1092 10000 1 57891958 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.970;LDAF=0.1189;AVGPOST=0.9973;RSQ=0.9903;ERATE=0.0003;THETA=0.0006;AC=259;AN=2184 GT:DS:GL:BD 0.11858974 0 1 57891988 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6474;ERATE=0.0005;THETA=0.0055;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57892041 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.5413;ERATE=0.0004;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57892067 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57892357 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1329;AVGPOST=0.9977;RSQ=0.9928;ERATE=0.0004;THETA=0.0006;AC=290;AN=2184 GT:DS:GL:BD 0.13278389 0 1 57892436 . TA T 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.674;LDAF=0.0018;AVGPOST=0.9975;RSQ=0.5175;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57892480 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7306;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57892542 . A AT 27 PASS INDEL;BAVGPOST=0.998;BRSQ=0.359;LDAF=0.0039;AVGPOST=0.9961;RSQ=0.5968;ERATE=0.0005;THETA=0.0046;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57892544 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.894;LDAF=0.0317;AVGPOST=0.9911;RSQ=0.8943;ERATE=0.0008;THETA=0.0042;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 57892546 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.958;BRSQ=0.693;LDAF=0.1122;AVGPOST=0.8878;RSQ=0.5743;ERATE=0.0201;THETA=0.0012;AC=162;AN=2184 GT:DS:GL:BD 0.07417583 0 1 57892548 . T TA 14 PASS INDEL;BAVGPOST=0.986;BRSQ=0.371;LDAF=0.0160;AVGPOST=0.9851;RSQ=0.6794;ERATE=0.0011;THETA=0.0010;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 57892874 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0047;AVGPOST=0.9987;RSQ=0.8929;ERATE=0.0003;THETA=0.0042;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 57892876 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.973;LDAF=0.1318;AVGPOST=0.9967;RSQ=0.9891;ERATE=0.0005;THETA=0.0013;AC=288;AN=2184 GT:DS:GL:BD 0.13186814 0 1 57892924 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.1907;AVGPOST=0.9963;RSQ=0.9912;ERATE=0.0005;THETA=0.0006;AC=415;AN=2184 GT:DS:GL:BD 0.19001831 0 1 57893250 rs34170485 AG A 20176 PASS INDEL;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2222;AVGPOST=0.9904;RSQ=0.9780;ERATE=0.0005;THETA=0.0010;AC=487;AN=2184 GT:DS:GL:BD 0.22298534 0 1 57893265 . GTAT G 252 PASS INDEL;BAVGPOST=1.000;BRSQ=0.758;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4550;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57893324 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1098;AVGPOST=0.9972;RSQ=0.9886;ERATE=0.0003;THETA=0.0005;AC=238;AN=2184 GT:DS:GL:BD 0.10897436 0 1 57893351 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5383;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57893416 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57893470 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.986;LDAF=0.1589;AVGPOST=0.9973;RSQ=0.9936;ERATE=0.0003;THETA=0.0004;AC=348;AN=2184 GT:DS:GL:BD 0.15934066 0 1 57893528 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8580;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57893542 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6555;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57893544 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0063;AVGPOST=0.9982;RSQ=0.8794;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 57893549 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6542;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57893654 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.962;LDAF=0.0258;AVGPOST=0.9987;RSQ=0.9767;ERATE=0.0004;THETA=0.0002;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 57893696 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4723;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57893697 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.734;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.5207;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57893783 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0138;AVGPOST=0.9965;RSQ=0.8995;ERATE=0.0006;THETA=0.0008;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 57893788 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.957;LDAF=0.4000;AVGPOST=0.9602;RSQ=0.9390;ERATE=0.0059;THETA=0.0004;AC=880;AN=2184 GT:DS:GL:BD 0.40293041 0 1 57893800 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57893972 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0256;AVGPOST=0.9998;RSQ=0.9966;ERATE=0.0003;THETA=0.0005;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 57893973 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0316;AVGPOST=0.9988;RSQ=0.9863;ERATE=0.0003;THETA=0.0005;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 57893979 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6043;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57894108 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57894126 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.729;LDAF=0.0024;AVGPOST=0.9986;RSQ=0.7411;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57894195 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57894259 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1274;AVGPOST=0.9979;RSQ=0.9942;ERATE=0.0003;THETA=0.0002;AC=277;AN=2184 GT:DS:GL:BD 0.12683150 0 1 57894341 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0086;AVGPOST=0.9992;RSQ=0.9648;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 57894408 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0029;AVGPOST=0.9985;RSQ=0.7996;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57894440 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5619;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57894548 . CTGTT C 320 PASS INDEL;BAVGPOST=0.999;BRSQ=0.761;LDAF=0.0030;AVGPOST=0.9983;RSQ=0.7651;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57894570 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0339;AVGPOST=0.9969;RSQ=0.9665;ERATE=0.0009;THETA=0.0004;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 57894572 . TG T 4881 PASS INDEL;BAVGPOST=0.883;BRSQ=0.668;LDAF=0.2179;AVGPOST=0.8923;RSQ=0.7759;ERATE=0.0095;THETA=0.0004;AC=483;AN=2184 GT:DS:GL:BD 0.22115384 0 1 57894573 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.946;BRSQ=0.878;LDAF=0.2823;AVGPOST=0.9275;RSQ=0.8663;ERATE=0.0191;THETA=0.0008;AC=601;AN=2184 GT:DS:GL:BD 0.27518314 0 1 57894639 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5709;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57894644 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0091;AVGPOST=0.9969;RSQ=0.8788;ERATE=0.0004;THETA=0.0008;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 57894649 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5385;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57894711 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5563;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57894779 . G GC 23 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7202;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57894805 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.877;LDAF=0.0143;AVGPOST=0.9966;RSQ=0.9018;ERATE=0.0004;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 57894839 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0138;AVGPOST=0.9995;RSQ=0.9823;ERATE=0.0003;THETA=0.0002;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 57894875 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0268;AVGPOST=0.9993;RSQ=0.9878;ERATE=0.0006;THETA=0.0016;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 57894962 . C CA 2378 PASS INDEL;BAVGPOST=0.998;BRSQ=0.958;LDAF=0.0188;AVGPOST=0.9981;RSQ=0.9585;ERATE=0.0008;THETA=0.0009;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 57894991 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0261;AVGPOST=0.9990;RSQ=0.9889;ERATE=0.0003;THETA=0.0008;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 57895031 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0153;AVGPOST=0.9995;RSQ=0.9855;ERATE=0.0004;THETA=0.0002;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 57895134 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.889;LDAF=0.0049;AVGPOST=0.9993;RSQ=0.9300;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 57895210 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0256;AVGPOST=0.9999;RSQ=0.9974;ERATE=0.0003;THETA=0.0007;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 57895214 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.990;LDAF=0.4510;AVGPOST=0.9878;RSQ=0.9827;ERATE=0.0012;THETA=0.0006;AC=985;AN=2184 GT:DS:GL:BD 0.45100734 0 1 57895303 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.789;LDAF=0.0032;AVGPOST=0.9976;RSQ=0.6847;ERATE=0.0007;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57895474 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57895572 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8481;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57895621 . A AG 8344 PASS INDEL;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0417;AVGPOST=0.9918;RSQ=0.9213;ERATE=0.0003;THETA=0.0005;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 57895623 . G GA 13 PASS INDEL;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0022;AVGPOST=0.9980;RSQ=0.6292;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57895703 . T TA 2040 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0161;AVGPOST=0.9998;RSQ=0.9933;ERATE=0.0003;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 57895739 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0162;AVGPOST=0.9996;RSQ=0.9892;ERATE=0.0003;THETA=0.0010;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 57895755 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.860;LDAF=0.0367;AVGPOST=0.9878;RSQ=0.8798;ERATE=0.0003;THETA=0.0003;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 57895838 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0321;AVGPOST=0.9996;RSQ=0.9950;ERATE=0.0003;THETA=0.0004;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 57895843 rs112392005 T TTC 14810 PASS INDEL;BAVGPOST=0.988;BRSQ=0.942;LDAF=0.0960;AVGPOST=0.9912;RSQ=0.9627;ERATE=0.0013;THETA=0.0002;AC=203;AN=2184 GT:DS:GL:BD 0.09294872 0 1 57895846 . A AGT 91 PASS INDEL;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0061;AVGPOST=0.9971;RSQ=0.7926;ERATE=0.0009;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 57895847 . G GTC 120 PASS INDEL;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0064;AVGPOST=0.9960;RSQ=0.7239;ERATE=0.0012;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 57895932 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.9984;AVGPOST=0.9994;RSQ=0.8175;ERATE=0.0003;THETA=0.0002;AC=2181;AN=2184 GT:DS:GL:BD 0.99862635 1 1 57895951 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6008;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57895988 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1349;AVGPOST=0.9993;RSQ=0.9975;ERATE=0.0003;THETA=0.0001;AC=293;AN=2184 GT:DS:GL:BD 0.13415751 0 1 57896052 . T TC 44 PASS INDEL;BAVGPOST=0.999;BRSQ=0.568;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4363;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57896108 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.460;LDAF=0.0076;AVGPOST=0.9900;RSQ=0.5394;ERATE=0.0008;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 57896117 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.936;LDAF=0.1355;AVGPOST=0.9944;RSQ=0.9815;ERATE=0.0007;THETA=0.0002;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 57896160 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.948;LDAF=0.0944;AVGPOST=0.9976;RSQ=0.9878;ERATE=0.0005;THETA=0.0004;AC=203;AN=2184 GT:DS:GL:BD 0.09294872 0 1 57896307 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0091;AVGPOST=0.9989;RSQ=0.9412;ERATE=0.0005;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 57896354 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.618;LDAF=0.0045;AVGPOST=0.9941;RSQ=0.5484;ERATE=0.0005;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57896467 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0075;AVGPOST=0.9996;RSQ=0.9765;ERATE=0.0004;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 57896646 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0258;AVGPOST=0.9995;RSQ=0.9915;ERATE=0.0004;THETA=0.0003;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 57896696 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.5067;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57896734 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0321;AVGPOST=0.9996;RSQ=0.9950;ERATE=0.0004;THETA=0.0003;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 57896745 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0115;AVGPOST=0.9986;RSQ=0.9502;ERATE=0.0004;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 57896788 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5980;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57896790 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0320;AVGPOST=0.9999;RSQ=0.9981;ERATE=0.0003;THETA=0.0005;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 57896825 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.882;LDAF=0.0192;AVGPOST=0.9943;RSQ=0.8930;ERATE=0.0003;THETA=0.0011;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 57896933 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4792;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57897088 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57897095 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.573;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5068;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57897126 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57897149 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5871;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57897199 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0065;AVGPOST=0.9992;RSQ=0.9483;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 57897245 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7457;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57897383 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9600;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57897391 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.6957;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57897517 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6505;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57897756 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.4161;AVGPOST=0.9956;RSQ=0.9925;ERATE=0.0004;THETA=0.0003;AC=909;AN=2184 GT:DS:GL:BD 0.41620880 0 1 57897787 . C CTG 18 PASS INDEL;BAVGPOST=0.997;BRSQ=0.544;LDAF=0.0048;AVGPOST=0.9968;RSQ=0.7299;ERATE=0.0008;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57897812 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0164;AVGPOST=0.9982;RSQ=0.9624;ERATE=0.0003;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 57897829 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6088;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57897910 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=1.0000;RSQ=0.9970;ERATE=0.0003;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 57897969 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.603;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7012;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57898077 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.5578;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57898183 . G GA 22 PASS INDEL;BAVGPOST=0.999;BRSQ=0.672;LDAF=0.0035;AVGPOST=0.9967;RSQ=0.6276;ERATE=0.0007;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57898225 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6525;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57898277 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5857;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57898578 . CAG C 343 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0029;AVGPOST=0.9992;RSQ=0.8951;ERATE=0.0003;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57898599 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57898693 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0202;AVGPOST=0.9989;RSQ=0.9754;ERATE=0.0004;THETA=0.0006;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 57898731 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1345;AVGPOST=0.9995;RSQ=0.9980;ERATE=0.0003;THETA=0.0006;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 57898791 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5521;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57898929 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.609;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57898968 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0045;AVGPOST=0.9988;RSQ=0.8907;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 57898997 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.967;LDAF=0.0234;AVGPOST=0.9978;RSQ=0.9648;ERATE=0.0003;THETA=0.0004;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 57899058 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5141;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57899063 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.772;LDAF=0.0069;AVGPOST=0.9971;RSQ=0.8335;ERATE=0.0004;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 57899083 . T TC 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4232;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57899169 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.549;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.5096;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57899394 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0940;AVGPOST=0.9991;RSQ=0.9954;ERATE=0.0004;THETA=0.0003;AC=203;AN=2184 GT:DS:GL:BD 0.09294872 0 1 57899600 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.697;LDAF=0.0026;AVGPOST=0.9970;RSQ=0.5917;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57899648 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4689;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57899808 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0048;AVGPOST=0.9986;RSQ=0.9067;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 57899939 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9554;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 57899955 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=0.9999;RSQ=0.9910;ERATE=0.0003;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 57899976 . GA G 28 PASS INDEL;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4074;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57900011 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0319;AVGPOST=0.9995;RSQ=0.9926;ERATE=0.0004;THETA=0.0004;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 57900035 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9073;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57900118 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0051;AVGPOST=0.9990;RSQ=0.9145;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 57900249 . TGTACC T 135 PASS INDEL;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6231;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57900404 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2251;AVGPOST=0.9963;RSQ=0.9920;ERATE=0.0004;THETA=0.0003;AC=491;AN=2184 GT:DS:GL:BD 0.22481684 0 1 57900418 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4148;AVGPOST=0.9957;RSQ=0.9933;ERATE=0.0005;THETA=0.0003;AC=906;AN=2184 GT:DS:GL:BD 0.41483516 0 1 57900464 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.960;LDAF=0.0322;AVGPOST=0.9992;RSQ=0.9901;ERATE=0.0003;THETA=0.0006;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 57900496 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7113;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57900520 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7986;ERATE=0.0005;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57900592 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1912;AVGPOST=0.9990;RSQ=0.9973;ERATE=0.0004;THETA=0.0003;AC=416;AN=2184 GT:DS:GL:BD 0.19047619 0 1 57900599 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0032;AVGPOST=0.9996;RSQ=0.9483;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 57900629 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8241;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57900711 . TTTTTTTC T 9031 PASS INDEL;BAVGPOST=0.965;BRSQ=0.907;LDAF=0.2247;AVGPOST=0.9571;RSQ=0.9056;ERATE=0.0065;THETA=0.0007;AC=487;AN=2184 GT:DS:GL:BD 0.22298534 0 1 57900778 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0160;AVGPOST=0.9965;RSQ=0.9218;ERATE=0.0004;THETA=0.0021;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 57900966 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.944;LDAF=0.0728;AVGPOST=0.9933;RSQ=0.9647;ERATE=0.0004;THETA=0.0004;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 57900987 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0294;AVGPOST=0.9957;RSQ=0.9415;ERATE=0.0005;THETA=0.0004;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 57901003 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.1011;AVGPOST=0.9968;RSQ=0.9871;ERATE=0.0005;THETA=0.0005;AC=217;AN=2184 GT:DS:GL:BD 0.09935898 0 1 57901011 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.1327;AVGPOST=0.9969;RSQ=0.9908;ERATE=0.0005;THETA=0.0004;AC=287;AN=2184 GT:DS:GL:BD 0.13141026 0 1 57901014 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9405;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 57901080 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5045;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57901096 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.4491;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57901164 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0033;AVGPOST=0.9991;RSQ=0.9000;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 57901375 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0088;AVGPOST=0.9993;RSQ=0.9628;ERATE=0.0003;THETA=0.0020;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 57901481 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5569;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57901515 . CAT C 21 PASS INDEL;BAVGPOST=1.000;BRSQ=0.746;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5229;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57901784 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.944;LDAF=0.1467;AVGPOST=0.9866;RSQ=0.9653;ERATE=0.0006;THETA=0.0005;AC=324;AN=2184 GT:DS:GL:BD 0.14835165 0 1 57901789 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.945;LDAF=0.1479;AVGPOST=0.9886;RSQ=0.9706;ERATE=0.0005;THETA=0.0013;AC=324;AN=2184 GT:DS:GL:BD 0.14835165 0 1 57901879 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.949;LDAF=0.1229;AVGPOST=0.9879;RSQ=0.9654;ERATE=0.0006;THETA=0.0002;AC=268;AN=2184 GT:DS:GL:BD 0.12271062 0 1 57901880 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.949;LDAF=0.1231;AVGPOST=0.9887;RSQ=0.9679;ERATE=0.0005;THETA=0.0003;AC=269;AN=2184 GT:DS:GL:BD 0.12316850 0 1 57901885 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0033;AVGPOST=0.9961;RSQ=0.5154;ERATE=0.0008;THETA=0.0056;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57902007 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0189;AVGPOST=0.9997;RSQ=0.9930;ERATE=0.0003;THETA=0.0004;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 57902008 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57902020 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57902034 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.916;LDAF=0.0088;AVGPOST=0.9977;RSQ=0.8831;ERATE=0.0004;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 57902064 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9681;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 57902067 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57902150 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0050;AVGPOST=0.9995;RSQ=0.9536;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 57902179 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.659;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57902182 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5721;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57902247 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57902320 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57902325 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9858;ERATE=0.0003;THETA=0.0011;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 57902467 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0059;AVGPOST=0.9986;RSQ=0.8927;ERATE=0.0005;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 57902523 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.718;LDAF=0.0084;AVGPOST=0.9954;RSQ=0.8071;ERATE=0.0004;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 57902651 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0046;AVGPOST=0.9995;RSQ=0.9480;ERATE=0.0004;THETA=0.0021;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 57902911 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.666;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5086;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57902957 . GA G 129 PASS INDEL;BAVGPOST=0.999;BRSQ=0.678;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7034;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57903054 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.803;LDAF=0.0107;AVGPOST=0.9965;RSQ=0.8700;ERATE=0.0004;THETA=0.0021;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 57903076 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0020;AVGPOST=0.9981;RSQ=0.6290;ERATE=0.0006;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57903102 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4094;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57903186 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0294;AVGPOST=0.9958;RSQ=0.9451;ERATE=0.0005;THETA=0.0004;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 57903190 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6395;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57903319 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5496;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57903337 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57903379 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.853;LDAF=0.0051;AVGPOST=0.9962;RSQ=0.6848;ERATE=0.0003;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57903486 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57903504 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0064;AVGPOST=0.9997;RSQ=0.9773;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 57903662 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7793;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57903776 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0320;AVGPOST=0.9989;RSQ=0.9856;ERATE=0.0003;THETA=0.0007;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 57903805 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0054;AVGPOST=0.9992;RSQ=0.9367;ERATE=0.0005;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 57903839 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.629;LDAF=0.0216;AVGPOST=0.9771;RSQ=0.5811;ERATE=0.0081;THETA=0.0011;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 57903916 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1606;AVGPOST=0.9976;RSQ=0.9936;ERATE=0.0004;THETA=0.0005;AC=350;AN=2184 GT:DS:GL:BD 0.16025642 0 1 57903979 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0075;AVGPOST=0.9995;RSQ=0.9729;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 57903981 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57903996 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1565;AVGPOST=0.9977;RSQ=0.9938;ERATE=0.0003;THETA=0.0050;AC=340;AN=2184 GT:DS:GL:BD 0.15567766 0 1 57904037 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8957;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57904244 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3273;AVGPOST=0.9970;RSQ=0.9946;ERATE=0.0005;THETA=0.0016;AC=716;AN=2184 GT:DS:GL:BD 0.32783884 0 1 57904257 . AAGG A 2239 PASS INDEL;BAVGPOST=0.998;BRSQ=0.951;LDAF=0.0218;AVGPOST=0.9922;RSQ=0.8558;ERATE=0.0010;THETA=0.0007;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 57904274 . AGAG A 15 PASS INDEL;BAVGPOST=0.999;BRSQ=0.614;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0043;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57904369 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0204;AVGPOST=0.9985;RSQ=0.9702;ERATE=0.0003;THETA=0.0002;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 57904423 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8371;ERATE=0.0004;THETA=0.0027;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57904502 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57904574 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0041;AVGPOST=0.9988;RSQ=0.9034;ERATE=0.0003;THETA=0.0013;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57904580 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0063;AVGPOST=0.9996;RSQ=0.9758;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 57904590 . G GA 571 PASS INDEL;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0047;AVGPOST=0.9986;RSQ=0.8696;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 57904628 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8888;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57904663 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0940;AVGPOST=0.9990;RSQ=0.9950;ERATE=0.0003;THETA=0.0003;AC=203;AN=2184 GT:DS:GL:BD 0.09294872 0 1 57904728 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0968;AVGPOST=0.9979;RSQ=0.9906;ERATE=0.0004;THETA=0.0003;AC=210;AN=2184 GT:DS:GL:BD 0.09615385 0 1 57904853 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3646;AVGPOST=0.9979;RSQ=0.9962;ERATE=0.0005;THETA=0.0006;AC=798;AN=2184 GT:DS:GL:BD 0.36538461 0 1 57904964 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3339;AVGPOST=0.9962;RSQ=0.9934;ERATE=0.0008;THETA=0.0059;AC=731;AN=2184 GT:DS:GL:BD 0.33470696 0 1 57904979 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6889;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57905013 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0069;AVGPOST=0.9991;RSQ=0.9438;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 57905040 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7607;ERATE=0.0012;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57905097 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.899;BRSQ=0.796;LDAF=0.4101;AVGPOST=0.8368;RSQ=0.7136;ERATE=0.0551;THETA=0.0005;AC=886;AN=2184 GT:DS:GL:BD 0.40567765 0 1 57905104 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.883;LDAF=0.0908;AVGPOST=0.9667;RSQ=0.8497;ERATE=0.0028;THETA=0.0025;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 57905111 . T TG 90 PASS INDEL;BAVGPOST=0.974;BRSQ=0.320;LDAF=0.0184;AVGPOST=0.9765;RSQ=0.4847;ERATE=0.0010;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 57905121 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.921;BRSQ=0.787;LDAF=0.2147;AVGPOST=0.9257;RSQ=0.8397;ERATE=0.0075;THETA=0.0007;AC=442;AN=2184 GT:DS:GL:BD 0.20238096 0 1 57905294 . G GT 422 PASS INDEL;BAVGPOST=0.912;BRSQ=0.416;LDAF=0.0952;AVGPOST=0.9014;RSQ=0.5845;ERATE=0.0033;THETA=0.0002;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 57905301 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.913;BRSQ=0.519;LDAF=0.0930;AVGPOST=0.9250;RSQ=0.6969;ERATE=0.0012;THETA=0.0005;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 57905315 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.916;BRSQ=0.548;LDAF=0.1007;AVGPOST=0.9303;RSQ=0.7390;ERATE=0.0007;THETA=0.0003;AC=187;AN=2184 GT:DS:GL:BD 0.08562271 0 1 57905326 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.895;BRSQ=0.589;LDAF=0.1077;AVGPOST=0.9218;RSQ=0.7223;ERATE=0.0006;THETA=0.0007;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 57905341 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.866;BRSQ=0.687;LDAF=0.2156;AVGPOST=0.8733;RSQ=0.7543;ERATE=0.0037;THETA=0.0004;AC=452;AN=2184 GT:DS:GL:BD 0.20695971 0 1 57905342 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.866;BRSQ=0.687;LDAF=0.2010;AVGPOST=0.8777;RSQ=0.7493;ERATE=0.0029;THETA=0.0007;AC=402;AN=2184 GT:DS:GL:BD 0.18406594 0 1 57905395 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0312;AVGPOST=0.9981;RSQ=0.9758;ERATE=0.0003;THETA=0.0006;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 57905418 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9417;ERATE=0.0004;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 57905491 rs112926064 CAAT C 136 PASS INDEL;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6077;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57905700 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57905716 . TG T 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5446;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57905741 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5758;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57906041 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57906045 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0298;AVGPOST=0.9996;RSQ=0.9948;ERATE=0.0003;THETA=0.0003;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 57906089 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5666;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57906232 . AGGAG A 701 PASS INDEL;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0054;AVGPOST=0.9992;RSQ=0.9320;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 57906235 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0052;AVGPOST=0.9991;RSQ=0.9261;ERATE=0.0004;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 57906303 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0062;AVGPOST=0.9984;RSQ=0.8943;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 57906394 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6589;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57906404 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57906405 . AC A 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6623;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57906423 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0266;AVGPOST=0.9991;RSQ=0.9859;ERATE=0.0004;THETA=0.0005;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 57906447 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57906476 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0782;AVGPOST=0.9977;RSQ=0.9868;ERATE=0.0004;THETA=0.0005;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 57906490 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.681;LDAF=0.0034;AVGPOST=0.9986;RSQ=0.8524;ERATE=0.0004;THETA=0.0020;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 57906662 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57906669 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.733;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6580;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57906832 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0021;AVGPOST=0.9976;RSQ=0.5459;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57906840 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.3079;AVGPOST=0.9945;RSQ=0.9907;ERATE=0.0006;THETA=0.0003;AC=674;AN=2184 GT:DS:GL:BD 0.30860806 0 1 57906848 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0247;AVGPOST=0.9992;RSQ=0.9862;ERATE=0.0003;THETA=0.0009;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 57906875 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7625;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57907018 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.0578;ERATE=0.0004;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 57907039 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.944;LDAF=0.0178;AVGPOST=0.9983;RSQ=0.9605;ERATE=0.0004;THETA=0.0003;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 57907130 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.604;LDAF=0.0031;AVGPOST=0.9969;RSQ=0.6632;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57907214 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.782;LDAF=0.0020;AVGPOST=0.9976;RSQ=0.5182;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57907305 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0019;AVGPOST=0.9985;RSQ=0.6561;ERATE=0.0006;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57907355 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7781;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57907481 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0254;AVGPOST=0.9987;RSQ=0.9798;ERATE=0.0005;THETA=0.0004;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 57907694 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.3725;AVGPOST=0.9942;RSQ=0.9908;ERATE=0.0005;THETA=0.0002;AC=814;AN=2184 GT:DS:GL:BD 0.37271062 0 1 57907779 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0065;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57907870 . AT A 14 PASS INDEL;BAVGPOST=0.999;BRSQ=0.700;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5313;ERATE=0.0006;THETA=0.0041;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57907936 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57908147 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6497;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57908170 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.973;LDAF=0.0252;AVGPOST=0.9980;RSQ=0.9750;ERATE=0.0004;THETA=0.0119;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 57908254 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57908368 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0116;AVGPOST=0.9974;RSQ=0.9287;ERATE=0.0005;THETA=0.0029;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 57908603 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6409;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57908667 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.742;LDAF=0.0021;AVGPOST=0.9990;RSQ=0.7861;ERATE=0.0003;THETA=0.0088;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57908765 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0029;AVGPOST=0.9992;RSQ=0.8797;ERATE=0.0005;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57908791 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.985;LDAF=0.0286;AVGPOST=0.9988;RSQ=0.9845;ERATE=0.0003;THETA=0.0007;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 57908808 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8681;ERATE=0.0003;THETA=0.0098;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57908858 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0031;AVGPOST=0.9995;RSQ=0.9452;ERATE=0.0003;THETA=0.0045;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 57909056 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9469;ERATE=0.0003;THETA=0.0047;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57909235 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0170;AVGPOST=0.9995;RSQ=0.9875;ERATE=0.0003;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 57909326 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.9026;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57909382 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0058;AVGPOST=0.9992;RSQ=0.9478;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 57909444 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0194;AVGPOST=0.9994;RSQ=0.9866;ERATE=0.0004;THETA=0.0021;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 57909453 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0031;AVGPOST=0.9998;RSQ=0.9741;ERATE=0.0003;THETA=0.0013;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 57909466 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.971;LDAF=0.0243;AVGPOST=0.9981;RSQ=0.9663;ERATE=0.0004;THETA=0.0066;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 57909581 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.4901;AVGPOST=0.9950;RSQ=0.9928;ERATE=0.0004;THETA=0.0030;AC=1069;AN=2184 GT:DS:GL:BD 0.48946887 0 1 57909722 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6088;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57909724 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0247;AVGPOST=0.9998;RSQ=0.9965;ERATE=0.0003;THETA=0.0004;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 57909828 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0073;AVGPOST=0.9984;RSQ=0.9175;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 57909829 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6211;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57909846 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0035;AVGPOST=0.9993;RSQ=0.9185;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57910009 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0770;AVGPOST=0.9957;RSQ=0.9788;ERATE=0.0004;THETA=0.0004;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 57910055 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0051;AVGPOST=0.9993;RSQ=0.9355;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 57910243 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.967;LDAF=0.0328;AVGPOST=0.9984;RSQ=0.9783;ERATE=0.0003;THETA=0.0008;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 57910424 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57910441 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57910454 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0031;AVGPOST=0.9996;RSQ=0.9445;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 57910497 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57910520 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.5886;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57910539 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8483;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57910556 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.499;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5518;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57910644 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0247;AVGPOST=0.9999;RSQ=0.9973;ERATE=0.0003;THETA=0.0003;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 57910670 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57910739 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4822;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57910796 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.860;LDAF=0.0074;AVGPOST=0.9964;RSQ=0.8064;ERATE=0.0005;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 57910800 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.913;LDAF=0.0105;AVGPOST=0.9969;RSQ=0.8742;ERATE=0.0005;THETA=0.0030;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 57910902 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0053;AVGPOST=0.9971;RSQ=0.7927;ERATE=0.0005;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 57911068 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.8945;ERATE=0.0004;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57911085 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.806;LDAF=0.0019;AVGPOST=0.9993;RSQ=0.8410;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57911134 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5526;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57911256 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.556;LDAF=0.0024;AVGPOST=0.9969;RSQ=0.5573;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57911289 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=0.9988;RSQ=0.9302;ERATE=0.0004;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 57911450 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5227;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57911451 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0044;AVGPOST=0.9986;RSQ=0.8739;ERATE=0.0005;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 57911452 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5882;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57911555 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6983;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57911600 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0034;AVGPOST=0.9991;RSQ=0.9154;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57911614 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0133;AVGPOST=0.9987;RSQ=0.9552;ERATE=0.0004;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 57911657 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.6498;AVGPOST=0.9935;RSQ=0.9894;ERATE=0.0007;THETA=0.0008;AC=1418;AN=2184 GT:DS:GL:BD 0.64926738 1 1 57911707 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7027;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57911710 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0020;AVGPOST=0.9974;RSQ=0.5394;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57911768 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57911835 . T TC 36 PASS