGPOST=0.9894;RSQ=0.9668;ERATE=0.0004;THETA=0.0008;AC=270;AN=2184 GT:DS:GL:BD 0.12362637 0 1 26453396 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.959;LDAF=0.1209;AVGPOST=0.9884;RSQ=0.9617;ERATE=0.0006;THETA=0.0009;AC=263;AN=2184 GT:DS:GL:BD 0.12042125 0 1 26453497 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0209;AVGPOST=0.9973;RSQ=0.9488;ERATE=0.0005;THETA=0.0017;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 26453531 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0038;AVGPOST=0.9982;RSQ=0.7817;ERATE=0.0007;THETA=0.0012;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26453599 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0128;AVGPOST=0.9991;RSQ=0.9680;ERATE=0.0003;THETA=0.0010;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26453680 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.943;LDAF=0.0164;AVGPOST=0.9953;RSQ=0.9028;ERATE=0.0005;THETA=0.0008;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 26453789 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.757;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5467;ERATE=0.0004;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26453811 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6732;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26453961 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0005;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26454282 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26454358 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5980;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26454384 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.8090;ERATE=0.0007;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26454399 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0181;AVGPOST=0.9992;RSQ=0.9816;ERATE=0.0004;THETA=0.0010;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 26454657 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26454804 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=1.0000;RSQ=0.9960;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26454818 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26454824 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26454850 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0037;AVGPOST=0.9993;RSQ=0.9265;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26454881 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1679;AVGPOST=0.9963;RSQ=0.9904;ERATE=0.0006;THETA=0.0005;AC=367;AN=2184 GT:DS:GL:BD 0.16804029 0 1 26454918 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0047;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26454928 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0250;AVGPOST=0.9990;RSQ=0.9850;ERATE=0.0003;THETA=0.0009;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 26454968 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1369;AVGPOST=0.9991;RSQ=0.9967;ERATE=0.0004;THETA=0.0007;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 26455063 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0047;AVGPOST=0.9984;RSQ=0.8540;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26455173 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0291;AVGPOST=0.9991;RSQ=0.9874;ERATE=0.0003;THETA=0.0006;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 26455182 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2417;AVGPOST=0.9981;RSQ=0.9961;ERATE=0.0005;THETA=0.0009;AC=528;AN=2184 GT:DS:GL:BD 0.24175824 0 1 26455319 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1362;AVGPOST=0.9983;RSQ=0.9951;ERATE=0.0004;THETA=0.0009;AC=296;AN=2184 GT:DS:GL:BD 0.13553114 0 1 26455413 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26455463 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26455608 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0295;AVGPOST=0.9990;RSQ=0.9872;ERATE=0.0003;THETA=0.0006;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 26455626 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0148;AVGPOST=0.9997;RSQ=0.9902;ERATE=0.0004;THETA=0.0049;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 26455626 . C CT 7 PASS INDEL;BAVGPOST=0.999;BRSQ=0.463;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4157;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26455719 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0037;AVGPOST=0.9991;RSQ=0.8930;ERATE=0.0004;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26455812 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1338;AVGPOST=0.9992;RSQ=0.9971;ERATE=0.0004;THETA=0.0008;AC=291;AN=2184 GT:DS:GL:BD 0.13324176 0 1 26455955 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1374;AVGPOST=0.9987;RSQ=0.9961;ERATE=0.0004;THETA=0.0005;AC=300;AN=2184 GT:DS:GL:BD 0.13736264 0 1 26456008 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0020;AVGPOST=0.9990;RSQ=0.7878;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26456145 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0036;AVGPOST=0.9981;RSQ=0.7915;ERATE=0.0005;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26456271 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5620;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26456312 . AAAC A 209 PASS INDEL;BAVGPOST=0.998;BRSQ=0.721;LDAF=0.0042;AVGPOST=0.9961;RSQ=0.6136;ERATE=0.0009;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26456429 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0134;AVGPOST=0.9995;RSQ=0.9835;ERATE=0.0004;THETA=0.0006;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26456709 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1363;AVGPOST=0.9985;RSQ=0.9953;ERATE=0.0004;THETA=0.0015;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 26456741 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0059;AVGPOST=0.9985;RSQ=0.9051;ERATE=0.0004;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26456917 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0052;AVGPOST=0.9991;RSQ=0.9221;ERATE=0.0004;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26456947 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1353;AVGPOST=0.9963;RSQ=0.9866;ERATE=0.0008;THETA=0.0009;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 26457157 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26457311 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0073;AVGPOST=0.9973;RSQ=0.8801;ERATE=0.0004;THETA=0.0014;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26457411 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.9008;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26457426 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0270;AVGPOST=0.9995;RSQ=0.9923;ERATE=0.0004;THETA=0.0010;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 26457556 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0048;AVGPOST=0.9993;RSQ=0.9311;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26457662 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1367;AVGPOST=0.9993;RSQ=0.9974;ERATE=0.0005;THETA=0.0023;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 26457980 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1330;AVGPOST=0.9980;RSQ=0.9935;ERATE=0.0004;THETA=0.0006;AC=291;AN=2184 GT:DS:GL:BD 0.13324176 0 1 26458098 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.772;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.6869;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26458109 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.691;LDAF=0.0069;AVGPOST=0.9934;RSQ=0.6310;ERATE=0.0011;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26458109 . A AT 765 PASS INDEL;BAVGPOST=0.991;BRSQ=0.654;LDAF=0.0105;AVGPOST=0.9941;RSQ=0.7699;ERATE=0.0006;THETA=0.0010;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26458315 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1339;AVGPOST=0.9986;RSQ=0.9947;ERATE=0.0005;THETA=0.0029;AC=291;AN=2184 GT:DS:GL:BD 0.13324176 0 1 26458488 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0462;AVGPOST=0.9973;RSQ=0.9769;ERATE=0.0004;THETA=0.0007;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 26458543 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9872;ERATE=0.0003;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26458629 . C CA 141 PASS INDEL;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5172;ERATE=0.0009;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26458689 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.602;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6802;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26458730 . G GA 117 PASS INDEL;BAVGPOST=0.999;BRSQ=0.786;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7142;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26458790 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0039;AVGPOST=0.9992;RSQ=0.9176;ERATE=0.0003;THETA=0.0012;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26458984 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6629;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26458990 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.2543;AVGPOST=0.9987;RSQ=0.9975;ERATE=0.0004;THETA=0.0036;AC=555;AN=2184 GT:DS:GL:BD 0.25412089 0 1 26459003 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26459009 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9189;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26459036 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9767;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26459051 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.637;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5362;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26459058 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1371;AVGPOST=0.9984;RSQ=0.9952;ERATE=0.0004;THETA=0.0003;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 26459088 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.798;LDAF=0.0123;AVGPOST=0.9949;RSQ=0.8261;ERATE=0.0005;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26459117 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.812;LDAF=0.0031;AVGPOST=0.9989;RSQ=0.8535;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26459782 . TAAAAAAAA T 155 PASS INDEL;BAVGPOST=0.999;BRSQ=0.753;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7946;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26459783 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.421;LDAF=0.0048;AVGPOST=0.9933;RSQ=0.4904;ERATE=0.0004;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26459820 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.644;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.5368;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26459823 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0071;AVGPOST=0.9996;RSQ=0.9719;ERATE=0.0003;THETA=0.0009;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26459871 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.604;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.3616;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26459901 MERGED_DEL_2_2479 C . . SV;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1373;AVGPOST=0.9985;RSQ=0.9952;ERATE=0.0004;THETA=0.0006;CIEND=-178,192;CIPOS=-156,215;END=26464450;SOURCE=CNVnator_26459901_26464450;SVTYPE=DEL;AC=299;AN GT:DS:GL:BD 0.13690476 0 1 26459967 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0270;AVGPOST=0.9989;RSQ=0.9804;ERATE=0.0004;THETA=0.0009;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 26460031 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0079;AVGPOST=0.9990;RSQ=0.9424;ERATE=0.0004;THETA=0.0014;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26460065 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0204;AVGPOST=0.9994;RSQ=0.9862;ERATE=0.0005;THETA=0.0015;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 26460133 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.710;LDAF=0.0591;AVGPOST=0.9649;RSQ=0.7926;ERATE=0.0007;THETA=0.0012;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 26460137 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.690;LDAF=0.0570;AVGPOST=0.9630;RSQ=0.7692;ERATE=0.0005;THETA=0.0035;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 26460194 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.588;LDAF=0.0022;AVGPOST=0.9974;RSQ=0.5450;ERATE=0.0006;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26460211 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.971;LDAF=0.0181;AVGPOST=0.9925;RSQ=0.8483;ERATE=0.0008;THETA=0.0019;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 26460363 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.400;LDAF=0.0022;AVGPOST=0.9964;RSQ=0.2943;ERATE=0.0006;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26460448 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5687;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26460452 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.897;LDAF=0.0162;AVGPOST=0.9960;RSQ=0.9142;ERATE=0.0004;THETA=0.0010;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 26460582 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0130;AVGPOST=0.9993;RSQ=0.9753;ERATE=0.0004;THETA=0.0032;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26460618 . C CT 806 PASS INDEL;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0092;AVGPOST=0.9973;RSQ=0.8849;ERATE=0.0004;THETA=0.0014;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26460675 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6903;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26460782 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.954;LDAF=0.0215;AVGPOST=0.9979;RSQ=0.9600;ERATE=0.0004;THETA=0.0005;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 26460790 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0134;AVGPOST=0.9986;RSQ=0.9565;ERATE=0.0004;THETA=0.0008;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26460880 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.773;LDAF=0.0040;AVGPOST=0.9960;RSQ=0.6087;ERATE=0.0006;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26460890 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0288;AVGPOST=0.9984;RSQ=0.9737;ERATE=0.0005;THETA=0.0015;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 26461091 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0105;AVGPOST=0.9970;RSQ=0.9109;ERATE=0.0004;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26461114 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0074;AVGPOST=0.9995;RSQ=0.9695;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26461133 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0175;AVGPOST=0.9980;RSQ=0.9545;ERATE=0.0004;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 26461188 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0079;AVGPOST=0.9987;RSQ=0.9472;ERATE=0.0004;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26461218 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5988;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26461290 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4380;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26461311 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0022;AVGPOST=0.9979;RSQ=0.6093;ERATE=0.0005;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26461335 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0089;AVGPOST=0.9981;RSQ=0.9169;ERATE=0.0005;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26461416 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0006;AVGPOST=0.9990;RSQ=0.3172;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26461550 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.831;LDAF=0.0031;AVGPOST=0.9975;RSQ=0.7067;ERATE=0.0003;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26461884 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9253;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26462117 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0021;AVGPOST=0.9977;RSQ=0.5626;ERATE=0.0004;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26462268 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0182;AVGPOST=0.9965;RSQ=0.9379;ERATE=0.0004;THETA=0.0010;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 26462396 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0275;AVGPOST=0.9979;RSQ=0.9721;ERATE=0.0003;THETA=0.0014;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 26462407 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0046;AVGPOST=0.9991;RSQ=0.9097;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26462484 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.785;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6048;ERATE=0.0005;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26462506 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5595;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26462579 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0147;AVGPOST=0.9973;RSQ=0.9299;ERATE=0.0004;THETA=0.0016;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 26462723 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.868;LDAF=0.0109;AVGPOST=0.9965;RSQ=0.8631;ERATE=0.0007;THETA=0.0014;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26462822 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0063;AVGPOST=0.9975;RSQ=0.8539;ERATE=0.0003;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26462870 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0020;AVGPOST=0.9970;RSQ=0.4893;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26463069 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0080;AVGPOST=0.9984;RSQ=0.9285;ERATE=0.0004;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26463129 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0029;AVGPOST=0.9986;RSQ=0.8103;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26463152 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0040;AVGPOST=0.9975;RSQ=0.7271;ERATE=0.0006;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26463226 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0008;AVGPOST=0.9984;RSQ=0.0691;ERATE=0.0006;THETA=0.0007;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26463238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.982;LDAF=0.0391;AVGPOST=0.9963;RSQ=0.9692;ERATE=0.0005;THETA=0.0007;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 26463356 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.928;LDAF=0.0099;AVGPOST=0.9963;RSQ=0.8619;ERATE=0.0003;THETA=0.0013;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26463375 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.701;LDAF=0.0024;AVGPOST=0.9977;RSQ=0.5829;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26463653 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.481;LDAF=0.0038;AVGPOST=0.9942;RSQ=0.3680;ERATE=0.0010;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26463911 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0270;AVGPOST=0.9989;RSQ=0.9810;ERATE=0.0005;THETA=0.0008;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 26463958 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6249;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26464169 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0073;AVGPOST=0.9993;RSQ=0.9630;ERATE=0.0004;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26464459 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0054;AVGPOST=0.9958;RSQ=0.7022;ERATE=0.0005;THETA=0.0015;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26464577 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.739;LDAF=0.0145;AVGPOST=0.9914;RSQ=0.7961;ERATE=0.0005;THETA=0.0010;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26464597 . A AG 676 PASS INDEL;BAVGPOST=0.985;BRSQ=0.788;LDAF=0.0420;AVGPOST=0.9800;RSQ=0.8126;ERATE=0.0008;THETA=0.0007;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 26464598 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.798;LDAF=0.0360;AVGPOST=0.9849;RSQ=0.8309;ERATE=0.0006;THETA=0.0011;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 26464638 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0282;AVGPOST=0.9974;RSQ=0.9579;ERATE=0.0005;THETA=0.0005;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 26464644 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0026;AVGPOST=0.9979;RSQ=0.6387;ERATE=0.0008;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26464732 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.682;LDAF=0.0026;AVGPOST=0.9982;RSQ=0.7209;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26464782 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.654;LDAF=0.0082;AVGPOST=0.9896;RSQ=0.5464;ERATE=0.0004;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26464918 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.543;LDAF=0.0024;AVGPOST=0.9963;RSQ=0.3430;ERATE=0.0008;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26464923 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.983;LDAF=0.1369;AVGPOST=0.9941;RSQ=0.9782;ERATE=0.0011;THETA=0.0005;AC=299;AN=2184 GT:DS:GL:BD 0.13690476 0 1 26464955 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.624;LDAF=0.0039;AVGPOST=0.9940;RSQ=0.4151;ERATE=0.0006;THETA=0.0030;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26464972 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0147;AVGPOST=0.9969;RSQ=0.9224;ERATE=0.0005;THETA=0.0008;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26465014 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.772;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26465018 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.954;LDAF=0.0211;AVGPOST=0.9979;RSQ=0.9558;ERATE=0.0006;THETA=0.0034;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 