INDEL;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6624;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57912012 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.745;LDAF=0.0026;AVGPOST=0.9974;RSQ=0.5592;ERATE=0.0008;THETA=0.0020;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57912185 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.597;LDAF=0.0068;AVGPOST=0.9941;RSQ=0.6327;ERATE=0.0008;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 57912268 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.956;BRSQ=0.920;LDAF=0.6268;AVGPOST=0.9271;RSQ=0.8887;ERATE=0.0094;THETA=0.0004;AC=1408;AN=2184 GT:DS:GL:BD 0.64468867 1 1 57912281 . A AG 209 PASS INDEL;BAVGPOST=1.000;BRSQ=0.697;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3541;ERATE=0.0007;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57912367 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0050;AVGPOST=0.9984;RSQ=0.8680;ERATE=0.0007;THETA=0.0022;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 57912531 . TACTC T 40 PASS INDEL;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0040;AVGPOST=0.9964;RSQ=0.6373;ERATE=0.0006;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 57912543 . A AT 131 PASS INDEL;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0040;AVGPOST=0.9984;RSQ=0.8245;ERATE=0.0006;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 57912550 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.950;LDAF=0.0133;AVGPOST=0.9993;RSQ=0.9776;ERATE=0.0004;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 57912734 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0027;AVGPOST=0.9979;RSQ=0.7445;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57912866 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.4728;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 57912926 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.4720;AVGPOST=0.9948;RSQ=0.9926;ERATE=0.0011;THETA=0.0057;AC=1030;AN=2184 GT:DS:GL:BD 0.47161171 0 1 57913098 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0255;AVGPOST=0.9985;RSQ=0.9753;ERATE=0.0005;THETA=0.0040;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 57913213 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.863;LDAF=0.0053;AVGPOST=0.9986;RSQ=0.8898;ERATE=0.0004;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 57913227 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.4050;AVGPOST=0.9899;RSQ=0.9853;ERATE=0.0027;THETA=0.0003;AC=882;AN=2184 GT:DS:GL:BD 0.40384614 0 1 57913265 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7298;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57913272 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.6910;AVGPOST=0.9950;RSQ=0.9911;ERATE=0.0004;THETA=0.0015;AC=1508;AN=2184 GT:DS:GL:BD 0.69047618 1 1 57913291 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57913332 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6569;ERATE=0.0003;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57913335 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0056;AVGPOST=0.9979;RSQ=0.8553;ERATE=0.0003;THETA=0.0048;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 57913387 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0030;AVGPOST=0.9991;RSQ=0.8782;ERATE=0.0004;THETA=0.0081;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57913423 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0204;AVGPOST=0.9981;RSQ=0.9619;ERATE=0.0008;THETA=0.0003;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 57913696 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.749;LDAF=0.0029;AVGPOST=0.9973;RSQ=0.6456;ERATE=0.0007;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57913703 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.993;LDAF=0.4038;AVGPOST=0.9953;RSQ=0.9928;ERATE=0.0005;THETA=0.0003;AC=882;AN=2184 GT:DS:GL:BD 0.40384614 0 1 57913731 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0120;AVGPOST=0.9998;RSQ=0.9931;ERATE=0.0003;THETA=0.0066;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 57913774 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.987;LDAF=0.7400;AVGPOST=0.9947;RSQ=0.9910;ERATE=0.0008;THETA=0.0005;AC=1614;AN=2184 GT:DS:GL:BD 0.73901099 1 1 57913852 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.797;LDAF=0.0026;AVGPOST=0.9988;RSQ=0.7905;ERATE=0.0005;THETA=0.0017;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57913886 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.964;LDAF=0.0673;AVGPOST=0.9975;RSQ=0.9850;ERATE=0.0003;THETA=0.0059;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 57914073 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.853;LDAF=0.0038;AVGPOST=0.9989;RSQ=0.8861;ERATE=0.0004;THETA=0.0069;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57914164 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.6687;AVGPOST=0.9973;RSQ=0.9953;ERATE=0.0006;THETA=0.0011;AC=1461;AN=2184 GT:DS:GL:BD 0.66895604 1 1 57914181 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.7342;AVGPOST=0.9979;RSQ=0.9957;ERATE=0.0005;THETA=0.0002;AC=1604;AN=2184 GT:DS:GL:BD 0.73443222 1 1 57914297 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7382;AVGPOST=0.9982;RSQ=0.9969;ERATE=0.0003;THETA=0.0002;AC=1612;AN=2184 GT:DS:GL:BD 0.73809522 1 1 57914319 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9998;RSQ=0.9842;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 57914548 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5556;AVGPOST=0.9967;RSQ=0.9950;ERATE=0.0007;THETA=0.0002;AC=1212;AN=2184 GT:DS:GL:BD 0.55494505 1 1 57914562 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0098;AVGPOST=0.9987;RSQ=0.9506;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 57914609 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57914689 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57914716 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7324;AVGPOST=0.9990;RSQ=0.9980;ERATE=0.0005;THETA=0.0002;AC=1600;AN=2184 GT:DS:GL:BD 0.73260075 1 1 57914825 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7089;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57914873 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57914874 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5551;AVGPOST=0.9976;RSQ=0.9964;ERATE=0.0005;THETA=0.0002;AC=1212;AN=2184 GT:DS:GL:BD 0.55494505 1 1 57914885 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0253;AVGPOST=0.9986;RSQ=0.9749;ERATE=0.0003;THETA=0.0006;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 57914940 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57915075 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.433;LDAF=0.0017;AVGPOST=0.9977;RSQ=0.4441;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57915088 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.5516;AVGPOST=0.9966;RSQ=0.9947;ERATE=0.0008;THETA=0.0003;AC=1204;AN=2184 GT:DS:GL:BD 0.55128205 1 1 57915131 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.6793;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57915232 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2176;AVGPOST=0.9969;RSQ=0.9939;ERATE=0.0004;THETA=0.0003;AC=474;AN=2184 GT:DS:GL:BD 0.21703297 0 1 57915436 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6941;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57915494 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0059;AVGPOST=0.9991;RSQ=0.9526;ERATE=0.0004;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 57915503 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.752;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7122;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57915599 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0093;AVGPOST=0.9995;RSQ=0.9721;ERATE=0.0004;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 57915622 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0661;AVGPOST=0.9982;RSQ=0.9893;ERATE=0.0005;THETA=0.0003;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 57915749 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0656;AVGPOST=0.9992;RSQ=0.9946;ERATE=0.0005;THETA=0.0005;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 57915793 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7315;AVGPOST=0.9982;RSQ=0.9967;ERATE=0.0005;THETA=0.0002;AC=1599;AN=2184 GT:DS:GL:BD 0.73214287 1 1 57915796 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7582;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57915812 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.773;LDAF=0.0023;AVGPOST=0.9972;RSQ=0.6072;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57915853 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7559;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57915925 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.674;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5090;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57915935 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57915939 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0134;AVGPOST=0.9997;RSQ=0.9885;ERATE=0.0003;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 57915952 . AAAG A 66 PASS INDEL;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7075;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57916015 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.7096;ERATE=0.0008;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57916085 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.1011;AVGPOST=0.9943;RSQ=0.9777;ERATE=0.0011;THETA=0.0002;AC=217;AN=2184 GT:DS:GL:BD 0.09935898 0 1 57916179 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0022;AVGPOST=0.9989;RSQ=0.7913;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57916226 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0053;AVGPOST=0.9991;RSQ=0.9360;ERATE=0.0003;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 57916319 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0030;AVGPOST=0.9976;RSQ=0.6929;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57916320 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9888;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 57916322 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.706;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57916393 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8254;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57916470 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9994;RSQ=0.9266;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57916498 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9997;RSQ=0.9603;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 57916599 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0427;AVGPOST=0.9993;RSQ=0.9930;ERATE=0.0003;THETA=0.0002;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 57916697 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4995;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57916761 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0944;AVGPOST=0.9983;RSQ=0.9926;ERATE=0.0003;THETA=0.0007;AC=207;AN=2184 GT:DS:GL:BD 0.09478022 0 1 57916777 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0663;AVGPOST=0.9998;RSQ=0.9984;ERATE=0.0003;THETA=0.0003;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 57916797 . AC A 2525 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0173;AVGPOST=0.9990;RSQ=0.9728;ERATE=0.0004;THETA=0.0001;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 57916900 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.954;LDAF=0.0302;AVGPOST=0.9973;RSQ=0.9638;ERATE=0.0004;THETA=0.0003;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 57917043 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0133;AVGPOST=0.9997;RSQ=0.9904;ERATE=0.0003;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 57917095 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57917102 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9995;RSQ=0.9465;ERATE=0.0004;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57917151 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0946;AVGPOST=0.9990;RSQ=0.9951;ERATE=0.0004;THETA=0.0004;AC=207;AN=2184 GT:DS:GL:BD 0.09478022 0 1 57917204 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0030;AVGPOST=0.9981;RSQ=0.7635;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57917269 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5914;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57917398 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7353;AVGPOST=0.9965;RSQ=0.9937;ERATE=0.0008;THETA=0.0003;AC=1605;AN=2184 GT:DS:GL:BD 0.73489010 1 1 57917452 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6817;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57917453 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.9118;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57917478 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2101;AVGPOST=0.9971;RSQ=0.9939;ERATE=0.0005;THETA=0.0004;AC=458;AN=2184 GT:DS:GL:BD 0.20970696 0 1 57917512 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0807;AVGPOST=0.9986;RSQ=0.9930;ERATE=0.0003;THETA=0.0005;AC=174;AN=2184 GT:DS:GL:BD 0.07967033 0 1 57917602 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5625;AVGPOST=0.9979;RSQ=0.9969;ERATE=0.0004;THETA=0.0002;AC=1228;AN=2184 GT:DS:GL:BD 0.56227106 1 1 57917666 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0133;AVGPOST=0.9997;RSQ=0.9904;ERATE=0.0003;THETA=0.0011;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 57917672 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9311;ERATE=0.0004;THETA=0.0001;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57917699 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6467;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57917701 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0101;AVGPOST=0.9987;RSQ=0.9478;ERATE=0.0005;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 57917703 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0032;AVGPOST=0.9953;RSQ=0.4771;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57917831 . A AC 9731 PASS INDEL;BAVGPOST=0.839;BRSQ=0.676;LDAF=0.6479;AVGPOST=0.7600;RSQ=0.5809;ERATE=0.0333;THETA=0.0003;AC=1435;AN=2184 GT:DS:GL:BD 0.65705127 1 1 57917871 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.977;LDAF=0.5577;AVGPOST=0.9665;RSQ=0.9519;ERATE=0.0063;THETA=0.0002;AC=1227;AN=2184 GT:DS:GL:BD 0.56181318 1 1 57917922 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9654;ERATE=0.0004;THETA=0.0028;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57918204 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9292;ERATE=0.0005;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57918286 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0007;AVGPOST=0.9991;RSQ=0.5817;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57918355 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0388;AVGPOST=0.9996;RSQ=0.9960;ERATE=0.0003;THETA=0.0004;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 57918471 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0284;AVGPOST=0.9999;RSQ=0.9979;ERATE=0.0003;THETA=0.0005;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 57918473 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0036;AVGPOST=0.9996;RSQ=0.9548;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57918536 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.835;LDAF=0.0091;AVGPOST=0.9970;RSQ=0.8759;ERATE=0.0004;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 57918541 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.816;LDAF=0.0064;AVGPOST=0.9962;RSQ=0.7564;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 57918653 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0426;AVGPOST=0.9982;RSQ=0.9845;ERATE=0.0004;THETA=0.0004;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 57918833 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5335;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57918836 . CTG C 3917 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0288;AVGPOST=0.9988;RSQ=0.9822;ERATE=0.0003;THETA=0.0005;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 57918938 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0202;AVGPOST=0.9975;RSQ=0.9473;ERATE=0.0010;THETA=0.0002;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 57918939 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7019;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57918951 . C CG 4 PASS INDEL;BAVGPOST=0.999;BRSQ=0.765;LDAF=0.0020;AVGPOST=0.9976;RSQ=0.5322;ERATE=0.0007;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57919017 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0028;AVGPOST=0.9984;RSQ=0.7890;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57919102 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6237;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57919110 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.822;LDAF=0.0053;AVGPOST=0.9975;RSQ=0.8242;ERATE=0.0005;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 57919156 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0062;AVGPOST=0.9984;RSQ=0.8954;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 57919383 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57919401 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5495;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57919505 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0065;AVGPOST=0.9983;RSQ=0.8860;ERATE=0.0005;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 57919517 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0047;AVGPOST=0.9970;RSQ=0.7540;ERATE=0.0005;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 57919519 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8726;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57919546 rs60048639 G GA 4192 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0361;AVGPOST=0.9961;RSQ=0.9596;ERATE=0.0004;THETA=0.0002;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 57919623 . T TG 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6745;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57919776 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0343;AVGPOST=0.9997;RSQ=0.9961;ERATE=0.0003;THETA=0.0005;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 57919884 . AG A 4749 PASS INDEL;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0286;AVGPOST=0.9985;RSQ=0.9810;ERATE=0.0004;THETA=0.0004;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 57919888 . GA G 67 PASS INDEL;BAVGPOST=0.988;BRSQ=0.660;LDAF=0.0115;AVGPOST=0.9870;RSQ=0.6187;ERATE=0.0009;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 57919889 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0290;AVGPOST=0.9986;RSQ=0.9840;ERATE=0.0003;THETA=0.0005;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 57920032 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0075;AVGPOST=0.9986;RSQ=0.9290;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 57920033 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6745;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57920290 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.700;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5357;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57920306 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1755;AVGPOST=0.9994;RSQ=0.9980;ERATE=0.0003;THETA=0.0003;AC=383;AN=2184 GT:DS:GL:BD 0.17536630 0 1 57920336 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1744;AVGPOST=0.9960;RSQ=0.9885;ERATE=0.0016;THETA=0.0005;AC=378;AN=2184 GT:DS:GL:BD 0.17307693 0 1 57920416 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0734;AVGPOST=0.9980;RSQ=0.9887;ERATE=0.0004;THETA=0.0003;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 57920432 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57920576 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0650;AVGPOST=0.9998;RSQ=0.9985;ERATE=0.0003;THETA=0.0003;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 57920824 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57920864 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5871;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57920872 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.7982;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57920915 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7891;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57921173 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0033;AVGPOST=0.9962;RSQ=0.6248;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57921472 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57921505 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1001;AVGPOST=0.9998;RSQ=0.9991;ERATE=0.0003;THETA=0.0004;AC=219;AN=2184 GT:DS:GL:BD 0.10027473 0 1 57921562 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9996;RSQ=0.9712;ERATE=0.0003;THETA=0.0001;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 57921767 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0059;AVGPOST=0.9991;RSQ=0.9358;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 57921801 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.840;LDAF=0.0070;AVGPOST=0.9973;RSQ=0.8616;ERATE=0.0008;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 57921822 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57921853 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57921904 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0659;AVGPOST=0.9998;RSQ=0.9987;ERATE=0.0003;THETA=0.0004;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 57922158 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0019;AVGPOST=0.9969;RSQ=0.3584;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57922198 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.633;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4728;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57922222 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0674;AVGPOST=0.9974;RSQ=0.9851;ERATE=0.0005;THETA=0.0005;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 57922236 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0029;AVGPOST=0.9987;RSQ=0.8255;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 57922292 . G GA 238 PASS INDEL;BAVGPOST=0.998;BRSQ=0.859;LDAF=0.0066;AVGPOST=0.9952;RSQ=0.6929;ERATE=0.0011;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 57922377 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0283;AVGPOST=0.9999;RSQ=0.9986;ERATE=0.0003;THETA=0.0003;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 57922450 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6321;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57922506 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.642;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8244;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57922636 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5220;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57922644 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0233;AVGPOST=0.9989;RSQ=0.9835;ERATE=0.0004;THETA=0.0003;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 57922772 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0154;AVGPOST=0.9993;RSQ=0.9806;ERATE=0.0003;THETA=0.0002;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 57922821 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57922844 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.848;LDAF=0.0144;AVGPOST=0.9947;RSQ=0.8572;ERATE=0.0004;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 57922915 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4147;AVGPOST=0.9988;RSQ=0.9980;ERATE=0.0004;THETA=0.0003;AC=906;AN=2184 GT:DS:GL:BD 0.41483516 0 1 57922922 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7687;ERATE=0.0007;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57922937 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.7971;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57923194 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9767;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57923343 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0017;AVGPOST=0.9979;RSQ=0.5159;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57923439 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4130;AVGPOST=0.9980;RSQ=0.9967;ERATE=0.0006;THETA=0.0001;AC=902;AN=2184 GT:DS:GL:BD 0.41300365 0 1 57923487 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57923533 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0659;AVGPOST=0.9995;RSQ=0.9965;ERATE=0.0003;THETA=0.0003;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 57923589 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.863;LDAF=0.0038;AVGPOST=0.9976;RSQ=0.7754;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57923677 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7018;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57923730 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2045;AVGPOST=0.9974;RSQ=0.9937;ERATE=0.0004;THETA=0.0003;AC=447;AN=2184 GT:DS:GL:BD 0.20467032 0 1 57923786 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0055;AVGPOST=0.9998;RSQ=0.9801;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 57923850 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.826;LDAF=0.0200;AVGPOST=0.9904;RSQ=0.8025;ERATE=0.0004;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 57923901 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57923924 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0444;AVGPOST=0.9979;RSQ=0.9814;ERATE=0.0005;THETA=0.0003;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 57924176 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57924227 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9981;RSQ=0.8176;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57924261 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.792;LDAF=0.0030;AVGPOST=0.9984;RSQ=0.7578;ERATE=0.0006;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57924410 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.3903;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57924426 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.757;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4816;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57924484 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0148;AVGPOST=0.9986;RSQ=0.9593;ERATE=0.0004;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 57924607 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.693;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.6694;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57924610 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.691;LDAF=0.0022;AVGPOST=0.9968;RSQ=0.4660;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57924656 . CAA C 60 PASS INDEL;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0029;AVGPOST=0.9948;RSQ=0.2643;ERATE=0.0008;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57924695 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0030;AVGPOST=0.9970;RSQ=0.6806;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57924729 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.568;LDAF=0.0032;AVGPOST=0.9977;RSQ=0.6966;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57924833 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6288;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57924880 . AATTTT A 236 PASS INDEL;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8665;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 57924898 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4680;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57925015 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57925064 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0060;AVGPOST=0.9995;RSQ=0.9618;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 57925147 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7259;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57925258 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0031;AVGPOST=0.9995;RSQ=0.9364;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 57925299 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0345;AVGPOST=0.9995;RSQ=0.9944;ERATE=0.0003;THETA=0.0003;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 57925316 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0076;AVGPOST=0.9995;RSQ=0.9689;ERATE=0.0004;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 57925368 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0181;AVGPOST=0.9979;RSQ=0.9570;ERATE=0.0003;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 57925385 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0030;AVGPOST=0.9993;RSQ=0.9009;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57925386 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0344;AVGPOST=0.9997;RSQ=0.9961;ERATE=0.0003;THETA=0.0006;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 57925497 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0021;AVGPOST=0.9980;RSQ=0.6645;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57925507 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57925569 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9880;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 57925660 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57925687 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.4124;AVGPOST=0.9973;RSQ=0.9958;ERATE=0.0004;THETA=0.0019;AC=900;AN=2184 GT:DS:GL:BD 0.41208792 0 1 57925692 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0658;AVGPOST=0.9998;RSQ=0.9984;ERATE=0.0003;THETA=0.0004;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 57925704 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.979;LDAF=0.0339;AVGPOST=0.9984;RSQ=0.9831;ERATE=0.0003;THETA=0.0006;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 57925867 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0029;AVGPOST=0.9988;RSQ=0.8288;ERATE=0.0010;THETA=0.0028;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57925915 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.876;LDAF=0.0101;AVGPOST=0.9988;RSQ=0.9552;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 57926113 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0658;AVGPOST=0.9999;RSQ=0.9991;ERATE=0.0003;THETA=0.0003;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 57926137 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0658;AVGPOST=0.9999;RSQ=0.9994;ERATE=0.0003;THETA=0.0003;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 57926213 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57926309 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57926385 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6180;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57926419 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5844;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57926543 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57926567 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.754;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.6500;ERATE=0.0003;THETA=0.0023;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57926620 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0663;AVGPOST=0.9999;RSQ=0.9990;ERATE=0.0003;THETA=0.0005;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 57926769 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6633;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57926851 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57926931 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57926936 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2085;AVGPOST=0.9973;RSQ=0.9943;ERATE=0.0005;THETA=0.0008;AC=455;AN=2184 GT:DS:GL:BD 0.20833333 0 1 57927033 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9605;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57927056 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9451;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57927124 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7618;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57927197 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0089;AVGPOST=0.9967;RSQ=0.8721;ERATE=0.0004;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 57927239 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0664;AVGPOST=0.9998;RSQ=0.9987;ERATE=0.0003;THETA=0.0015;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 57927294 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8423;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57927311 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9799;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 57927312 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57927364 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6343;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57927394 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0656;AVGPOST=0.9981;RSQ=0.9898;ERATE=0.0004;THETA=0.0004;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 57927422 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1372;AVGPOST=0.9974;RSQ=0.9912;ERATE=0.0004;THETA=0.0045;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 57927438 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5655;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57927615 rs80179978 C CT 530 PASS INDEL;BAVGPOST=0.489;BRSQ=0.124;LDAF=0.4368;AVGPOST=0.6505;RSQ=0.4001;ERATE=0.0212;THETA=0.0005;AC=852;AN=2184 GT:DS:GL:BD 0.39010990 0 1 57927910 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0669;AVGPOST=0.9975;RSQ=0.9861;ERATE=0.0004;THETA=0.0002;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 57928061 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5335;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57928092 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6236;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57928172 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0662;AVGPOST=0.9997;RSQ=0.9983;ERATE=0.0003;THETA=0.0005;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 57928285 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0096;AVGPOST=0.9995;RSQ=0.9774;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 57928305 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6111;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57928306 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9696;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 57928326 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7577;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57928378 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57928401 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2188;AVGPOST=0.9957;RSQ=0.9914;ERATE=0.0014;THETA=0.0004;AC=476;AN=2184 GT:DS:GL:BD 0.21794872 0 1 57928474 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6180;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57928507 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0082;AVGPOST=0.9990;RSQ=0.9489;ERATE=0.0004;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 57928720 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9739;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 57928863 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0125;AVGPOST=0.9995;RSQ=0.9836;ERATE=0.0003;THETA=0.0012;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 57928873 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9995;RSQ=0.9465;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57928922 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57929282 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0033;AVGPOST=0.9956;RSQ=0.5040;ERATE=0.0009;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57929289 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.4287;AVGPOST=0.9983;RSQ=0.9972;ERATE=0.0004;THETA=0.0003;AC=935;AN=2184 GT:DS:GL:BD 0.42811355 0 1 57929352 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7298;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57929443 . A ATTCC 714 PASS INDEL;BAVGPOST=0.998;BRSQ=0.891;LDAF=0.0144;AVGPOST=0.9964;RSQ=0.9004;ERATE=0.0005;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 57929712 . GA G 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5692;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57929775 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57929884 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.8054;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57930070 . T TC 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7640;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57930114 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0033;AVGPOST=0.9986;RSQ=0.8287;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 57930136 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4355;AVGPOST=0.9981;RSQ=0.9972;ERATE=0.0004;THETA=0.0007;AC=950;AN=2184 GT:DS:GL:BD 0.43498167 0 1 57930317 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0045;AVGPOST=0.9979;RSQ=0.7962;ERATE=0.0014;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57930393 . TATC T 190 PASS INDEL;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0033;AVGPOST=0.9979;RSQ=0.7434;ERATE=0.0006;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57930424 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6920;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57930438 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0095;AVGPOST=0.9996;RSQ=0.9811;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 57930526 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5345;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57930540 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0142;AVGPOST=0.9982;RSQ=0.9539;ERATE=0.0003;THETA=0.0002;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 57930608 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0027;AVGPOST=0.9987;RSQ=0.7904;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57930625 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8804;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57930873 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6334;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57930902 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9618;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57931024 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0041;AVGPOST=0.9995;RSQ=0.9565;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 57931167 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0098;AVGPOST=0.9996;RSQ=0.9843;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 57931233 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57931333 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0675;AVGPOST=0.9991;RSQ=0.9941;ERATE=0.0004;THETA=0.0003;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 57931429 . A AGAT 26 PASS INDEL;BAVGPOST=1.000;BRSQ=0.729;LDAF=0.0037;AVGPOST=0.9978;RSQ=0.7625;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57931449 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8914;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57931696 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57931834 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.689;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6616;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57932060 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0148;AVGPOST=0.9982;RSQ=0.9519;ERATE=0.0003;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 57932072 . G GA 5186 PASS INDEL;BAVGPOST=0.986;BRSQ=0.919;LDAF=0.0882;AVGPOST=0.9727;RSQ=0.8695;ERATE=0.0082;THETA=0.0003;AC=175;AN=2184 GT:DS:GL:BD 0.08012821 0 1 57932134 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0045;AVGPOST=0.9993;RSQ=0.9306;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 57932182 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6552;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57932295 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0687;AVGPOST=0.9998;RSQ=0.9986;ERATE=0.0003;THETA=0.0003;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 57932461 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5157;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57932578 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7459;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57932606 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9254;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 57932622 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57932699 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0072;AVGPOST=0.9991;RSQ=0.9609;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 57932708 . TCA T 508 PASS INDEL;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57932807 . CT C 159 PASS INDEL;BAVGPOST=1.000;BRSQ=0.751;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5650;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57932931 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0719;AVGPOST=0.9997;RSQ=0.9982;ERATE=0.0003;THETA=0.0003;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 57933076 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4352;AVGPOST=0.9976;RSQ=0.9966;ERATE=0.0005;THETA=0.0005;AC=949;AN=2184 GT:DS:GL:BD 0.43452382 0 1 57933195 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.672;LDAF=0.0029;AVGPOST=0.9992;RSQ=0.8887;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57933279 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0115;AVGPOST=0.9996;RSQ=0.9848;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 57933337 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0673;AVGPOST=0.9997;RSQ=0.9981;ERATE=0.0003;THETA=0.0003;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 57933396 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57933477 . T TA 46 PASS INDEL;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5407;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57933534 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0270;AVGPOST=0.9990;RSQ=0.9894;ERATE=0.0004;THETA=0.0003;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 57933630 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0672;AVGPOST=0.9999;RSQ=0.9994;ERATE=0.0003;THETA=0.0002;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 57933721 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9670;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 57933727 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0674;AVGPOST=0.9989;RSQ=0.9941;ERATE=0.0003;THETA=0.0003;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 57933752 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.7610;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57933792 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0059;AVGPOST=0.9995;RSQ=0.9572;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 57933955 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2918;AVGPOST=0.9992;RSQ=0.9985;ERATE=0.0004;THETA=0.0004;AC=635;AN=2184 GT:DS:GL:BD 0.29075092 0 1 57934034 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0984;AVGPOST=0.9986;RSQ=0.9934;ERATE=0.0006;THETA=0.0004;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 57934102 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57934206 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.0716;AVGPOST=0.9995;RSQ=0.9979;ERATE=0.0003;THETA=0.0002;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 57934229 . GT G 38 PASS INDEL;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0033;AVGPOST=0.9980;RSQ=0.7567;ERATE=0.0005;THETA=0.0001;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57934299 . CAT C 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4250;ERATE=0.0005;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57934459 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0007;AVGPOST=0.9991;RSQ=0.4654;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57934517 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6853;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57934607 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0125;AVGPOST=0.9998;RSQ=0.9924;ERATE=0.0003;THETA=0.0002;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 57935122 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4362;AVGPOST=0.9983;RSQ=0.9974;ERATE=0.0003;THETA=0.0003;AC=950;AN=2184 GT:DS:GL:BD 0.43498167 0 1 57935239 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57935599 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0072;AVGPOST=0.9992;RSQ=0.9512;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 57935605 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.744;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4512;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57935631 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.680;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5001;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57935826 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57935976 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57936032 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.693;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5854;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57936049 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0947;AVGPOST=0.9976;RSQ=0.9892;ERATE=0.0004;THETA=0.0004;AC=206;AN=2184 