26465043 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.886;LDAF=0.0077;AVGPOST=0.9983;RSQ=0.9016;ERATE=0.0005;THETA=0.0010;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26465125 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9607;ERATE=0.0003;THETA=0.0014;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26465158 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0019;AVGPOST=0.9993;RSQ=0.8406;ERATE=0.0005;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26465167 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0003;AVGPOST=0.9994;RSQ=0.2183;ERATE=0.0004;THETA=0.0017;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26465380 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8953;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26465402 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26465492 . C CA 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4036;ERATE=0.0006;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26465691 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9553;ERATE=0.0004;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26465705 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.7258;ERATE=0.0005;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26465786 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0042;AVGPOST=0.9992;RSQ=0.9207;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26465792 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0133;AVGPOST=0.9998;RSQ=0.9933;ERATE=0.0003;THETA=0.0010;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26465823 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6151;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26465901 . TTTTG T 23 PASS INDEL;BAVGPOST=0.997;BRSQ=0.710;LDAF=0.0077;AVGPOST=0.9922;RSQ=0.5562;ERATE=0.0027;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26465979 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0045;AVGPOST=0.9990;RSQ=0.8946;ERATE=0.0004;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26466189 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2540;AVGPOST=0.9963;RSQ=0.9931;ERATE=0.0004;THETA=0.0023;AC=557;AN=2184 GT:DS:GL:BD 0.25503662 0 1 26466253 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1796;AVGPOST=0.9969;RSQ=0.9918;ERATE=0.0006;THETA=0.0006;AC=393;AN=2184 GT:DS:GL:BD 0.17994505 0 1 26466314 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9057;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26466422 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26466497 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26466550 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0033;AVGPOST=0.9990;RSQ=0.8877;ERATE=0.0006;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26466581 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0133;AVGPOST=0.9998;RSQ=0.9933;ERATE=0.0003;THETA=0.0008;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26466583 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.719;LDAF=0.0023;AVGPOST=0.9986;RSQ=0.7744;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26466613 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5291;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26466753 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4622;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26466802 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0008;AVGPOST=0.9986;RSQ=0.2540;ERATE=0.0005;THETA=0.0011;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26466814 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0134;AVGPOST=0.9972;RSQ=0.9152;ERATE=0.0005;THETA=0.0009;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26466831 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.962;LDAF=0.2488;AVGPOST=0.9889;RSQ=0.9813;ERATE=0.0006;THETA=0.0008;AC=547;AN=2184 GT:DS:GL:BD 0.25045788 0 1 26466837 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0023;AVGPOST=0.9972;RSQ=0.4947;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26466839 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.642;LDAF=0.0017;AVGPOST=0.9978;RSQ=0.4399;ERATE=0.0006;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26466897 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0164;AVGPOST=0.9991;RSQ=0.9780;ERATE=0.0004;THETA=0.0014;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 26466912 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.7133;ERATE=0.0003;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26466931 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7502;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26467041 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.899;LDAF=0.0118;AVGPOST=0.9947;RSQ=0.8265;ERATE=0.0008;THETA=0.0015;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26467193 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.431;LDAF=0.0306;AVGPOST=0.9569;RSQ=0.4427;ERATE=0.0103;THETA=0.0026;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 26467269 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0288;AVGPOST=0.9976;RSQ=0.9677;ERATE=0.0004;THETA=0.0005;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 26467279 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.803;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8136;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26467426 . C CG 101 PASS INDEL;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0037;AVGPOST=0.9957;RSQ=0.4933;ERATE=0.0008;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26467427 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0024;AVGPOST=0.9968;RSQ=0.5410;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26467437 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0167;AVGPOST=0.9985;RSQ=0.9669;ERATE=0.0003;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 26467489 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0070;AVGPOST=0.9995;RSQ=0.9625;ERATE=0.0004;THETA=0.0011;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26467499 . G GC 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4913;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26467535 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.962;LDAF=0.0155;AVGPOST=0.9990;RSQ=0.9714;ERATE=0.0005;THETA=0.0010;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26467539 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.366;LDAF=0.0020;AVGPOST=0.9969;RSQ=0.3601;ERATE=0.0009;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26467669 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.466;LDAF=0.0068;AVGPOST=0.9883;RSQ=0.3257;ERATE=0.0010;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26467867 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0278;AVGPOST=0.9988;RSQ=0.9806;ERATE=0.0004;THETA=0.0007;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 26467894 . T TTA 2052 PASS INDEL;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0133;AVGPOST=0.9989;RSQ=0.9628;ERATE=0.0007;THETA=0.0015;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26467992 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0042;AVGPOST=0.9960;RSQ=0.6726;ERATE=0.0010;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26467994 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0131;AVGPOST=0.9993;RSQ=0.9746;ERATE=0.0004;THETA=0.0009;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26468184 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0092;AVGPOST=0.9979;RSQ=0.8944;ERATE=0.0007;THETA=0.0015;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26468262 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0156;AVGPOST=0.9984;RSQ=0.9516;ERATE=0.0007;THETA=0.0008;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26468330 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.729;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.6780;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26468337 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26468387 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0067;AVGPOST=0.9990;RSQ=0.9316;ERATE=0.0004;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26468707 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.6225;ERATE=0.0006;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26468737 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0129;AVGPOST=0.9976;RSQ=0.9204;ERATE=0.0007;THETA=0.0013;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26468746 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0094;AVGPOST=0.9993;RSQ=0.9687;ERATE=0.0005;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26468762 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8054;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26468777 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.845;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8560;ERATE=0.0006;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26468934 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.671;LDAF=0.0040;AVGPOST=0.9976;RSQ=0.7525;ERATE=0.0007;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26469035 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1351;AVGPOST=0.9955;RSQ=0.9838;ERATE=0.0004;THETA=0.0017;AC=294;AN=2184 GT:DS:GL:BD 0.13461539 0 1 26469094 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0096;AVGPOST=0.9991;RSQ=0.9617;ERATE=0.0005;THETA=0.0015;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26469148 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0037;AVGPOST=0.9986;RSQ=0.8476;ERATE=0.0004;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26469201 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0198;AVGPOST=0.9982;RSQ=0.9603;ERATE=0.0005;THETA=0.0006;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 26469209 . G GA 99 PASS INDEL;BAVGPOST=0.981;BRSQ=0.514;LDAF=0.0331;AVGPOST=0.9615;RSQ=0.5157;ERATE=0.0100;THETA=0.0007;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 26469289 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0032;AVGPOST=0.9988;RSQ=0.8426;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26469306 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0095;AVGPOST=0.9983;RSQ=0.9311;ERATE=0.0005;THETA=0.0011;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26469315 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0100;AVGPOST=0.9982;RSQ=0.9283;ERATE=0.0005;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26469475 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0098;AVGPOST=0.9984;RSQ=0.9454;ERATE=0.0004;THETA=0.0014;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26469514 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.704;LDAF=0.0056;AVGPOST=0.9925;RSQ=0.4950;ERATE=0.0006;THETA=0.0016;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26469603 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5156;ERATE=0.0007;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26469630 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0248;AVGPOST=0.9981;RSQ=0.9699;ERATE=0.0004;THETA=0.0008;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 26469900 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8069;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26469939 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0135;AVGPOST=0.9991;RSQ=0.9729;ERATE=0.0003;THETA=0.0013;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26470021 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26470060 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.953;LDAF=0.9693;AVGPOST=0.9973;RSQ=0.9652;ERATE=0.0004;THETA=0.0009;AC=2116;AN=2184 GT:DS:GL:BD 0.96886444 1 1 26470236 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0113;AVGPOST=0.9990;RSQ=0.9661;ERATE=0.0004;THETA=0.0008;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26470305 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0279;AVGPOST=0.9984;RSQ=0.9735;ERATE=0.0004;THETA=0.0008;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 26470404 . AC A 207 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0032;AVGPOST=0.9991;RSQ=0.8997;ERATE=0.0004;THETA=0.0020;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26470406 . AG A 204 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0028;AVGPOST=0.9997;RSQ=0.9538;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26470427 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0092;AVGPOST=1.0000;RSQ=0.9978;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26470536 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.709;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8702;ERATE=0.0003;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26470557 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0067;AVGPOST=0.9989;RSQ=0.9290;ERATE=0.0003;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26470766 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0098;AVGPOST=0.9982;RSQ=0.9255;ERATE=0.0005;THETA=0.0018;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26470905 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.700;LDAF=0.0054;AVGPOST=0.9961;RSQ=0.7017;ERATE=0.0011;THETA=0.0012;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26471075 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5092;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26471136 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0094;AVGPOST=0.9995;RSQ=0.9755;ERATE=0.0004;THETA=0.0012;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26471158 . C CA 340 PASS INDEL;BAVGPOST=0.989;BRSQ=0.587;LDAF=0.0235;AVGPOST=0.9717;RSQ=0.4920;ERATE=0.0072;THETA=0.0037;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26471267 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26471297 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0003;AVGPOST=0.9994;RSQ=0.1280;ERATE=0.0003;THETA=0.0011;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26471308 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.717;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26471316 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0294;AVGPOST=0.9996;RSQ=0.9934;ERATE=0.0004;THETA=0.0005;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 26471322 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26471384 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0005;AVGPOST=0.9994;RSQ=0.5389;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26471549 . A AC 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26471716 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8120;ERATE=0.0005;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26471743 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.989;LDAF=0.6419;AVGPOST=0.9829;RSQ=0.9774;ERATE=0.0008;THETA=0.0006;AC=1398;AN=2184 GT:DS:GL:BD 0.64010990 1 1 26471759 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0365;AVGPOST=0.9984;RSQ=0.9826;ERATE=0.0005;THETA=0.0008;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 26471798 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6610;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26471821 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0038;AVGPOST=0.9998;RSQ=0.9710;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26471832 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5407;ERATE=0.0005;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26471879 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.781;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6781;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26471948 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.640;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5441;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26471953 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5589;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26471983 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0197;AVGPOST=0.9998;RSQ=0.9956;ERATE=0.0003;THETA=0.0026;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 26471995 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0203;AVGPOST=0.9988;RSQ=0.9799;ERATE=0.0003;THETA=0.0011;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 26472117 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6785;ERATE=0.0003;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26472147 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.5800;ERATE=0.0005;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26472161 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0069;AVGPOST=0.9974;RSQ=0.8629;ERATE=0.0003;THETA=0.0011;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26472200 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0050;AVGPOST=0.9967;RSQ=0.7540;ERATE=0.0004;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26472241 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5993;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26472263 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1093;AVGPOST=0.9986;RSQ=0.9943;ERATE=0.0005;THETA=0.0016;AC=239;AN=2184 GT:DS:GL:BD 0.10943224 0 1 26472361 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0072;AVGPOST=0.9983;RSQ=0.9030;ERATE=0.0004;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26472385 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26472488 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8050;ERATE=0.0004;THETA=0.0050;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26472634 . TC T 164 PASS INDEL;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0042;AVGPOST=0.9984;RSQ=0.8328;ERATE=0.0005;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26472637 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0087;AVGPOST=0.9998;RSQ=0.9901;ERATE=0.0003;THETA=0.0019;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26472666 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0145;AVGPOST=0.9978;RSQ=0.9492;ERATE=0.0004;THETA=0.0011;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 26472689 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7303;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26472705 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0040;AVGPOST=0.9992;RSQ=0.9122;ERATE=0.0004;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26472815 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8177;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26472819 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.739;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26472827 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0203;AVGPOST=0.9995;RSQ=0.9895;ERATE=0.0004;THETA=0.0088;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 26472926 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0121;AVGPOST=0.9977;RSQ=0.9226;ERATE=0.0006;THETA=0.0010;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26473098 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.802;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8664;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26473149 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0090;AVGPOST=0.9983;RSQ=0.9121;ERATE=0.0008;THETA=0.0018;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26473161 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8250;ERATE=0.0004;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26473224 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2309;AVGPOST=0.9985;RSQ=0.9975;ERATE=0.0003;THETA=0.0012;AC=503;AN=2184 GT:DS:GL:BD 0.23031135 0 1 26473228 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6997;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26473245 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7490;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26473261 . C CT 110 PASS INDEL;BAVGPOST=0.986;BRSQ=0.570;LDAF=0.0302;AVGPOST=0.9637;RSQ=0.5010;ERATE=0.0104;THETA=0.0046;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 26473320 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8367;ERATE=0.0004;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26473443 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0501;AVGPOST=0.9961;RSQ=0.9752;ERATE=0.0005;THETA=0.0012;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 26473634 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0115;AVGPOST=0.9996;RSQ=0.9827;ERATE=0.0004;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26473758 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.2467;AVGPOST=0.9987;RSQ=0.9972;ERATE=0.0005;THETA=0.0004;AC=539;AN=2184 GT:DS:GL:BD 0.24679486 0 1 26473775 . AG A 78 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9963;RSQ=0.5789;ERATE=0.0005;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26473794 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9612;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26474120 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.644;LDAF=0.0035;AVGPOST=0.9963;RSQ=0.5717;ERATE=0.0006;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26474140 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.872;LDAF=0.0044;AVGPOST=0.9980;RSQ=0.8182;ERATE=0.0007;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26474141 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.583;LDAF=0.0049;AVGPOST=0.9924;RSQ=0.4308;ERATE=0.0014;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26474180 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6331;ERATE=0.0005;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26474251 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2468;AVGPOST=0.9995;RSQ=0.9990;ERATE=0.0003;THETA=0.0006;AC=539;AN=2184 GT:DS:GL:BD 0.24679486 0 1 26474274 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0033;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26474291 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.621;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5647;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26474308 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26474398 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2473;AVGPOST=0.9995;RSQ=0.9989;ERATE=0.0004;THETA=0.0009;AC=540;AN=2184 GT:DS:GL:BD 0.24725275 0 1 26474400 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.962;LDAF=0.0173;AVGPOST=0.9985;RSQ=0.9653;ERATE=0.0004;THETA=0.0018;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 26474439 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.952;LDAF=0.1006;AVGPOST=0.9866;RSQ=0.9455;ERATE=0.0014;THETA=0.0009;AC=214;AN=2184 GT:DS:GL:BD 0.09798535 0 1 26474444 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0060;AVGPOST=0.9991;RSQ=0.9355;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26474450 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.977;LDAF=0.0166;AVGPOST=0.9995;RSQ=0.9868;ERATE=0.0003;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 26474490 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1376;AVGPOST=0.9995;RSQ=0.9981;ERATE=0.0003;THETA=0.0009;AC=300;AN=2184 GT:DS:GL:BD 0.13736264 0 1 26474580 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1380;AVGPOST=0.9981;RSQ=0.9932;ERATE=0.0005;THETA=0.0011;AC=301;AN=2184 GT:DS:GL:BD 0.13782051 0 1 26474600 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.900;LDAF=0.0119;AVGPOST=0.9956;RSQ=0.8605;ERATE=0.0006;THETA=0.0026;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26474610 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0102;AVGPOST=0.9989;RSQ=0.9583;ERATE=0.0004;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26474629 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2474;AVGPOST=0.9979;RSQ=0.9957;ERATE=0.0006;THETA=0.0005;AC=540;AN=2184 GT:DS:GL:BD 0.24725275 0 1 26474804 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5790;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26474810 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5149;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26474838 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0127;AVGPOST=0.9979;RSQ=0.9309;ERATE=0.0004;THETA=0.0009;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26474849 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0050;AVGPOST=0.9991;RSQ=0.9187;ERATE=0.0004;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26474963 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.8243;ERATE=0.0003;THETA=0.0038;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26475029 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0115;AVGPOST=0.9997;RSQ=0.9883;ERATE=0.0003;THETA=0.0008;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26475162 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26475189 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7497;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26475194 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0112;AVGPOST=0.9995;RSQ=0.9816;ERATE=0.0004;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26475214 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5127;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26475257 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2574;AVGPOST=0.9992;RSQ=0.9983;ERATE=0.0004;THETA=0.0005;AC=562;AN=2184 GT:DS:GL:BD 0.25732601 0 1 26475368 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26475497 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8216;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26475521 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2579;AVGPOST=0.9989;RSQ=0.9979;ERATE=0.0006;THETA=0.0012;AC=563;AN=2184 GT:DS:GL:BD 0.25778389 0 1 26475558 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26475719 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.945;LDAF=0.0122;AVGPOST=0.9984;RSQ=0.9427;ERATE=0.0004;THETA=0.0034;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26475787 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26475876 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6229;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26475891 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26475904 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.942;LDAF=0.0123;AVGPOST=0.9994;RSQ=0.9753;ERATE=0.0004;THETA=0.0022;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26475950 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7918;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26475954 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.844;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.6862;ERATE=0.0004;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26476138 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.646;LDAF=0.0034;AVGPOST=0.9962;RSQ=0.6100;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26476216 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.990;LDAF=0.2441;AVGPOST=0.9958;RSQ=0.9919;ERATE=0.0008;THETA=0.0006;AC=535;AN=2184 GT:DS:GL:BD 0.24496336 0 1 26476258 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.754;LDAF=0.0018;AVGPOST=0.9980;RSQ=0.5585;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26476269 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.909;LDAF=0.0117;AVGPOST=0.9989;RSQ=0.9608;ERATE=0.0004;THETA=0.0019;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26476312 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9565;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26476318 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7193;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26476444 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8749;ERATE=0.0003;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26476474 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6853;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26476543 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26476619 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.897;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8155;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26476741 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5542;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26477001 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6294;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26477056 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.595;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.4848;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26477074 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0074;AVGPOST=0.9983;RSQ=0.9198;ERATE=0.0006;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26477110 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26477316 . A AC 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.8217;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26477481 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4796;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26477494 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4867;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26477640 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.691;LDAF=0.0042;AVGPOST=0.9969;RSQ=0.7059;ERATE=0.0010;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26477716 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.549;LDAF=0.0043;AVGPOST=0.9954;RSQ=0.5731;ERATE=0.0007;THETA=0.0021;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26477833 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.919;LDAF=0.1087;AVGPOST=0.9865;RSQ=0.9582;ERATE=0.0005;THETA=0.0008;AC=232;AN=2184 GT:DS:GL:BD 0.10622711 0 1 26477873 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26478150 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9558;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26478228 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0255;AVGPOST=0.9993;RSQ=0.9884;ERATE=0.0004;THETA=0.0006;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 26478303 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9558;ERATE=0.0003;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26478304 . G GA 26 PASS INDEL;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5537;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26478354 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1374;AVGPOST=0.9994;RSQ=0.9975;ERATE=0.0003;THETA=0.0009;AC=300;AN=2184 GT:DS:GL:BD 0.13736264 0 1 26478390 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7048;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26478459 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8474;ERATE=0.0005;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26478550 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.965;LDAF=0.0606;AVGPOST=0.9954;RSQ=0.9676;ERATE=0.0007;THETA=0.0014;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 26478609 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4936;ERATE=0.0004;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26478670 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.681;LDAF=0.0111;AVGPOST=0.9933;RSQ=0.7444;ERATE=0.0006;THETA=0.0008;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26478689 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.659;LDAF=0.0062;AVGPOST=0.9954;RSQ=0.6789;ERATE=0.0009;THETA=0.0018;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26478847 . TTAA T 19524 PASS INDEL;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.1694;AVGPOST=0.9967;RSQ=0.9904;ERATE=0.0004;THETA=0.0010;AC=372;AN=2184 GT:DS:GL:BD 0.17032968 0 1 26478922 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7172;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26478945 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1830;AVGPOST=0.9988;RSQ=0.9969;ERATE=0.0004;THETA=0.0013;AC=400;AN=2184 GT:DS:GL:BD 0.18315019 0 1 26479111 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.6839;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26479259 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7744;ERATE=0.0004;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26479396 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.973;LDAF=0.1819;AVGPOST=0.9936;RSQ=0.9844;ERATE=0.0004;THETA=0.0039;AC=396;AN=2184 GT:DS:GL:BD 0.18131869 0 1 26479421 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.664;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.3181;ERATE=0.0009;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26479496 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0044;AVGPOST=0.9973;RSQ=0.7478;ERATE=0.0004;THETA=0.0019;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26479501 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.598;LDAF=0.0040;AVGPOST=0.9969;RSQ=0.7087;ERATE=0.0006;THETA=0.0037;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26479564 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9292;ERATE=0.0003;THETA=0.0021;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26479631 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.969;LDAF=0.0113;AVGPOST=0.9989;RSQ=0.9625;ERATE=0.0003;THETA=0.0045;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26479900 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.1918;AVGPOST=0.9962;RSQ=0.9911;ERATE=0.0004;THETA=0.0130;AC=419;AN=2184 GT:DS:GL:BD 0.19184981 0 1 26480083 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0098;AVGPOST=0.9997;RSQ=0.9868;ERATE=0.0003;THETA=0.0032;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26480139 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26480191 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6742;ERATE=0.0005;THETA=0.0038;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26480363 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0172;AVGPOST=0.9993;RSQ=0.9836;ERATE=0.0003;THETA=0.0037;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 26480392 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26480619 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0033;AVGPOST=0.9992;RSQ=0.9098;ERATE=0.0003;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26480674 . TA T 90 PASS INDEL;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0071;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26480725 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0163;AVGPOST=0.9985;RSQ=0.9613;ERATE=0.0003;THETA=0.0096;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 26480764 . GC G 65 PASS INDEL;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0073;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26480898 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0054;AVGPOST=0.9992;RSQ=0.9405;ERATE=0.0004;THETA=0.0175;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26480937 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.6440;ERATE=0.0003;THETA=0.0049;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26480982 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0106;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26481030 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5500;ERATE=0.0004;THETA=0.0097;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26481110 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.929;LDAF=0.1335;AVGPOST=0.9771;RSQ=0.9220;ERATE=0.0010;THETA=0.0012;AC=283;AN=2184 GT:DS:GL:BD 0.12957875 0 1 26481141 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.940;LDAF=0.0548;AVGPOST=0.9884;RSQ=0.9107;ERATE=0.0048;THETA=0.0007;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 26481154 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0206;AVGPOST=0.9973;RSQ=0.9473;ERATE=0.0009;THETA=0.0176;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 26481159 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0072;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26481259 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0025;AVGPOST=0.9973;RSQ=0.5571;ERATE=0.0006;THETA=0.0049;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26481331 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0029;AVGPOST=0.9986;RSQ=0.8051;ERATE=0.0013;THETA=0.0020;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26481487 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.531;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8236;ERATE=0.0004;THETA=0.0194;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26481589 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.934;LDAF=0.2599;AVGPOST=0.9601;RSQ=0.9395;ERATE=0.0006;THETA=0.0068;AC=563;AN=2184 GT:DS:GL:BD 0.25778389 0 1 26481637 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0073;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26481655 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0092;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26481661 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0066;AVGPOST=0.9988;RSQ=0.9250;ERATE=0.0003;THETA=0.0028;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26481758 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26481782 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0145;AVGPOST=0.9983;RSQ=0.9522;ERATE=0.0004;THETA=0.0070;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 26481787 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0004;THETA=0.0035;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26481845 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.2829;ERATE=0.0003;THETA=0.0011;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26481993 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6534;ERATE=0.0003;THETA=0.0079;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26482047 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0051;AVGPOST=0.9991;RSQ=0.9264;ERATE=0.0004;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26482077 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0051;AVGPOST=0.9985;RSQ=0.8812;ERATE=0.0004;THETA=0.0033;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26482120 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7171;ERATE=0.0004;THETA=0.0128;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26482166 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8499;ERATE=0.0003;THETA=0.0216;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26482206 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7372;ERATE=0.0006;THETA=0.0063;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26482411 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1494;AVGPOST=0.9957;RSQ=0.9872;ERATE=0.0006;THETA=0.0005;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 26482556 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.992;LDAF=0.5405;AVGPOST=0.9897;RSQ=0.9861;ERATE=0.0010;THETA=0.0018;AC=1179;AN=2184 GT:DS:GL:BD 0.53983516 1 1 26482638 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.963;LDAF=0.9591;AVGPOST=0.9963;RSQ=0.9679;ERATE=0.0005;THETA=0.0006;AC=2097;AN=2184 GT:DS:GL:BD 0.96016484 1 1 26482714 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.590;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6666;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26482872 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0048;AVGPOST=0.9989;RSQ=0.8950;ERATE=0.0005;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26482883 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0051;AVGPOST=0.9966;RSQ=0.7493;ERATE=0.0005;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26482885 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0094;AVGPOST=0.9995;RSQ=0.9723;ERATE=0.0004;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26482991 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26483136 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.787;LDAF=0.0028;AVGPOST=0.9981;RSQ=0.6879;ERATE=0.0005;THETA=0.0046;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26483244 . CCT C 798 PASS INDEL;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0088;AVGPOST=0.9987;RSQ=0.9410;ERATE=0.0004;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26483267 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.618;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5073;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26483297 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0091;AVGPOST=0.9982;RSQ=0.9169;ERATE=0.0005;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26483381 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.2202;AVGPOST=0.9931;RSQ=0.9842;ERATE=0.0005;THETA=0.0026;AC=477;AN=2184 GT:DS:GL:BD 0.21840659 0 1 26483560 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0115;AVGPOST=0.9989;RSQ=0.9706;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26483774 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.688;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.5397;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26483823 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.953;LDAF=0.0402;AVGPOST=0.9975;RSQ=0.9757;ERATE=0.0005;THETA=0.0025;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 26483884 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5854;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26483905 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.2411;AVGPOST=0.9970;RSQ=0.9929;ERATE=0.0004;THETA=0.0005;AC=526;AN=2184 GT:DS:GL:BD 0.24084249 0 1 26484103 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.771;LDAF=0.0073;AVGPOST=0.9981;RSQ=0.8923;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26484166 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0490;AVGPOST=0.9976;RSQ=0.9792;ERATE=0.0006;THETA=0.0005;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 26484201 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2652;AVGPOST=0.9981;RSQ=0.9966;ERATE=0.0004;THETA=0.0014;AC=580;AN=2184 GT:DS:GL:BD 0.26556778 0 1 26484234 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0122;AVGPOST=0.9989;RSQ=0.9583;ERATE=0.0004;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26484295 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26484296 . AT A 243 PASS INDEL;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7258;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26484377 . TA T 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.735;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5953;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26484399 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0092;AVGPOST=0.9990;RSQ=0.9552;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26484416 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0022;AVGPOST=0.9988;RSQ=0.7701;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26484531 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2411;AVGPOST=0.9990;RSQ=0.9976;ERATE=0.0005;THETA=0.0002;AC=526;AN=2184 GT:DS:GL:BD 0.24084249 0 1 26484606 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0027;AVGPOST=0.9963;RSQ=0.4878;ERATE=0.0004;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26484651 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.718;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5326;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26484687 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6851;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26484721 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2415;AVGPOST=0.9993;RSQ=0.9982;ERATE=0.0004;THETA=0.0002;AC=526;AN=2184 GT:DS:GL:BD 0.24084249 0 1 26484836 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26484998 