GT:DS:GL:BD 0.09432235 0 1 57936102 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8771;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57936162 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0017;AVGPOST=0.9978;RSQ=0.4949;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57936193 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.4349;AVGPOST=0.9976;RSQ=0.9961;ERATE=0.0006;THETA=0.0004;AC=949;AN=2184 GT:DS:GL:BD 0.43452382 0 1 57936257 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0061;AVGPOST=0.9995;RSQ=0.9652;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 57936499 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1380;AVGPOST=0.9994;RSQ=0.9980;ERATE=0.0003;THETA=0.0004;AC=302;AN=2184 GT:DS:GL:BD 0.13827839 0 1 57936626 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6787;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57936705 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7798;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57936712 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0128;AVGPOST=0.9992;RSQ=0.9728;ERATE=0.0003;THETA=0.0007;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 57936778 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0036;AVGPOST=0.9999;RSQ=0.9826;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57936796 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9346;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57936816 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57936846 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0664;AVGPOST=0.9994;RSQ=0.9959;ERATE=0.0004;THETA=0.0002;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 57936857 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0721;AVGPOST=0.9993;RSQ=0.9968;ERATE=0.0003;THETA=0.0003;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 57936869 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6952;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57937038 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57937087 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0035;AVGPOST=0.9980;RSQ=0.7840;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57937133 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.839;LDAF=0.0062;AVGPOST=0.9975;RSQ=0.8348;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 57937332 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0018;AVGPOST=0.9997;RSQ=0.9292;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57937439 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0096;AVGPOST=0.9998;RSQ=0.9908;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 57937446 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.971;LDAF=0.3987;AVGPOST=0.9900;RSQ=0.9850;ERATE=0.0009;THETA=0.0004;AC=873;AN=2184 GT:DS:GL:BD 0.39972529 0 1 57937562 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2261;AVGPOST=0.9992;RSQ=0.9981;ERATE=0.0004;THETA=0.0003;AC=493;AN=2184 GT:DS:GL:BD 0.22573259 0 1 57937598 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5176;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57937668 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57937757 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9882;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57937770 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0496;AVGPOST=0.9993;RSQ=0.9940;ERATE=0.0004;THETA=0.0003;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 57937780 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0887;AVGPOST=0.9998;RSQ=0.9991;ERATE=0.0003;THETA=0.0004;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 57937797 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1258;AVGPOST=0.9995;RSQ=0.9982;ERATE=0.0003;THETA=0.0005;AC=275;AN=2184 GT:DS:GL:BD 0.12591575 0 1 57937810 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1223;AVGPOST=0.9994;RSQ=0.9977;ERATE=0.0003;THETA=0.0003;AC=267;AN=2184 GT:DS:GL:BD 0.12225275 0 1 57937840 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.644;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7079;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57937919 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57938138 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.676;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57938171 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7368;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57938282 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0425;AVGPOST=0.9978;RSQ=0.9778;ERATE=0.0005;THETA=0.0003;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 57938295 . CG C 3917 PASS INDEL;BAVGPOST=0.979;BRSQ=0.799;LDAF=0.0604;AVGPOST=0.9544;RSQ=0.7082;ERATE=0.0095;THETA=0.0004;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 57938296 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.957;LDAF=0.3483;AVGPOST=0.9824;RSQ=0.9736;ERATE=0.0022;THETA=0.0004;AC=761;AN=2184 GT:DS:GL:BD 0.34844321 0 1 57938389 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.749;LDAF=0.0053;AVGPOST=0.9968;RSQ=0.7461;ERATE=0.0006;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57938407 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4889;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57938526 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7841;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57938537 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57938578 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2242;AVGPOST=0.9991;RSQ=0.9984;ERATE=0.0003;THETA=0.0002;AC=489;AN=2184 GT:DS:GL:BD 0.22390109 0 1 57938579 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57938602 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0050;AVGPOST=0.9990;RSQ=0.9087;ERATE=0.0013;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 57938674 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0319;AVGPOST=0.9997;RSQ=0.9964;ERATE=0.0003;THETA=0.0003;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 57938752 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1437;AVGPOST=0.9990;RSQ=0.9971;ERATE=0.0003;THETA=0.0004;AC=314;AN=2184 GT:DS:GL:BD 0.14377290 0 1 57938792 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.697;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6813;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57938831 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8924;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57939016 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.858;LDAF=0.0054;AVGPOST=0.9983;RSQ=0.8696;ERATE=0.0005;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 57939062 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57939102 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57939116 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0072;AVGPOST=0.9993;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 57939127 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57939238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7921;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57939306 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0494;AVGPOST=0.9998;RSQ=0.9984;ERATE=0.0003;THETA=0.0004;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 57939359 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0929;AVGPOST=0.9959;RSQ=0.9822;ERATE=0.0003;THETA=0.0005;AC=201;AN=2184 GT:DS:GL:BD 0.09203297 0 1 57939401 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8237;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57939542 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.693;LDAF=0.0017;AVGPOST=0.9978;RSQ=0.4762;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57939660 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0495;AVGPOST=0.9997;RSQ=0.9975;ERATE=0.0003;THETA=0.0004;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 57939857 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0494;AVGPOST=0.9998;RSQ=0.9984;ERATE=0.0003;THETA=0.0005;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 57940029 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57940040 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0495;AVGPOST=0.9998;RSQ=0.9984;ERATE=0.0003;THETA=0.0004;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 57940049 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0416;AVGPOST=0.9989;RSQ=0.9889;ERATE=0.0004;THETA=0.0005;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 57940060 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7847;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57940268 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.5593;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57940304 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.8148;AVGPOST=0.9992;RSQ=0.9981;ERATE=0.0005;THETA=0.0005;AC=1779;AN=2184 GT:DS:GL:BD 0.81456041 1 1 57940550 . TG T 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4956;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57940560 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.9588;AVGPOST=0.9989;RSQ=0.9899;ERATE=0.0003;THETA=0.0003;AC=2095;AN=2184 GT:DS:GL:BD 0.95924908 1 1 57940654 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57940740 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5607;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57940741 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.684;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.4894;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57940853 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.986;LDAF=0.1905;AVGPOST=0.9933;RSQ=0.9852;ERATE=0.0005;THETA=0.0003;AC=415;AN=2184 GT:DS:GL:BD 0.19001831 0 1 57940912 . G GCAC 193 PASS INDEL;BAVGPOST=0.998;BRSQ=0.715;LDAF=0.0041;AVGPOST=0.9971;RSQ=0.7046;ERATE=0.0006;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57940951 . AC A 344 PASS INDEL;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8894;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57940981 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57940990 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8641;AVGPOST=0.9994;RSQ=0.9984;ERATE=0.0004;THETA=0.0004;AC=1887;AN=2184 GT:DS:GL:BD 0.86401099 1 1 57941156 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57941164 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0189;AVGPOST=0.9998;RSQ=0.9945;ERATE=0.0003;THETA=0.0006;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 57941236 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0262;AVGPOST=0.9996;RSQ=0.9944;ERATE=0.0003;THETA=0.0005;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 57941261 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6174;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57941311 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.516;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4652;ERATE=0.0007;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57941365 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5998;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57941759 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.659;LDAF=0.0028;AVGPOST=0.9954;RSQ=0.4055;ERATE=0.0005;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57941906 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0130;AVGPOST=0.9969;RSQ=0.9061;ERATE=0.0004;THETA=0.0032;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 57941931 . A AC 1090 PASS INDEL;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0342;AVGPOST=0.9964;RSQ=0.9601;ERATE=0.0004;THETA=0.0006;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 57941932 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0334;AVGPOST=0.9979;RSQ=0.9773;ERATE=0.0003;THETA=0.0004;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 57941935 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4171;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57941936 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.1686;AVGPOST=0.9887;RSQ=0.9744;ERATE=0.0026;THETA=0.0003;AC=365;AN=2184 GT:DS:GL:BD 0.16712454 0 1 57941942 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0050;AVGPOST=0.9985;RSQ=0.8895;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 57942010 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.673;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6135;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57942015 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0177;AVGPOST=0.9982;RSQ=0.9563;ERATE=0.0006;THETA=0.0012;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 57942137 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.2256;AVGPOST=0.9892;RSQ=0.9784;ERATE=0.0017;THETA=0.0004;AC=489;AN=2184 GT:DS:GL:BD 0.22390109 0 1 57942358 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57942483 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9437;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57942519 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.616;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6473;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57942550 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.7059;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57942635 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.901;LDAF=0.0042;AVGPOST=0.9994;RSQ=0.9380;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 57942636 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.727;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57942660 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9990;RSQ=0.8874;ERATE=0.0005;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 57942722 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.724;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6178;ERATE=0.0003;THETA=0.0050;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57942772 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0123;AVGPOST=0.9977;RSQ=0.9251;ERATE=0.0003;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 57942786 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0110;AVGPOST=0.9999;RSQ=0.9960;ERATE=0.0003;THETA=0.0002;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 57942800 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6830;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57942814 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3641;AVGPOST=0.9960;RSQ=0.9940;ERATE=0.0004;THETA=0.0005;AC=793;AN=2184 GT:DS:GL:BD 0.36309522 0 1 57942859 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7736;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57942871 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57943035 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0298;AVGPOST=0.9997;RSQ=0.9959;ERATE=0.0003;THETA=0.0005;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 57943097 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0031;AVGPOST=0.9994;RSQ=0.9039;ERATE=0.0004;THETA=0.0019;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57943163 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.774;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7868;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57943167 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6430;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57943180 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0036;AVGPOST=0.9990;RSQ=0.8731;ERATE=0.0005;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 57943218 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57943305 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6228;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57943359 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7682;ERATE=0.0005;THETA=0.0035;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57943376 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5892;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57943399 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57943581 . A AT 1078 PASS INDEL;BAVGPOST=0.997;BRSQ=0.923;LDAF=0.0184;AVGPOST=0.9922;RSQ=0.8476;ERATE=0.0019;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 57943630 rs58208381 T TTTG 5343 PASS INDEL;BAVGPOST=0.958;BRSQ=0.747;LDAF=0.0919;AVGPOST=0.9748;RSQ=0.8908;ERATE=0.0009;THETA=0.0009;AC=207;AN=2184 GT:DS:GL:BD 0.09478022 0 1 57943721 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.756;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.4775;ERATE=0.0006;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57943747 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0123;AVGPOST=0.9990;RSQ=0.9673;ERATE=0.0005;THETA=0.0008;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 57943786 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0203;AVGPOST=0.9996;RSQ=0.9904;ERATE=0.0003;THETA=0.0004;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 57943855 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6978;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57943988 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.988;LDAF=0.1680;AVGPOST=0.9984;RSQ=0.9954;ERATE=0.0004;THETA=0.0011;AC=366;AN=2184 GT:DS:GL:BD 0.16758242 0 1 57944101 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5949;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57944111 rs11407860 A AT 839 PASS INDEL;BAVGPOST=0.995;BRSQ=0.851;LDAF=0.0223;AVGPOST=0.9888;RSQ=0.8118;ERATE=0.0012;THETA=0.0005;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 57944258 rs57402654 C CT 2358 PASS INDEL;BAVGPOST=0.551;BRSQ=0.223;LDAF=0.5472;AVGPOST=0.6347;RSQ=0.3523;ERATE=0.0415;THETA=0.0006;AC=1186;AN=2184 GT:DS:GL:BD 0.54304028 1 1 57944327 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.954;LDAF=0.2188;AVGPOST=0.9859;RSQ=0.9711;ERATE=0.0028;THETA=0.0012;AC=480;AN=2184 GT:DS:GL:BD 0.21978022 0 1 57944445 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0085;AVGPOST=0.9952;RSQ=0.7547;ERATE=0.0010;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 57944564 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0094;AVGPOST=0.9957;RSQ=0.8297;ERATE=0.0006;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 57944589 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0005;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57944711 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0063;AVGPOST=0.9956;RSQ=0.7623;ERATE=0.0012;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 57944771 . ACTTTT A 55 PASS INDEL;BAVGPOST=1.000;BRSQ=0.664;LDAF=0.0028;AVGPOST=0.9958;RSQ=0.4636;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57944802 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2236;AVGPOST=0.9947;RSQ=0.9888;ERATE=0.0010;THETA=0.0003;AC=486;AN=2184 GT:DS:GL:BD 0.22252747 0 1 57945044 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5655;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57945546 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8757;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57945557 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.751;LDAF=0.0117;AVGPOST=0.9962;RSQ=0.8631;ERATE=0.0005;THETA=0.0008;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 57945695 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.378;LDAF=0.0043;AVGPOST=0.9957;RSQ=0.5936;ERATE=0.0007;THETA=0.0019;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 57945741 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.836;LDAF=0.0136;AVGPOST=0.9937;RSQ=0.8054;ERATE=0.0009;THETA=0.0007;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 57945889 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0037;AVGPOST=0.9982;RSQ=0.8395;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57945943 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2510;AVGPOST=0.9969;RSQ=0.9944;ERATE=0.0007;THETA=0.0004;AC=548;AN=2184 GT:DS:GL:BD 0.25091577 0 1 57945974 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0330;AVGPOST=0.9995;RSQ=0.9939;ERATE=0.0003;THETA=0.0003;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 57946027 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.837;LDAF=0.0069;AVGPOST=0.9973;RSQ=0.8703;ERATE=0.0004;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 57946150 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8879;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57946346 . AG A 183 PASS INDEL;BAVGPOST=1.000;BRSQ=0.718;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.4080;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57946426 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.693;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8313;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57946497 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5924;ERATE=0.0003;THETA=0.0043;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57946524 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57946560 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.681;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5340;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57946601 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5584;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57946720 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0374;AVGPOST=0.9990;RSQ=0.9892;ERATE=0.0003;THETA=0.0005;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 57946883 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7255;ERATE=0.0004;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57946890 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57947186 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0563;AVGPOST=0.9971;RSQ=0.9826;ERATE=0.0003;THETA=0.0004;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 57947195 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57947239 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0027;AVGPOST=0.9973;RSQ=0.5831;ERATE=0.0017;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57947282 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7302;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57947316 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0717;AVGPOST=0.9978;RSQ=0.9853;ERATE=0.0004;THETA=0.0013;AC=156;AN=2184 GT:DS:GL:BD 0.07142857 0 1 57947325 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.669;LDAF=0.0023;AVGPOST=0.9972;RSQ=0.5230;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57947350 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.745;LDAF=0.0024;AVGPOST=0.9974;RSQ=0.6094;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57947479 rs66616288 ACT A 11904 PASS INDEL;BAVGPOST=0.954;BRSQ=0.884;LDAF=0.1973;AVGPOST=0.9671;RSQ=0.9258;ERATE=0.0006;THETA=0.0002;AC=436;AN=2184 GT:DS:GL:BD 0.19963370 0 1 57947482 . CTG C 6224 PASS INDEL;BAVGPOST=0.902;BRSQ=0.759;LDAF=0.2549;AVGPOST=0.8641;RSQ=0.7475;ERATE=0.0072;THETA=0.0010;AC=481;AN=2184 GT:DS:GL:BD 0.22023809 0 1 57947606 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1831;AVGPOST=0.9960;RSQ=0.9905;ERATE=0.0004;THETA=0.0004;AC=399;AN=2184 GT:DS:GL:BD 0.18269230 0 1 57947665 . A ATTTGT 965 PASS INDEL;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0077;AVGPOST=0.9940;RSQ=0.7304;ERATE=0.0010;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 57947801 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.794;LDAF=0.0067;AVGPOST=0.9985;RSQ=0.9090;ERATE=0.0004;THETA=0.0025;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 57947855 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.765;LDAF=0.0079;AVGPOST=0.9948;RSQ=0.7320;ERATE=0.0006;THETA=0.0012;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 57947856 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0035;AVGPOST=0.9971;RSQ=0.6833;ERATE=0.0004;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57948127 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.975;LDAF=0.0332;AVGPOST=0.9988;RSQ=0.9848;ERATE=0.0004;THETA=0.0008;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 57948149 rs10561167 T TA 2139 PASS INDEL;BAVGPOST=0.507;BRSQ=0.116;LDAF=0.6582;AVGPOST=0.6430;RSQ=0.3110;ERATE=0.0288;THETA=0.0005;AC=1596;AN=2184 GT:DS:GL:BD 0.73076922 1 1 57948261 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5692;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57948465 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0103;AVGPOST=0.9995;RSQ=0.9807;ERATE=0.0003;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 57948532 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.856;LDAF=0.0174;AVGPOST=0.9963;RSQ=0.9090;ERATE=0.0003;THETA=0.0015;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 57948558 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.715;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5174;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57948616 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57948638 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9550;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57948711 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.917;LDAF=0.0049;AVGPOST=0.9979;RSQ=0.8537;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 57948733 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0041;AVGPOST=0.9966;RSQ=0.6721;ERATE=0.0009;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57948792 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9384;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57948903 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5276;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57948994 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.677;LDAF=0.0029;AVGPOST=0.9966;RSQ=0.5670;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57949145 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0330;AVGPOST=0.9993;RSQ=0.9906;ERATE=0.0003;THETA=0.0033;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 57949158 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5722;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57949168 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0029;AVGPOST=0.9980;RSQ=0.7848;ERATE=0.0004;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57949244 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57949270 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.844;LDAF=0.0060;AVGPOST=0.9969;RSQ=0.8001;ERATE=0.0007;THETA=0.0034;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 57949284 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9826;ERATE=0.0003;THETA=0.0022;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57949375 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6556;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57949411 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.869;LDAF=0.0251;AVGPOST=0.9875;RSQ=0.8132;ERATE=0.0003;THETA=0.0007;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 57949415 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.869;LDAF=0.0258;AVGPOST=0.9864;RSQ=0.8051;ERATE=0.0004;THETA=0.0006;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 57949429 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.861;LDAF=0.0345;AVGPOST=0.9789;RSQ=0.7628;ERATE=0.0015;THETA=0.0004;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 57949461 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0049;AVGPOST=0.9958;RSQ=0.6926;ERATE=0.0003;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 57949488 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.5773;ERATE=0.0003;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57949622 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7268;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57949674 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0336;AVGPOST=0.9983;RSQ=0.9817;ERATE=0.0005;THETA=0.0007;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 57949703 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57949758 . C CTA 91 PASS INDEL;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5726;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57949819 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6322;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57949896 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0199;AVGPOST=0.9995;RSQ=0.9923;ERATE=0.0003;THETA=0.0009;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 57949908 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57949964 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7303;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57950031 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5301;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57950042 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.853;LDAF=0.0069;AVGPOST=0.9977;RSQ=0.8767;ERATE=0.0005;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 57950281 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9202;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57950391 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0023;AVGPOST=0.9994;RSQ=0.8877;ERATE=0.0005;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57950405 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0403;AVGPOST=0.9993;RSQ=0.9928;ERATE=0.0003;THETA=0.0005;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 57950556 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0226;AVGPOST=0.9996;RSQ=0.9925;ERATE=0.0003;THETA=0.0011;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 57950577 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57950596 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57950601 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7231;ERATE=0.0003;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57950658 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0129;AVGPOST=0.9996;RSQ=0.9883;ERATE=0.0003;THETA=0.0006;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 57950661 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9478;ERATE=0.0003;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57950697 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57950851 rs60375797 G GCTTCCAGATCTAACTCCA 143561 PASS INDEL;BAVGPOST=0.981;BRSQ=0.964;LDAF=0.3329;AVGPOST=0.9685;RSQ=0.9517;ERATE=0.0056;THETA=0.0008;AC=726;AN=2184 GT:DS:GL:BD 0.33241758 0 1 57950948 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6431;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57950968 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0071;AVGPOST=0.9992;RSQ=0.9496;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 57951031 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57951149 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.972;LDAF=0.9781;AVGPOST=0.9998;RSQ=0.9954;ERATE=0.0003;THETA=0.0007;AC=2136;AN=2184 GT:DS:GL:BD 0.97802198 1 1 57951325 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8470;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57951395 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7510;ERATE=0.0003;THETA=0.0035;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57951442 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0156;AVGPOST=1.0000;RSQ=0.9986;ERATE=0.0003;THETA=0.0006;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 57951580 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0263;AVGPOST=0.9991;RSQ=0.9864;ERATE=0.0003;THETA=0.0009;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 57951588 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0562;AVGPOST=0.9999;RSQ=0.9988;ERATE=0.0003;THETA=0.0005;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 57951592 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0409;AVGPOST=0.9995;RSQ=0.9948;ERATE=0.0004;THETA=0.0007;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 57951812 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.925;LDAF=0.0053;AVGPOST=0.9984;RSQ=0.8809;ERATE=0.0004;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 57951890 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57951904 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.592;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7193;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57951957 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0155;AVGPOST=0.9989;RSQ=0.9677;ERATE=0.0005;THETA=0.0009;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 57952163 . TTGTC T 92 PASS INDEL;BAVGPOST=0.999;BRSQ=0.674;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.4332;ERATE=0.0006;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57952195 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57952368 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0200;AVGPOST=0.9992;RSQ=0.9817;ERATE=0.0004;THETA=0.0009;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 57952501 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0387;AVGPOST=0.9994;RSQ=0.9935;ERATE=0.0003;THETA=0.0009;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 57952528 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0050;AVGPOST=0.9982;RSQ=0.8657;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 57952566 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5107;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57952608 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0514;AVGPOST=0.9986;RSQ=0.9882;ERATE=0.0004;THETA=0.0005;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 57952641 . AG A 1561 PASS INDEL;BAVGPOST=0.975;BRSQ=0.805;LDAF=0.0771;AVGPOST=0.9402;RSQ=0.6774;ERATE=0.0209;THETA=0.0006;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 57952642 . G GA 2845 PASS INDEL;BAVGPOST=0.981;BRSQ=0.837;LDAF=0.0634;AVGPOST=0.9689;RSQ=0.8058;ERATE=0.0094;THETA=0.0004;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 57952655 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0386;AVGPOST=0.9997;RSQ=0.9965;ERATE=0.0003;THETA=0.0006;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 57952783 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57952824 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5723;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57952862 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9882;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57952908 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1297;AVGPOST=0.9972;RSQ=0.9904;ERATE=0.0004;THETA=0.0005;AC=282;AN=2184 GT:DS:GL:BD 0.12912089 0 1 57952917 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57952956 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57952977 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.7112;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57952984 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.871;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9460;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57953044 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0365;AVGPOST=0.9993;RSQ=0.9934;ERATE=0.0003;THETA=0.0003;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 57953073 . GC G 4 PASS INDEL;BAVGPOST=0.999;BRSQ=0.461;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4692;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57953110 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57953150 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0029;AVGPOST=0.9988;RSQ=0.8103;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57953487 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0130;AVGPOST=0.9992;RSQ=0.9742;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 57953530 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0068;AVGPOST=0.9991;RSQ=0.9476;ERATE=0.0004;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 57953564 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0127;AVGPOST=0.9993;RSQ=0.9764;ERATE=0.0003;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 57953587 . A AG 32 PASS INDEL;BAVGPOST=0.999;BRSQ=0.529;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7441;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57953596 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57953753 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0046;AVGPOST=0.9996;RSQ=0.9601;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 57953795 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0510;AVGPOST=0.9989;RSQ=0.9912;ERATE=0.0004;THETA=0.0003;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 57953800 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1915;AVGPOST=0.9974;RSQ=0.9946;ERATE=0.0006;THETA=0.0002;AC=418;AN=2184 GT:DS:GL:BD 0.19139194 0 1 57953806 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0502;AVGPOST=0.9986;RSQ=0.9890;ERATE=0.0005;THETA=0.0009;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 57953857 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0117;AVGPOST=0.9982;RSQ=0.9275;ERATE=0.0006;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 57953892 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0223;AVGPOST=0.9977;RSQ=0.9530;ERATE=0.0004;THETA=0.0005;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 57953996 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.939;LDAF=0.0394;AVGPOST=0.9962;RSQ=0.9586;ERATE=0.0005;THETA=0.0006;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 57954038 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.523;LDAF=0.0054;AVGPOST=0.9903;RSQ=0.3492;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57954052 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.945;LDAF=0.0516;AVGPOST=0.9946;RSQ=0.9549;ERATE=0.0006;THETA=0.0003;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 57954158 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.944;LDAF=0.1386;AVGPOST=0.9894;RSQ=0.9640;ERATE=0.0012;THETA=0.0015;AC=303;AN=2184 GT:DS:GL:BD 0.13873626 0 1 57954204 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0147;AVGPOST=0.9952;RSQ=0.8739;ERATE=0.0007;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 57954244 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.3967;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57954336 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0118;AVGPOST=0.9984;RSQ=0.9415;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 57954375 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.911;LDAF=0.1078;AVGPOST=0.9921;RSQ=0.9715;ERATE=0.0004;THETA=0.0008;AC=236;AN=2184 GT:DS:GL:BD 0.10805861 0 1 57954415 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.855;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5205;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57954416 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0444;AVGPOST=0.9991;RSQ=0.9921;ERATE=0.0003;THETA=0.0008;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 57954477 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7116;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57954565 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0515;AVGPOST=0.9994;RSQ=0.9944;ERATE=0.0004;THETA=0.0004;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 57954677 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0492;AVGPOST=0.9988;RSQ=0.9910;ERATE=0.0004;THETA=0.0005;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 57954836 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9882;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57954964 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0512;AVGPOST=0.9994;RSQ=0.9946;ERATE=0.0004;THETA=0.0005;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 57955107 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8333;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57955150 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6496;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57955194 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0364;AVGPOST=0.9996;RSQ=0.9967;ERATE=0.0003;THETA=0.0012;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 57955210 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57955228 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57955239 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9940;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 57955262 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57955304 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57955314 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57955345 . GA G 1822 PASS INDEL;BAVGPOST=0.977;BRSQ=0.918;LDAF=0.1194;AVGPOST=0.9832;RSQ=0.9443;ERATE=0.0014;THETA=0.0004;AC=256;AN=2184 GT:DS:GL:BD 0.11721612 0 1 57955347 . AC A 17992 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1176;AVGPOST=0.9988;RSQ=0.9957;ERATE=0.0004;THETA=0.0004;AC=257;AN=2184 GT:DS:GL:BD 0.11767399 0 1 57955349 . CT C 987 PASS INDEL;BAVGPOST=0.862;BRSQ=0.539;LDAF=0.1998;AVGPOST=0.8233;RSQ=0.5510;ERATE=0.0066;THETA=0.0006;AC=302;AN=2184 GT:DS:GL:BD 0.13827839 0 1 57955433 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0513;AVGPOST=0.9998;RSQ=0.9980;ERATE=0.0003;THETA=0.0005;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 57955470 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0179;AVGPOST=0.9998;RSQ=0.9954;ERATE=0.0003;THETA=0.0005;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 57955571 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57955610 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0052;AVGPOST=0.9975;RSQ=0.8033;ERATE=0.0010;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 57955706 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0114;AVGPOST=0.9989;RSQ=0.9709;ERATE=0.0004;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 57955716 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.680;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8864;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57955842 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6599;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57955921 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57955970 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.3493;AVGPOST=0.9945;RSQ=0.9916;ERATE=0.0004;THETA=0.0005;AC=765;AN=2184 GT:DS:GL:BD 0.35027471 0 1 57955986 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.960;LDAF=0.0381;AVGPOST=0.9982;RSQ=0.9822;ERATE=0.0004;THETA=0.0005;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 57955987 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.956;LDAF=0.0275;AVGPOST=0.9978;RSQ=0.9682;ERATE=0.0005;THETA=0.0014;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 57956018 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0134;AVGPOST=0.9984;RSQ=0.9490;ERATE=0.0005;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 57956129 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0386;AVGPOST=0.9995;RSQ=0.9943;ERATE=0.0003;THETA=0.0008;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 57956177 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.835;LDAF=0.0128;AVGPOST=0.9979;RSQ=0.9320;ERATE=0.0004;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 57956199 . T TA 63 PASS INDEL;BAVGPOST=0.988;BRSQ=0.451;LDAF=0.0245;AVGPOST=0.9644;RSQ=0.3993;ERATE=0.0084;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 57956261 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0055;AVGPOST=0.9997;RSQ=0.9830;ERATE=0.0003;THETA=0.0010;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 57956290 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1922;AVGPOST=0.9985;RSQ=0.9972;ERATE=0.0004;THETA=0.0007;AC=420;AN=2184 GT:DS:GL:BD 0.19230770 0 1 57956297 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.748;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7557;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57956328 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1923;AVGPOST=0.9986;RSQ=0.9977;ERATE=0.0004;THETA=0.0008;AC=420;AN=2184 GT:DS:GL:BD 0.19230770 0 1 57956359 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6122;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57956387 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1026;AVGPOST=0.9987;RSQ=0.9949;ERATE=0.0004;THETA=0.0004;AC=224;AN=2184 GT:DS:GL:BD 0.10256410 0 1 57956588 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0121;AVGPOST=0.9989;RSQ=0.9660;ERATE=0.0003;THETA=0.0008;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 57956644 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0184;AVGPOST=0.9997;RSQ=0.9914;ERATE=0.0003;THETA=0.0006;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 57956652 . AT A 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57956702 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1928;AVGPOST=0.9991;RSQ=0.9984;ERATE=0.0003;THETA=0.0024;AC=421;AN=2184 GT:DS:GL:BD 0.19276556 0 1 57956783 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0080;AVGPOST=0.9984;RSQ=0.9070;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 57956822 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.992;LDAF=0.3473;AVGPOST=0.9868;RSQ=0.9808;ERATE=0.0014;THETA=0.0004;AC=757;AN=2184 GT:DS:GL:BD 0.34661171 0 1 57956826 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0855;AVGPOST=0.9977;RSQ=0.9897;ERATE=0.0004;THETA=0.0003;AC=185;AN=2184 GT:DS:GL:BD 0.08470696 0 1 57956827 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.734;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6422;ERATE=0.0003;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57956828 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.669;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7838;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57956961 