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.6492;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26485013 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.2221;AVGPOST=0.9989;RSQ=0.9973;ERATE=0.0005;THETA=0.0006;AC=484;AN=2184 GT:DS:GL:BD 0.22161172 0 1 26485038 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9215;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26485066 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0037;AVGPOST=0.9991;RSQ=0.8917;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26485097 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5354;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26485168 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9875;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26485291 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5108;AVGPOST=0.9960;RSQ=0.9949;ERATE=0.0005;THETA=0.0005;AC=1113;AN=2184 GT:DS:GL:BD 0.50961536 1 1 26485296 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0102;AVGPOST=0.9969;RSQ=0.8700;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26485356 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0070;AVGPOST=0.9974;RSQ=0.8465;ERATE=0.0005;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26485419 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26485434 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.823;LDAF=0.0042;AVGPOST=0.9973;RSQ=0.7843;ERATE=0.0012;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26485449 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26485517 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2210;AVGPOST=0.9968;RSQ=0.9921;ERATE=0.0005;THETA=0.0002;AC=483;AN=2184 GT:DS:GL:BD 0.22115384 0 1 26485707 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0022;AVGPOST=0.9987;RSQ=0.7581;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26485743 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2678;AVGPOST=0.9971;RSQ=0.9952;ERATE=0.0005;THETA=0.0009;AC=584;AN=2184 GT:DS:GL:BD 0.26739928 0 1 26485802 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.455;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4499;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26485875 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0086;AVGPOST=0.9992;RSQ=0.9623;ERATE=0.0004;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26485903 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.897;LDAF=0.0115;AVGPOST=0.9975;RSQ=0.9200;ERATE=0.0003;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26486014 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0500;AVGPOST=0.9980;RSQ=0.9853;ERATE=0.0004;THETA=0.0003;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 26486092 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6660;AVGPOST=0.9987;RSQ=0.9977;ERATE=0.0004;THETA=0.0004;AC=1455;AN=2184 GT:DS:GL:BD 0.66620880 1 1 26486255 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6622;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26486458 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0021;AVGPOST=0.9971;RSQ=0.5114;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26486521 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0030;AVGPOST=0.9984;RSQ=0.7795;ERATE=0.0006;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26486562 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.825;LDAF=0.0161;AVGPOST=0.9931;RSQ=0.8159;ERATE=0.0007;THETA=0.0002;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26486572 . GTTCTTTTTTTTT G 5114 PASS INDEL;BAVGPOST=0.957;BRSQ=0.688;LDAF=0.0730;AVGPOST=0.9700;RSQ=0.8390;ERATE=0.0015;THETA=0.0004;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 26486786 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.937;LDAF=0.0081;AVGPOST=0.9988;RSQ=0.9446;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26486880 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6730;AVGPOST=0.9914;RSQ=0.9864;ERATE=0.0017;THETA=0.0005;AC=1470;AN=2184 GT:DS:GL:BD 0.67307693 1 1 26486973 . G GA 1249 PASS INDEL;BAVGPOST=0.897;BRSQ=0.466;LDAF=0.1757;AVGPOST=0.8049;RSQ=0.4091;ERATE=0.0595;THETA=0.0006;AC=205;AN=2184 GT:DS:GL:BD 0.09386447 0 1 26487001 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.706;LDAF=0.0047;AVGPOST=0.9956;RSQ=0.6428;ERATE=0.0013;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26487049 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0080;AVGPOST=0.9990;RSQ=0.9527;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26487057 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0123;AVGPOST=0.9983;RSQ=0.9446;ERATE=0.0004;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26487061 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26487111 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.843;LDAF=0.0076;AVGPOST=0.9963;RSQ=0.8085;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26487839 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7444;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26487940 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.2269;AVGPOST=0.9967;RSQ=0.9925;ERATE=0.0006;THETA=0.0003;AC=494;AN=2184 GT:DS:GL:BD 0.22619048 0 1 26487942 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0032;AVGPOST=0.9989;RSQ=0.8769;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26487995 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.852;LDAF=0.0177;AVGPOST=0.9865;RSQ=0.7098;ERATE=0.0009;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26488019 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2574;AVGPOST=0.9970;RSQ=0.9946;ERATE=0.0006;THETA=0.0005;AC=562;AN=2184 GT:DS:GL:BD 0.25732601 0 1 26488155 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.787;LDAF=0.0061;AVGPOST=0.9935;RSQ=0.6324;ERATE=0.0007;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26488710 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0187;AVGPOST=0.9975;RSQ=0.9515;ERATE=0.0006;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 26488791 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.517;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6022;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26488824 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4343;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26488828 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0034;AVGPOST=0.9985;RSQ=0.8154;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26488830 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.781;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.3342;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26488947 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1340;AVGPOST=0.9987;RSQ=0.9953;ERATE=0.0004;THETA=0.0005;AC=293;AN=2184 GT:DS:GL:BD 0.13415751 0 1 26489151 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5650;ERATE=0.0006;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26489177 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0009;AVGPOST=0.9983;RSQ=0.2977;ERATE=0.0004;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26489350 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.542;LDAF=0.0028;AVGPOST=0.9972;RSQ=0.5793;ERATE=0.0007;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26489360 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.729;LDAF=0.0025;AVGPOST=0.9970;RSQ=0.5042;ERATE=0.0007;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26489393 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0087;AVGPOST=0.9993;RSQ=0.9638;ERATE=0.0004;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26489407 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.528;LDAF=0.0104;AVGPOST=0.9845;RSQ=0.4192;ERATE=0.0029;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26489423 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.815;LDAF=0.0120;AVGPOST=0.9970;RSQ=0.9003;ERATE=0.0005;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26489449 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.860;LDAF=0.0127;AVGPOST=0.9966;RSQ=0.8891;ERATE=0.0005;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26489487 rs35586037 GGC G 12293 PASS INDEL;BAVGPOST=0.964;BRSQ=0.899;LDAF=0.2138;AVGPOST=0.9745;RSQ=0.9449;ERATE=0.0005;THETA=0.0003;AC=476;AN=2184 GT:DS:GL:BD 0.21794872 0 1 26489494 rs10611528 GCC G 2239 PASS INDEL;BAVGPOST=0.964;BRSQ=0.898;LDAF=0.2167;AVGPOST=0.9699;RSQ=0.9355;ERATE=0.0010;THETA=0.0004;AC=482;AN=2184 GT:DS:GL:BD 0.22069597 0 1 26489580 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0073;AVGPOST=0.9953;RSQ=0.7380;ERATE=0.0007;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26489633 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2273;AVGPOST=0.9980;RSQ=0.9952;ERATE=0.0004;THETA=0.0004;AC=494;AN=2184 GT:DS:GL:BD 0.22619048 0 1 26489661 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26489720 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6683;AVGPOST=0.9979;RSQ=0.9961;ERATE=0.0007;THETA=0.0002;AC=1458;AN=2184 GT:DS:GL:BD 0.66758239 1 1 26489757 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0102;AVGPOST=0.9998;RSQ=0.9891;ERATE=0.0004;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26489758 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.8314;AVGPOST=0.9971;RSQ=0.9914;ERATE=0.0004;THETA=0.0004;AC=1814;AN=2184 GT:DS:GL:BD 0.83058608 1 1 26489823 . CTTTTTTTTTTT C 448 PASS INDEL;BAVGPOST=0.870;BRSQ=0.096;LDAF=0.1669;AVGPOST=0.7698;RSQ=0.3182;ERATE=0.0139;THETA=0.0004;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 26490193 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0048;AVGPOST=0.9984;RSQ=0.8528;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26490240 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.815;LDAF=0.0078;AVGPOST=0.9970;RSQ=0.8434;ERATE=0.0005;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26490724 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0109;AVGPOST=0.9924;RSQ=0.6893;ERATE=0.0015;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26490799 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.941;LDAF=0.0265;AVGPOST=0.9938;RSQ=0.8884;ERATE=0.0012;THETA=0.0002;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 26490848 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.940;BRSQ=0.902;LDAF=0.4987;AVGPOST=0.9107;RSQ=0.8830;ERATE=0.0065;THETA=0.0005;AC=1072;AN=2184 GT:DS:GL:BD 0.49084249 0 1 26491011 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.785;LDAF=0.0463;AVGPOST=0.9609;RSQ=0.6612;ERATE=0.0030;THETA=0.0004;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 26491018 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.928;LDAF=0.7835;AVGPOST=0.8961;RSQ=0.7701;ERATE=0.0126;THETA=0.0004;AC=1784;AN=2184 GT:DS:GL:BD 0.81684983 1 1 26491019 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0130;AVGPOST=0.9983;RSQ=0.9397;ERATE=0.0004;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26491355 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.6667;AVGPOST=0.9972;RSQ=0.9950;ERATE=0.0006;THETA=0.0007;AC=1458;AN=2184 GT:DS:GL:BD 0.66758239 1 1 26491475 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0031;AVGPOST=0.9989;RSQ=0.8380;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26491492 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4007;AVGPOST=0.9978;RSQ=0.9963;ERATE=0.0005;THETA=0.0004;AC=877;AN=2184 GT:DS:GL:BD 0.40155679 0 1 26491615 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0053;AVGPOST=0.9944;RSQ=0.5878;ERATE=0.0007;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26491661 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.746;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.4061;ERATE=0.0009;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26491672 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0198;AVGPOST=0.9989;RSQ=0.9745;ERATE=0.0004;THETA=0.0004;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 26491685 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.6320;AVGPOST=0.9982;RSQ=0.9969;ERATE=0.0005;THETA=0.0004;AC=1379;AN=2184 GT:DS:GL:BD 0.63141024 1 1 26491732 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0113;AVGPOST=0.9994;RSQ=0.9765;ERATE=0.0004;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26491768 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6559;AVGPOST=0.9968;RSQ=0.9949;ERATE=0.0007;THETA=0.0005;AC=1431;AN=2184 GT:DS:GL:BD 0.65521979 1 1 26491817 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2533;AVGPOST=0.9957;RSQ=0.9933;ERATE=0.0008;THETA=0.0002;AC=552;AN=2184 GT:DS:GL:BD 0.25274727 0 1 26491947 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26492027 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5625;ERATE=0.0006;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26492070 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6752;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26492086 . T TA 125 PASS INDEL;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26492377 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0201;AVGPOST=0.9990;RSQ=0.9812;ERATE=0.0004;THETA=0.0004;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 26492521 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.6027;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26492531 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.709;LDAF=0.0046;AVGPOST=0.9982;RSQ=0.8254;ERATE=0.0005;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26492734 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0112;AVGPOST=0.9996;RSQ=0.9847;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26492790 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26492805 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0041;AVGPOST=0.9995;RSQ=0.9440;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26492816 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5149;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26492855 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5112;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26492883 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0043;AVGPOST=0.9987;RSQ=0.8583;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26492965 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0010;AVGPOST=0.9986;RSQ=0.4132;ERATE=0.0004;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26492987 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6659;AVGPOST=0.9964;RSQ=0.9938;ERATE=0.0010;THETA=0.0004;AC=1455;AN=2184 GT:DS:GL:BD 0.66620880 1 1 26493026 . TC T 9480 PASS INDEL;BAVGPOST=0.976;BRSQ=0.912;LDAF=0.1595;AVGPOST=0.9922;RSQ=0.9770;ERATE=0.0006;THETA=0.0003;AC=353;AN=2184 GT:DS:GL:BD 0.16163003 0 1 26493171 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3971;AVGPOST=0.9975;RSQ=0.9961;ERATE=0.0004;THETA=0.0008;AC=864;AN=2184 GT:DS:GL:BD 0.39560440 0 1 26493223 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6872;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26493240 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6582;AVGPOST=0.9993;RSQ=0.9984;ERATE=0.0005;THETA=0.0003;AC=1437;AN=2184 GT:DS:GL:BD 0.65796703 1 1 26493249 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26493259 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26493262 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0064;AVGPOST=0.9992;RSQ=0.9533;ERATE=0.0007;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26493519 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0111;AVGPOST=0.9983;RSQ=0.9377;ERATE=0.0004;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26493545 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26493701 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6110;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26493769 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5914;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26493787 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6694;AVGPOST=0.9925;RSQ=0.9885;ERATE=0.0011;THETA=0.0006;AC=1465;AN=2184 GT:DS:GL:BD 0.67078757 1 1 26493839 . CCTGT C 45 PASS INDEL;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7472;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26494068 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.672;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6638;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26494092 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.2571;AVGPOST=0.9957;RSQ=0.9928;ERATE=0.0007;THETA=0.0011;AC=562;AN=2184 GT:DS:GL:BD 0.25732601 0 1 26494366 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.977;LDAF=0.0539;AVGPOST=0.9948;RSQ=0.9608;ERATE=0.0011;THETA=0.0164;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 26494472 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0042;AVGPOST=0.9997;RSQ=0.9688;ERATE=0.0003;THETA=0.0053;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26494477 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26494559 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0099;AVGPOST=0.9992;RSQ=0.9666;ERATE=0.0005;THETA=0.0021;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26494607 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.740;LDAF=0.0034;AVGPOST=0.9988;RSQ=0.8620;ERATE=0.0004;THETA=0.0032;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26494634 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0096;AVGPOST=0.9997;RSQ=0.9865;ERATE=0.0003;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26494648 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.771;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8116;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26494660 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0100;AVGPOST=0.9992;RSQ=0.9620;ERATE=0.0005;THETA=0.0056;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26494816 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.7917;ERATE=0.0019;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26494886 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.4738;AVGPOST=0.9915;RSQ=0.9882;ERATE=0.0042;THETA=0.0004;AC=1032;AN=2184 GT:DS:GL:BD 0.47252747 0 1 26495192 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.850;LDAF=0.0061;AVGPOST=0.9984;RSQ=0.8818;ERATE=0.0005;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26495227 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0096;AVGPOST=0.9995;RSQ=0.9750;ERATE=0.0004;THETA=0.0049;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26495373 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0071;AVGPOST=0.9994;RSQ=0.9673;ERATE=0.0004;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26495387 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4823;ERATE=0.0005;THETA=0.0046;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26495550 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4273;AVGPOST=0.9976;RSQ=0.9960;ERATE=0.0007;THETA=0.0003;AC=936;AN=2184 GT:DS:GL:BD 0.42857143 0 1 26495600 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0091;AVGPOST=0.9975;RSQ=0.9087;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26495607 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0254;AVGPOST=0.9992;RSQ=0.9855;ERATE=0.0004;THETA=0.0018;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 26495643 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.5667;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26495673 . CCTG C 40 PASS INDEL;BAVGPOST=1.000;BRSQ=0.683;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.4379;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26495675 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0052;AVGPOST=0.9992;RSQ=0.9294;ERATE=0.0004;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26495798 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5864;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26495843 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7420;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26495868 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6678;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26496128 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6352;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26496146 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8241;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26496171 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0039;AVGPOST=0.9970;RSQ=0.7123;ERATE=0.0005;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26496355 . T TC 192 PASS INDEL;BAVGPOST=0.841;BRSQ=0.170;LDAF=0.2003;AVGPOST=0.7160;RSQ=0.2505;ERATE=0.0315;THETA=0.0005;AC=173;AN=2184 GT:DS:GL:BD 0.07921246 0 1 26496370 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.969;LDAF=0.1896;AVGPOST=0.9864;RSQ=0.9652;ERATE=0.0009;THETA=0.0004;AC=410;AN=2184 GT:DS:GL:BD 0.18772894 0 1 26496383 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.936;LDAF=0.0462;AVGPOST=0.9961;RSQ=0.9630;ERATE=0.0004;THETA=0.0003;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 26496394 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0066;AVGPOST=0.9987;RSQ=0.9186;ERATE=0.0004;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26496455 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2233;AVGPOST=0.9964;RSQ=0.9913;ERATE=0.0006;THETA=0.0004;AC=486;AN=2184 GT:DS:GL:BD 0.22252747 0 1 26496459 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0030;AVGPOST=0.9987;RSQ=0.7775;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26496491 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0086;AVGPOST=0.9943;RSQ=0.7593;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26496632 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0133;AVGPOST=0.9997;RSQ=0.9901;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26496639 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0049;AVGPOST=0.9993;RSQ=0.9351;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26496651 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5035;AVGPOST=0.9989;RSQ=0.9982;ERATE=0.0004;THETA=0.0005;AC=1102;AN=2184 GT:DS:GL:BD 0.50457877 1 1 26496759 . CAG C 833 PASS INDEL;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0152;AVGPOST=0.9980;RSQ=0.9433;ERATE=0.0006;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 26496870 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4429;AVGPOST=0.9998;RSQ=0.9997;ERATE=0.0003;THETA=0.0005;AC=969;AN=2184 GT:DS:GL:BD 0.44368133 0 1 26496887 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26496960 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26497236 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26497284 . A AC 345 PASS INDEL;BAVGPOST=0.998;BRSQ=0.660;LDAF=0.0042;AVGPOST=0.9987;RSQ=0.8811;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26497340 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8280;AVGPOST=0.9972;RSQ=0.9926;ERATE=0.0013;THETA=0.0006;AC=1811;AN=2184 GT:DS:GL:BD 0.82921243 1 1 26497364 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9824;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26497474 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0097;AVGPOST=0.9999;RSQ=0.9931;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26497622 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5035;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26497626 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5043;AVGPOST=0.9974;RSQ=0.9963;ERATE=0.0004;THETA=0.0008;AC=1103;AN=2184 GT:DS:GL:BD 0.50503665 1 1 26497636 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3503;AVGPOST=0.9957;RSQ=0.9935;ERATE=0.0008;THETA=0.0004;AC=765;AN=2184 GT:DS:GL:BD 0.35027471 0 1 26497724 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4991;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26497792 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9618;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26497828 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.6384;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26498016 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0070;AVGPOST=0.9997;RSQ=0.9815;ERATE=0.0004;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26498196 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4287;AVGPOST=0.9978;RSQ=0.9962;ERATE=0.0006;THETA=0.0003;AC=938;AN=2184 GT:DS:GL:BD 0.42948717 0 1 26498251 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0116;AVGPOST=0.9987;RSQ=0.9557;ERATE=0.0003;THETA=0.0007;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26498374 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4936;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26498495 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.955;LDAF=0.0136;AVGPOST=0.9989;RSQ=0.9616;ERATE=0.0004;THETA=0.0009;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26498558 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0499;AVGPOST=0.9984;RSQ=0.9884;ERATE=0.0004;THETA=0.0004;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 26498570 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5026;AVGPOST=0.9963;RSQ=0.9949;ERATE=0.0006;THETA=0.0004;AC=1100;AN=2184 GT:DS:GL:BD 0.50366300 1 1 26498750 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0085;AVGPOST=0.9993;RSQ=0.9658;ERATE=0.0005;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26498818 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0101;AVGPOST=0.9984;RSQ=0.9386;ERATE=0.0004;THETA=0.0009;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26498848 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0699;AVGPOST=0.9966;RSQ=0.9810;ERATE=0.0006;THETA=0.0002;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 26498881 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.925;LDAF=0.1201;AVGPOST=0.9928;RSQ=0.9706;ERATE=0.0009;THETA=0.0005;AC=265;AN=2184 GT:DS:GL:BD 0.12133700 0 1 26498938 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.974;LDAF=0.0922;AVGPOST=0.9950;RSQ=0.9748;ERATE=0.0009;THETA=0.0008;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 26498946 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.975;LDAF=0.4954;AVGPOST=0.9748;RSQ=0.9651;ERATE=0.0028;THETA=0.0003;AC=1095;AN=2184 GT:DS:GL:BD 0.50137365 1 1 26498983 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0076;AVGPOST=0.9983;RSQ=0.9100;ERATE=0.0005;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26498986 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0104;AVGPOST=0.9983;RSQ=0.9354;ERATE=0.0004;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26499036 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0194;AVGPOST=0.9989;RSQ=0.9738;ERATE=0.0003;THETA=0.0003;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 26499242 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.932;LDAF=0.4109;AVGPOST=0.9594;RSQ=0.9399;ERATE=0.0046;THETA=0.0005;AC=908;AN=2184 GT:DS:GL:BD 0.41575092 0 1 26499259 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.836;LDAF=0.0141;AVGPOST=0.9981;RSQ=0.9347;ERATE=0.0006;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26499459 . AAAAAAG A 937 PASS INDEL;BAVGPOST=0.997;BRSQ=0.771;LDAF=0.0104;AVGPOST=0.9952;RSQ=0.8286;ERATE=0.0005;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26499461 . AAAAG A 1082 PASS INDEL;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0116;AVGPOST=0.9979;RSQ=0.9384;ERATE=0.0004;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26499492 rs10604376 GTAGAC G 2142 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0259;AVGPOST=0.9983;RSQ=0.9716;ERATE=0.0005;THETA=0.0005;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 26499533 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8259;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26499643 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.6894;ERATE=0.0009;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26499752 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4139;ERATE=0.0006;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26499769 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0142;AVGPOST=0.9994;RSQ=0.9789;ERATE=0.0004;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 26499797 rs112377670 T TA 18537 PASS INDEL;BAVGPOST=0.927;BRSQ=0.868;LDAF=0.3858;AVGPOST=0.9027;RSQ=0.8598;ERATE=0.0119;THETA=0.0003;AC=876;AN=2184 GT:DS:GL:BD 0.40109891 0 1 26499911 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4304;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26499935 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0120;AVGPOST=0.9997;RSQ=0.9891;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26499986 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6039;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26500082 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.958;LDAF=0.4234;AVGPOST=0.9823;RSQ=0.9748;ERATE=0.0013;THETA=0.0005;AC=938;AN=2184 GT:DS:GL:BD 0.42948717 0 1 26500088 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.623;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.4199;ERATE=0.0007;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26500498 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0142;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 26500793 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0094;AVGPOST=0.9995;RSQ=0.9768;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26500977 . CT C 71 PASS INDEL;BAVGPOST=1.000;BRSQ=0.713;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5507;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26501044 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5039;AVGPOST=0.9979;RSQ=0.9965;ERATE=0.0006;THETA=0.0004;AC=1102;AN=2184 GT:DS:GL:BD 0.50457877 1 1 26501149 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.983;LDAF=0.5015;AVGPOST=0.9937;RSQ=0.9902;ERATE=0.0011;THETA=0.0004;AC=1102;AN=2184 GT:DS:GL:BD 0.50457877 1 1 26501153 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.608;LDAF=0.0121;AVGPOST=0.9843;RSQ=0.4706;ERATE=0.0040;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26501182 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.700;LDAF=0.0587;AVGPOST=0.9489;RSQ=0.6144;ERATE=0.0202;THETA=0.0002;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 26501183 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=0.9997;RSQ=0.9862;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26501196 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.823;LDAF=0.0083;AVGPOST=0.9926;RSQ=0.6720;ERATE=0.0016;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26501209 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.444;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.3902;ERATE=0.0007;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26501245 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7311;AVGPOST=0.9918;RSQ=0.9836;ERATE=0.0009;THETA=0.0003;AC=1601;AN=2184 GT:DS:GL:BD 0.73305863 1 1 26501266 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0127;AVGPOST=0.9984;RSQ=0.9445;ERATE=0.0006;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26501360 rs55864661 C CT 2539 PASS INDEL;BAVGPOST=0.913;BRSQ=0.659;LDAF=0.1909;AVGPOST=0.8398;RSQ=0.5739;ERATE=0.0347;THETA=0.0005;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 26501375 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.961;LDAF=0.4865;AVGPOST=0.9649;RSQ=0.9513;ERATE=0.0026;THETA=0.0006;AC=1076;AN=2184 GT:DS:GL:BD 0.49267399 0 1 26501512 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.729;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4250;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26501597 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0074;AVGPOST=0.9989;RSQ=0.9382;ERATE=0.0004;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26501600 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.958;LDAF=0.0195;AVGPOST=0.9973;RSQ=0.9390;ERATE=0.0005;THETA=0.0004;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 26501827 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5042;AVGPOST=0.9980;RSQ=0.9971;ERATE=0.0005;THETA=0.0007;AC=1102;AN=2184 GT:DS:GL:BD 0.50457877 1 1 26501895 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0084;AVGPOST=0.9996;RSQ=0.9820;ERATE=0.0003;THETA=0.0008;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26501906 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.0914;AVGPOST=0.9981;RSQ=0.9903;ERATE=0.0005;THETA=0.0002;AC=200;AN=2184 GT:DS:GL:BD 0.09157509 0 1 26502229 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.673;LDAF=0.0047;AVGPOST=0.9942;RSQ=0.4814;ERATE=0.0007;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26502294 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0151;AVGPOST=0.9982;RSQ=0.9438;ERATE=0.0005;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 26502404 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0097;AVGPOST=0.9997;RSQ=0.9863;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26502414 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.698;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4950;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26502466 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2540;AVGPOST=0.9987;RSQ=0.9976;ERATE=0.0003;THETA=0.0003;AC=555;AN=2184 GT:DS:GL:BD 0.25412089 0 1 26502567 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0143;AVGPOST=0.9998;RSQ=0.9922;ERATE=0.0003;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 26502592 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.756;LDAF=0.0052;AVGPOST=0.9962;RSQ=0.7248;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26502655 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0150;AVGPOST=0.9994;RSQ=0.9805;ERATE=0.0004;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26502676 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.4267;AVGPOST=0.9965;RSQ=0.9947;ERATE=0.0004;THETA=0.0005;AC=933;AN=2184 GT:DS:GL:BD 0.42719781 0 1 26502732 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0058;AVGPOST=0.9991;RSQ=0.9259;ERATE=0.0005;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26502775 . GT G 52 PASS INDEL;BAVGPOST=0.975;BRSQ=0.430;LDAF=0.0470;AVGPOST=0.9325;RSQ=0.4037;ERATE=0.0105;THETA=0.0005;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 26502815 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.812;LDAF=0.0049;AVGPOST=0.9976;RSQ=0.7971;ERATE=0.0005;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26502827 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0255;AVGPOST=0.9992;RSQ=0.9840;ERATE=0.0004;THETA=0.0003;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 26502837 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.4202;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26502848 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.900;LDAF=0.0103;AVGPOST=0.9969;RSQ=0.8738;ERATE=0.0008;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26502967 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0073;AVGPOST=0.9988;RSQ=0.9328;ERATE=0.0005;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26503045 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.723;LDAF=0.0066;AVGPOST=0.9954;RSQ=0.6929;ERATE=0.0008;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26503163 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0073;AVGPOST=0.9990;RSQ=0.9477;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26503187 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.585;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5882;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26503284 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0066;AVGPOST=0.9971;RSQ=0.8217;ERATE=0.0004;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26503292 . T TA 1560 PASS INDEL;BAVGPOST=0.857;BRSQ=0.699;LDAF=0.2433;AVGPOST=0.8804;RSQ=0.7803;ERATE=0.0018;THETA=0.0004;AC=542;AN=2184 GT:DS:GL:BD 0.24816850 0 1 26503294 rs80144565 A AT 24088 PASS INDEL;BAVGPOST=0.947;BRSQ=0.905;LDAF=0.4159;AVGPOST=0.9722;RSQ=0.9603;ERATE=0.0028;THETA=0.0004;AC=924;AN=2184 GT:DS:GL:BD 0.42307693 0 1 26503300 . T TC 1689 PASS INDEL;BAVGPOST=0.861;BRSQ=0.721;LDAF=0.2571;AVGPOST=0.8520;RSQ=0.7462;ERATE=0.0090;THETA=0.0004;AC=546;AN=2184 GT:DS:GL:BD 0.25000000 0 1 26503474 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5402;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26503488 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7124;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26503642 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9995;RSQ=0.9544;ERATE=0.0004;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26503732 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8518;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26503776 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0127;AVGPOST=0.9992;RSQ=0.9701;ERATE=0.0004;THETA=0.0002;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26503785 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8757;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26503848 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0077;AVGPOST=0.9991;RSQ=0.9552;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26503862 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9179;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26503884 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.9020;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26503891 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9944;ERATE=0.0003;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26503901 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26503902 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26503922 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26503933 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26503989 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9436;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26504019 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26504036 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1193;AVGPOST=0.9999;RSQ=0.9996;ERATE=0.0003;THETA=0.0007;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 26504038 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26504047 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9867;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26504066 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0031;AVGPOST=0.9997;RSQ=0.9616;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26504084 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26504196 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5041;AVGPOST=1.0000;RSQ=0.9999;ERATE=0.0003;THETA=0.0003;AC=1103;AN=2184 GT:DS:GL:BD 0.50503665 1 1 26504277 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0056;AVGPOST=0.9988;RSQ=0.9211;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26504407 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.737;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7661;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26504417 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.5795;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26504418 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.926;LDAF=0.0918;AVGPOST=0.9900;RSQ=0.9540;ERATE=0.0008;THETA=0.0004;AC=195;AN=2184 GT:DS:GL:BD 0.08928572 0 1 26504437 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5561;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26504444 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26504470 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0066;AVGPOST=0.9987;RSQ=0.9181;ERATE=0.0004;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26504498 . G GGTCA 248 PASS INDEL;BAVGPOST=0.999;BRSQ=0.753;LDAF=0.0021;AVGPOST=0.9980;RSQ=0.6180;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26504536 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0072;AVGPOST=0.9994;RSQ=0.9637;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26504654 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4335;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26504661 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.923;LDAF=0.0221;AVGPOST=0.9832;RSQ=0.6923;ERATE=0.0021;THETA=0.0006;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 26504697 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5039;AVGPOST=0.9974;RSQ=0.9961;ERATE=0.0006;THETA=0.0002;AC=1104;AN=2184 GT:DS:GL:BD 0.50549453 1 1 26504741 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.985;LDAF=0.4965;AVGPOST=0.9985;RSQ=0.9976;ERATE=0.0005;THETA=0.0004;AC=1087;AN=2184 GT:DS:GL:BD 0.49771062 0 1 26504756 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.5042;AVGPOST=0.9981;RSQ=0.9969;ERATE=0.0005;THETA=0.0003;AC=1104;AN=2184 GT:DS:GL:BD 0.50549453 1 1 26504784 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=0.9995;RSQ=0.9628;ERATE=0.0004;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26504900 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0083;AVGPOST=0.9998;RSQ=0.9880;ERATE=0.0003;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26504919 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0613;AVGPOST=0.9996;RSQ=0.9972;ERATE=0.0004;THETA=0.0006;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 26504920 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0034;AVGPOST=0.9981;RSQ=0.7748;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26504933 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0032;AVGPOST=0.9985;RSQ=0.8140;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26504988 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7182;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26505067 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0253;AVGPOST=0.9995;RSQ=0.9910;ERATE=0.0003;THETA=0.0003;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 26505074 . G GA 49 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9068;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26505163 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.5549;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26505265 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5036;AVGPOST=0.9994;RSQ=0.9989;ERATE=0.0004;THETA=0.0002;AC=1102;AN=2184 GT:DS:GL:BD 0.50457877 1 1 26505324 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0070;AVGPOST=0.9997;RSQ=0.9836;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26505325 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9465;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26505413 . AAC A 227 PASS INDEL;BAVGPOST=0.980;BRSQ=0.653;LDAF=0.0484;AVGPOST=0.9475;RSQ=0.5333;ERATE=0.0244;THETA=0.0005;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 26505418 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5514;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26505548 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1198;AVGPOST=0.9995;RSQ=0.9978;ERATE=0.0003;THETA=0.0024;AC=262;AN=2184 GT:DS:GL:BD 0.11996337 0 1 26505742 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6560;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26505761 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.6795;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26505899 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0054;AVGPOST=0.9998;RSQ=0.9853;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26506067 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6937;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26506323 