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.697;LDAF=0.0151;AVGPOST=0.9940;RSQ=0.8638;ERATE=0.0005;THETA=0.0011;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 57956969 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.953;BRSQ=0.884;LDAF=0.2331;AVGPOST=0.9710;RSQ=0.9397;ERATE=0.0020;THETA=0.0042;AC=504;AN=2184 GT:DS:GL:BD 0.23076923 0 1 57956992 . C CGGGA 456 PASS INDEL;BAVGPOST=0.973;BRSQ=0.367;LDAF=0.0194;AVGPOST=0.9743;RSQ=0.5212;ERATE=0.0006;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 57957049 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.963;LDAF=0.1249;AVGPOST=0.9861;RSQ=0.9550;ERATE=0.0012;THETA=0.0005;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 57957114 . T TA 3001 PASS INDEL;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0391;AVGPOST=0.9982;RSQ=0.9826;ERATE=0.0004;THETA=0.0006;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 57957235 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0033;AVGPOST=0.9986;RSQ=0.8559;ERATE=0.0003;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57957370 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6108;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57957545 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6530;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57957597 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0233;AVGPOST=0.9994;RSQ=0.9913;ERATE=0.0003;THETA=0.0026;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 57957652 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.974;LDAF=0.5788;AVGPOST=0.9844;RSQ=0.9778;ERATE=0.0020;THETA=0.0005;AC=1264;AN=2184 GT:DS:GL:BD 0.57875460 1 1 57957657 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.972;LDAF=0.6049;AVGPOST=0.9850;RSQ=0.9781;ERATE=0.0005;THETA=0.0009;AC=1322;AN=2184 GT:DS:GL:BD 0.60531133 1 1 57957700 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0386;AVGPOST=0.9994;RSQ=0.9940;ERATE=0.0004;THETA=0.0015;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 57957739 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0232;AVGPOST=0.9991;RSQ=0.9855;ERATE=0.0003;THETA=0.0046;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 57958015 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0057;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57958048 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0382;AVGPOST=0.9988;RSQ=0.9876;ERATE=0.0003;THETA=0.0108;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 57958098 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0181;AVGPOST=0.9995;RSQ=0.9886;ERATE=0.0003;THETA=0.0112;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 57958216 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0181;AVGPOST=0.9994;RSQ=0.9852;ERATE=0.0004;THETA=0.0008;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 57958234 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.986;LDAF=0.1301;AVGPOST=0.9940;RSQ=0.9806;ERATE=0.0003;THETA=0.0134;AC=281;AN=2184 GT:DS:GL:BD 0.12866300 0 1 57958321 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0129;AVGPOST=0.9988;RSQ=0.9707;ERATE=0.0003;THETA=0.0067;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 57958393 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.870;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6594;ERATE=0.0007;THETA=0.0172;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57958440 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.789;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5040;ERATE=0.0003;THETA=0.0053;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57958601 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.750;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8753;ERATE=0.0003;THETA=0.0032;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57958863 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0042;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57958886 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6738;ERATE=0.0004;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57958943 . AAACATT A 1090 PASS INDEL;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0076;AVGPOST=0.9984;RSQ=0.9041;ERATE=0.0005;THETA=0.0063;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 57959022 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0545;AVGPOST=0.9968;RSQ=0.9801;ERATE=0.0010;THETA=0.0129;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 57959028 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7832;ERATE=0.0005;THETA=0.0120;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57959083 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0104;AVGPOST=0.9992;RSQ=0.9619;ERATE=0.0005;THETA=0.0035;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 57959087 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0058;AVGPOST=0.9975;RSQ=0.8527;ERATE=0.0004;THETA=0.0205;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 57959158 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.1599;AVGPOST=0.9931;RSQ=0.9804;ERATE=0.0004;THETA=0.0022;AC=344;AN=2184 GT:DS:GL:BD 0.15750916 0 1 57959170 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.691;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7434;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57959180 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0374;AVGPOST=0.9976;RSQ=0.9746;ERATE=0.0004;THETA=0.0015;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 57959199 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6318;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57959202 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8275;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57959279 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7017;ERATE=0.0003;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57959358 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0082;AVGPOST=0.9992;RSQ=0.9600;ERATE=0.0003;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 57959384 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.518;LDAF=0.0009;AVGPOST=0.9988;RSQ=0.4002;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57959434 . GCT G 1917 PASS INDEL;BAVGPOST=0.980;BRSQ=0.856;LDAF=0.0606;AVGPOST=0.9724;RSQ=0.8341;ERATE=0.0075;THETA=0.0012;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 57959461 . CAT C 1345 PASS INDEL;BAVGPOST=0.987;BRSQ=0.871;LDAF=0.0386;AVGPOST=0.9918;RSQ=0.9207;ERATE=0.0015;THETA=0.0006;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 57959463 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0438;AVGPOST=0.9973;RSQ=0.9801;ERATE=0.0004;THETA=0.0031;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 57959523 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57959536 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6327;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57959581 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=0.9999;RSQ=0.9931;ERATE=0.0003;THETA=0.0014;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 57959597 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5726;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57959651 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0562;AVGPOST=0.9983;RSQ=0.9899;ERATE=0.0004;THETA=0.0018;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 57959659 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0012;AVGPOST=0.9997;RSQ=0.9487;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57959672 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0014;AVGPOST=0.9994;RSQ=0.8397;ERATE=0.0003;THETA=0.0037;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57959698 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0022;AVGPOST=0.9977;RSQ=0.6095;ERATE=0.0006;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57959749 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0104;AVGPOST=0.9990;RSQ=0.9620;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 57960172 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0027;AVGPOST=0.9986;RSQ=0.7855;ERATE=0.0005;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57960172 rs11406822 C CA 17348 PASS INDEL;BAVGPOST=0.996;BRSQ=0.997;LDAF=0.1662;AVGPOST=0.9957;RSQ=0.9877;ERATE=0.0006;THETA=0.0006;AC=361;AN=2184 GT:DS:GL:BD 0.16529304 0 1 57960295 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57960386 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0097;AVGPOST=0.9998;RSQ=0.9911;ERATE=0.0003;THETA=0.0011;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 57960505 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0309;AVGPOST=0.9983;RSQ=0.9819;ERATE=0.0003;THETA=0.0007;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 57960524 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9322;ERATE=0.0003;THETA=0.0028;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 57960659 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9508;ERATE=0.0005;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57960673 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9632;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57960749 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5494;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57960915 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0435;AVGPOST=0.9997;RSQ=0.9975;ERATE=0.0003;THETA=0.0007;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 57961047 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.816;LDAF=0.0025;AVGPOST=0.9979;RSQ=0.6391;ERATE=0.0009;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57961086 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9019;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57961103 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0558;AVGPOST=0.9998;RSQ=0.9984;ERATE=0.0003;THETA=0.0006;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 57961110 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57961127 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5838;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57961229 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7782;ERATE=0.0005;THETA=0.0022;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57961339 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9178;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57961358 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0025;AVGPOST=0.9985;RSQ=0.7764;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57961437 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0101;AVGPOST=0.9997;RSQ=0.9867;ERATE=0.0003;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 57961554 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0646;AVGPOST=0.9996;RSQ=0.9977;ERATE=0.0003;THETA=0.0007;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 57961571 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0099;AVGPOST=0.9993;RSQ=0.9749;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 57961642 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0435;AVGPOST=0.9998;RSQ=0.9979;ERATE=0.0003;THETA=0.0004;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 57961667 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6941;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57961684 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.745;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.7074;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57961732 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57961771 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0028;AVGPOST=0.9986;RSQ=0.8335;ERATE=0.0003;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57961866 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57961895 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6237;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57961946 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.6016;AVGPOST=0.9943;RSQ=0.9920;ERATE=0.0009;THETA=0.0005;AC=1315;AN=2184 GT:DS:GL:BD 0.60210621 1 1 57961986 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4977;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57961990 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0097;AVGPOST=0.9998;RSQ=0.9909;ERATE=0.0003;THETA=0.0008;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 57962017 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4866;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57962085 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.617;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7599;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57962109 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7302;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57962126 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0315;AVGPOST=0.9990;RSQ=0.9874;ERATE=0.0004;THETA=0.0003;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 57962195 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57962198 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.823;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57962301 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0066;AVGPOST=0.9997;RSQ=0.9769;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 57962373 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.5959;AVGPOST=0.9970;RSQ=0.9959;ERATE=0.0005;THETA=0.0002;AC=1303;AN=2184 GT:DS:GL:BD 0.59661174 1 1 57962423 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8602;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57962635 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57962653 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0085;AVGPOST=0.9995;RSQ=0.9742;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 57962719 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.6440;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57963093 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5424;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57963098 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7282;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57963136 . AC A 43 PASS INDEL;BAVGPOST=1.000;BRSQ=0.710;LDAF=0.0009;AVGPOST=0.9988;RSQ=0.4114;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57963156 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57963216 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0066;AVGPOST=0.9996;RSQ=0.9774;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 57963311 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0068;AVGPOST=0.9991;RSQ=0.9446;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 57963323 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0046;AVGPOST=0.9989;RSQ=0.9017;ERATE=0.0004;THETA=0.0030;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 57963390 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57963410 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.801;LDAF=0.0022;AVGPOST=0.9988;RSQ=0.8268;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57963411 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1618;AVGPOST=0.9963;RSQ=0.9903;ERATE=0.0004;THETA=0.0005;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 57963418 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57963516 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57963575 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0056;AVGPOST=0.9993;RSQ=0.9370;ERATE=0.0005;THETA=0.0013;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 57963653 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0102;AVGPOST=0.9997;RSQ=0.9870;ERATE=0.0004;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 57963869 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0080;AVGPOST=0.9983;RSQ=0.9271;ERATE=0.0005;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 57963902 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0003;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57964081 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0029;AVGPOST=0.9992;RSQ=0.8774;ERATE=0.0013;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57964138 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.9175;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57964246 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57964334 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9643;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57964460 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7349;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57964487 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0068;AVGPOST=0.9993;RSQ=0.9517;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 57964510 . A ACAG 880 PASS INDEL;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0049;AVGPOST=0.9969;RSQ=0.7763;ERATE=0.0005;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 57964536 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57964557 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5709;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57964558 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57964586 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0373;AVGPOST=0.9994;RSQ=0.9932;ERATE=0.0004;THETA=0.0005;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 57964898 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.983;LDAF=0.0648;AVGPOST=0.9963;RSQ=0.9801;ERATE=0.0008;THETA=0.0014;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 57964924 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.702;LDAF=0.0030;AVGPOST=0.9953;RSQ=0.3793;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57964945 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7320;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57965029 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57965114 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0762;AVGPOST=0.9958;RSQ=0.9763;ERATE=0.0004;THETA=0.0006;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 57965220 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.7579;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57965292 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8005;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57965312 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57965319 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9843;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 57965430 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0100;AVGPOST=0.9993;RSQ=0.9658;ERATE=0.0004;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 57965433 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7094;ERATE=0.0009;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57965519 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.919;LDAF=0.0108;AVGPOST=0.9966;RSQ=0.9037;ERATE=0.0004;THETA=0.0012;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 57965546 . C CT 94 PASS INDEL;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6733;ERATE=0.0005;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57965584 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9064;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57965778 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4994;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57965806 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6674;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57965872 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0645;AVGPOST=0.9997;RSQ=0.9982;ERATE=0.0003;THETA=0.0006;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 57965978 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.795;LDAF=0.0088;AVGPOST=0.9959;RSQ=0.8158;ERATE=0.0005;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 57966155 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0052;AVGPOST=0.9988;RSQ=0.8972;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 57966414 . G GA 37 PASS INDEL;BAVGPOST=0.993;BRSQ=0.488;LDAF=0.0156;AVGPOST=0.9817;RSQ=0.5164;ERATE=0.0048;THETA=0.0008;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 57966526 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9812;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 57966528 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8011;AVGPOST=0.9979;RSQ=0.9954;ERATE=0.0004;THETA=0.0006;AC=1750;AN=2184 GT:DS:GL:BD 0.80128205 1 1 57966601 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5181;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57966675 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9424;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57966763 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6392;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57966810 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57966812 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.9741;AVGPOST=0.9985;RSQ=0.9790;ERATE=0.0003;THETA=0.0006;AC=2128;AN=2184 GT:DS:GL:BD 0.97435898 1 1 57967053 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.774;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57967065 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0682;AVGPOST=0.9989;RSQ=0.9935;ERATE=0.0003;THETA=0.0010;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 57967146 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0371;AVGPOST=0.9999;RSQ=0.9990;ERATE=0.0003;THETA=0.0003;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 57967171 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.901;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9359;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57967185 . TA T 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5535;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57967190 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0059;AVGPOST=0.9986;RSQ=0.8965;ERATE=0.0015;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 57967471 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0048;AVGPOST=0.9989;RSQ=0.9036;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 57967594 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6426;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57967606 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9436;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57967619 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6199;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57967657 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.910;LDAF=0.0081;AVGPOST=0.9981;RSQ=0.8966;ERATE=0.0004;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 57967711 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.680;LDAF=0.0035;AVGPOST=0.9968;RSQ=0.6549;ERATE=0.0006;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57967753 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.976;LDAF=0.0637;AVGPOST=0.9989;RSQ=0.9933;ERATE=0.0004;THETA=0.0004;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 57967759 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0055;AVGPOST=0.9965;RSQ=0.7360;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 57967870 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0116;AVGPOST=0.9984;RSQ=0.9369;ERATE=0.0006;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 57967968 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.653;LDAF=0.0023;AVGPOST=0.9963;RSQ=0.3923;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57967969 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.646;LDAF=0.0080;AVGPOST=0.9947;RSQ=0.7265;ERATE=0.0007;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 57968007 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.915;LDAF=0.0715;AVGPOST=0.9795;RSQ=0.8964;ERATE=0.0033;THETA=0.0005;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 57968010 . AG A 12150 PASS INDEL;BAVGPOST=1.000;BRSQ=0;LDAF=0.9994;AVGPOST=0.9988;RSQ=0.1028;ERATE=0.0004;THETA=0.0005;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 57968069 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.864;LDAF=0.0128;AVGPOST=0.9951;RSQ=0.8567;ERATE=0.0003;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 57968130 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.9717;AVGPOST=0.9990;RSQ=0.9874;ERATE=0.0004;THETA=0.0003;AC=2123;AN=2184 GT:DS:GL:BD 0.97206962 1 1 57968215 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57968267 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.963;LDAF=0.0158;AVGPOST=0.9990;RSQ=0.9763;ERATE=0.0004;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 57968561 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0097;AVGPOST=0.9997;RSQ=0.9863;ERATE=0.0004;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 57968598 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.2249;AVGPOST=0.9963;RSQ=0.9928;ERATE=0.0008;THETA=0.0008;AC=490;AN=2184 GT:DS:GL:BD 0.22435898 0 1 57968878 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8656;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57968880 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.2316;AVGPOST=0.9987;RSQ=0.9974;ERATE=0.0004;THETA=0.0004;AC=505;AN=2184 GT:DS:GL:BD 0.23122710 0 1 57968896 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6624;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57968898 . TG T 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0021;AVGPOST=0.9987;RSQ=0.7125;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57968922 . CT C 5 PASS INDEL;BAVGPOST=0.999;BRSQ=0.596;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57969304 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0031;AVGPOST=0.9992;RSQ=0.8887;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57969451 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6733;ERATE=0.0011;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57969519 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57969583 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.9718;AVGPOST=0.9991;RSQ=0.9877;ERATE=0.0003;THETA=0.0005;AC=2123;AN=2184 GT:DS:GL:BD 0.97206962 1 1 57969592 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0648;AVGPOST=0.9983;RSQ=0.9883;ERATE=0.0003;THETA=0.0004;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 57969608 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7882;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57969679 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1635;AVGPOST=0.9975;RSQ=0.9935;ERATE=0.0004;THETA=0.0007;AC=357;AN=2184 GT:DS:GL:BD 0.16346154 0 1 57969874 . TTAAAG T 229 PASS INDEL;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0033;AVGPOST=0.9974;RSQ=0.7220;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 57970132 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0643;AVGPOST=0.9992;RSQ=0.9958;ERATE=0.0003;THETA=0.0004;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 57970154 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0650;AVGPOST=0.9999;RSQ=0.9991;ERATE=0.0003;THETA=0.0005;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 57970179 . TA T 25 PASS INDEL;BAVGPOST=1.000;BRSQ=0.762;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57970197 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0652;AVGPOST=0.9994;RSQ=0.9964;ERATE=0.0004;THETA=0.0006;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 57970255 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0499;AVGPOST=0.9997;RSQ=0.9975;ERATE=0.0003;THETA=0.0014;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 57970263 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.6209;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57970413 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4507;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57970425 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.7246;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57970433 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57970559 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0650;AVGPOST=0.9999;RSQ=0.9991;ERATE=0.0003;THETA=0.0005;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 57970656 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57970690 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57970787 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57970866 . CTT C 65 PASS INDEL;BAVGPOST=0.999;BRSQ=0.753;LDAF=0.0020;AVGPOST=0.9969;RSQ=0.3543;ERATE=0.0006;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57971129 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0139;AVGPOST=0.9990;RSQ=0.9658;ERATE=0.0004;THETA=0.0007;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 57971211 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0402;AVGPOST=0.9993;RSQ=0.9932;ERATE=0.0004;THETA=0.0006;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 57971335 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57971412 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.560;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5291;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57971535 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0650;AVGPOST=0.9994;RSQ=0.9963;ERATE=0.0004;THETA=0.0008;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 57971586 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.692;LDAF=0.0049;AVGPOST=0.9979;RSQ=0.8152;ERATE=0.0007;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 57971662 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9766;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 57971846 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0675;AVGPOST=0.9979;RSQ=0.9886;ERATE=0.0007;THETA=0.0003;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 57971978 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8786;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57972043 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0163;AVGPOST=0.9989;RSQ=0.9744;ERATE=0.0003;THETA=0.0007;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 57972069 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.907;LDAF=0.0070;AVGPOST=0.9979;RSQ=0.8692;ERATE=0.0009;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 57972141 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7220;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57972352 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0649;AVGPOST=0.9999;RSQ=0.9991;ERATE=0.0003;THETA=0.0006;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 57972539 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57972574 . TC T 68 PASS INDEL;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4596;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57972601 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57972681 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57972683 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1632;AVGPOST=0.9953;RSQ=0.9891;ERATE=0.0004;THETA=0.0004;AC=354;AN=2184 GT:DS:GL:BD 0.16208792 0 1 57972884 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.855;LDAF=0.0049;AVGPOST=0.9981;RSQ=0.8536;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 57972920 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9351;AVGPOST=0.9999;RSQ=0.9994;ERATE=0.0003;THETA=0.0007;AC=2042;AN=2184 GT:DS:GL:BD 0.93498170 1 1 57972937 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0045;AVGPOST=0.9999;RSQ=0.9903;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 57973038 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57973116 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0653;AVGPOST=0.9993;RSQ=0.9968;ERATE=0.0003;THETA=0.0005;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 57973253 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57973284 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6656;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57973322 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0339;AVGPOST=0.9987;RSQ=0.9865;ERATE=0.0003;THETA=0.0003;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 57973325 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0023;AVGPOST=0.9987;RSQ=0.7757;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57973359 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0036;AVGPOST=0.9997;RSQ=0.9694;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 57973456 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0102;AVGPOST=0.9991;RSQ=0.9628;ERATE=0.0004;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 57973556 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0046;AVGPOST=0.9991;RSQ=0.9274;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 57973603 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57973689 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0117;AVGPOST=0.9989;RSQ=0.9611;ERATE=0.0004;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 57973730 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0100;AVGPOST=0.9991;RSQ=0.9615;ERATE=0.0004;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 57973736 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 57973807 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0034;AVGPOST=0.9991;RSQ=0.8878;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 57973847 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0019;AVGPOST=0.9993;RSQ=0.8237;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57973848 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.960;LDAF=0.2448;AVGPOST=0.9776;RSQ=0.9562;ERATE=0.0008;THETA=0.0006;AC=525;AN=2184 GT:DS:GL:BD 0.24038461 0 1 57973909 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57973930 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57973958 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0499;AVGPOST=0.9998;RSQ=0.9986;ERATE=0.0003;THETA=0.0002;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 57974012 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0437;AVGPOST=0.9995;RSQ=0.9957;ERATE=0.0003;THETA=0.0003;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 57974062 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0063;AVGPOST=0.9974;RSQ=0.8561;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 57974186 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.7239;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57974285 . CACAG C 1624 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0115;AVGPOST=0.9996;RSQ=0.9846;ERATE=0.0004;THETA=0.0007;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 57974383 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8176;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57974467 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0068;AVGPOST=0.9992;RSQ=0.9497;ERATE=0.0004;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 57974607 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.715;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5129;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57974612 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.832;LDAF=0.0110;AVGPOST=0.9920;RSQ=0.7147;ERATE=0.0005;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 57974653 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0056;AVGPOST=0.9962;RSQ=0.7233;ERATE=0.0005;THETA=0.0012;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 57974659 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.503;LDAF=0.0085;AVGPOST=0.9912;RSQ=0.5899;ERATE=0.0007;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 57974684 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.525;LDAF=0.0044;AVGPOST=0.9954;RSQ=0.5533;ERATE=0.0010;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57974781 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5604;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57974852 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0062;AVGPOST=0.9992;RSQ=0.9374;ERATE=0.0004;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 57974916 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7393;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57974935 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0013;AVGPOST=0.9996;RSQ=0.9249;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57975023 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57975111 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2599;AVGPOST=0.9989;RSQ=0.9976;ERATE=0.0004;THETA=0.0004;AC=567;AN=2184 GT:DS:GL:BD 0.25961539 0 1 57975135 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0035;AVGPOST=0.9990;RSQ=0.9063;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 57975197 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1618;AVGPOST=0.9995;RSQ=0.9982;ERATE=0.0003;THETA=0.0005;AC=352;AN=2184 GT:DS:GL:BD 0.16117217 0 1 57975279 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.7557;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57975368 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8555;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57975510 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5871;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57975535 . GAC G 98 PASS INDEL;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0020;AVGPOST=0.9993;RSQ=0.8367;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57975542 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7261;ERATE=0.0006;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57975661 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0019;AVGPOST=0.9993;RSQ=0.8383;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57975842 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57975899 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8214;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57975943 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0652;AVGPOST=0.9995;RSQ=0.9970;ERATE=0.0003;THETA=0.0004;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 57975957 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8974;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57976129 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57976192 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8096;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57976249 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0791;AVGPOST=0.9966;RSQ=0.9800;ERATE=0.0004;THETA=0.0009;AC=171;AN=2184 GT:DS:GL:BD 0.07829671 0 1 57976282 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57976303 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0044;AVGPOST=0.9992;RSQ=0.9277;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 57976384 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57976474 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8455;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57976482 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1614;AVGPOST=0.9979;RSQ=0.9937;ERATE=0.0006;THETA=0.0005;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 57976489 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5618;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57976519 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1619;AVGPOST=0.9980;RSQ=0.9937;ERATE=0.0004;THETA=0.0007;AC=352;AN=2184 GT:DS:GL:BD 0.16117217 0 1 57976605 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0032;AVGPOST=0.9983;RSQ=0.8099;ERATE=0.0006;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57976606 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.6204;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57976917 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0363;AVGPOST=0.9973;RSQ=0.9728;ERATE=0.0005;THETA=0.0008;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 57977041 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0103;AVGPOST=0.9993;RSQ=0.9724;ERATE=0.0003;THETA=0.0009;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 57977089 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=0.9998;RSQ=0.9908;ERATE=0.0003;THETA=0.0012;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 57977238 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5929;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57977398 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0034;AVGPOST=0.9994;RSQ=0.9202;ERATE=0.0004;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 57977469 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57977471 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8473;ERATE=0.0009;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57977490 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.6386;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57977538 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0014;AVGPOST=0.9994;RSQ=0.8068;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57977629 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0085;AVGPOST=0.9974;RSQ=0.8816;ERATE=0.0005;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 57977660 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7205;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57977949 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0032;AVGPOST=0.9972;RSQ=0.7021;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 57978046 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8726;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57978279 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7298;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57978286 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57978317 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0013;AVGPOST=0.9997;RSQ=0.8989;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57978490 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0026;AVGPOST=0.9980;RSQ=0.6905;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57978520 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0434;AVGPOST=0.9998;RSQ=0.9979;ERATE=0.0003;THETA=0.0005;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 57978559 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.771;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5516;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57978761 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57978807 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0059;AVGPOST=0.9969;RSQ=0.8270;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 57978818 . AC A 93 PASS INDEL;BAVGPOST=0.980;BRSQ=0.421;LDAF=0.0355;AVGPOST=0.9448;RSQ=0.3574;ERATE=0.0109;THETA=0.0007;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 57978870 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7651;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57978920 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8472;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57979245 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7303;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57979292 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.9596;AVGPOST=0.9995;RSQ=0.9952;ERATE=0.0004;THETA=0.0004;AC=2096;AN=2184 GT:DS:GL:BD 0.95970696 1 1 57979301 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0064;AVGPOST=0.9998;RSQ=0.9867;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 57979342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57979393 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0553;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 57979412 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1522;AVGPOST=0.9967;RSQ=0.9913;ERATE=0.0005;THETA=0.0005;AC=330;AN=2184 GT:DS:GL:BD 0.15109891 0 1 57979440 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9710;AVGPOST=0.9994;RSQ=0.9903;ERATE=0.0003;THETA=0.0007;AC=2121;AN=2184 GT:DS:GL:BD 0.97115386 1 1 57979508 . CA C 44 PASS INDEL;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0022;AVGPOST=0.9986;RSQ=0.7690;ERATE=0.0003;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57979531 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0024;AVGPOST=0.9986;RSQ=0.7898;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57979582 rs113913637 CT C 5611 PASS INDEL;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0556;AVGPOST=0.9992;RSQ=0.9950;ERATE=0.0004;THETA=0.0008;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 57979583 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.974;LDAF=0.5777;AVGPOST=0.9883;RSQ=0.9845;ERATE=0.0009;THETA=0.0003;AC=1258;AN=2184 GT:DS:GL:BD 0.57600731 1 1 57979666 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.5630;AVGPOST=0.9949;RSQ=0.9928;ERATE=0.0009;THETA=0.0006;AC=1231;AN=2184 GT:DS:GL:BD 0.56364471 1 1 57979686 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7338;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57979688 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0553;AVGPOST=0.9998;RSQ=0.9987;ERATE=0.0003;THETA=0.0004;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 57979690 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8824;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57979761 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.870;LDAF=0.0054;AVGPOST=0.9992;RSQ=0.9367;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 57979819 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0555;AVGPOST=0.9995;RSQ=0.9967;ERATE=0.0003;THETA=0.0004;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 57979844 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0551;AVGPOST=0.9990;RSQ=0.9932;ERATE=0.0004;THETA=0.0005;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 57979958 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0554;AVGPOST=0.9998;RSQ=0.9987;ERATE=0.0003;THETA=0.0004;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 57979975 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0005;AVGPOST=0.9994;RSQ=0.5226;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57979999 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0555;AVGPOST=0.9996;RSQ=0.9974;ERATE=0.0003;THETA=0.0008;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 57980037 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0077;AVGPOST=0.9991;RSQ=0.9495;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 57980077 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0554;AVGPOST=0.9998;RSQ=0.9987;ERATE=0.0003;THETA=0.0004;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 57980084 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1627;AVGPOST=0.9971;RSQ=0.9914;ERATE=0.0005;THETA=0.0010;AC=354;AN=2184 GT:DS:GL:BD 0.16208792 0 1 57980211 . CT C 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.695;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4578;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57980251 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.681;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.6522;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57980448 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6061;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57980501 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0564;AVGPOST=0.9997;RSQ=0.9977;ERATE=0.0003;THETA=0.0007;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 57980581 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57980631 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.5660;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57980659 . ACT A 325 PASS INDEL;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0033;AVGPOST=0.9984;RSQ=0.7945;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57980700 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0561;AVGPOST=0.9991;RSQ=0.9942;ERATE=0.0004;THETA=0.0005;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 57980806 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0040;AVGPOST=0.9979;RSQ=0.7828;ERATE=0.0005;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 57980859 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7541;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57980914 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57980966 . A ATC 39 PASS INDEL;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0004;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 57980998 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.721;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57981042 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57981062 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4399;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57981090 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57981105 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57981226 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0054;AVGPOST=0.9995;RSQ=0.9622;ERATE=0.0004;THETA=0.0036;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 57981255 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.675;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6616;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57981301 . CT C 1062 PASS INDEL;BAVGPOST=0.998;BRSQ=0.918;LDAF=0.0093;AVGPOST=0.9966;RSQ=0.8547;ERATE=0.0005;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 57981311 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0029;AVGPOST=0.9981;RSQ=0.7612;ERATE=0.0007;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57981336 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.834;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.7192;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57981389 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9232;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57981430 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0563;AVGPOST=0.9982;RSQ=0.9917;ERATE=0.0003;THETA=0.0005;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 57981453 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9009;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57981570 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0559;AVGPOST=0.9990;RSQ=0.9942;ERATE=0.0003;THETA=0.0005;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 57981658 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57981659 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57981685 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0035;AVGPOST=0.9967;RSQ=0.5972;ERATE=0.0012;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57981752 . AT A 55 PASS INDEL;BAVGPOST=0.999;BRSQ=0.751;LDAF=0.0017;AVGPOST=0.9982;RSQ=0.6100;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57981983 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9562;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57981985 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0030;AVGPOST=0.9985;RSQ=0.8312;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57981996 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0063;AVGPOST=0.9992;RSQ=0.9541;ERATE=0.0004;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 57982025 . AAAG A 8669 PASS INDEL;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0540;AVGPOST=0.9961;RSQ=0.9763;ERATE=0.0010;THETA=0.0007;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 57982064 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6332;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57982120 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0548;AVGPOST=0.9979;RSQ=0.9882;ERATE=0.0003;THETA=0.0010;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 57982215 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0567;AVGPOST=0.9985;RSQ=0.9913;ERATE=0.0004;THETA=0.0008;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 57982224 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57982250 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.905;LDAF=0.0214;AVGPOST=0.9935;RSQ=0.8762;ERATE=0.0004;THETA=0.0008;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 57982414 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57982524 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57982693 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57982730 . CAGTTAA C 130 PASS INDEL;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57982813 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.594;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6265;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57982856 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57983024 rs112659222 TTC T 9622 PASS INDEL;BAVGPOST=0.998;BRSQ=0.982;LDAF=0.0550;AVGPOST=0.9992;RSQ=0.9946;ERATE=0.0003;THETA=0.0006;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 57983156 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57983170 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7545;ERATE=0.0003;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57983411 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0549;AVGPOST=0.9999;RSQ=0.9990;ERATE=0.0003;THETA=0.0020;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 57983497 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0549;AVGPOST=0.9999;RSQ=0.9990;ERATE=0.0003;THETA=0.0007;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 57983498 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0302;AVGPOST=0.9988;RSQ=0.9874;ERATE=0.0003;THETA=0.0005;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 57983570 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.961;LDAF=0.0215;AVGPOST=0.9977;RSQ=0.9605;ERATE=0.0004;THETA=0.0002;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 57983620 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8710;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57983623 . CTA C 29 PASS INDEL;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7350;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57983651 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0049;AVGPOST=0.9990;RSQ=0.9272;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 57983652 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0048;AVGPOST=0.9991;RSQ=0.9356;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 57983739 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57983743 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0061;AVGPOST=0.9992;RSQ=0.9437;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 57983780 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57983860 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.827;LDAF=0.0299;AVGPOST=0.9839;RSQ=0.7928;ERATE=0.0036;THETA=0.0007;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 57983863 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.842;LDAF=0.0052;AVGPOST=0.9980;RSQ=0.8498;ERATE=0.0006;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 57983925 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57983976 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57984085 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6524;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57984128 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7976;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57984196 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57984271 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.690;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6411;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57984327 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0553;AVGPOST=0.9989;RSQ=0.9943;ERATE=0.0003;THETA=0.0005;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 57984341 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0546;AVGPOST=0.9987;RSQ=0.9916;ERATE=0.0004;THETA=0.0010;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 57984661 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.994;LDAF=0.5594;AVGPOST=0.9947;RSQ=0.9925;ERATE=0.0005;THETA=0.0004;AC=1222;AN=2184 GT:DS:GL:BD 0.55952382 1 1 57984662 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1616;AVGPOST=0.9973;RSQ=0.9924;ERATE=0.0004;THETA=0.0013;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 57984708 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0094;AVGPOST=0.9965;RSQ=0.8565;ERATE=0.0004;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 57984852 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5749;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57984954 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0045;AVGPOST=0.9995;RSQ=0.9561;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 57984991 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2154;AVGPOST=0.9984;RSQ=0.9957;ERATE=0.0005;THETA=0.0008;AC=469;AN=2184 GT:DS:GL:BD 0.21474358 0 1 57985063 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6426;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57985181 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0443;AVGPOST=0.9993;RSQ=0.9942;ERATE=0.0004;THETA=0.0005;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 57985293 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0060;AVGPOST=0.9996;RSQ=0.9710;ERATE=0.0005;THETA=0.0010;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 57985311 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0057;AVGPOST=0.9994;RSQ=0.9470;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 57985323 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0558;AVGPOST=0.9997;RSQ=0.9980;ERATE=0.0003;THETA=0.0004;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 57985349 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5932;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57985407 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0558;AVGPOST=0.9999;RSQ=0.9990;ERATE=0.0003;THETA=0.0007;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 57985422 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.688;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6634;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57985437 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8371;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57985477 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.758;LDAF=0.0048;AVGPOST=0.9974;RSQ=0.8157;ERATE=0.0006;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 57985484 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.777;LDAF=0.0046;AVGPOST=0.9957;RSQ=0.6414;ERATE=0.0017;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57985546 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7551;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57985574 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5423;ERATE=0.0007;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57985817 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7905;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57985898 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5567;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57986159 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.727;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6163;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57986408 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0548;AVGPOST=0.9997;RSQ=0.9982;ERATE=0.0003;THETA=0.0006;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 57986493 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.706;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6976;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57986555 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0055;AVGPOST=0.9996;RSQ=0.9645;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 57986588 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0560;AVGPOST=0.9996;RSQ=0.9971;ERATE=0.0003;THETA=0.0003;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 57986599 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0560;AVGPOST=0.9996;RSQ=0.9971;ERATE=0.0003;THETA=0.0003;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 57986609 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0558;AVGPOST=1.0000;RSQ=0.9997;ERATE=0.0003;THETA=0.0007;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 57986631 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57986633 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0558;AVGPOST=0.9999;RSQ=0.9990;ERATE=0.0003;THETA=0.0009;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 57986643 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9524;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57986702 . A AC 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57986715 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0557;AVGPOST=0.9999;RSQ=0.9990;ERATE=0.0003;THETA=0.0005;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 57986740 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5854;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57986793 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6141;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57986838 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.994;LDAF=0.5626;AVGPOST=0.9923;RSQ=0.9895;ERATE=0.0005;THETA=0.0024;AC=1231;AN=2184 GT:DS:GL:BD 0.56364471 1 1 57986867 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0559;AVGPOST=0.9998;RSQ=0.9988;ERATE=0.0003;THETA=0.0002;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 57986870 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8889;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57986892 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1610;AVGPOST=0.9961;RSQ=0.9891;ERATE=0.0004;THETA=0.0007;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 57986995 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8742;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57987046 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0446;AVGPOST=0.9990;RSQ=0.9919;ERATE=0.0003;THETA=0.0023;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 57987082 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57987098 . AG A 221 PASS INDEL;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0034;AVGPOST=0.9977;RSQ=0.7221;ERATE=0.0004;THETA=0.0013;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 57987115 rs111787060 G GT 5321 PASS INDEL;BAVGPOST=0.975;BRSQ=0.851;LDAF=0.0905;AVGPOST=0.9507;RSQ=0.7795;ERATE=0.0112;THETA=0.0043;AC=162;AN=2184 GT:DS:GL:BD 0.07417583 0 1 57987204 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0558;AVGPOST=0.9999;RSQ=0.9990;ERATE=0.0003;THETA=0.0010;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 57987253 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.930;LDAF=0.3020;AVGPOST=0.9631;RSQ=0.9392;ERATE=0.0009;THETA=0.0031;AC=649;AN=2184 GT:DS:GL:BD 0.29716116 0 1 57987263 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0558;AVGPOST=0.9996;RSQ=0.9970;ERATE=0.0003;THETA=0.0014;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 57987395 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0560;AVGPOST=0.9995;RSQ=0.9968;ERATE=0.0004;THETA=0.0076;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 57987432 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8259;ERATE=0.0003;THETA=0.0051;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57987455 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0559;AVGPOST=0.9992;RSQ=0.9947;ERATE=0.0003;THETA=0.0055;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 57987499 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.729;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5328;ERATE=0.0003;THETA=0.0176;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57987580 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.411;LDAF=0.0024;AVGPOST=0.9963;RSQ=0.4116;ERATE=0.0007;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57987673 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0545;AVGPOST=0.9939;RSQ=0.9643;ERATE=0.0004;THETA=0.0088;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 57987760 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.934;LDAF=0.0491;AVGPOST=0.9899;RSQ=0.9327;ERATE=0.0006;THETA=0.0054;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 57987778 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.935;LDAF=0.0493;AVGPOST=0.9930;RSQ=0.9545;ERATE=0.0004;THETA=0.0123;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 57987781 rs111419395 C CA 2276 PASS INDEL;BAVGPOST=0.961;BRSQ=0.799;LDAF=0.0923;AVGPOST=0.9321;RSQ=0.7063;ERATE=0.0143;THETA=0.0078;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 57987795 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4655;ERATE=0.0003;THETA=0.0080;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57987807 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.710;LDAF=0.0008;AVGPOST=0.9984;RSQ=0.2547;ERATE=0.0003;THETA=0.0045;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 57987822 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.981;LDAF=0.1704;AVGPOST=0.9894;RSQ=0.9720;ERATE=0.0010;THETA=0.0311;AC=369;AN=2184 GT:DS:GL:BD 0.16895604 0 1 57988011 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.978;LDAF=0.1808;AVGPOST=0.9915;RSQ=0.9786;ERATE=0.0009;THETA=0.0144;AC=389;AN=2184 GT:DS:GL:BD 0.17811355 0 1 57988188 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.949;BRSQ=0.891;LDAF=0.7266;AVGPOST=0.9459;RSQ=0.9023;ERATE=0.0088;THETA=0.0063;AC=1608;AN=2184 GT:DS:GL:BD 0.73626375 1 1 57988200 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.862;LDAF=0.0161;AVGPOST=0.9946;RSQ=0.8761;ERATE=0.0017;THETA=0.0155;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 57988215 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6430;ERATE=0.0004;THETA=0.0109;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57988225 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.964;LDAF=0.1753;AVGPOST=0.9857;RSQ=0.9625;ERATE=0.0007;THETA=0.0328;AC=377;AN=2184 GT:DS:GL:BD 0.17261904 0 1 57988248 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6348;ERATE=0.0003;THETA=0.0180;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57988363 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.970;LDAF=0.0168;AVGPOST=0.9972;RSQ=0.9353;ERATE=0.0005;THETA=0.0290;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 57988366 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.925;LDAF=0.0062;AVGPOST=0.9979;RSQ=0.8668;ERATE=0.0004;THETA=0.0152;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 57988526 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0192;AVGPOST=0.9988;RSQ=0.9736;ERATE=0.0004;THETA=0.0020;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 57988527 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5415;ERATE=0.0006;THETA=0.0084;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57988536 . C CT 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4931;ERATE=0.0004;THETA=0.0125;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57988608 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.9229;ERATE=0.0003;THETA=0.0154;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 57988631 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.829;LDAF=0.0144;AVGPOST=0.9942;RSQ=0.8426;ERATE=0.0004;THETA=0.0107;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 57988661 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0065;AVGPOST=0.9996;RSQ=0.9731;ERATE=0.0003;THETA=0.0096;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 57988665 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.943;LDAF=0.4645;AVGPOST=0.9601;RSQ=0.9461;ERATE=0.0054;THETA=0.0196;AC=1009;AN=2184 GT:DS:GL:BD 0.46199635 0 1 57988763 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0025;AVGPOST=0.9980;RSQ=0.7229;ERATE=0.0005;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57988774 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0035;AVGPOST=0.9993;RSQ=0.9013;ERATE=0.0003;THETA=0.0075;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 57988794 . C CAT 91 PASS INDEL;BAVGPOST=0.998;BRSQ=0.705;LDAF=0.0034;AVGPOST=0.9972;RSQ=0.6657;ERATE=0.0006;THETA=0.0093;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57988801 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.978;LDAF=0.4116;AVGPOST=0.9820;RSQ=0.9759;ERATE=0.0005;THETA=0.0007;AC=893;AN=2184 GT:DS:GL:BD 0.40888280 0 1 57988819 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.9094;ERATE=0.0003;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57988824 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.5981;ERATE=0.0004;THETA=0.0110;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57988835 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.920;LDAF=0.0223;AVGPOST=0.9928;RSQ=0.8649;ERATE=0.0004;THETA=0.0039;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 57989124 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6057;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57989152 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57989156 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.7176;AVGPOST=0.9949;RSQ=0.9905;ERATE=0.0005;THETA=0.0004;AC=1568;AN=2184 GT:DS:GL:BD 0.71794873 1 1 57989162 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0119;AVGPOST=0.9999;RSQ=0.9952;ERATE=0.0003;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 57989201 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57989207 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8770;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57989276 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0119;AVGPOST=1.0000;RSQ=0.9984;ERATE=0.0003;THETA=0.0027;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 57989322 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5841;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57989352 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0076;AVGPOST=0.9989;RSQ=0.9343;ERATE=0.0004;THETA=0.0017;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 57989393 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.905;LDAF=0.0064;AVGPOST=0.9972;RSQ=0.8364;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 57989423 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7160;AVGPOST=0.9968;RSQ=0.9935;ERATE=0.0004;THETA=0.0004;AC=1565;AN=2184 GT:DS:GL:BD 0.71657509 1 1 57989532 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.950;BRSQ=0.908;LDAF=0.6711;AVGPOST=0.9390;RSQ=0.9001;ERATE=0.0085;THETA=0.0006;AC=1487;AN=2184 GT:DS:GL:BD 0.68086082 1 1 57989578 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0085;AVGPOST=0.9871;RSQ=0.4892;ERATE=0.0004;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 57989596 . C CA 102 PASS INDEL;BAVGPOST=0.989;BRSQ=0.473;LDAF=0.0192;AVGPOST=0.9717;RSQ=0.4124;ERATE=0.0051;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 57989600 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0124;AVGPOST=0.9985;RSQ=0.9574;ERATE=0.0004;THETA=0.0002;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 57989689 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57989728 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0101;AVGPOST=0.9993;RSQ=0.9720;ERATE=0.0003;THETA=0.0009;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 57989754 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8118;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57989869 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.862;LDAF=0.0048;AVGPOST=0.9992;RSQ=0.9258;ERATE=0.0003;THETA=0.0022;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 57990019 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7494;ERATE=0.0004;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57990039 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0078;AVGPOST=0.9999;RSQ=0.9944;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 57990148 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5830;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57990196 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57990209 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0066;AVGPOST=0.9994;RSQ=0.9581;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 57990308 . AG A 108 PASS INDEL;BAVGPOST=0.999;BRSQ=0.766;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.6858;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57990421 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0016;AVGPOST=0.9976;RSQ=0.4106;ERATE=0.0007;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57990476 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6434;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57990520 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57990594 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7028;AVGPOST=0.9972;RSQ=0.9950;ERATE=0.0005;THETA=0.0006;AC=1536;AN=2184 GT:DS:GL:BD 0.70329672 1 1 57990783 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0119;AVGPOST=1.0000;RSQ=0.9984;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 57991087 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7099;ERATE=0.0004;THETA=0.0019;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57991091 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6007;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57991104 . T TA 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0013;AVGPOST=0.9981;RSQ=0.3958;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57991233 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.9685;AVGPOST=0.9989;RSQ=0.9853;ERATE=0.0004;THETA=0.0020;AC=2115;AN=2184 GT:DS:GL:BD 0.96840662 1 1 57991246 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57991271 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.7016;AVGPOST=0.9942;RSQ=0.9895;ERATE=0.0017;THETA=0.0007;AC=1532;AN=2184 GT:DS:GL:BD 0.70146519 1 1 57991412 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7018;AVGPOST=0.9982;RSQ=0.9964;ERATE=0.0006;THETA=0.0004;AC=1533;AN=2184 GT:DS:GL:BD 0.70192307 1 1 57991433 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57991509 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.758;LDAF=0.0038;AVGPOST=0.9970;RSQ=0.6763;ERATE=0.0007;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57991576 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7072;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57991580 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7024;AVGPOST=0.9980;RSQ=0.9964;ERATE=0.0005;THETA=0.0006;AC=1533;AN=2184 GT:DS:GL:BD 0.70192307 1 1 57991633 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.535;LDAF=0.0039;AVGPOST=0.9953;RSQ=0.4785;ERATE=0.0005;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57991798 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.901;LDAF=0.2367;AVGPOST=0.9630;RSQ=0.9232;ERATE=0.0048;THETA=0.0002;AC=514;AN=2184 GT:DS:GL:BD 0.23534799 0 1 57991808 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0031;AVGPOST=0.9982;RSQ=0.7381;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57991829 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.957;BRSQ=0.920;LDAF=0.6592;AVGPOST=0.9478;RSQ=0.9148;ERATE=0.0053;THETA=0.0002;AC=1462;AN=2184 GT:DS:GL:BD 0.66941392 1 1 57991893 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0043;AVGPOST=0.9985;RSQ=0.8556;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 57991900 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5058;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57992000 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.763;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.4916;ERATE=0.0006;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57992069 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7921;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57992092 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.755;LDAF=0.9965;AVGPOST=0.9949;RSQ=0.4324;ERATE=0.0005;THETA=0.0012;AC=2180;AN=2184 GT:DS:GL:BD 0.99816847 1 1 57992118 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.990;LDAF=0.7135;AVGPOST=0.9955;RSQ=0.9918;ERATE=0.0007;THETA=0.0005;AC=1557;AN=2184 GT:DS:GL:BD 0.71291208 1 1 57992119 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.5379;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57992140 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.2460;AVGPOST=0.9886;RSQ=0.9764;ERATE=0.0011;THETA=0.0004;AC=537;AN=2184 GT:DS:GL:BD 0.24587911 0 1 57992200 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5519;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57992245 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5244;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57992319 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6094;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57992354 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.7011;AVGPOST=0.9968;RSQ=0.9941;ERATE=0.0008;THETA=0.0004;AC=1530;AN=2184 GT:DS:GL:BD 0.70054942 1 1 57992413 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7024;AVGPOST=0.9971;RSQ=0.9955;ERATE=0.0003;THETA=0.0003;AC=1533;AN=2184 GT:DS:GL:BD 0.70192307 1 1 57992525 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6850;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57992602 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.698;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6812;ERATE=0.0004;THETA=0.0040;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57992653 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6876;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57992982 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57993057 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7030;AVGPOST=0.9979;RSQ=0.9968;ERATE=0.0003;THETA=0.0005;AC=1535;AN=2184 GT:DS:GL:BD 0.70283884 1 1 57993108 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8399;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57993221 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57993226 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57993243 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5169;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57993431 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7025;AVGPOST=0.9970;RSQ=0.9949;ERATE=0.0006;THETA=0.0005;AC=1533;AN=2184 GT:DS:GL:BD 0.70192307 1 1 57993509 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.699;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7986;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57993614 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.935;LDAF=0.0097;AVGPOST=0.9966;RSQ=0.8485;ERATE=0.0004;THETA=0.0008;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 57993670 . TCAAG T 2049 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0120;AVGPOST=0.9996;RSQ=0.9857;ERATE=0.0004;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 57993686 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0015;AVGPOST=0.9991;RSQ=0.7462;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57993741 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0120;AVGPOST=0.9998;RSQ=0.9936;ERATE=0.0003;THETA=0.0008;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 57994076 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7355;AVGPOST=0.9963;RSQ=0.9930;ERATE=0.0006;THETA=0.0005;AC=1609;AN=2184 GT:DS:GL:BD 0.73672163 1 1 57994191 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2075;AVGPOST=0.9973;RSQ=0.9939;ERATE=0.0004;THETA=0.0007;AC=451;AN=2184 GT:DS:GL:BD 0.20650183 0 1 57994311 rs59224956 C CAG 60221 PASS INDEL;BAVGPOST=0.955;BRSQ=0.898;LDAF=0.7076;AVGPOST=0.9152;RSQ=0.8419;ERATE=0.0289;THETA=0.0006;AC=1554;AN=2184 GT:DS:GL:BD 0.71153843 1 1 57994455 rs77171164 G GA 104342 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.9681;AVGPOST=0.9990;RSQ=0.9868;ERATE=0.0004;THETA=0.0007;AC=2115;AN=2184 GT:DS:GL:BD 0.96840662 1 1 57994531 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.604;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57994543 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5437;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57994592 rs35682872 GT G 1501 PASS INDEL;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0123;AVGPOST=0.9989;RSQ=0.9652;ERATE=0.0005;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 57994710 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57994783 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7465;AVGPOST=0.9982;RSQ=0.9956;ERATE=0.0006;THETA=0.0005;AC=1631;AN=2184 GT:DS:GL:BD 0.74679488 1 1 57994805 rs112289853 AAGT A 75901 PASS INDEL;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.7325;AVGPOST=0.9936;RSQ=0.9871;ERATE=0.0013;THETA=0.0005;AC=1601;AN=2184 GT:DS:GL:BD 0.73305863 1 1 57994844 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5760;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57995007 . AC A 20 PASS INDEL;BAVGPOST=0.998;BRSQ=0.577;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5054;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57995039 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.7364;AVGPOST=0.9966;RSQ=0.9930;ERATE=0.0004;THETA=0.0005;AC=1609;AN=2184 GT:DS:GL:BD 0.73672163 1 1 57995102 . G GAT 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0018;AVGPOST=0.9988;RSQ=0.7309;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57995164 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5311;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57995290 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.688;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.6380;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57995304 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7232;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57995324 . AG A 55 PASS INDEL;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6534;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57995339 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0071;AVGPOST=0.9994;RSQ=0.9647;ERATE=0.0003;THETA=0.0009;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 57995407 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6786;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57995411 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5892;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57995462 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0062;AVGPOST=0.9984;RSQ=0.8889;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 57995483 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4957;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57995497 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57995609 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57995730 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8403;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57995797 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0119;AVGPOST=0.9999;RSQ=0.9968;ERATE=0.0003;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 57996054 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6659;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57996070 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7290;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57996106 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6351;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57996124 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6657;ERATE=0.0003;THETA=0.0043;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57996309 . TA T 175 PASS INDEL;BAVGPOST=0.998;BRSQ=0.698;LDAF=0.0020;AVGPOST=0.9981;RSQ=0.5828;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57996397 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2438;AVGPOST=0.9955;RSQ=0.9897;ERATE=0.0005;THETA=0.0003;AC=533;AN=2184 GT:DS:GL:BD 0.24404761 0 1 57996488 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57996509 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0024;AVGPOST=0.9974;RSQ=0.6765;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57996533 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8519;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57996582 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0061;AVGPOST=0.9987;RSQ=0.9389;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 57996610 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0050;AVGPOST=0.9997;RSQ=0.9721;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 57996622 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0076;AVGPOST=0.9976;RSQ=0.8646;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 57996626 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0023;AVGPOST=0.9977;RSQ=0.5847;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57996736 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.765;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7292;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 57996739 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7290;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57996857 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.816;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.6830;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 57997032 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6889;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57997039 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0051;AVGPOST=0.9973;RSQ=0.7757;ERATE=0.0013;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 57997145 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0098;AVGPOST=0.9973;RSQ=0.8981;ERATE=0.0003;THETA=0.0010;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 57997191 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0042;AVGPOST=0.9984;RSQ=0.8598;ERATE=0.0003;THETA=0.0015;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 57997216 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9625;AVGPOST=0.9990;RSQ=0.9894;ERATE=0.0004;THETA=0.0004;AC=2102;AN=2184 GT:DS:GL:BD 0.96245420 1 1 57997252 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57997417 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7809;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57997434 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0097;AVGPOST=0.9987;RSQ=0.9490;ERATE=0.0003;THETA=0.0009;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 57997548 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0051;AVGPOST=0.9986;RSQ=0.8910;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 57997581 . CT C 142 PASS INDEL;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5420;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57997598 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5839;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57997915 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0066;AVGPOST=0.9987;RSQ=0.9212;ERATE=0.0003;THETA=0.0010;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 57997929 . A AG 20795 PASS INDEL;BAVGPOST=0.955;BRSQ=0.903;LDAF=0.6996;AVGPOST=0.9333;RSQ=0.8826;ERATE=0.0123;THETA=0.0006;AC=1554;AN=2184 GT:DS:GL:BD 0.71153843 1 1 57997931 . T TA 21427 PASS INDEL;BAVGPOST=0.955;BRSQ=0.903;LDAF=0.6931;AVGPOST=0.9161;RSQ=0.8566;ERATE=0.0176;THETA=0.0009;AC=1537;AN=2184 GT:DS:GL:BD 0.70375460 1 1 57997970 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0024;AVGPOST=0.9981;RSQ=0.6891;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 57997992 rs34963401 CTTCA C 57386 PASS INDEL;BAVGPOST=0.994;BRSQ=0.986;LDAF=0.7222;AVGPOST=0.9713;RSQ=0.9474;ERATE=0.0041;THETA=0.0025;AC=1594;AN=2184 GT:DS:GL:BD 0.72985345 1 1 57998076 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6651;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57998153 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0080;AVGPOST=0.9995;RSQ=0.9776;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 57998220 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.893;LDAF=0.0059;AVGPOST=0.9986;RSQ=0.8951;ERATE=0.0004;THETA=0.0010;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 57998278 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0132;AVGPOST=0.9985;RSQ=0.9681;ERATE=0.0004;THETA=0.0030;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 57998289 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7268;AVGPOST=0.9975;RSQ=0.9947;ERATE=0.0004;THETA=0.0004;AC=1587;AN=2184 GT:DS:GL:BD 0.72664833 1 1 57998485 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.581;LDAF=0.0032;AVGPOST=0.9984;RSQ=0.8044;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 57998570 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0128;AVGPOST=0.9996;RSQ=0.9881;ERATE=0.0003;THETA=0.0006;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 57998679 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57998740 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0044;AVGPOST=0.9990;RSQ=0.9054;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 57998942 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7000;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57999039 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0034;AVGPOST=0.9986;RSQ=0.8380;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57999084 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0022;AVGPOST=0.9966;RSQ=0.3768;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57999135 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.958;LDAF=0.7314;AVGPOST=0.9893;RSQ=0.9783;ERATE=0.0007;THETA=0.0005;AC=1590;AN=2184 GT:DS:GL:BD 0.72802198 1 1 57999170 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.692;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5210;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57999237 rs5774352 ATG A 21202 PASS INDEL;BAVGPOST=0.940;BRSQ=0.249;LDAF=0.9429;AVGPOST=0.9229;RSQ=0.4664;ERATE=0.0026;THETA=0.0005;AC=2097;AN=2184 GT:DS:GL:BD 0.96016484 1 1 57999268 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.654;LDAF=0.0028;AVGPOST=0.9953;RSQ=0.2724;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57999292 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4582;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 57999293 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0088;AVGPOST=0.9995;RSQ=0.9752;ERATE=0.0004;THETA=0.0009;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 57999320 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57999357 . AAT A 260 PASS INDEL;BAVGPOST=0.910;BRSQ=0.305;LDAF=0.0783;AVGPOST=0.8949;RSQ=0.4343;ERATE=0.0068;THETA=0.0004;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 57999367 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0035;AVGPOST=0.9986;RSQ=0.8363;ERATE=0.0004;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 57999378 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0140;AVGPOST=0.9976;RSQ=0.9358;ERATE=0.0006;THETA=0.0009;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 57999441 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0014;AVGPOST=0.9986;RSQ=0.5788;ERATE=0.0005;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 57999458 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.947;LDAF=0.0102;AVGPOST=0.9968;RSQ=0.8820;ERATE=0.0005;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 57999534 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0119;AVGPOST=0.9992;RSQ=0.9755;ERATE=0.0003;THETA=0.0011;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 57999593 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0125;AVGPOST=0.9979;RSQ=0.9509;ERATE=0.0004;THETA=0.0050;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 