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9624;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26506352 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26506356 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.776;LDAF=0.0021;AVGPOST=0.9978;RSQ=0.5912;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26506381 . C CT 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.5952;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26506393 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6008;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26506425 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6343;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26506440 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0153;AVGPOST=0.9995;RSQ=0.9836;ERATE=0.0003;THETA=0.0005;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26506538 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26506576 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0084;AVGPOST=0.9997;RSQ=0.9837;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26506586 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0839;AVGPOST=0.9995;RSQ=0.9972;ERATE=0.0004;THETA=0.0004;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 26506742 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26506753 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3867;AVGPOST=0.9996;RSQ=0.9993;ERATE=0.0004;THETA=0.0002;AC=846;AN=2184 GT:DS:GL:BD 0.38736263 0 1 26506790 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3866;AVGPOST=0.9997;RSQ=0.9995;ERATE=0.0003;THETA=0.0007;AC=846;AN=2184 GT:DS:GL:BD 0.38736263 0 1 26507077 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26507078 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26507167 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26507232 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0135;AVGPOST=0.9996;RSQ=0.9924;ERATE=0.0003;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26507260 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0008;AVGPOST=0.9998;RSQ=0.8927;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26507364 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26507394 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0133;AVGPOST=0.9999;RSQ=0.9967;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 26507407 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0092;AVGPOST=0.9998;RSQ=0.9915;ERATE=0.0005;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26507536 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0056;AVGPOST=0.9995;RSQ=0.9618;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26507568 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9916;ERATE=0.0003;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26507587 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2818;AVGPOST=0.9986;RSQ=0.9977;ERATE=0.0004;THETA=0.0002;AC=616;AN=2184 GT:DS:GL:BD 0.28205130 0 1 26507612 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0182;AVGPOST=0.9975;RSQ=0.9448;ERATE=0.0004;THETA=0.0007;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 26507634 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0027;AVGPOST=0.9974;RSQ=0.5882;ERATE=0.0006;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26507721 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.675;LDAF=0.0023;AVGPOST=0.9984;RSQ=0.7067;ERATE=0.0007;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26507851 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0073;AVGPOST=0.9984;RSQ=0.9244;ERATE=0.0004;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26507853 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2980;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0004;THETA=0.0005;AC=652;AN=2184 GT:DS:GL:BD 0.29853481 0 1 26507978 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.847;LDAF=0.0058;AVGPOST=0.9980;RSQ=0.8614;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26508035 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8364;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26508037 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0204;AVGPOST=0.9984;RSQ=0.9683;ERATE=0.0004;THETA=0.0007;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 26508038 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26508102 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26508293 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2546;AVGPOST=1.0000;RSQ=0.9999;ERATE=0.0003;THETA=0.0005;AC=557;AN=2184 GT:DS:GL:BD 0.25503662 0 1 26508324 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0036;AVGPOST=1.0000;RSQ=0.9940;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26508339 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0119;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26508416 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0041;AVGPOST=1.0000;RSQ=0.9946;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26508480 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2967;AVGPOST=0.9999;RSQ=0.9998;ERATE=0.0003;THETA=0.0042;AC=649;AN=2184 GT:DS:GL:BD 0.29716116 0 1 26508538 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0152;AVGPOST=0.9997;RSQ=0.9935;ERATE=0.0003;THETA=0.0007;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26508542 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9830;ERATE=0.0007;THETA=0.0029;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26508543 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26508600 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0075;AVGPOST=0.9988;RSQ=0.9551;ERATE=0.0003;THETA=0.0010;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26508689 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8063;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26508706 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0020;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26508767 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26508802 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26508893 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26508967 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0032;AVGPOST=1.0000;RSQ=0.9932;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26508997 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0493;AVGPOST=0.9999;RSQ=0.9988;ERATE=0.0003;THETA=0.0010;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 26509049 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0012;AVGPOST=0.9996;RSQ=0.9075;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26509070 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26509084 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26509273 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0062;AVGPOST=0.9995;RSQ=0.9746;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26509307 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.756;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0053;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26509378 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6707;ERATE=0.0004;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26509479 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0085;AVGPOST=0.9995;RSQ=0.9792;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26509638 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26509662 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8689;ERATE=0.0003;THETA=0.0041;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26509736 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26509774 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0006;THETA=0.0036;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26509783 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26509803 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0055;AVGPOST=1.0000;RSQ=0.9960;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26509852 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0009;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26510115 . AGAAGTGGGAGGC A 2919 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0100;AVGPOST=0.9989;RSQ=0.9532;ERATE=0.0004;THETA=0.0008;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26510310 . AC A 395 PASS INDEL;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0388;AVGPOST=0.9691;RSQ=0.6583;ERATE=0.0014;THETA=0.0007;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 26510317 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26510322 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26510336 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0846;AVGPOST=0.9985;RSQ=0.9922;ERATE=0.0006;THETA=0.0003;AC=186;AN=2184 GT:DS:GL:BD 0.08516484 0 1 26510337 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8838;ERATE=0.0011;THETA=0.0037;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26510343 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0059;AVGPOST=0.9991;RSQ=0.9432;ERATE=0.0005;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26510363 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0177;AVGPOST=0.9934;RSQ=0.8500;ERATE=0.0008;THETA=0.0004;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26510439 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.983;LDAF=0.2378;AVGPOST=0.9879;RSQ=0.9735;ERATE=0.0006;THETA=0.0003;AC=516;AN=2184 GT:DS:GL:BD 0.23626374 0 1 26510496 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9861;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26510555 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26510563 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26510649 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0092;AVGPOST=1.0000;RSQ=0.9976;ERATE=0.0003;THETA=0.0008;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26510720 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.8040;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26510721 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26510724 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26510861 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=1.0000;RSQ=0.9970;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26510932 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8739;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26510940 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0257;AVGPOST=0.9997;RSQ=0.9956;ERATE=0.0004;THETA=0.0004;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 26511020 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0128;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26511139 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1010;AVGPOST=0.9998;RSQ=0.9989;ERATE=0.0003;THETA=0.0023;AC=221;AN=2184 GT:DS:GL:BD 0.10119048 0 1 26511339 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0066;AVGPOST=0.9996;RSQ=0.9770;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26511398 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=0.9999;RSQ=0.9940;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26511427 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26511455 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0080;AVGPOST=0.9993;RSQ=0.9690;ERATE=0.0003;THETA=0.0017;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26511559 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26511563 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.7037;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26511569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6469;ERATE=0.0003;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26511622 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0129;AVGPOST=0.9997;RSQ=0.9897;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26511700 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6899;AVGPOST=0.9948;RSQ=0.9911;ERATE=0.0016;THETA=0.0027;AC=1506;AN=2184 GT:DS:GL:BD 0.68956041 1 1 26511783 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4905;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26511932 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0077;AVGPOST=0.9991;RSQ=0.9517;ERATE=0.0005;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26511952 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.3436;ERATE=0.0006;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26512084 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.658;LDAF=0.0103;AVGPOST=0.9888;RSQ=0.5469;ERATE=0.0029;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26512119 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0042;AVGPOST=0.9979;RSQ=0.7806;ERATE=0.0006;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26512135 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0069;AVGPOST=0.9958;RSQ=0.7302;ERATE=0.0008;THETA=0.0032;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26512158 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.689;LDAF=0.0042;AVGPOST=0.9945;RSQ=0.5032;ERATE=0.0009;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26512163 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0103;AVGPOST=0.9981;RSQ=0.9303;ERATE=0.0004;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26512233 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.4643;AVGPOST=0.9919;RSQ=0.9876;ERATE=0.0004;THETA=0.0004;AC=1017;AN=2184 GT:DS:GL:BD 0.46565935 0 1 26512278 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.772;LDAF=0.0031;AVGPOST=0.9975;RSQ=0.6568;ERATE=0.0005;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26512302 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0052;AVGPOST=0.9996;RSQ=0.9626;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26512331 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9544;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26512332 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7572;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26512379 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9900;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26512538 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0038;AVGPOST=0.9988;RSQ=0.8866;ERATE=0.0005;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26512556 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.892;LDAF=0.0120;AVGPOST=0.9975;RSQ=0.9247;ERATE=0.0003;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26512608 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=1.0000;RSQ=0.9970;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26512612 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6731;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26512629 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0066;AVGPOST=0.9996;RSQ=0.9740;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26512787 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8613;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26512988 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.930;LDAF=0.0152;AVGPOST=0.9969;RSQ=0.9196;ERATE=0.0004;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 26512996 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26513186 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0133;AVGPOST=0.9972;RSQ=0.9000;ERATE=0.0006;THETA=0.0009;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26513187 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5749;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26513256 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0052;AVGPOST=0.9971;RSQ=0.7584;ERATE=0.0005;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26513268 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0131;AVGPOST=0.9993;RSQ=0.9789;ERATE=0.0003;THETA=0.0009;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26513332 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26513447 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0078;AVGPOST=0.9999;RSQ=0.9924;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26513535 . TAGAG T 1640 PASS INDEL;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0133;AVGPOST=0.9979;RSQ=0.9333;ERATE=0.0006;THETA=0.0017;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26513565 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0032;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26513852 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26513940 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26513957 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26513967 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26513983 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=1.0000;RSQ=0.9972;ERATE=0.0003;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26514364 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.629;LDAF=0.0059;AVGPOST=0.9912;RSQ=0.4364;ERATE=0.0014;THETA=0.0045;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26514441 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0112;AVGPOST=0.9994;RSQ=0.9746;ERATE=0.0004;THETA=0.0012;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26514457 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5365;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26514523 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0128;AVGPOST=0.9999;RSQ=0.9965;ERATE=0.0003;THETA=0.0007;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26514669 . CA C 108 PASS INDEL;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4466;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26514692 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0041;AVGPOST=0.9999;RSQ=0.9894;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26514698 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26514732 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26514762 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26514790 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26514810 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0037;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26515015 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0127;AVGPOST=0.9997;RSQ=0.9898;ERATE=0.0003;THETA=0.0009;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26515016 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0127;AVGPOST=0.9997;RSQ=0.9898;ERATE=0.0003;THETA=0.0007;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26515077 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9910;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26515169 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0128;AVGPOST=1.0000;RSQ=0.9983;ERATE=0.0003;THETA=0.0012;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26515219 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9876;ERATE=0.0004;THETA=0.0014;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26515248 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26515264 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0030;AVGPOST=0.9993;RSQ=0.8990;ERATE=0.0010;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26515307 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0064;AVGPOST=1.0000;RSQ=0.9966;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26515374 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26515416 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0117;AVGPOST=0.9986;RSQ=0.9554;ERATE=0.0007;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26515477 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7277;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26515529 rs11278474 ACCAGACT A 52825 PASS INDEL;BAVGPOST=0.989;BRSQ=0.932;LDAF=0.9434;AVGPOST=0.9885;RSQ=0.9259;ERATE=0.0013;THETA=0.0003;AC=2064;AN=2184 GT:DS:GL:BD 0.94505495 1 1 26515547 . GA G 209 PASS INDEL;BAVGPOST=0.898;BRSQ=0.221;LDAF=0.1393;AVGPOST=0.7844;RSQ=0.2856;ERATE=0.0194;THETA=0.0006;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 26515559 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0115;AVGPOST=0.9990;RSQ=0.9670;ERATE=0.0004;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26515583 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26515735 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7566;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26515840 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26515860 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0064;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26515866 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26515916 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26515956 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0969;AVGPOST=0.9999;RSQ=0.9995;ERATE=0.0003;THETA=0.0004;AC=212;AN=2184 GT:DS:GL:BD 0.09706960 0 1 26515965 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26516052 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26516075 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26516174 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26516322 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26516338 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.689;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6947;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26516365 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.683;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7188;ERATE=0.0005;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26516373 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0128;AVGPOST=1.0000;RSQ=0.9983;ERATE=0.0003;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26516387 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6642;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26516425 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26516455 