57999771 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0039;AVGPOST=0.9984;RSQ=0.8148;ERATE=0.0005;THETA=0.0039;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 57999954 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0024;AVGPOST=0.9994;RSQ=0.8850;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58000005 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0010;AVGPOST=0.9985;RSQ=0.5038;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58000161 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.848;LDAF=0.0096;AVGPOST=0.9974;RSQ=0.8898;ERATE=0.0003;THETA=0.0013;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58000230 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58000257 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0118;AVGPOST=0.9994;RSQ=0.9825;ERATE=0.0003;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58000258 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58000274 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0092;AVGPOST=0.9998;RSQ=0.9880;ERATE=0.0003;THETA=0.0007;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58000283 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.995;LDAF=0.2438;AVGPOST=0.9965;RSQ=0.9928;ERATE=0.0006;THETA=0.0028;AC=533;AN=2184 GT:DS:GL:BD 0.24404761 0 1 58000287 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5704;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58000333 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.995;LDAF=0.3204;AVGPOST=0.9973;RSQ=0.9953;ERATE=0.0004;THETA=0.0008;AC=702;AN=2184 GT:DS:GL:BD 0.32142857 0 1 58000338 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5437;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58000356 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.996;LDAF=0.3239;AVGPOST=0.9985;RSQ=0.9972;ERATE=0.0003;THETA=0.0007;AC=709;AN=2184 GT:DS:GL:BD 0.32463369 0 1 58000454 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0117;AVGPOST=0.9995;RSQ=0.9873;ERATE=0.0003;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58000483 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6495;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58000484 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58000497 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0112;AVGPOST=0.9989;RSQ=0.9590;ERATE=0.0004;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58000552 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3233;AVGPOST=0.9992;RSQ=0.9985;ERATE=0.0003;THETA=0.0005;AC=707;AN=2184 GT:DS:GL:BD 0.32371795 0 1 58000628 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9766;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58000659 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58000669 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7089;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58000699 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6889;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58000711 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2428;AVGPOST=0.9993;RSQ=0.9985;ERATE=0.0003;THETA=0.0006;AC=531;AN=2184 GT:DS:GL:BD 0.24313186 0 1 58001022 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.4029;AVGPOST=0.9968;RSQ=0.9949;ERATE=0.0005;THETA=0.0004;AC=879;AN=2184 GT:DS:GL:BD 0.40247253 0 1 58001056 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.724;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5640;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58001150 . T TG 34 PASS INDEL;BAVGPOST=0.999;BRSQ=0.723;LDAF=0.0020;AVGPOST=0.9978;RSQ=0.5563;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58001219 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.704;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7456;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58001282 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.710;LDAF=0.0026;AVGPOST=0.9980;RSQ=0.6849;ERATE=0.0006;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58001292 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0081;AVGPOST=0.9972;RSQ=0.8737;ERATE=0.0005;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58001452 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6369;ERATE=0.0006;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58001458 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6530;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58001492 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7063;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58001613 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.820;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7752;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58001632 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9317;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58001829 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0062;AVGPOST=0.9980;RSQ=0.8807;ERATE=0.0004;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58001887 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7074;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58001956 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.9857;AVGPOST=0.9990;RSQ=0.9714;ERATE=0.0003;THETA=0.0005;AC=2153;AN=2184 GT:DS:GL:BD 0.98580587 1 1 58001991 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0069;AVGPOST=0.9996;RSQ=0.9736;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58002004 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6042;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58002029 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0068;AVGPOST=0.9998;RSQ=0.9858;ERATE=0.0003;THETA=0.0016;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58002083 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.734;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58002088 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6136;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58002149 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0032;AVGPOST=0.9997;RSQ=0.9597;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58002275 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0023;AVGPOST=0.9992;RSQ=0.8413;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58002290 . A AT 73 PASS INDEL;BAVGPOST=0.945;BRSQ=0.253;LDAF=0.0457;AVGPOST=0.9344;RSQ=0.4236;ERATE=0.0023;THETA=0.0007;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 58002407 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7708;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58002452 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.875;LDAF=0.0080;AVGPOST=0.9982;RSQ=0.9117;ERATE=0.0004;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58002468 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6873;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58002491 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.3203;AVGPOST=0.9975;RSQ=0.9959;ERATE=0.0004;THETA=0.0002;AC=699;AN=2184 GT:DS:GL:BD 0.32005495 0 1 58002508 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7461;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58002512 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.995;LDAF=0.4059;AVGPOST=0.9968;RSQ=0.9949;ERATE=0.0004;THETA=0.0005;AC=885;AN=2184 GT:DS:GL:BD 0.40521979 0 1 58002530 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.930;LDAF=0.1929;AVGPOST=0.9887;RSQ=0.9723;ERATE=0.0004;THETA=0.0007;AC=419;AN=2184 GT:DS:GL:BD 0.19184981 0 1 58002610 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.770;LDAF=0.0031;AVGPOST=0.9992;RSQ=0.8828;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58002634 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7684;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58002715 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8016;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58002884 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0038;AVGPOST=0.9967;RSQ=0.6846;ERATE=0.0017;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58002896 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.652;LDAF=0.0029;AVGPOST=0.9977;RSQ=0.7383;ERATE=0.0005;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58002956 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0061;AVGPOST=0.9970;RSQ=0.8157;ERATE=0.0004;THETA=0.0038;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58003035 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6249;AVGPOST=0.9992;RSQ=0.9988;ERATE=0.0003;THETA=0.0005;AC=1363;AN=2184 GT:DS:GL:BD 0.62408423 1 1 58003056 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8005;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58003131 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6365;AVGPOST=0.9992;RSQ=0.9987;ERATE=0.0004;THETA=0.0004;AC=1389;AN=2184 GT:DS:GL:BD 0.63598901 1 1 58003256 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0084;AVGPOST=0.9996;RSQ=0.9766;ERATE=0.0003;THETA=0.0008;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58003307 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0021;AVGPOST=0.9989;RSQ=0.7932;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58003319 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0057;AVGPOST=0.9996;RSQ=0.9693;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58003324 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6361;AVGPOST=0.9985;RSQ=0.9975;ERATE=0.0005;THETA=0.0006;AC=1389;AN=2184 GT:DS:GL:BD 0.63598901 1 1 58003409 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6368;AVGPOST=0.9988;RSQ=0.9980;ERATE=0.0004;THETA=0.0006;AC=1389;AN=2184 GT:DS:GL:BD 0.63598901 1 1 58003626 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9597;AVGPOST=0.9989;RSQ=0.9907;ERATE=0.0004;THETA=0.0005;AC=2096;AN=2184 GT:DS:GL:BD 0.95970696 1 1 58003644 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0051;AVGPOST=0.9987;RSQ=0.8877;ERATE=0.0011;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58003712 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6472;AVGPOST=0.9986;RSQ=0.9980;ERATE=0.0003;THETA=0.0003;AC=1412;AN=2184 GT:DS:GL:BD 0.64652014 1 1 58003741 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6398;AVGPOST=0.9979;RSQ=0.9967;ERATE=0.0006;THETA=0.0002;AC=1397;AN=2184 GT:DS:GL:BD 0.63965201 1 1 58003748 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0039;AVGPOST=0.9989;RSQ=0.9199;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58003761 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0120;AVGPOST=0.9997;RSQ=0.9898;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58003773 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0035;AVGPOST=0.9996;RSQ=0.9641;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58003804 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6402;AVGPOST=0.9991;RSQ=0.9987;ERATE=0.0004;THETA=0.0069;AC=1397;AN=2184 GT:DS:GL:BD 0.63965201 1 1 58003880 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7496;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58003979 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0093;AVGPOST=0.9997;RSQ=0.9834;ERATE=0.0003;THETA=0.0008;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58004009 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9561;AVGPOST=0.9967;RSQ=0.9765;ERATE=0.0003;THETA=0.0004;AC=2089;AN=2184 GT:DS:GL:BD 0.95650184 1 1 58004076 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9936;ERATE=0.0003;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58004164 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58004200 . TG T 84 PASS INDEL;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.5137;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58004204 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58004205 . GT G 799 PASS INDEL;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0091;AVGPOST=0.9972;RSQ=0.8764;ERATE=0.0006;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58004250 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58004286 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0042;AVGPOST=0.9997;RSQ=0.9713;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58004467 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58004484 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2410;AVGPOST=0.9987;RSQ=0.9967;ERATE=0.0005;THETA=0.0005;AC=527;AN=2184 GT:DS:GL:BD 0.24130036 0 1 58004491 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6057;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58004529 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58004596 . G GC 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6461;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58004681 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8840;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58004745 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.9520;AVGPOST=0.9996;RSQ=0.9968;ERATE=0.0003;THETA=0.0005;AC=2079;AN=2184 GT:DS:GL:BD 0.95192307 1 1 58004793 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9594;AVGPOST=0.9993;RSQ=0.9942;ERATE=0.0003;THETA=0.0008;AC=2095;AN=2184 GT:DS:GL:BD 0.95924908 1 1 58005019 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0119;AVGPOST=0.9992;RSQ=0.9756;ERATE=0.0004;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 58005031 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.5924;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58005163 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58005178 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2423;AVGPOST=0.9982;RSQ=0.9957;ERATE=0.0005;THETA=0.0005;AC=530;AN=2184 GT:DS:GL:BD 0.24267399 0 1 58005229 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58005289 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0075;AVGPOST=0.9996;RSQ=0.9806;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58005308 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.9197;AVGPOST=0.9993;RSQ=0.9969;ERATE=0.0004;THETA=0.0010;AC=2009;AN=2184 GT:DS:GL:BD 0.91987181 1 1 58005316 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0450;AVGPOST=0.9984;RSQ=0.9872;ERATE=0.0003;THETA=0.0003;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 58005413 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58005426 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58005515 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.9213;AVGPOST=0.9997;RSQ=0.9986;ERATE=0.0003;THETA=0.0002;AC=2012;AN=2184 GT:DS:GL:BD 0.92124540 1 1 58005550 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0080;AVGPOST=0.9990;RSQ=0.9532;ERATE=0.0004;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58005628 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9201;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58005685 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.823;LDAF=0.0022;AVGPOST=0.9990;RSQ=0.7855;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58005718 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.923;LDAF=0.9555;AVGPOST=0.9913;RSQ=0.9351;ERATE=0.0005;THETA=0.0006;AC=2091;AN=2184 GT:DS:GL:BD 0.95741761 1 1 58005831 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.9387;AVGPOST=0.9996;RSQ=0.9975;ERATE=0.0003;THETA=0.0018;AC=2050;AN=2184 GT:DS:GL:BD 0.93864471 1 1 58005860 . G GA 129 PASS INDEL;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58005913 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58005931 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0338;AVGPOST=0.9984;RSQ=0.9834;ERATE=0.0003;THETA=0.0008;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 58006000 . ACT A 1662 PASS INDEL;BAVGPOST=0.997;BRSQ=0.865;LDAF=0.0095;AVGPOST=0.9948;RSQ=0.7926;ERATE=0.0005;THETA=0.0059;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58006292 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.4770;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58006318 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.9425;AVGPOST=0.9988;RSQ=0.9933;ERATE=0.0004;THETA=0.0050;AC=2059;AN=2184 GT:DS:GL:BD 0.94276559 1 1 58006517 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0178;AVGPOST=1.0000;RSQ=0.9989;ERATE=0.0003;THETA=0.0007;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 58006552 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.969;LDAF=0.0261;AVGPOST=0.9958;RSQ=0.9496;ERATE=0.0003;THETA=0.0013;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 58006649 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9443;AVGPOST=0.9988;RSQ=0.9911;ERATE=0.0005;THETA=0.0013;AC=2063;AN=2184 GT:DS:GL:BD 0.94459707 1 1 58006699 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9121;AVGPOST=0.9994;RSQ=0.9973;ERATE=0.0003;THETA=0.0007;AC=1992;AN=2184 GT:DS:GL:BD 0.91208792 1 1 58006840 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.918;BRSQ=0.634;LDAF=0.8441;AVGPOST=0.8431;RSQ=0.5497;ERATE=0.0220;THETA=0.0004;AC=1961;AN=2184 GT:DS:GL:BD 0.89789379 1 1 58006957 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0083;AVGPOST=0.9956;RSQ=0.7755;ERATE=0.0007;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58006995 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.485;LDAF=0.0056;AVGPOST=0.9915;RSQ=0.3678;ERATE=0.0011;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58007205 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7222;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58007241 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0045;AVGPOST=0.9980;RSQ=0.8155;ERATE=0.0008;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58007387 . G GA 26 PASS INDEL;BAVGPOST=0.996;BRSQ=0.467;LDAF=0.0147;AVGPOST=0.9807;RSQ=0.5314;ERATE=0.0022;THETA=0.0010;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58007388 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.731;LDAF=0.0031;AVGPOST=0.9956;RSQ=0.4868;ERATE=0.0007;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58007579 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.698;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4335;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58007773 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.895;LDAF=0.0188;AVGPOST=0.9968;RSQ=0.9344;ERATE=0.0005;THETA=0.0007;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 58007864 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6546;ERATE=0.0005;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58008005 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7164;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58008045 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0074;AVGPOST=0.9982;RSQ=0.9151;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58008165 . T TG 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4409;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58008286 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6249;AVGPOST=0.9984;RSQ=0.9978;ERATE=0.0004;THETA=0.0003;AC=1363;AN=2184 GT:DS:GL:BD 0.62408423 1 1 58008348 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58008397 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0036;AVGPOST=0.9991;RSQ=0.9014;ERATE=0.0006;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58008399 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5530;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58008408 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58008475 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8005;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58008548 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58008577 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9998;RSQ=0.9819;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58008581 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6942;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58008699 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58008860 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58008863 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0059;AVGPOST=0.9990;RSQ=0.9286;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58009014 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58009249 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3053;AVGPOST=0.9978;RSQ=0.9957;ERATE=0.0007;THETA=0.0006;AC=668;AN=2184 GT:DS:GL:BD 0.30586082 0 1 58009305 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0230;AVGPOST=0.9961;RSQ=0.9422;ERATE=0.0006;THETA=0.0005;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 58009394 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58009454 rs34197085 G GA 115051 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.9601;AVGPOST=0.9987;RSQ=0.9877;ERATE=0.0003;THETA=0.0006;AC=2098;AN=2184 GT:DS:GL:BD 0.96062273 1 1 58009539 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7033;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58009588 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.590;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5119;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58009608 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.820;LDAF=0.0036;AVGPOST=0.9990;RSQ=0.8749;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58009636 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.689;LDAF=0.0067;AVGPOST=0.9967;RSQ=0.8212;ERATE=0.0004;THETA=0.0013;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58009637 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0056;AVGPOST=0.9996;RSQ=0.9650;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58009756 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.9411;AVGPOST=0.9981;RSQ=0.9873;ERATE=0.0006;THETA=0.0006;AC=2057;AN=2184 GT:DS:GL:BD 0.94184983 1 1 58009796 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0061;AVGPOST=0.9998;RSQ=0.9820;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58009813 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58009908 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7674;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58009988 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7948;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58010108 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8400;ERATE=0.0013;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58010129 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0117;AVGPOST=0.9995;RSQ=0.9856;ERATE=0.0003;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58010173 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9419;AVGPOST=0.9998;RSQ=0.9984;ERATE=0.0003;THETA=0.0006;AC=2057;AN=2184 GT:DS:GL:BD 0.94184983 1 1 58010224 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58010227 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.9297;AVGPOST=0.9983;RSQ=0.9912;ERATE=0.0005;THETA=0.0005;AC=2032;AN=2184 GT:DS:GL:BD 0.93040293 1 1 58010275 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4078;AVGPOST=0.9956;RSQ=0.9932;ERATE=0.0006;THETA=0.0007;AC=889;AN=2184 GT:DS:GL:BD 0.40705130 0 1 58010322 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.752;LDAF=0.0026;AVGPOST=0.9989;RSQ=0.8113;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58010355 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6057;ERATE=0.0005;THETA=0.0051;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58010525 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4044;AVGPOST=0.9978;RSQ=0.9966;ERATE=0.0005;THETA=0.0003;AC=882;AN=2184 GT:DS:GL:BD 0.40384614 0 1 58010526 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58010557 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8951;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58010593 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0081;AVGPOST=0.9979;RSQ=0.9099;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58010626 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9415;AVGPOST=0.9987;RSQ=0.9924;ERATE=0.0003;THETA=0.0004;AC=2057;AN=2184 GT:DS:GL:BD 0.94184983 1 1 58010903 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0056;AVGPOST=0.9980;RSQ=0.8520;ERATE=0.0004;THETA=0.0013;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58011079 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6007;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58011103 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.6208;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58011122 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58011141 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58011433 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0120;AVGPOST=0.9979;RSQ=0.9266;ERATE=0.0004;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 58011516 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58011527 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9308;AVGPOST=0.9985;RSQ=0.9934;ERATE=0.0004;THETA=0.0004;AC=2034;AN=2184 GT:DS:GL:BD 0.93131870 1 1 58011531 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0332;AVGPOST=0.9986;RSQ=0.9850;ERATE=0.0003;THETA=0.0046;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 58011551 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5234;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58011706 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.727;LDAF=0.0079;AVGPOST=0.9966;RSQ=0.8119;ERATE=0.0013;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58011770 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.895;BRSQ=0.813;LDAF=0.5364;AVGPOST=0.8634;RSQ=0.7929;ERATE=0.0615;THETA=0.0007;AC=1188;AN=2184 GT:DS:GL:BD 0.54395604 1 1 58011777 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.865;LDAF=0.8617;AVGPOST=0.9465;RSQ=0.8389;ERATE=0.0101;THETA=0.0007;AC=1915;AN=2184 GT:DS:GL:BD 0.87683153 1 1 58011831 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9605;AVGPOST=0.9995;RSQ=0.9960;ERATE=0.0003;THETA=0.0007;AC=2098;AN=2184 GT:DS:GL:BD 0.96062273 1 1 58011854 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58012113 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0032;AVGPOST=0.9998;RSQ=0.9727;ERATE=0.0004;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58012127 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9426;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58012223 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.780;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8687;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58012330 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5214;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58012331 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6249;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58012409 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7140;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58012452 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.737;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7530;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58012541 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5582;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58012616 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9294;AVGPOST=0.9974;RSQ=0.9876;ERATE=0.0005;THETA=0.0005;AC=2031;AN=2184 GT:DS:GL:BD 0.92994505 1 1 58012653 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0032;AVGPOST=0.9971;RSQ=0.6142;ERATE=0.0016;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58012662 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0053;AVGPOST=0.9989;RSQ=0.9066;ERATE=0.0005;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58012725 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7919;ERATE=0.0003;THETA=0.0019;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58012833 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7219;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58012857 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6469;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58013012 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0061;AVGPOST=0.9995;RSQ=0.9618;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58013036 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.633;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.5408;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58013090 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0030;AVGPOST=0.9993;RSQ=0.8944;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58013246 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.736;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58013274 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6660;AVGPOST=0.9983;RSQ=0.9972;ERATE=0.0004;THETA=0.0004;AC=1454;AN=2184 GT:DS:GL:BD 0.66575092 1 1 58013329 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6129;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58013432 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7359;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58013544 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.7187;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58013667 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0054;AVGPOST=0.9941;RSQ=0.5800;ERATE=0.0020;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58013688 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0031;AVGPOST=0.9991;RSQ=0.8762;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58013724 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.516;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58013774 . CTCTG C 1050 PASS INDEL;BAVGPOST=0.994;BRSQ=0.720;LDAF=0.0133;AVGPOST=0.9908;RSQ=0.7227;ERATE=0.0009;THETA=0.0002;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58013833 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8567;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58013834 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7939;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58014042 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7985;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58014124 rs57221331 G GT 93 PASS INDEL;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0028;AVGPOST=0.9980;RSQ=0.6917;ERATE=0.0004;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58014136 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.6669;AVGPOST=0.9961;RSQ=0.9939;ERATE=0.0005;THETA=0.0005;AC=1452;AN=2184 GT:DS:GL:BD 0.66483516 1 1 58014244 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8772;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58014406 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58014466 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58014500 . CTAACAT C 761 PASS INDEL;BAVGPOST=0.998;BRSQ=0.667;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8359;ERATE=0.0006;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58014526 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58014671 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8223;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58014768 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0117;AVGPOST=0.9994;RSQ=0.9782;ERATE=0.0004;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 58014971 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6947;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58015018 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.8974;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58015089 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7385;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58015270 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5356;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58015312 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2456;AVGPOST=0.9988;RSQ=0.9972;ERATE=0.0004;THETA=0.0004;AC=538;AN=2184 GT:DS:GL:BD 0.24633700 0 1 58015361 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.6220;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58015430 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0004;AVGPOST=0.9995;RSQ=0.4829;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58015469 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0016;AVGPOST=0.9981;RSQ=0.5328;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58015593 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58015602 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7344;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58015724 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0142;AVGPOST=1.0000;RSQ=0.9985;ERATE=0.0003;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 58016072 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.8941;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58016086 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.6086;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58016263 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4047;AVGPOST=0.9988;RSQ=0.9982;ERATE=0.0003;THETA=0.0006;AC=882;AN=2184 GT:DS:GL:BD 0.40384614 0 1 58016444 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.757;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58016554 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8952;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58016573 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6225;AVGPOST=0.9989;RSQ=0.9983;ERATE=0.0004;THETA=0.0006;AC=1358;AN=2184 GT:DS:GL:BD 0.62179488 1 1 58016578 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9598;AVGPOST=0.9985;RSQ=0.9881;ERATE=0.0003;THETA=0.0009;AC=2096;AN=2184 GT:DS:GL:BD 0.95970696 1 1 58016639 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9244;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58016652 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0143;AVGPOST=0.9997;RSQ=0.9898;ERATE=0.0003;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 58016804 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0385;AVGPOST=0.9995;RSQ=0.9945;ERATE=0.0003;THETA=0.0007;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 58016825 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7280;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58016862 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0145;AVGPOST=0.9993;RSQ=0.9806;ERATE=0.0003;THETA=0.0002;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 58016884 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0023;AVGPOST=0.9973;RSQ=0.5682;ERATE=0.0008;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58016924 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.933;LDAF=0.0192;AVGPOST=0.9958;RSQ=0.9234;ERATE=0.0005;THETA=0.0005;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 58016932 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6889;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58016933 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6580;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58017064 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5433;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58017074 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.9300;AVGPOST=0.9996;RSQ=0.9978;ERATE=0.0003;THETA=0.0002;AC=2031;AN=2184 GT:DS:GL:BD 0.92994505 1 1 58017090 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2513;AVGPOST=0.9991;RSQ=0.9980;ERATE=0.0003;THETA=0.0002;AC=550;AN=2184 GT:DS:GL:BD 0.25183150 0 1 58017228 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7494;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58017308 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0023;AVGPOST=0.9982;RSQ=0.6951;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58017342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.743;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4728;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58017387 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9450;AVGPOST=0.9990;RSQ=0.9924;ERATE=0.0004;THETA=0.0012;AC=2064;AN=2184 GT:DS:GL:BD 0.94505495 1 1 58017517 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0062;AVGPOST=0.9984;RSQ=0.9021;ERATE=0.0004;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58017595 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58017634 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58017635 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6077;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58017647 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58017701 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6218;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58017728 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6277;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58017742 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6127;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58017806 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6589;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58017841 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.704;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7575;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58017917 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.651;LDAF=0.0229;AVGPOST=0.9789;RSQ=0.6547;ERATE=0.0048;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 58017939 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58018044 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7230;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58018077 . A AG 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5746;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58018103 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6231;AVGPOST=0.9971;RSQ=0.9961;ERATE=0.0003;THETA=0.0006;AC=1358;AN=2184 GT:DS:GL:BD 0.62179488 1 1 58018177 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9077;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58018187 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0028;AVGPOST=0.9985;RSQ=0.8115;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58018246 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0019;AVGPOST=0.9994;RSQ=0.8530;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58018266 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.615;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8355;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58018456 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0110;AVGPOST=0.9999;RSQ=0.9942;ERATE=0.0003;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58018492 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6494;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58018575 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6527;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58018578 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5835;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58018588 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0111;AVGPOST=0.9997;RSQ=0.9882;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58018645 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58018688 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58018790 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0082;AVGPOST=0.9990;RSQ=0.9616;ERATE=0.0003;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58018888 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8810;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58018949 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6342;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58019040 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0118;AVGPOST=0.9980;RSQ=0.9256;ERATE=0.0005;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58019054 . A AAG 38243 PASS INDEL;BAVGPOST=0.910;BRSQ=0.572;LDAF=0.8358;AVGPOST=0.8277;RSQ=0.5013;ERATE=0.0295;THETA=0.0007;AC=1972;AN=2184 GT:DS:GL:BD 0.90293038 1 1 58019082 . G GAA 4711 PASS INDEL;BAVGPOST=0.693;BRSQ=0.477;LDAF=0.4100;AVGPOST=0.7282;RSQ=0.5519;ERATE=0.0184;THETA=0.0005;AC=853;AN=2184 GT:DS:GL:BD 0.39056778 0 1 58019088 . AAG A 4130 PASS INDEL;BAVGPOST=0.698;BRSQ=0.489;LDAF=0.4022;AVGPOST=0.7232;RSQ=0.5451;ERATE=0.0173;THETA=0.0003;AC=843;AN=2184 GT:DS:GL:BD 0.38598901 0 1 58019106 . GAA G 869 PASS INDEL;BAVGPOST=0.932;BRSQ=0.517;LDAF=0.1343;AVGPOST=0.8543;RSQ=0.5033;ERATE=0.0123;THETA=0.0004;AC=182;AN=2184 GT:DS:GL:BD 0.08333334 0 1 58019112 . AAG A 14816 PASS INDEL;BAVGPOST=0.857;BRSQ=0.174;LDAF=0.8335;AVGPOST=0.7763;RSQ=0.3368;ERATE=0.0213;THETA=0.0010;AC=1977;AN=2184 GT:DS:GL:BD 0.90521979 1 1 58019177 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.871;BRSQ=0.644;LDAF=0.7224;AVGPOST=0.8505;RSQ=0.6587;ERATE=0.0752;THETA=0.0010;AC=1643;AN=2184 GT:DS:GL:BD 0.75228935 1 1 58019210 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8915;AVGPOST=0.9985;RSQ=0.9942;ERATE=0.0003;THETA=0.0004;AC=1948;AN=2184 GT:DS:GL:BD 0.89194137 1 1 58019439 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0083;AVGPOST=0.9999;RSQ=0.9952;ERATE=0.0003;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58019615 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0020;AVGPOST=0.9983;RSQ=0.6509;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58019628 . GAGAACACC G 2202 PASS INDEL;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0092;AVGPOST=0.9975;RSQ=0.8937;ERATE=0.0004;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58019680 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6635;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58019718 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0052;AVGPOST=0.9991;RSQ=0.9262;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58019733 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2180;AVGPOST=0.9980;RSQ=0.9953;ERATE=0.0003;THETA=0.0006;AC=477;AN=2184 GT:DS:GL:BD 0.21840659 0 1 58019754 . AG A 192 PASS INDEL;BAVGPOST=0.989;BRSQ=0.672;LDAF=0.0200;AVGPOST=0.9847;RSQ=0.7227;ERATE=0.0007;THETA=0.0002;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 58019755 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0618;AVGPOST=0.9966;RSQ=0.9801;ERATE=0.0006;THETA=0.0006;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 58019775 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6259;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58019865 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58019879 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.955;LDAF=0.0226;AVGPOST=0.9962;RSQ=0.9348;ERATE=0.0004;THETA=0.0006;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 58019881 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6193;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58019901 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9746;ERATE=0.0005;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58019962 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8640;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58019994 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5980;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58020035 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8879;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58020094 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0681;AVGPOST=0.9995;RSQ=0.9972;ERATE=0.0003;THETA=0.0006;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 58020106 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0082;AVGPOST=0.9995;RSQ=0.9695;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58020112 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0073;AVGPOST=0.9970;RSQ=0.8605;ERATE=0.0004;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58020177 rs5774357 TAC T 6598 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0402;AVGPOST=0.9979;RSQ=0.9813;ERATE=0.0004;THETA=0.0003;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 58020410 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.682;LDAF=0.0034;AVGPOST=0.9972;RSQ=0.6694;ERATE=0.0008;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58020423 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0192;AVGPOST=0.9994;RSQ=0.9858;ERATE=0.0003;THETA=0.0010;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 58020534 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0032;AVGPOST=0.9977;RSQ=0.7213;ERATE=0.0005;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58020640 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.626;LDAF=0.0034;AVGPOST=0.9975;RSQ=0.7327;ERATE=0.0006;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58020687 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.912;LDAF=0.0094;AVGPOST=0.9971;RSQ=0.8787;ERATE=0.0004;THETA=0.0009;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58020731 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.4652;ERATE=0.0006;THETA=0.0028;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58020764 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.976;LDAF=0.6486;AVGPOST=0.9894;RSQ=0.9826;ERATE=0.0010;THETA=0.0004;AC=1420;AN=2184 GT:DS:GL:BD 0.65018314 1 1 58020832 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.957;BRSQ=0.739;LDAF=0.9019;AVGPOST=0.9256;RSQ=0.7019;ERATE=0.0085;THETA=0.0006;AC=2012;AN=2184 GT:DS:GL:BD 0.92124540 1 1 58020870 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.757;LDAF=0.9351;AVGPOST=0.9684;RSQ=0.8085;ERATE=0.0036;THETA=0.0006;AC=2060;AN=2184 GT:DS:GL:BD 0.94322342 1 1 58020921 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.699;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.5407;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58020980 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6343;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58021142 