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0066;AVGPOST=0.9985;RSQ=0.9172;ERATE=0.0004;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26516487 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5296;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26516488 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0130;AVGPOST=0.9995;RSQ=0.9836;ERATE=0.0004;THETA=0.0009;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26516506 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.752;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.7737;ERATE=0.0006;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26516559 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9641;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26516623 . C CG 17 PASS INDEL;BAVGPOST=0.999;BRSQ=0.621;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4800;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26516624 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.697;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.2913;ERATE=0.0004;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26516712 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8632;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26516761 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26516801 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26516845 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5404;AVGPOST=0.9911;RSQ=0.9866;ERATE=0.0005;THETA=0.0005;AC=1180;AN=2184 GT:DS:GL:BD 0.54029304 1 1 26516898 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0065;AVGPOST=0.9996;RSQ=0.9757;ERATE=0.0003;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26516905 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26516976 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0128;AVGPOST=0.9999;RSQ=0.9965;ERATE=0.0003;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 26517111 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26517151 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26517200 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26517211 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26517243 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26517267 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1372;AVGPOST=0.9996;RSQ=0.9986;ERATE=0.0003;THETA=0.0005;AC=300;AN=2184 GT:DS:GL:BD 0.13736264 0 1 26517280 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=1.0000;RSQ=0.9921;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26517330 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26517346 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0142;AVGPOST=0.9999;RSQ=0.9955;ERATE=0.0003;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 26517377 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26517430 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0088;AVGPOST=0.9997;RSQ=0.9822;ERATE=0.0004;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26517519 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26517533 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0029;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26517651 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26517653 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8767;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26517667 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2857;AVGPOST=0.9996;RSQ=0.9991;ERATE=0.0004;THETA=0.0003;AC=625;AN=2184 GT:DS:GL:BD 0.28617215 0 1 26517773 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1472;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=322;AN=2184 GT:DS:GL:BD 0.14743590 0 1 26517794 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1372;AVGPOST=0.9998;RSQ=0.9994;ERATE=0.0003;THETA=0.0005;AC=300;AN=2184 GT:DS:GL:BD 0.13736264 0 1 26517802 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26517811 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0037;AVGPOST=1.0000;RSQ=0.9941;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26517835 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26517840 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26517891 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1335;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 26517908 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26517971 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0110;AVGPOST=1.0000;RSQ=0.9980;ERATE=0.0003;THETA=0.0011;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26518202 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.704;LDAF=0.0068;AVGPOST=0.9943;RSQ=0.6945;ERATE=0.0016;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 26518230 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26518327 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0110;AVGPOST=0.9999;RSQ=0.9940;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26518416 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6514;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26518431 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26518451 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9895;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26518470 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1471;AVGPOST=0.9995;RSQ=0.9984;ERATE=0.0003;THETA=0.0006;AC=322;AN=2184 GT:DS:GL:BD 0.14743590 0 1 26518499 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0085;AVGPOST=0.9990;RSQ=0.9532;ERATE=0.0004;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26518510 . CCAGG C 5386 PASS INDEL;BAVGPOST=0.992;BRSQ=0.860;LDAF=0.0248;AVGPOST=0.9952;RSQ=0.9317;ERATE=0.0003;THETA=0.0008;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 26518538 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0041;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26518692 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.767;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4758;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26518703 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.826;LDAF=0.0098;AVGPOST=0.9966;RSQ=0.8721;ERATE=0.0003;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26518740 . TC T 45 PASS INDEL;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7044;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26518806 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.690;LDAF=0.0048;AVGPOST=0.9970;RSQ=0.7785;ERATE=0.0006;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26518807 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6227;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26518910 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.917;LDAF=0.0096;AVGPOST=0.9957;RSQ=0.8303;ERATE=0.0007;THETA=0.0007;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26518966 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=0.9979;RSQ=0.9034;ERATE=0.0006;THETA=0.0015;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26519005 . AG A 44 PASS INDEL;BAVGPOST=0.995;BRSQ=0.684;LDAF=0.0226;AVGPOST=0.9738;RSQ=0.5256;ERATE=0.0064;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26519019 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.970;LDAF=0.1266;AVGPOST=0.9926;RSQ=0.9734;ERATE=0.0010;THETA=0.0006;AC=276;AN=2184 GT:DS:GL:BD 0.12637363 0 1 26519076 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.894;LDAF=0.1431;AVGPOST=0.9852;RSQ=0.9510;ERATE=0.0013;THETA=0.0004;AC=316;AN=2184 GT:DS:GL:BD 0.14468865 0 1 26519080 . CA C 58 PASS INDEL;BAVGPOST=0.969;BRSQ=0.363;LDAF=0.0479;AVGPOST=0.9382;RSQ=0.4758;ERATE=0.0051;THETA=0.0022;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 26519090 rs111451881 A AT 27156 PASS INDEL;BAVGPOST=0.980;BRSQ=0.293;LDAF=0.9826;AVGPOST=0.9773;RSQ=0.4996;ERATE=0.0011;THETA=0.0004;AC=2163;AN=2184 GT:DS:GL:BD 0.99038464 1 1 26519181 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1051;AVGPOST=0.9973;RSQ=0.9891;ERATE=0.0006;THETA=0.0004;AC=229;AN=2184 GT:DS:GL:BD 0.10485348 0 1 26519198 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.939;LDAF=0.0070;AVGPOST=0.9988;RSQ=0.9353;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26519283 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0065;AVGPOST=0.9997;RSQ=0.9826;ERATE=0.0004;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26519293 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0182;AVGPOST=0.9985;RSQ=0.9673;ERATE=0.0003;THETA=0.0006;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 26519330 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0053;AVGPOST=0.9994;RSQ=0.9482;ERATE=0.0004;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26519350 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0094;AVGPOST=0.9994;RSQ=0.9806;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26519461 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0112;AVGPOST=0.9995;RSQ=0.9808;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26519462 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1246;AVGPOST=0.9994;RSQ=0.9973;ERATE=0.0004;THETA=0.0014;AC=272;AN=2184 GT:DS:GL:BD 0.12454212 0 1 26519463 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5445;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26519491 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0014;AVGPOST=0.9986;RSQ=0.6123;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26519496 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0193;AVGPOST=0.9991;RSQ=0.9798;ERATE=0.0004;THETA=0.0007;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 26519497 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26519561 . AAAAAG A 1621 PASS INDEL;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0114;AVGPOST=0.9991;RSQ=0.9634;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26519614 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1143;AVGPOST=0.9995;RSQ=0.9980;ERATE=0.0003;THETA=0.0005;AC=250;AN=2184 GT:DS:GL:BD 0.11446887 0 1 26519670 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5836;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26519963 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0093;AVGPOST=0.9995;RSQ=0.9747;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26519964 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7048;AVGPOST=0.9992;RSQ=0.9986;ERATE=0.0003;THETA=0.0003;AC=1538;AN=2184 GT:DS:GL:BD 0.70421243 1 1 26520051 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9180;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26520063 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9179;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26520214 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26520292 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0343;AVGPOST=0.9995;RSQ=0.9939;ERATE=0.0003;THETA=0.0003;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 26520316 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8498;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26520354 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26520395 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0110;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26520424 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26520477 . ATG A 242 PASS INDEL;BAVGPOST=0.986;BRSQ=0.735;LDAF=0.0323;AVGPOST=0.9749;RSQ=0.6647;ERATE=0.0166;THETA=0.0023;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 26520989 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26521140 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1452;AVGPOST=0.9984;RSQ=0.9943;ERATE=0.0004;THETA=0.0032;AC=318;AN=2184 GT:DS:GL:BD 0.14560440 0 1 26521156 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0055;AVGPOST=0.9998;RSQ=0.9841;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26521218 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7888;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26521437 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0074;AVGPOST=0.9978;RSQ=0.8782;ERATE=0.0007;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26521501 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0110;AVGPOST=0.9977;RSQ=0.9182;ERATE=0.0005;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26521506 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.399;LDAF=0.0064;AVGPOST=0.9939;RSQ=0.6604;ERATE=0.0007;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26521531 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5303;ERATE=0.0005;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26521678 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26521755 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26521825 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5170;AVGPOST=0.9968;RSQ=0.9946;ERATE=0.0004;THETA=0.0004;AC=1129;AN=2184 GT:DS:GL:BD 0.51694137 1 1 26521891 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1054;AVGPOST=0.9989;RSQ=0.9949;ERATE=0.0004;THETA=0.0004;AC=230;AN=2184 GT:DS:GL:BD 0.10531136 0 1 26521931 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.974;LDAF=0.1339;AVGPOST=0.9968;RSQ=0.9896;ERATE=0.0007;THETA=0.0004;AC=294;AN=2184 GT:DS:GL:BD 0.13461539 0 1 26521933 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5068;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26522015 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.752;LDAF=0.0125;AVGPOST=0.9904;RSQ=0.7298;ERATE=0.0009;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26522034 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.945;BRSQ=0.898;LDAF=0.7050;AVGPOST=0.9729;RSQ=0.9562;ERATE=0.0012;THETA=0.0002;AC=1556;AN=2184 GT:DS:GL:BD 0.71245420 1 1 26522035 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.932;BRSQ=0.696;LDAF=0.1312;AVGPOST=0.9875;RSQ=0.9549;ERATE=0.0006;THETA=0.0003;AC=294;AN=2184 GT:DS:GL:BD 0.13461539 0 1 26522077 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0226;AVGPOST=0.9938;RSQ=0.8861;ERATE=0.0007;THETA=0.0002;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 26522083 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0053;AVGPOST=0.9968;RSQ=0.7306;ERATE=0.0005;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26522085 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0072;AVGPOST=0.9983;RSQ=0.8987;ERATE=0.0005;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26522141 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.497;LDAF=0.0050;AVGPOST=0.9954;RSQ=0.6283;ERATE=0.0008;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26522183 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0093;AVGPOST=0.9996;RSQ=0.9786;ERATE=0.0004;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26522210 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.584;LDAF=0.0026;AVGPOST=0.9973;RSQ=0.5424;ERATE=0.0007;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26522214 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.948;LDAF=0.5052;AVGPOST=0.9671;RSQ=0.9481;ERATE=0.0073;THETA=0.0002;AC=1113;AN=2184 GT:DS:GL:BD 0.50961536 1 1 26522275 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0068;AVGPOST=0.9989;RSQ=0.9350;ERATE=0.0005;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26522277 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.724;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4863;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26522392 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1351;AVGPOST=0.9994;RSQ=0.9974;ERATE=0.0004;THETA=0.0002;AC=295;AN=2184 GT:DS:GL:BD 0.13507326 0 1 26522464 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6294;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26522491 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0020;AVGPOST=0.9980;RSQ=0.6520;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26522518 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2476;AVGPOST=0.9990;RSQ=0.9975;ERATE=0.0005;THETA=0.0009;AC=540;AN=2184 GT:DS:GL:BD 0.24725275 0 1 26522723 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2485;AVGPOST=0.9984;RSQ=0.9962;ERATE=0.0006;THETA=0.0003;AC=542;AN=2184 GT:DS:GL:BD 0.24816850 0 1 26522887 . C CT 25 PASS INDEL;BAVGPOST=0.988;BRSQ=0.363;LDAF=0.0058;AVGPOST=0.9919;RSQ=0.4357;ERATE=0.0007;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26522891 . TCC T 131 PASS INDEL;BAVGPOST=0.968;BRSQ=0.385;LDAF=0.0546;AVGPOST=0.9255;RSQ=0.4234;ERATE=0.0098;THETA=0.0003;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 26522927 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0209;AVGPOST=0.9963;RSQ=0.9301;ERATE=0.0006;THETA=0.0003;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 26522939 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2492;AVGPOST=0.9965;RSQ=0.9923;ERATE=0.0006;THETA=0.0004;AC=542;AN=2184 GT:DS:GL:BD 0.24816850 0 1 26522944 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0066;AVGPOST=0.9993;RSQ=0.9568;ERATE=0.0004;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26523000 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7136;AVGPOST=0.9972;RSQ=0.9950;ERATE=0.0006;THETA=0.0004;AC=1559;AN=2184 GT:DS:GL:BD 0.71382785 1 1 26523402 . TTC T 68 PASS INDEL;BAVGPOST=0.929;BRSQ=0.550;LDAF=0.0984;AVGPOST=0.9235;RSQ=0.6765;ERATE=0.0019;THETA=0.0002;AC=185;AN=2184 GT:DS:GL:BD 0.08470696 0 1 26523403 . TC T 601 PASS INDEL;BAVGPOST=0.944;BRSQ=0.683;LDAF=0.0919;AVGPOST=0.9481;RSQ=0.7824;ERATE=0.0020;THETA=0.0003;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 26523404 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.921;LDAF=0.1321;AVGPOST=0.9927;RSQ=0.9757;ERATE=0.0004;THETA=0.0003;AC=295;AN=2184 GT:DS:GL:BD 0.13507326 0 1 26523407 . T TC 5508 PASS INDEL;BAVGPOST=0.985;BRSQ=0.954;LDAF=0.1823;AVGPOST=0.9828;RSQ=0.9565;ERATE=0.0007;THETA=0.0003;AC=394;AN=2184 GT:DS:GL:BD 0.18040293 0 1 26523408 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.947;LDAF=0.1795;AVGPOST=0.9875;RSQ=0.9663;ERATE=0.0012;THETA=0.0003;AC=392;AN=2184 GT:DS:GL:BD 0.17948718 0 1 26523423 rs58501092 GAT G 1073 PASS INDEL;BAVGPOST=0.849;BRSQ=0.380;LDAF=0.1755;AVGPOST=0.8043;RSQ=0.4730;ERATE=0.0198;THETA=0.0005;AC=231;AN=2184 GT:DS:GL:BD 0.10576923 0 1 26523425 rs113668595 T TTGAG 39701 PASS INDEL;BAVGPOST=0.918;BRSQ=0.855;LDAF=0.6620;AVGPOST=0.9058;RSQ=0.8731;ERATE=0.0057;THETA=0.0009;AC=1498;AN=2184 GT:DS:GL:BD 0.68589741 1 1 26523507 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1990;AVGPOST=0.9964;RSQ=0.9913;ERATE=0.0007;THETA=0.0005;AC=434;AN=2184 GT:DS:GL:BD 0.19871795 0 1 26523546 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1331;AVGPOST=0.9965;RSQ=0.9880;ERATE=0.0004;THETA=0.0023;AC=293;AN=2184 GT:DS:GL:BD 0.13415751 0 1 26523582 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1382;AVGPOST=0.9972;RSQ=0.9907;ERATE=0.0005;THETA=0.0006;AC=302;AN=2184 GT:DS:GL:BD 0.13827839 0 1 26523591 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0065;AVGPOST=0.9998;RSQ=0.9831;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26523631 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0079;AVGPOST=0.9983;RSQ=0.9117;ERATE=0.0005;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26523643 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.899;LDAF=0.1218;AVGPOST=0.9865;RSQ=0.9542;ERATE=0.0005;THETA=0.0006;AC=269;AN=2184 GT:DS:GL:BD 0.12316850 0 1 26523644 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.899;LDAF=0.1214;AVGPOST=0.9871;RSQ=0.9562;ERATE=0.0004;THETA=0.0006;AC=269;AN=2184 GT:DS:GL:BD 0.12316850 0 1 26523688 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0064;AVGPOST=0.9997;RSQ=0.9760;ERATE=0.0003;THETA=0.0011;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26523744 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26524002 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8843;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26524016 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7145;AVGPOST=0.9994;RSQ=0.9988;ERATE=0.0004;THETA=0.0031;AC=1559;AN=2184 GT:DS:GL:BD 0.71382785 1 1 26524078 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=1.0000;RSQ=0.9970;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26524123 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26524201 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26524225 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26524280 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0092;AVGPOST=0.9999;RSQ=0.9952;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26524302 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26524318 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26524384 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0124;AVGPOST=0.9997;RSQ=0.9894;ERATE=0.0004;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26524401 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1407;AVGPOST=0.9995;RSQ=0.9979;ERATE=0.0003;THETA=0.0003;AC=308;AN=2184 GT:DS:GL:BD 0.14102565 0 1 26524450 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26524490 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26524503 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26524520 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0544;AVGPOST=0.9998;RSQ=0.9980;ERATE=0.0003;THETA=0.0003;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 26524534 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26524556 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=1.0000;RSQ=0.9932;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 26524585 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.739;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26524612 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26524616 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26524706 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7152;AVGPOST=0.9999;RSQ=0.9997;ERATE=0.0003;THETA=0.0004;AC=1561;AN=2184 GT:DS:GL:BD 0.71474361 1 1 26524725 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26524749 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26524854 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0110;AVGPOST=0.9999;RSQ=0.9962;ERATE=0.0004;THETA=0.0008;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 26524921 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0036;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26524956 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26524974 . AG A 52 PASS INDEL;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6442;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26525123 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26525295 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26525383 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1494;AVGPOST=0.9986;RSQ=0.9955;ERATE=0.0007;THETA=0.0004;AC=327;AN=2184 GT:DS:GL:BD 0.14972527 0 1 26525485 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0068;AVGPOST=0.9992;RSQ=0.9506;ERATE=0.0005;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26525507 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0029;AVGPOST=0.9985;RSQ=0.7757;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26525514 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.856;LDAF=0.0087;AVGPOST=0.9974;RSQ=0.8825;ERATE=0.0005;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26525559 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.922;LDAF=0.0062;AVGPOST=0.9985;RSQ=0.8941;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26525603 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.674;LDAF=0.0025;AVGPOST=0.9966;RSQ=0.4381;ERATE=0.0007;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26525639 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0122;AVGPOST=0.9993;RSQ=0.9735;ERATE=0.0004;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26525667 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.977;LDAF=0.6988;AVGPOST=0.9668;RSQ=0.9495;ERATE=0.0046;THETA=0.0004;AC=1546;AN=2184 GT:DS:GL:BD 0.70787543 1 1 26525788 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5726;ERATE=0.0005;THETA=0.0038;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26525824 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.953;LDAF=0.2803;AVGPOST=0.9763;RSQ=0.9556;ERATE=0.0035;THETA=0.0038;AC=615;AN=2184 GT:DS:GL:BD 0.28159341 0 1 26525855 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.4277;AVGPOST=0.9927;RSQ=0.9874;ERATE=0.0014;THETA=0.0019;AC=930;AN=2184 GT:DS:GL:BD 0.42582417 0 1 26525872 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.960;LDAF=0.0052;AVGPOST=0.9989;RSQ=0.9110;ERATE=0.0005;THETA=0.0011;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26526098 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0006;AVGPOST=0.9991;RSQ=0.3849;ERATE=0.0004;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26526120 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9997;RSQ=0.9804;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26526217 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2439;AVGPOST=0.9995;RSQ=0.9989;ERATE=0.0004;THETA=0.0003;AC=530;AN=2184 GT:DS:GL:BD 0.24267399 0 1 26526341 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26526348 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1280;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=280;AN=2184 GT:DS:GL:BD 0.12820514 0 1 26526375 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0060;AVGPOST=1.0000;RSQ=0.9963;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 26526439 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1279;AVGPOST=1.0000;RSQ=0.9998;ERATE=0.0003;THETA=0.0005;AC=280;AN=2184 GT:DS:GL:BD 0.12820514 0 1 26526458 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26526539 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26526545 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26526554 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.1848;AVGPOST=0.9996;RSQ=0.9992;ERATE=0.0004;THETA=0.0004;AC=403;AN=2184 GT:DS:GL:BD 0.18452381 0 1 26526585 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26526674 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26526685 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7668;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26526690 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9507;ERATE=0.0004;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 26526718 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9998;RSQ=0.9891;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26526732 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0114;AVGPOST=0.9999;RSQ=0.9961;ERATE=0.0003;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 26526776 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0069;AVGPOST=1.0000;RSQ=0.9972;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26526841 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26527032 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0119;AVGPOST=0.9996;RSQ=0.9838;ERATE=0.0003;THETA=0.0008;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26527056 . TGGGTAGGGTTTATCA T 1588 PASS INDEL;BAVGPOST=0.996;BRSQ=0.744;LDAF=0.0071;AVGPOST=0.9988;RSQ=0.9286;ERATE=0.0004;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26527163 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3566;AVGPOST=0.9985;RSQ=0.9975;ERATE=0.0004;THETA=0.0042;AC=779;AN=2184 GT:DS:GL:BD 0.35668498 0 1 26527207 rs71697047 GGGCCTTA G 26507 PASS INDEL;BAVGPOST=0.977;BRSQ=0.937;LDAF=0.1984;AVGPOST=0.9869;RSQ=0.9718;ERATE=0.0012;THETA=0.0003;AC=437;AN=2184 GT:DS:GL:BD 0.20009157 0 1 26527255 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2048;AVGPOST=0.9990;RSQ=0.9978;ERATE=0.0004;THETA=0.0004;AC=447;AN=2184 GT:DS:GL:BD 0.20467032 0 1 26527260 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2049;AVGPOST=0.9991;RSQ=0.9978;ERATE=0.0003;THETA=0.0007;AC=447;AN=2184 GT:DS:GL:BD 0.20467032 0 1 26527304 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2056;AVGPOST=0.9998;RSQ=0.9994;ERATE=0.0003;THETA=0.0020;AC=448;AN=2184 GT:DS:GL:BD 0.20512821 0 1 26527310 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1950;AVGPOST=0.9997;RSQ=0.9992;ERATE=0.0003;THETA=0.0005;AC=425;AN=2184 GT:DS:GL:BD 0.19459707 0 1 26527325 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26527326 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0018;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 26527367 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26527368 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0039;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26527419 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8665;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26527431 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26527509 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26527640 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 26527649 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9809;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26527658 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0028;AVGPOST=1.0000;RSQ=0.9921;ERATE=0.0003;THETA=0.0045;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26527699 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3588;AVGPOST=0.9928;RSQ=0.9897;ERATE=0.0015;THETA=0.0008;AC=786;AN=2184 GT:DS:GL:BD 0.35989010 0 1 26527783 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.2159;AVGPOST=0.9961;RSQ=0.9911;ERATE=0.0006;THETA=0.0029;AC=471;AN=2184 GT:DS:GL:BD 0.21565934 0 1 26527808 rs34351620 G GC 9965 PASS INDEL;BAVGPOST=0.981;BRSQ=0.947;LDAF=0.1989;AVGPOST=0.9792;RSQ=0.9523;ERATE=0.0014;THETA=0.0005;AC=428;AN=2184 GT:DS:GL:BD 0.19597070 0 1 26527809 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.979;LDAF=0.1895;AVGPOST=0.9894;RSQ=0.9770;ERATE=0.0005;THETA=0.0007;AC=412;AN=2184 GT:DS:GL:BD 0.18864469 0 1 26527810 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.979;LDAF=0.1897;AVGPOST=0.9894;RSQ=0.9769;ERATE=0.0004;THETA=0.0019;AC=411;AN=2184 GT:DS:GL:BD 0.18818681 0 1 26527863 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0827;AVGPOST=0.9998;RSQ=0.9987;ERATE=0.0003;THETA=0.0049;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 26527884 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0339;AVGPOST=0.9996;RSQ=0.9959;ERATE=0.0003;THETA=0.0006;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 26527896 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26527913 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.770;LDAF=0.0069;AVGPOST=0.9938;RSQ=0.6736;ERATE=0.0052;THETA=0.0063;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 26527938 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26527941 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0020;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 26527951 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2148;AVGPOST=0.9984;RSQ=0.9967;ERATE=0.0017;THETA=0.0031;AC=467;AN=2184 GT:DS:GL:BD 0.21382783 0 1 26527998 . TAGCATGGAA T 444 PASS INDEL;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0019;AVGPOST=0.9992;RSQ=0.8152;ERATE=0.0004;THETA=0.0045;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26528020 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0065;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26528433 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.956;LDAF=0.2865;AVGPOST=0.9814;RSQ=0.9664;ERATE=0.0006;THETA=0.0114;AC=626;AN=2184 GT:DS:GL:BD 0.28663003 0 1 26528543 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0037;AVGPOST=0.9997;RSQ=0.9595;ERATE=0.0003;THETA=0.0069;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26528557 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0016;AVGPOST=0.9983;RSQ=0.5586;ERATE=0.0005;THETA=0.0066;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26528592 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7330;ERATE=0.0004;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26528629 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8797;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26528716 . C CA 62 PASS INDEL;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3845;ERATE=0.0006;THETA=0.0051;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26528723 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26528760 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8603;ERATE=0.0019;THETA=0.0059;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26528761 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.975;LDAF=0.0921;AVGPOST=0.9956;RSQ=0.9805;ERATE=0.0016;THETA=0.0026;AC=202;AN=2184 GT:DS:GL:BD 0.09249084 0 1 26528764 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0102;AVGPOST=0.9995;RSQ=0.9792;ERATE=0.0003;THETA=0.0131;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26528770 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26528849 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26528908 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0044;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26528922 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.986;LDAF=0.3631;AVGPOST=0.9900;RSQ=0.9857;ERATE=0.0104;THETA=0.0055;AC=789;AN=2184 GT:DS:GL:BD 0.36126372 0 1 26528963 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0183;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26529061 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0145;AVGPOST=0.9995;RSQ=0.9876;ERATE=0.0003;THETA=0.0097;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 26529121 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.985;LDAF=0.4856;AVGPOST=0.9924;RSQ=0.9887;ERATE=0.0056;THETA=0.0035;AC=1060;AN=2184 GT:DS:GL:BD 0.48534799 0 1 26529193 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8476;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26529204 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0068;AVGPOST=0.9992;RSQ=0.9438;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 26529248 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26529251 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0141;AVGPOST=0.9995;RSQ=0.9853;ERATE=0.0003;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 26529290 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8015;ERATE=0.0004;THETA=0.0048;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26529459 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0056;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26529555 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0031;AVGPOST=0.9987;RSQ=0.8170;ERATE=0.0005;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26529610 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8839;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26529852 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0082;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26530020 . G GA 903 PASS INDEL;BAVGPOST=0.999;BRSQ=0.800;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6192;ERATE=0.0004;THETA=0.0075;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 26530273 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7946;ERATE=0.0005;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26530291 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0106;AVGPOST=0.9998;RSQ=0.9897;ERATE=0.0003;THETA=0.0046;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26530303 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9081;ERATE=0.0003;THETA=0.0030;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26530323 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0123;AVGPOST=0.9990;RSQ=0.9679;ERATE=0.0003;THETA=0.0057;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 26530326 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.817;LDAF=0.0039;AVGPOST=0.9971;RSQ=0.7048;ERATE=0.0008;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 26530445 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26530492 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0004;THETA=0.0060;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26530610 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0076;AVGPOST=0.9995;RSQ=0.9691;ERATE=0.0003;THETA=0.0055;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 26530611 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26530634 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0122;AVGPOST=0.9992;RSQ=0.9685;ERATE=0.0003;THETA=0.0020;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 26530635 . C CT 333 PASS INDEL;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0026;AVGPOST=0.9989;RSQ=0.8186;ERATE=0.0004;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26530819 rs35582967 CT C 18510 PASS INDEL;BAVGPOST=0.992;BRSQ=0.975;LDAF=0.1801;AVGPOST=0.9930;RSQ=0.9814;ERATE=0.0006;THETA=0.0013;AC=394;AN=2184 GT:DS:GL:BD 0.18040293 0 1 26531034 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4538;AVGPOST=0.9969;RSQ=0.9948;ERATE=0.0005;THETA=0.0005;AC=990;AN=2184 GT:DS:GL:BD 0.45329669 0 1 26531062 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6350;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26531181 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26531256 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.988;LDAF=0.2201;AVGPOST=0.9935;RSQ=0.9854;ERATE=0.0007;THETA=0.0006;AC=479;AN=2184 GT:DS:GL:BD 0.21932234 0 1 26531408 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4557;AVGPOST=0.9980;RSQ=0.9966;ERATE=0.0005;THETA=0.0005;AC=995;AN=2184 GT:DS:GL:BD 0.45558608 0 1 26531480 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26531557 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0057;AVGPOST=0.9992;RSQ=0.9433;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 26531595 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26531728 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.871;LDAF=0.0088;AVGPOST=0.9974;RSQ=0.8742;ERATE=0.0006;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 26531743 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0101;AVGPOST=0.9999;RSQ=0.9934;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 26531768 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.938;BRSQ=0.871;LDAF=0.4341;AVGPOST=0.9099;RSQ=0.8421;ERATE=0.0285;THETA=0.0005;AC=964;AN=2184 GT:DS:GL:BD 0.44139194 0 1 26531789 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.987;LDAF=0.4516;AVGPOST=0.9888;RSQ=0.9819;ERATE=0.0027;THETA=0.0004;AC=989;AN=2184 GT:DS:GL:BD 0.45283884 0 1 26531944 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0105;AVGPOST=0.9996;RSQ=0.9838;ERATE=0.0003;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26531956 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4589;AVGPOST=0.9963;RSQ=0.9939;ERATE=0.0007;THETA=0.0004;AC=1001;AN=2184 GT:DS:GL:BD 0.45833334 0 1 26532044 . GC G 106 PASS INDEL;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5436;ERATE=0.0004;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26532311 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.686;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5272;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26532364 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0105;AVGPOST=0.9996;RSQ=0.9825;ERATE=0.0003;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26532843 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0122;AVGPOST=0.9963;RSQ=0.8864;ERATE=0.0006;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26532918 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7172;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26532980 . GA G 50 PASS INDEL;BAVGPOST=0.999;BRSQ=0.816;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6260;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26532996 . G GA 383 PASS INDEL;BAVGPOST=0.983;BRSQ=0.663;LDAF=0.0387;AVGPOST=0.9596;RSQ=0.5808;ERATE=0.0064;THETA=0.0004;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 26533031 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.669;LDAF=0.0019;AVGPOST=0.9978;RSQ=0.5305;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26533200 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0021;AVGPOST=0.9988;RSQ=0.7412;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26533271 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.918;LDAF=0.0108;AVGPOST=0.9990;RSQ=0.9562;ERATE=0.0005;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 26533325 . C CAAAT 1722 PASS INDEL;BAVGPOST=0.993;BRSQ=0.835;LDAF=0.0178;AVGPOST=0.9939;RSQ=0.8655;ERATE=0.0008;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 26533377 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0028;AVGPOST=0.9975;RSQ=0.6104;ERATE=0.0006;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26533540 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0029;AVGPOST=0.9980;RSQ=0.7132;ERATE=0.0003;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26533567 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6442;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26533730 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.374;LDAF=0.0116;AVGPOST=0.9852;RSQ=0.5329;ERATE=0.0024;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 26533811 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.924;LDAF=0.0465;AVGPOST=0.9974;RSQ=0.9739;ERATE=0.0005;THETA=0.0004;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 26533979 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0373;AVGPOST=0.9974;RSQ=0.9709;ERATE=0.0004;THETA=0.0006;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 26533997 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.767;LDAF=0.0104;AVGPOST=0.9944;RSQ=0.7746;ERATE=0.0006;THETA=0.0007;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 26534048 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.566;LDAF=0.0202;AVGPOST=0.9702;RSQ=0.4091;ERATE=0.0051;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 26534058 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.597;LDAF=0.0095;AVGPOST=0.9867;RSQ=0.4083;ERATE=0.0029;THETA=0.0025;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 26534123 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0189;AVGPOST=0.9987;RSQ=0.9688;ERATE=0.0005;THETA=0.0010;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 26534132 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.915;LDAF=0.0929;AVGPOST=0.9948;RSQ=0.9751;ERATE=0.0005;THETA=0.0003;AC=202;AN=2184 GT:DS:GL:BD 0.09249084 0 1 26534217 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.1821;AVGPOST=0.9968;RSQ=0.9904;ERATE=0.0007;THETA=0.0006;AC=397;AN=2184 GT:DS:GL:BD 0.18177655 0 1 26534325 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4699;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26534431 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7762;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26534512 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0023;AVGPOST=0.9997;RSQ=0.9458;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 26534636 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6362;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 26534747 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6071;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 26534821 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.764;LDAF=0.0019;AVGPOST=0.9992;RSQ=0.8262;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 26534986 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0