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2187;AVGPOST=0.9977;RSQ=0.9950;ERATE=0.0004;THETA=0.0004;AC=478;AN=2184 GT:DS:GL:BD 0.21886447 0 1 58021162 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0018;AVGPOST=0.9996;RSQ=0.9074;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58021195 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58021206 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4051;AVGPOST=0.9958;RSQ=0.9939;ERATE=0.0004;THETA=0.0061;AC=883;AN=2184 GT:DS:GL:BD 0.40430403 0 1 58021505 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.771;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7908;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58021612 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6542;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58021673 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0052;AVGPOST=0.9993;RSQ=0.9406;ERATE=0.0003;THETA=0.0033;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58021717 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7530;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58021743 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.856;LDAF=0.0115;AVGPOST=0.9985;RSQ=0.9427;ERATE=0.0003;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 58021816 . TATAC T 109 PASS INDEL;BAVGPOST=0.999;BRSQ=0.684;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7774;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58021821 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0162;AVGPOST=0.9951;RSQ=0.8812;ERATE=0.0005;THETA=0.0005;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58021836 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4100;AVGPOST=0.9965;RSQ=0.9950;ERATE=0.0004;THETA=0.0008;AC=894;AN=2184 GT:DS:GL:BD 0.40934065 0 1 58021882 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.9677;AVGPOST=0.9990;RSQ=0.9875;ERATE=0.0004;THETA=0.0006;AC=2114;AN=2184 GT:DS:GL:BD 0.96794873 1 1 58021931 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2216;AVGPOST=0.9949;RSQ=0.9892;ERATE=0.0007;THETA=0.0004;AC=484;AN=2184 GT:DS:GL:BD 0.22161172 0 1 58021932 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5749;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58021936 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58021959 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6392;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58022073 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5037;AVGPOST=0.9955;RSQ=0.9928;ERATE=0.0008;THETA=0.0009;AC=1101;AN=2184 GT:DS:GL:BD 0.50412089 1 1 58022104 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58022157 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9509;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58022250 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0085;AVGPOST=0.9990;RSQ=0.9450;ERATE=0.0003;THETA=0.0010;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58022309 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.7082;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58022340 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0020;AVGPOST=0.9971;RSQ=0.4501;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58022606 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4556;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58022631 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0050;AVGPOST=0.9985;RSQ=0.8875;ERATE=0.0004;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58022641 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58022826 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6182;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58022869 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0570;AVGPOST=0.9977;RSQ=0.9871;ERATE=0.0004;THETA=0.0004;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 58022891 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.9596;AVGPOST=0.9984;RSQ=0.9837;ERATE=0.0004;THETA=0.0007;AC=2097;AN=2184 GT:DS:GL:BD 0.96016484 1 1 58022996 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.954;LDAF=0.0223;AVGPOST=0.9963;RSQ=0.9349;ERATE=0.0003;THETA=0.0005;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 58023095 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9320;ERATE=0.0003;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58023368 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.753;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5657;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58023408 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7117;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58023409 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.854;LDAF=0.0113;AVGPOST=0.9974;RSQ=0.9069;ERATE=0.0006;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58023417 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6945;ERATE=0.0003;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58023444 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58023523 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.725;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7368;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58023547 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.975;LDAF=0.9584;AVGPOST=0.9967;RSQ=0.9676;ERATE=0.0007;THETA=0.0009;AC=2096;AN=2184 GT:DS:GL:BD 0.95970696 1 1 58023561 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8879;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58023700 rs79306522 G GTTGC 123436 PASS INDEL;BAVGPOST=0.974;BRSQ=0.913;LDAF=0.8762;AVGPOST=0.9813;RSQ=0.9440;ERATE=0.0005;THETA=0.0004;AC=1923;AN=2184 GT:DS:GL:BD 0.88049453 1 1 58023701 rs35921393 T TTGCG 46066 PASS INDEL;BAVGPOST=0.941;BRSQ=0.827;LDAF=0.8367;AVGPOST=0.9547;RSQ=0.8897;ERATE=0.0007;THETA=0.0006;AC=1843;AN=2184 GT:DS:GL:BD 0.84386444 1 1 58023703 . G GCTTT 83320 PASS INDEL;BAVGPOST=0.923;BRSQ=0.794;LDAF=0.7575;AVGPOST=0.8750;RSQ=0.7405;ERATE=0.0464;THETA=0.0003;AC=1717;AN=2184 GT:DS:GL:BD 0.78617215 1 1 58023869 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0095;AVGPOST=0.9992;RSQ=0.9615;ERATE=0.0005;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58023912 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.604;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6737;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58024122 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0025;AVGPOST=0.9990;RSQ=0.8282;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58024131 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58024370 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7208;ERATE=0.0004;THETA=0.0037;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58024396 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2182;AVGPOST=0.9958;RSQ=0.9904;ERATE=0.0007;THETA=0.0009;AC=477;AN=2184 GT:DS:GL:BD 0.21840659 0 1 58024500 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6057;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58024634 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0120;AVGPOST=0.9984;RSQ=0.9505;ERATE=0.0003;THETA=0.0008;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58024658 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5598;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58024679 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.8916;AVGPOST=0.9988;RSQ=0.9949;ERATE=0.0006;THETA=0.0005;AC=1948;AN=2184 GT:DS:GL:BD 0.89194137 1 1 58024709 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6599;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58024914 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.8916;AVGPOST=0.9987;RSQ=0.9951;ERATE=0.0004;THETA=0.0009;AC=1948;AN=2184 GT:DS:GL:BD 0.89194137 1 1 58025003 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0062;AVGPOST=0.9993;RSQ=0.9460;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58025045 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0031;AVGPOST=0.9981;RSQ=0.7144;ERATE=0.0006;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58025078 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.720;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7033;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58025114 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9879;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58025118 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58025154 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0086;AVGPOST=0.9982;RSQ=0.9136;ERATE=0.0004;THETA=0.0009;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58025169 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0183;AVGPOST=0.9996;RSQ=0.9903;ERATE=0.0003;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 58025199 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58025200 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0124;AVGPOST=0.9977;RSQ=0.9297;ERATE=0.0004;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58025292 . GT G 165 PASS INDEL;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0021;AVGPOST=0.9977;RSQ=0.5748;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58025373 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9986;AVGPOST=0.9986;RSQ=0.5630;ERATE=0.0003;THETA=0.0005;AC=2182;AN=2184 GT:DS:GL:BD 0.99908423 1 1 58025507 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8005;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58025529 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.0389;AVGPOST=0.9989;RSQ=0.9910;ERATE=0.0003;THETA=0.0004;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 58025539 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0090;AVGPOST=0.9994;RSQ=0.9664;ERATE=0.0005;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58025670 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58025693 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0470;AVGPOST=0.9992;RSQ=0.9933;ERATE=0.0004;THETA=0.0013;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 58025851 . A AAT 256 PASS INDEL;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0017;AVGPOST=0.9995;RSQ=0.8944;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58025885 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58025893 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.863;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8369;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58025958 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0080;AVGPOST=0.9986;RSQ=0.9408;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58026089 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.773;LDAF=0.0064;AVGPOST=0.9956;RSQ=0.7560;ERATE=0.0014;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58026291 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.9601;AVGPOST=0.9998;RSQ=0.9975;ERATE=0.0003;THETA=0.0006;AC=2097;AN=2184 GT:DS:GL:BD 0.96016484 1 1 58026306 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58026348 rs111527044 GGCTGCTGTGCAA G 29614 PASS INDEL;BAVGPOST=0.984;BRSQ=0.956;LDAF=0.2038;AVGPOST=0.9848;RSQ=0.9630;ERATE=0.0016;THETA=0.0009;AC=451;AN=2184 GT:DS:GL:BD 0.20650183 0 1 58026417 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.4372;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58026453 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.8912;AVGPOST=0.9976;RSQ=0.9911;ERATE=0.0005;THETA=0.0005;AC=1948;AN=2184 GT:DS:GL:BD 0.89194137 1 1 58026482 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.475;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4599;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58026603 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9997;RSQ=0.9781;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58026610 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0005;AVGPOST=0.9989;RSQ=0.2075;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 58026700 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6343;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58026701 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9473;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58026727 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.943;LDAF=0.0154;AVGPOST=0.9976;RSQ=0.9392;ERATE=0.0003;THETA=0.0020;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58026728 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0033;AVGPOST=0.9956;RSQ=0.5442;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58026783 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.669;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7333;ERATE=0.0004;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58026796 . GC G 36 PASS INDEL;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5073;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58026815 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0215;AVGPOST=0.9998;RSQ=0.9953;ERATE=0.0003;THETA=0.0005;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 58026827 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0390;AVGPOST=0.9987;RSQ=0.9865;ERATE=0.0004;THETA=0.0009;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 58026852 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0020;AVGPOST=0.9993;RSQ=0.8311;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58026859 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0065;AVGPOST=0.9988;RSQ=0.9258;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58026908 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0182;AVGPOST=0.9998;RSQ=0.9945;ERATE=0.0003;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 58026910 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2441;AVGPOST=0.9974;RSQ=0.9941;ERATE=0.0005;THETA=0.0005;AC=535;AN=2184 GT:DS:GL:BD 0.24496336 0 1 58026929 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0004;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58026967 . TC T 224 PASS INDEL;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0026;AVGPOST=0.9978;RSQ=0.7023;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58027035 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0388;AVGPOST=0.9991;RSQ=0.9903;ERATE=0.0003;THETA=0.0004;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 58027069 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.653;LDAF=0.0016;AVGPOST=0.9980;RSQ=0.5600;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58027183 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7437;ERATE=0.0008;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58027243 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7466;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58027348 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.8902;AVGPOST=0.9968;RSQ=0.9896;ERATE=0.0004;THETA=0.0003;AC=1943;AN=2184 GT:DS:GL:BD 0.88965201 1 1 58027354 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.8901;AVGPOST=0.9973;RSQ=0.9910;ERATE=0.0004;THETA=0.0005;AC=1945;AN=2184 GT:DS:GL:BD 0.89056778 1 1 58027380 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.789;LDAF=0.9351;AVGPOST=0.9824;RSQ=0.8916;ERATE=0.0008;THETA=0.0003;AC=2049;AN=2184 GT:DS:GL:BD 0.93818682 1 1 58027493 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0030;AVGPOST=0.9993;RSQ=0.8936;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58027574 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8916;AVGPOST=0.9987;RSQ=0.9951;ERATE=0.0004;THETA=0.0005;AC=1948;AN=2184 GT:DS:GL:BD 0.89194137 1 1 58027631 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0023;AVGPOST=0.9997;RSQ=0.9448;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58027658 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9591;AVGPOST=0.9984;RSQ=0.9859;ERATE=0.0004;THETA=0.0006;AC=2095;AN=2184 GT:DS:GL:BD 0.95924908 1 1 58027715 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0077;AVGPOST=0.9992;RSQ=0.9625;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58027782 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0083;AVGPOST=0.9979;RSQ=0.8917;ERATE=0.0005;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58027879 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.764;LDAF=0.0078;AVGPOST=0.9957;RSQ=0.7858;ERATE=0.0004;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58027945 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0066;AVGPOST=0.9981;RSQ=0.8951;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58028086 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8914;AVGPOST=0.9984;RSQ=0.9935;ERATE=0.0004;THETA=0.0025;AC=1948;AN=2184 GT:DS:GL:BD 0.89194137 1 1 58028113 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2248;AVGPOST=0.9975;RSQ=0.9940;ERATE=0.0005;THETA=0.0004;AC=492;AN=2184 GT:DS:GL:BD 0.22527473 0 1 58028153 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0077;AVGPOST=0.9996;RSQ=0.9756;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58028259 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0108;AVGPOST=0.9980;RSQ=0.9282;ERATE=0.0004;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58028421 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5827;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58028458 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.5049;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58028463 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6899;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58028556 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.8923;AVGPOST=0.9983;RSQ=0.9932;ERATE=0.0005;THETA=0.0002;AC=1948;AN=2184 GT:DS:GL:BD 0.89194137 1 1 58028609 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0028;AVGPOST=0.9996;RSQ=0.9407;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58028610 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.769;LDAF=0.0032;AVGPOST=0.9980;RSQ=0.7719;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58028640 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.5304;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58028643 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.710;LDAF=0.0021;AVGPOST=0.9982;RSQ=0.6564;ERATE=0.0006;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58028650 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.813;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58028706 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.990;LDAF=0.3175;AVGPOST=0.9949;RSQ=0.9899;ERATE=0.0005;THETA=0.0004;AC=696;AN=2184 GT:DS:GL:BD 0.31868133 0 1 58028775 . C CA 90 PASS INDEL;BAVGPOST=0.990;BRSQ=0.594;LDAF=0.0268;AVGPOST=0.9683;RSQ=0.5323;ERATE=0.0072;THETA=0.0007;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 58028848 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6383;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58029069 . CT C 187 PASS INDEL;BAVGPOST=0.998;BRSQ=0.740;LDAF=0.0027;AVGPOST=0.9981;RSQ=0.7590;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58029095 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.920;LDAF=0.0182;AVGPOST=0.9977;RSQ=0.9462;ERATE=0.0004;THETA=0.0013;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 58029105 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.966;LDAF=0.2259;AVGPOST=0.9937;RSQ=0.9858;ERATE=0.0007;THETA=0.0004;AC=496;AN=2184 GT:DS:GL:BD 0.22710623 0 1 58029106 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4490;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58029149 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0190;AVGPOST=0.9986;RSQ=0.9677;ERATE=0.0005;THETA=0.0005;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 58029162 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.2566;AVGPOST=0.9950;RSQ=0.9890;ERATE=0.0006;THETA=0.0006;AC=560;AN=2184 GT:DS:GL:BD 0.25641027 0 1 58029257 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.895;LDAF=0.1838;AVGPOST=0.9808;RSQ=0.9533;ERATE=0.0004;THETA=0.0005;AC=399;AN=2184 GT:DS:GL:BD 0.18269230 0 1 58029277 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6842;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58029282 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0194;AVGPOST=0.9980;RSQ=0.9533;ERATE=0.0006;THETA=0.0005;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 58029296 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.700;LDAF=0.0042;AVGPOST=0.9968;RSQ=0.6996;ERATE=0.0008;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58029316 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.984;LDAF=0.6598;AVGPOST=0.9913;RSQ=0.9852;ERATE=0.0014;THETA=0.0006;AC=1443;AN=2184 GT:DS:GL:BD 0.66071427 1 1 58029329 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.631;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7793;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58029330 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4547;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58029451 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0079;AVGPOST=0.9960;RSQ=0.7918;ERATE=0.0007;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58029452 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.958;LDAF=0.4697;AVGPOST=0.9777;RSQ=0.9659;ERATE=0.0011;THETA=0.0003;AC=1034;AN=2184 GT:DS:GL:BD 0.47344321 0 1 58029457 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.704;LDAF=0.0139;AVGPOST=0.9930;RSQ=0.7933;ERATE=0.0007;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58029489 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.925;LDAF=0.0129;AVGPOST=0.9962;RSQ=0.8823;ERATE=0.0007;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58029526 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.814;LDAF=0.9386;AVGPOST=0.9624;RSQ=0.7662;ERATE=0.0034;THETA=0.0005;AC=2078;AN=2184 GT:DS:GL:BD 0.95146519 1 1 58029583 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.980;LDAF=0.2228;AVGPOST=0.9951;RSQ=0.9889;ERATE=0.0004;THETA=0.0005;AC=490;AN=2184 GT:DS:GL:BD 0.22435898 0 1 58029755 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0045;AVGPOST=0.9972;RSQ=0.7442;ERATE=0.0008;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58029821 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.918;LDAF=0.8803;AVGPOST=0.9850;RSQ=0.9551;ERATE=0.0004;THETA=0.0003;AC=1933;AN=2184 GT:DS:GL:BD 0.88507324 1 1 58029844 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0080;AVGPOST=0.9987;RSQ=0.9388;ERATE=0.0004;THETA=0.0028;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58029854 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.876;LDAF=0.8429;AVGPOST=0.9561;RSQ=0.8868;ERATE=0.0044;THETA=0.0007;AC=1850;AN=2184 GT:DS:GL:BD 0.84706962 1 1 58029883 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.830;LDAF=0.0073;AVGPOST=0.9964;RSQ=0.7957;ERATE=0.0005;THETA=0.0020;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58029950 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5900;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58030099 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9787;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58030185 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6966;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58030270 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.787;LDAF=0.0020;AVGPOST=0.9992;RSQ=0.8209;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58030284 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.976;LDAF=0.9573;AVGPOST=0.9976;RSQ=0.9788;ERATE=0.0005;THETA=0.0007;AC=2091;AN=2184 GT:DS:GL:BD 0.95741761 1 1 58030299 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.682;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5790;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58030386 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0023;AVGPOST=0.9992;RSQ=0.8424;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58030576 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.942;BRSQ=0.696;LDAF=0.9162;AVGPOST=0.9628;RSQ=0.8179;ERATE=0.0013;THETA=0.0002;AC=2011;AN=2184 GT:DS:GL:BD 0.92078757 1 1 58030643 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0188;AVGPOST=0.9999;RSQ=0.9977;ERATE=0.0003;THETA=0.0006;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 58030740 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.718;LDAF=0.0153;AVGPOST=0.9963;RSQ=0.9059;ERATE=0.0004;THETA=0.0002;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58030795 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.946;LDAF=0.6472;AVGPOST=0.9817;RSQ=0.9717;ERATE=0.0005;THETA=0.0004;AC=1411;AN=2184 GT:DS:GL:BD 0.64606225 1 1 58030874 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.784;LDAF=0.0101;AVGPOST=0.9955;RSQ=0.8242;ERATE=0.0004;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58030954 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4901;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58030992 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.723;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7041;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58031374 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8527;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58031388 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0034;AVGPOST=0.9985;RSQ=0.8006;ERATE=0.0021;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58031394 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.685;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6318;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58031413 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7568;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58031704 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58031784 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.954;LDAF=0.8885;AVGPOST=0.9904;RSQ=0.9676;ERATE=0.0016;THETA=0.0003;AC=1945;AN=2184 GT:DS:GL:BD 0.89056778 1 1 58031841 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.835;LDAF=0.0072;AVGPOST=0.9981;RSQ=0.8923;ERATE=0.0004;THETA=0.0018;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58031847 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.956;LDAF=0.0333;AVGPOST=0.9979;RSQ=0.9756;ERATE=0.0004;THETA=0.0006;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 58031978 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7664;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58032018 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0084;AVGPOST=0.9987;RSQ=0.9359;ERATE=0.0004;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58032173 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58032195 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.944;LDAF=0.3732;AVGPOST=0.9770;RSQ=0.9672;ERATE=0.0007;THETA=0.0009;AC=815;AN=2184 GT:DS:GL:BD 0.37316850 0 1 58032323 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.904;BRSQ=0.789;LDAF=0.7437;AVGPOST=0.8522;RSQ=0.7307;ERATE=0.0326;THETA=0.0005;AC=1716;AN=2184 GT:DS:GL:BD 0.78571427 1 1 58032479 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.498;LDAF=0.0019;AVGPOST=0.9970;RSQ=0.3886;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58032490 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.738;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6269;ERATE=0.0006;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58032529 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.737;LDAF=0.0017;AVGPOST=0.9973;RSQ=0.3015;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58032739 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6361;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58032929 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.771;LDAF=0.0111;AVGPOST=0.9936;RSQ=0.7761;ERATE=0.0005;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58032944 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0207;AVGPOST=0.9979;RSQ=0.9585;ERATE=0.0004;THETA=0.0002;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 58032946 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.625;LDAF=0.0031;AVGPOST=0.9979;RSQ=0.7049;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58032960 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.939;BRSQ=0.899;LDAF=0.4388;AVGPOST=0.9404;RSQ=0.9131;ERATE=0.0031;THETA=0.0006;AC=975;AN=2184 GT:DS:GL:BD 0.44642857 0 1 58033144 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.955;LDAF=0.2121;AVGPOST=0.9752;RSQ=0.9451;ERATE=0.0007;THETA=0.0054;AC=468;AN=2184 GT:DS:GL:BD 0.21428572 0 1 58033459 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0062;AVGPOST=0.9989;RSQ=0.9224;ERATE=0.0004;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58033467 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0038;AVGPOST=0.9985;RSQ=0.8183;ERATE=0.0005;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58033521 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.792;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7795;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58033623 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.667;LDAF=0.0023;AVGPOST=0.9963;RSQ=0.3440;ERATE=0.0006;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58033776 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.987;LDAF=0.2041;AVGPOST=0.9800;RSQ=0.9519;ERATE=0.0012;THETA=0.0006;AC=444;AN=2184 GT:DS:GL:BD 0.20329671 0 1 58033862 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0104;AVGPOST=0.9956;RSQ=0.8393;ERATE=0.0005;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58034172 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.944;BRSQ=0.797;LDAF=0.8919;AVGPOST=0.9401;RSQ=0.7763;ERATE=0.0056;THETA=0.0005;AC=1973;AN=2184 GT:DS:GL:BD 0.90338826 1 1 58034209 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0207;AVGPOST=0.9993;RSQ=0.9840;ERATE=0.0004;THETA=0.0005;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 58034241 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.743;LDAF=0.0246;AVGPOST=0.9878;RSQ=0.8230;ERATE=0.0004;THETA=0.0006;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 58034247 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.783;LDAF=0.0211;AVGPOST=0.9883;RSQ=0.7699;ERATE=0.0003;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 58034281 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=0.9990;RSQ=0.9235;ERATE=0.0004;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58034289 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.712;LDAF=0.0058;AVGPOST=0.9950;RSQ=0.6535;ERATE=0.0011;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58034290 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8922;AVGPOST=0.9992;RSQ=0.9966;ERATE=0.0004;THETA=0.0010;AC=1949;AN=2184 GT:DS:GL:BD 0.89239925 1 1 58034543 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.520;LDAF=0.0055;AVGPOST=0.9932;RSQ=0.5349;ERATE=0.0008;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58034794 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.610;BRSQ=0.064;LDAF=0.2330;AVGPOST=0.6801;RSQ=0.2681;ERATE=0.0223;THETA=0.0007;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 58034924 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.837;LDAF=0.0551;AVGPOST=0.9719;RSQ=0.8075;ERATE=0.0019;THETA=0.0005;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 58034959 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.621;LDAF=0.0173;AVGPOST=0.9897;RSQ=0.7638;ERATE=0.0009;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58034960 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.943;BRSQ=0.904;LDAF=0.6036;AVGPOST=0.8685;RSQ=0.8011;ERATE=0.0196;THETA=0.0008;AC=1353;AN=2184 GT:DS:GL:BD 0.61950547 1 1 58035024 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0059;AVGPOST=0.9976;RSQ=0.8329;ERATE=0.0007;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58035034 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.960;LDAF=0.4023;AVGPOST=0.9813;RSQ=0.9718;ERATE=0.0008;THETA=0.0006;AC=883;AN=2184 GT:DS:GL:BD 0.40430403 0 1 58035185 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.943;LDAF=0.0418;AVGPOST=0.9953;RSQ=0.9619;ERATE=0.0006;THETA=0.0011;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 58035190 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.669;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5502;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58035391 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0463;AVGPOST=0.9991;RSQ=0.9919;ERATE=0.0003;THETA=0.0018;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 58035447 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.671;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4191;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58035558 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0197;AVGPOST=0.9989;RSQ=0.9755;ERATE=0.0004;THETA=0.0003;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 58035870 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.8917;AVGPOST=0.9981;RSQ=0.9931;ERATE=0.0004;THETA=0.0010;AC=1949;AN=2184 GT:DS:GL:BD 0.89239925 1 1 58035948 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0013;AVGPOST=0.9981;RSQ=0.4553;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58036042 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.826;LDAF=0.0166;AVGPOST=0.9946;RSQ=0.8674;ERATE=0.0005;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58036083 . TAC T 106839 PASS INDEL;BAVGPOST=1.000;BRSQ=0.701;LDAF=0.9962;AVGPOST=0.9966;RSQ=0.6224;ERATE=0.0005;THETA=0.0027;AC=2177;AN=2184 GT:DS:GL:BD 0.99679488 1 1 58036141 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.6729;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58036171 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0025;AVGPOST=0.9987;RSQ=0.7678;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58036184 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4094;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58036188 . CT C 91 PASS INDEL;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0006;AVGPOST=0.9992;RSQ=0.4735;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58036230 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0018;AVGPOST=0.9985;RSQ=0.6449;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58036323 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0088;AVGPOST=0.9989;RSQ=0.9470;ERATE=0.0004;THETA=0.0008;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58036345 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6836;AVGPOST=0.9965;RSQ=0.9930;ERATE=0.0008;THETA=0.0027;AC=1492;AN=2184 GT:DS:GL:BD 0.68315017 1 1 58036372 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58036398 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7529;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58036401 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.770;LDAF=0.0156;AVGPOST=0.9938;RSQ=0.8444;ERATE=0.0004;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 58036408 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0007;AVGPOST=0.9992;RSQ=0.4726;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58036614 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0017;AVGPOST=0.9979;RSQ=0.5739;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58036684 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.8951;AVGPOST=0.9995;RSQ=0.9978;ERATE=0.0004;THETA=0.0004;AC=1955;AN=2184 GT:DS:GL:BD 0.89514655 1 1 58036711 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1956;AVGPOST=0.9968;RSQ=0.9923;ERATE=0.0008;THETA=0.0002;AC=427;AN=2184 GT:DS:GL:BD 0.19551282 0 1 58036812 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.4746;AVGPOST=0.9955;RSQ=0.9923;ERATE=0.0007;THETA=0.0003;AC=1040;AN=2184 GT:DS:GL:BD 0.47619048 0 1 58036856 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0099;AVGPOST=0.9992;RSQ=0.9688;ERATE=0.0003;THETA=0.0013;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58037014 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2083;AVGPOST=0.9985;RSQ=0.9969;ERATE=0.0003;THETA=0.0003;AC=455;AN=2184 GT:DS:GL:BD 0.20833333 0 1 58037031 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6848;AVGPOST=0.9989;RSQ=0.9978;ERATE=0.0005;THETA=0.0005;AC=1494;AN=2184 GT:DS:GL:BD 0.68406594 1 1 58037133 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7512;ERATE=0.0007;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58037263 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5417;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58037504 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2081;AVGPOST=0.9991;RSQ=0.9977;ERATE=0.0004;THETA=0.0002;AC=455;AN=2184 GT:DS:GL:BD 0.20833333 0 1 58037528 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6200;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58037621 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0092;AVGPOST=0.9999;RSQ=0.9952;ERATE=0.0003;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58037783 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4052;AVGPOST=0.9967;RSQ=0.9949;ERATE=0.0006;THETA=0.0004;AC=884;AN=2184 GT:DS:GL:BD 0.40476191 0 1 58037806 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7804;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58037957 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.0080;AVGPOST=0.9991;RSQ=0.9573;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58038022 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8621;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58038509 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.691;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58038548 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8450;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58038591 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4602;ERATE=0.0003;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58038630 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58038637 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7019;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58038680 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7814;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58038835 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0041;AVGPOST=0.9982;RSQ=0.8161;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58038930 . T TA 114 PASS INDEL;BAVGPOST=0.999;BRSQ=0.656;LDAF=0.0023;AVGPOST=0.9973;RSQ=0.4957;ERATE=0.0009;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58038931 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.759;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7257;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58039046 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2080;AVGPOST=0.9989;RSQ=0.9970;ERATE=0.0004;THETA=0.0002;AC=455;AN=2184 GT:DS:GL:BD 0.20833333 0 1 58039063 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58039117 . T TC 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5788;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58039242 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58039246 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0062;AVGPOST=0.9995;RSQ=0.9598;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58039295 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8476;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58039307 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58039337 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0114;AVGPOST=0.9973;RSQ=0.9176;ERATE=0.0004;THETA=0.0002;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58039400 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.2081;AVGPOST=0.9981;RSQ=0.9951;ERATE=0.0006;THETA=0.0004;AC=455;AN=2184 GT:DS:GL:BD 0.20833333 0 1 58039464 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0084;AVGPOST=0.9986;RSQ=0.9458;ERATE=0.0004;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58039505 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9203;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58039520 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5743;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58039544 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7941;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58039576 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0029;AVGPOST=0.9994;RSQ=0.8986;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58039581 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=0.9999;RSQ=0.9925;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58039608 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7042;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58039690 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58039730 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0061;AVGPOST=0.9983;RSQ=0.8738;ERATE=0.0005;THETA=0.0011;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58039772 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58040084 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5345;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58040111 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7671;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58040173 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.4453;AVGPOST=0.9957;RSQ=0.9939;ERATE=0.0006;THETA=0.0004;AC=971;AN=2184 GT:DS:GL:BD 0.44459707 0 1 58040256 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7148;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58040371 . TAGAACCCC T 678 PASS INDEL;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0057;AVGPOST=0.9969;RSQ=0.7777;ERATE=0.0004;THETA=0.0019;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58040417 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9902;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58040450 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.614;LDAF=0.0025;AVGPOST=0.9981;RSQ=0.6692;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58040543 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5729;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58040759 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58040808 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58040814 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58040898 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0082;AVGPOST=0.9992;RSQ=0.9595;ERATE=0.0004;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58040920 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.909;LDAF=0.9540;AVGPOST=0.9924;RSQ=0.9350;ERATE=0.0009;THETA=0.0004;AC=2091;AN=2184 GT:DS:GL:BD 0.95741761 1 1 58040976 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6355;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58041087 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7408;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58041091 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5938;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58041181 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58041309 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0114;AVGPOST=0.9990;RSQ=0.9657;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58041347 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8054;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58041560 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.813;LDAF=0.0036;AVGPOST=0.9984;RSQ=0.8049;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58041583 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0195;AVGPOST=0.9994;RSQ=0.9878;ERATE=0.0003;THETA=0.0005;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 58041594 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7605;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58041661 . ACAT A 42 PASS INDEL;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.5192;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58041693 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6077;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58041754 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0005;AVGPOST=0.9993;RSQ=0.4903;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58041763 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58041771 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.2572;AVGPOST=0.9915;RSQ=0.9815;ERATE=0.0006;THETA=0.0008;AC=564;AN=2184 GT:DS:GL:BD 0.25824177 0 1 58041772 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.751;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5467;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58041859 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0076;AVGPOST=0.9994;RSQ=0.9699;ERATE=0.0003;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58041904 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0024;AVGPOST=0.9992;RSQ=0.8474;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58042093 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0167;AVGPOST=0.9990;RSQ=0.9745;ERATE=0.0004;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 58042145 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.5636;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58042183 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0019;AVGPOST=0.9985;RSQ=0.7013;ERATE=0.0007;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58042193 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5790;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58042216 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7588;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58042286 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8148;ERATE=0.0003;THETA=0.0029;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58042299 . T TC 6 PASS INDEL;BAVGPOST=0.999;BRSQ=0.633;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58042313 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58042350 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.883;LDAF=0.0076;AVGPOST=0.9987;RSQ=0.9318;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58042505 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6021;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58042550 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.933;LDAF=0.0143;AVGPOST=0.9972;RSQ=0.9205;ERATE=0.0003;THETA=0.0006;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 58042568 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0195;AVGPOST=0.9995;RSQ=0.9892;ERATE=0.0003;THETA=0.0003;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 58042701 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58042716 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.2077;AVGPOST=0.9977;RSQ=0.9947;ERATE=0.0003;THETA=0.0004;AC=454;AN=2184 GT:DS:GL:BD 0.20787546 0 1 58042760 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58042797 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0043;AVGPOST=0.9990;RSQ=0.9002;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58042849 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8927;AVGPOST=0.9993;RSQ=0.9980;ERATE=0.0003;THETA=0.0006;AC=1949;AN=2184 GT:DS:GL:BD 0.89239925 1 1 58042935 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5096;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58043021 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6534;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58043105 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0093;AVGPOST=0.9996;RSQ=0.9813;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58043257 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9678;AVGPOST=0.9995;RSQ=0.9946;ERATE=0.0003;THETA=0.0009;AC=2114;AN=2184 GT:DS:GL:BD 0.96794873 1 1 58043278 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7921;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58043285 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.840;LDAF=0.0057;AVGPOST=0.9973;RSQ=0.8124;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58043290 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.858;LDAF=0.0081;AVGPOST=0.9972;RSQ=0.8657;ERATE=0.0004;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58043302 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8845;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58043349 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8497;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58043384 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0004;AVGPOST=0.9997;RSQ=0.7164;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58043416 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.8926;AVGPOST=0.9989;RSQ=0.9964;ERATE=0.0003;THETA=0.0005;AC=1949;AN=2184 GT:DS:GL:BD 0.89239925 1 1 58043505 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0099;AVGPOST=0.9989;RSQ=0.9439;ERATE=0.0003;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58043593 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8940;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58043854 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.9112;AVGPOST=0.9995;RSQ=0.9973;ERATE=0.0004;THETA=0.0003;AC=1990;AN=2184 GT:DS:GL:BD 0.91117215 1 1 58043877 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58043959 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8426;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58044030 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58044075 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8845;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58044168 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8927;AVGPOST=0.9995;RSQ=0.9982;ERATE=0.0003;THETA=0.0004;AC=1949;AN=2184 GT:DS:GL:BD 0.89239925 1 1 58044193 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8057;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58044301 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0188;AVGPOST=0.9996;RSQ=0.9918;ERATE=0.0003;THETA=0.0014;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 58044337 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0378;AVGPOST=0.9994;RSQ=0.9946;ERATE=0.0003;THETA=0.0010;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 58044350 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0070;AVGPOST=0.9997;RSQ=0.9780;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58044462 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8497;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58044492 . CT C 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4956;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58044501 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.6668;AVGPOST=0.9977;RSQ=0.9957;ERATE=0.0003;THETA=0.0002;AC=1455;AN=2184 GT:DS:GL:BD 0.66620880 1 1 58044629 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0077;AVGPOST=0.9994;RSQ=0.9625;ERATE=0.0004;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58044652 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6273;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58044819 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7705;ERATE=0.0003;THETA=0.0030;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58044909 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58044955 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0381;AVGPOST=0.9995;RSQ=0.9944;ERATE=0.0003;THETA=0.0011;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 58045248 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58045266 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58045292 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0394;AVGPOST=0.9995;RSQ=0.9945;ERATE=0.0003;THETA=0.0005;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 58045375 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0193;AVGPOST=0.9989;RSQ=0.9832;ERATE=0.0003;THETA=0.0005;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 58045485 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8079;ERATE=0.0003;THETA=0.0050;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58045565 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0063;AVGPOST=0.9991;RSQ=0.9435;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58045675 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0080;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58045716 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0045;AVGPOST=0.9998;RSQ=0.9774;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58045739 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.7418;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58045748 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58045756 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.662;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7702;ERATE=0.0003;THETA=0.0054;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58045761 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0102;AVGPOST=0.9975;RSQ=0.9057;ERATE=0.0004;THETA=0.0009;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58045841 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0007;AVGPOST=0.9985;RSQ=0.3397;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 58045867 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0044;AVGPOST=0.9972;RSQ=0.7488;ERATE=0.0017;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58045924 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.824;LDAF=0.0039;AVGPOST=0.9989;RSQ=0.8661;ERATE=0.0003;THETA=0.0030;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58045958 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58045960 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5617;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58045983 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0020;AVGPOST=0.9994;RSQ=0.8945;ERATE=0.0006;THETA=0.0023;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58045997 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0028;AVGPOST=0.9976;RSQ=0.6785;ERATE=0.0008;THETA=0.0017;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58046066 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0169;AVGPOST=0.9995;RSQ=0.9883;ERATE=0.0003;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 58046279 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58046375 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.868;LDAF=0.0036;AVGPOST=0.9984;RSQ=0.7999;ERATE=0.0012;THETA=0.0020;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58046395 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7227;ERATE=0.0003;THETA=0.0019;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58046448 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58046499 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6398;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58046501 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.803;LDAF=0.0038;AVGPOST=0.9989;RSQ=0.8831;ERATE=0.0003;THETA=0.0026;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58046790 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8470;ERATE=0.0003;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58046915 . CATT C 518 PASS INDEL;BAVGPOST=0.999;BRSQ=0.820;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7175;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58046980 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5448;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58046987 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.624;LDAF=0.0043;AVGPOST=0.9950;RSQ=0.5822;ERATE=0.0006;THETA=0.0021;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58047017 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.717;LDAF=0.0174;AVGPOST=0.9898;RSQ=0.7658;ERATE=0.0006;THETA=0.0008;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58047017 . TA T 51 PASS INDEL;BAVGPOST=0.997;BRSQ=0.645;LDAF=0.0085;AVGPOST=0.9926;RSQ=0.6730;ERATE=0.0009;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58047018 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.960;LDAF=0.0188;AVGPOST=0.9994;RSQ=0.9852;ERATE=0.0003;THETA=0.0006;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 58047171 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5723;ERATE=0.0004;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58047204 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0080;AVGPOST=0.9995;RSQ=0.9727;ERATE=0.0004;THETA=0.0010;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58047303 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0192;AVGPOST=0.9989;RSQ=0.9743;ERATE=0.0005;THETA=0.0007;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 58047377 rs57855250 TAAATC T 1975 PASS INDEL;BAVGPOST=0.997;BRSQ=0.925;LDAF=0.0196;AVGPOST=0.9973;RSQ=0.9374;ERATE=0.0007;THETA=0.0012;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 58047415 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.5635;ERATE=0.0005;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58047590 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.783;LDAF=0.0029;AVGPOST=0.9976;RSQ=0.6567;ERATE=0.0006;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58047846 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.835;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8561;ERATE=0.0003;THETA=0.0050;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58047867 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7632;ERATE=0.0003;THETA=0.0030;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58047910 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0137;AVGPOST=0.9998;RSQ=0.9930;ERATE=0.0003;THETA=0.0021;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58047941 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.976;LDAF=0.1959;AVGPOST=0.9893;RSQ=0.9746;ERATE=0.0007;THETA=0.0008;AC=427;AN=2184 GT:DS:GL:BD 0.19551282 0 1 58047967 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0034;AVGPOST=0.9993;RSQ=0.9014;ERATE=0.0003;THETA=0.0092;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58047977 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.702;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6784;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58048058 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5447;ERATE=0.0004;THETA=0.0090;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58048067 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.956;LDAF=0.2017;AVGPOST=0.9799;RSQ=0.9535;ERATE=0.0008;THETA=0.0038;AC=439;AN=2184 GT:DS:GL:BD 0.20100732 0 1 58048308 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7682;ERATE=0.0003;THETA=0.0086;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58048339 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0252;AVGPOST=0.9995;RSQ=0.9914;ERATE=0.0003;THETA=0.0144;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 58048374 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5362;ERATE=0.0003;THETA=0.0083;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58048386 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9676;AVGPOST=0.9989;RSQ=0.9881;ERATE=0.0003;THETA=0.0020;AC=2113;AN=2184 GT:DS:GL:BD 0.96749085 1 1 58048621 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0245;AVGPOST=0.9995;RSQ=0.9920;ERATE=0.0004;THETA=0.0050;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 58048797 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2371;AVGPOST=0.9956;RSQ=0.9906;ERATE=0.0005;THETA=0.0005;AC=517;AN=2184 GT:DS:GL:BD 0.23672161 0 1 58048985 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.985;LDAF=0.2114;AVGPOST=0.9897;RSQ=0.9790;ERATE=0.0010;THETA=0.0008;AC=460;AN=2184 GT:DS:GL:BD 0.21062271 0 1 58049103 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0100;AVGPOST=0.9983;RSQ=0.9382;ERATE=0.0003;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58049104 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.928;LDAF=0.0629;AVGPOST=0.9900;RSQ=0.9336;ERATE=0.0005;THETA=0.0017;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 58049151 . G GT 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.6634;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58049270 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0244;AVGPOST=0.9991;RSQ=0.9853;ERATE=0.0003;THETA=0.0003;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 58049365 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.813;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8558;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58049366 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58049458 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.9618;AVGPOST=0.9965;RSQ=0.9705;ERATE=0.0005;THETA=0.0006;AC=2100;AN=2184 GT:DS:GL:BD 0.96153843 1 1 58049498 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7535;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58049764 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0054;AVGPOST=0.9995;RSQ=0.9641;ERATE=0.0003;THETA=0.0010;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58049839 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6745;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58049881 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.9205;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58050055 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0005;AVGPOST=0.9992;RSQ=0.4709;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58050139 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2141;AVGPOST=0.9984;RSQ=0.9960;ERATE=0.0004;THETA=0.0010;AC=468;AN=2184 GT:DS:GL:BD 0.21428572 0 1 58050148 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0038;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58050246 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0038;AVGPOST=0.9976;RSQ=0.8039;ERATE=0.0003;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58050276 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0092;AVGPOST=0.9998;RSQ=0.9905;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58050311 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2101;AVGPOST=0.9963;RSQ=0.9930;ERATE=0.0003;THETA=0.0004;AC=458;AN=2184 GT:DS:GL:BD 0.20970696 0 1 58050468 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0093;AVGPOST=0.9998;RSQ=0.9881;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58050501 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0095;AVGPOST=0.9988;RSQ=0.9423;ERATE=0.0004;THETA=0.0015;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58050558 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0097;AVGPOST=0.9995;RSQ=0.9755;ERATE=0.0003;THETA=0.0015;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58050612 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0096;AVGPOST=0.9996;RSQ=0.9822;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58050668 . AAT A 25 PASS INDEL;BAVGPOST=1.000;BRSQ=0.719;LDAF=0.0026;AVGPOST=0.9990;RSQ=0.8305;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58050679 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.726;LDAF=0.0025;AVGPOST=0.9977;RSQ=0.5943;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58050714 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.4992;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58050749 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.545;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5057;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58050810 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0154;AVGPOST=0.9994;RSQ=0.9821;ERATE=0.0004;THETA=0.0007;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58050813 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.551;LDAF=0.0018;AVGPOST=0.9972;RSQ=0.2864;ERATE=0.0007;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58051002 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0094;AVGPOST=0.9993;RSQ=0.9662;ERATE=0.0004;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58051157 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.922;LDAF=0.0562;AVGPOST=0.9899;RSQ=0.9305;ERATE=0.0005;THETA=0.0003;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 58051166 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.9666;AVGPOST=0.9991;RSQ=0.9895;ERATE=0.0004;THETA=0.0002;AC=2112;AN=2184 GT:DS:GL:BD 0.96703297 1 1 58051211 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0143;AVGPOST=0.9997;RSQ=0.9891;ERATE=0.0003;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 58051240 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2120;AVGPOST=0.9946;RSQ=0.9900;ERATE=0.0004;THETA=0.0009;AC=460;AN=2184 GT:DS:GL:BD 0.21062271 0 1 58051323 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58051598 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0138;AVGPOST=0.9999;RSQ=0.9972;ERATE=0.0003;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58051622 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5847;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58051633 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58051878 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0422;AVGPOST=0.9980;RSQ=0.9826;ERATE=0.0004;THETA=0.0014;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 58051903 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6745;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58051928 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8681;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58052018 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0138;AVGPOST=0.9999;RSQ=0.9971;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58052046 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5142;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58052250 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58052294 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8618;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58052680 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.753;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58052767 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0003;AVGPOST=0.9996;RSQ=0.5574;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58052795 . TC T 19 PASS INDEL;BAVGPOST=0.999;BRSQ=0.756;LDAF=0.0044;AVGPOST=0.9948;RSQ=0.5767;ERATE=0.0007;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58052796 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0032;AVGPOST=0.9985;RSQ=0.8150;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58052798 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6828;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58052815 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58052838 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.7966;ERATE=0.0005;THETA=0.0038;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58052933 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6426;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58052957 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9674;AVGPOST=0.9995;RSQ=0.9938;ERATE=0.0003;THETA=0.0007;AC=2113;AN=2184 GT:DS:GL:BD 0.96749085 1 1 58053022 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58053080 . AC A 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5443;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58053154 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.7248;AVGPOST=0.9948;RSQ=0.9901;ERATE=0.0006;THETA=0.0002;AC=1581;AN=2184 GT:DS:GL:BD 0.72390109 1 1 58053160 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7414;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58053173 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.6995;AVGPOST=0.9961;RSQ=0.9930;ERATE=0.0004;THETA=0.0006;AC=1526;AN=2184 GT:DS:GL:BD 0.69871795 1 1 58053278 . TCC T 384 PASS INDEL;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.5980;ERATE=0.0004;THETA=0.0031;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58053282 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58053381 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8802;ERATE=0.0003;THETA=0.0064;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58053427 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.971;LDAF=0.6294;AVGPOST=0.9850;RSQ=0.9756;ERATE=0.0006;THETA=0.0135;AC=1379;AN=2184 GT:DS:GL:BD 0.63141024 1 1 58053431 . A AGACTT 357 PASS INDEL;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0010;AVGPOST=0.9987;RSQ=0.4311;ERATE=0.0003;THETA=0.0054;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58053520 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.6221;ERATE=0.0003;THETA=0.0027;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58053560 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0092;AVGPOST=0.9998;RSQ=0.9904;ERATE=0.0003;THETA=0.0064;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58053678 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0038;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58053708 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0055;AVGPOST=0.9997;RSQ=0.9773;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58053893 rs75167684 TAAG T 1386 PASS INDEL;BAVGPOST=0.995;BRSQ=0.808;LDAF=0.0099;AVGPOST=0.9944;RSQ=0.7920;ERATE=0.0005;THETA=0.0020;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58053950 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0060;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58054073 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.855;LDAF=0.0041;AVGPOST=0.9982;RSQ=0.8262;ERATE=0.0005;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58054126 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0121;AVGPOST=0.9987;RSQ=0.9553;ERATE=0.0003;THETA=0.0107;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58054173 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9996;RSQ=0.9584;ERATE=0.0003;THETA=0.0048;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58054208 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0236;AVGPOST=0.9992;RSQ=0.9856;ERATE=0.0003;THETA=0.0028;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 58054405 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.941;LDAF=0.0114;AVGPOST=0.9973;RSQ=0.9120;ERATE=0.0005;THETA=0.0012;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58054422 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8641;ERATE=0.0007;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58054494 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0463;AVGPOST=0.9980;RSQ=0.9831;ERATE=0.0004;THETA=0.0003;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 58054510 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0019;AVGPOST=0.9992;RSQ=0.8270;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58054635 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.985;LDAF=0.2698;AVGPOST=0.9896;RSQ=0.9785;ERATE=0.0005;THETA=0.0004;AC=589;AN=2184 GT:DS:GL:BD 0.26968864 0 1 58054646 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0083;AVGPOST=0.9984;RSQ=0.9084;ERATE=0.0006;THETA=0.0031;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58054646 . GC G 1624 PASS INDEL;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0239;AVGPOST=0.9985;RSQ=0.9746;ERATE=0.0004;THETA=0.0007;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 58054737 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0051;AVGPOST=0.9980;RSQ=0.8367;ERATE=0.0005;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58054814 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.924;LDAF=0.1467;AVGPOST=0.9773;RSQ=0.9387;ERATE=0.0004;THETA=0.0007;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 58054880 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0060;AVGPOST=0.9989;RSQ=0.9193;ERATE=0.0004;THETA=0.0013;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58054928 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58054961 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0056;AVGPOST=0.9989;RSQ=0.9105;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58055239 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5640;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58055330 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.971;LDAF=0.0463;AVGPOST=0.9984;RSQ=0.9860;ERATE=0.0004;THETA=0.0004;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 58055346 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4853;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58055485 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.2279;AVGPOST=0.9951;RSQ=0.9902;ERATE=0.0004;THETA=0.0004;AC=495;AN=2184 GT:DS:GL:BD 0.22664835 0 1 58055535 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0023;AVGPOST=0.9982;RSQ=0.6623;ERATE=0.0006;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58055642 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0050;AVGPOST=0.9983;RSQ=0.8476;ERATE=0.0005;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58055726 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2279;AVGPOST=0.9967;RSQ=0.9927;ERATE=0.0004;THETA=0.0005;AC=496;AN=2184 GT:DS:GL:BD 0.22710623 0 1 58055858 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0027;AVGPOST=0.9973;RSQ=0.7092;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58055859 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4780;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58055884 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0085;AVGPOST=0.9984;RSQ=0.9287;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58055890 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0216;AVGPOST=0.9985;RSQ=0.9705;ERATE=0.0006;THETA=0.0004;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 58055902 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.614;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7701;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58055934 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58055940 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9680;AVGPOST=0.9999;RSQ=0.9981;ERATE=0.0003;THETA=0.0006;AC=2114;AN=2184 GT:DS:GL:BD 0.96794873 1 1 58056171 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0037;AVGPOST=0.9965;RSQ=0.6646;ERATE=0.0006;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58056219 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0024;AVGPOST=0.9973;RSQ=0.5469;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58056345 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7744;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58056381 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0081;AVGPOST=0.9993;RSQ=0.9598;ERATE=0.0004;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58056589 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6826;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58056615 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0041;AVGPOST=0.9990;RSQ=0.9098;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58056627 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0021;AVGPOST=0.9979;RSQ=0.5590;ERATE=0.0006;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58056761 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58056838 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0222;AVGPOST=0.9993;RSQ=0.9872;ERATE=0.0003;THETA=0.0003;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 58056923 . TCA T 70 PASS INDEL;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58056937 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.660;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7924;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58057016 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5853;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58057033 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7410;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58057052 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0077;AVGPOST=0.9989;RSQ=0.9447;ERATE=0.0003;THETA=0.0026;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58057194 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8844;ERATE=0.0005;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58057228 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58057340 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.7502;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58057344 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7063;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58057451 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7561;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58057459 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.634;LDAF=0.0035;AVGPOST=0.9974;RSQ=0.6818;ERATE=0.0009;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58057479 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9394;ERATE=0.0004;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58057504 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8496;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58057565 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0005;AVGPOST=0.9990;RSQ=0.2909;ERATE=0.0003;THETA=0.0008;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 58057576 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0036;AVGPOST=0.9990;RSQ=0.8967;ERATE=0.0003;THETA=0.0016;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58057677 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58057692 . AT A 931 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0065;AVGPOST=0.9996;RSQ=0.9733;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58057795 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6516;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58057838 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.714;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8510;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58057839 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58057872 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2692;AVGPOST=0.9953;RSQ=0.9907;ERATE=0.0004;THETA=0.0006;AC=587;AN=2184 GT:DS:GL:BD 0.26877290 0 1 58057955 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7717;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58058084 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9680;AVGPOST=0.9991;RSQ=0.9909;ERATE=0.0004;THETA=0.0010;AC=2114;AN=2184 GT:DS:GL:BD 0.96794873 1 1 58058103 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0038;AVGPOST=0.9959;RSQ=0.6233;ERATE=0.0011;THETA=0.0057;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58058152 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58058207 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58058326 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2868;AVGPOST=0.9968;RSQ=0.9940;ERATE=0.0003;THETA=0.0038;AC=626;AN=2184 GT:DS:GL:BD 0.28663003 0 1 58058379 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.7492;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58058495 . TA T 18 PASS INDEL;BAVGPOST=0.997;BRSQ=0.557;LDAF=0.0033;AVGPOST=0.9952;RSQ=0.4240;ERATE=0.0008;THETA=0.0076;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58058527 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.2973;AVGPOST=0.9962;RSQ=0.9933;ERATE=0.0005;THETA=0.0011;AC=648;AN=2184 GT:DS:GL:BD 0.29670331 0 1 58058529 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0225;AVGPOST=0.9990;RSQ=0.9813;ERATE=0.0005;THETA=0.0052;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 58058589 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3072;AVGPOST=0.9970;RSQ=0.9943;ERATE=0.0004;THETA=0.0035;AC=670;AN=2184 GT:DS:GL:BD 0.30677655 0 1 58058686 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3067;AVGPOST=0.9981;RSQ=0.9965;ERATE=0.0003;THETA=0.0009;AC=669;AN=2184 GT:DS:GL:BD 0.30631867 0 1 58058881 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.9607;AVGPOST=0.9995;RSQ=0.9945;ERATE=0.0003;THETA=0.0014;AC=2098;AN=2184 GT:DS:GL:BD 0.96062273 1 1 58058951 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8622;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58059113 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8894;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58059209 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0119;AVGPOST=0.9981;RSQ=0.9460;ERATE=0.0003;THETA=0.0012;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 58059309 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.9615;AVGPOST=0.9993;RSQ=0.9923;ERATE=0.0004;THETA=0.0028;AC=2100;AN=2184 GT:DS:GL:BD 0.96153843 1 1 58059356 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0126;AVGPOST=0.9993;RSQ=0.9762;ERATE=0.0003;THETA=0.0041;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 58059397 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9992;RSQ=0.9520;ERATE=0.0003;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58059470 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0156;AVGPOST=0.9998;RSQ=0.9951;ERATE=0.0003;THETA=0.0002;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58059515 . TA T 1327 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0095;AVGPOST=0.9991;RSQ=0.9539;ERATE=0.0004;THETA=0.0008;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58059714 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8664;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58059875 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8148;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58059898 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58059925 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5492;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58060005 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58060028 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0152;AVGPOST=0.9966;RSQ=0.9152;ERATE=0.0006;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 58060108 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.2668;AVGPOST=0.9904;RSQ=0.9804;ERATE=0.0014;THETA=0.0012;AC=583;AN=2184 GT:DS:GL:BD 0.26694140 0 1 58060147 rs5774359 GC G 2849 PASS INDEL;BAVGPOST=0.994;BRSQ=0.932;LDAF=0.0376;AVGPOST=0.9897;RSQ=0.9022;ERATE=0.0007;THETA=0.0063;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 58060238 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0107;AVGPOST=0.9990;RSQ=0.9641;ERATE=0.0004;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58060394 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.716;LDAF=0.0032;AVGPOST=0.9965;RSQ=0.5931;ERATE=0.0006;THETA=0.0020;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58060410 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.727;LDAF=0.0165;AVGPOST=0.9927;RSQ=0.8317;ERATE=0.0004;THETA=0.0066;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58060446 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.579;LDAF=0.0033;AVGPOST=0.9960;RSQ=0.4547;ERATE=0.0010;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58060573 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.489;LDAF=0.0041;AVGPOST=0.9957;RSQ=0.6066;ERATE=0.0004;THETA=0.0032;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58060647 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.908;LDAF=0.0103;AVGPOST=0.9961;RSQ=0.8726;ERATE=0.0005;THETA=0.0041;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58060670 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.860;LDAF=0.0076;AVGPOST=0.9957;RSQ=0.7852;ERATE=0.0004;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58060766 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5624;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58060769 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.690;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.6762;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58060803 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.729;LDAF=0.0043;AVGPOST=0.9963;RSQ=0.6368;ERATE=0.0011;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58060832 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.757;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5878;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58060860 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.948;LDAF=0.0130;AVGPOST=0.9935;RSQ=0.8190;ERATE=0.0013;THETA=0.0007;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58060919 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.448;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6643;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58060920 . A AT 37 PASS INDEL;BAVGPOST=0.997;BRSQ=0.494;LDAF=0.0063;AVGPOST=0.9930;RSQ=0.5101;ERATE=0.0015;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58060935 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.607;LDAF=0.0053;AVGPOST=0.9946;RSQ=0.5646;ERATE=0.0010;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58061002 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.757;LDAF=0.0057;AVGPOST=0.9968;RSQ=0.7480;ERATE=0.0007;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58061086 rs111953307 A AAGCTAC 8168 PASS INDEL;BAVGPOST=0.996;BRSQ=0.948;LDAF=0.0335;AVGPOST=0.9958;RSQ=0.9492;ERATE=0.0008;THETA=0.0008;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 58061088 . G GCT 1274 PASS INDEL;BAVGPOST=0.988;BRSQ=0.859;LDAF=0.0293;AVGPOST=0.9959;RSQ=0.9462;ERATE=0.0005;THETA=0.0006;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 58061121 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9789;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58061127 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0031;AVGPOST=0.9982;RSQ=0.7641;ERATE=0.0006;THETA=0.0042;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58061129 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0094;AVGPOST=0.9990;RSQ=0.9573;ERATE=0.0003;THETA=0.0009;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58061136 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6978;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58061218 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.5068;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58061239 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6620;ERATE=0.0003;THETA=0.0043;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58061282 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7813;ERATE=0.0003;THETA=0.0036;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58061298 . T TC 230 PASS INDEL;BAVGPOST=0.990;BRSQ=0.560;LDAF=0.0200;AVGPOST=0.9726;RSQ=0.4362;ERATE=0.0053;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58061305 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=0.9993;RSQ=0.9715;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58061350 . TG T 645 PASS INDEL;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0086;AVGPOST=0.9987;RSQ=0.9330;ERATE=0.0006;THETA=0.0040;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58061376 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.7117;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58061455 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0106;AVGPOST=0.9995;RSQ=0.9797;ERATE=0.0003;THETA=0.0012;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58061468 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.822;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.6955;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58061502 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0025;AVGPOST=0.9980;RSQ=0.7026;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58061526 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.2418;AVGPOST=0.9910;RSQ=0.9832;ERATE=0.0004;THETA=0.0006;AC=524;AN=2184 GT:DS:GL:BD 0.23992674 0 1 58061565 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.7872;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58061604 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.828;LDAF=0.0046;AVGPOST=0.9984;RSQ=0.8771;ERATE=0.0004;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58061688 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=0.9992;RSQ=0.9660;ERATE=0.0003;THETA=0.0037;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58061804 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8613;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58061849 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0054;AVGPOST=0.9989;RSQ=0.9256;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58061949 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0042;AVGPOST=0.9996;RSQ=0.9583;ERATE=0.0003;THETA=0.0043;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58061980 rs67567642 ATT A 25173 PASS INDEL;BAVGPOST=0.989;BRSQ=0.972;LDAF=0.2464;AVGPOST=0.9933;RSQ=0.9864;ERATE=0.0006;THETA=0.0004;AC=535;AN=2184 GT:DS:GL:BD 0.24496336 0 1 58061983 . TTA T 2909 PASS INDEL;BAVGPOST=0.986;BRSQ=0.966;LDAF=0.2432;AVGPOST=0.9903;RSQ=0.9794;ERATE=0.0010;THETA=0.0005;AC=533;AN=2184 GT:DS:GL:BD 0.24404761 0 1 58062012 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58062085 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9824;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58062129 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58062360 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6519;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58062374 . TTA T 434 PASS INDEL;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7068;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58062448 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7822;ERATE=0.0003;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58062466 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0086;AVGPOST=0.9984;RSQ=0.9235;ERATE=0.0004;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58062496 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2874;AVGPOST=0.9980;RSQ=0.9959;ERATE=0.0006;THETA=0.0009;AC=627;AN=2184 GT:DS:GL:BD 0.28708792 0 1 58062570 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7587;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58062642 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.882;LDAF=0.0101;AVGPOST=0.9972;RSQ=0.8881;ERATE=0.0004;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58062717 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4363;AVGPOST=0.9984;RSQ=0.9976;ERATE=0.0004;THETA=0.0002;AC=953;AN=2184 GT:DS:GL:BD 0.43635532 0 1 58062765 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0244;AVGPOST=0.9996;RSQ=0.9935;ERATE=0.0003;THETA=0.0014;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 58062846 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7677;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58062920 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.952;LDAF=0.1236;AVGPOST=0.9902;RSQ=0.9679;ERATE=0.0005;THETA=0.0002;AC=265;AN=2184 GT:DS:GL:BD 0.12133700 0 1 58062953 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9260;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58062981 . G GA 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5157;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58063017 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58063172 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.573;LDAF=0.0061;AVGPOST=0.9924;RSQ=0.5235;ERATE=0.0024;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58063181 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7285;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58063306 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=0.9999;RSQ=0.9910;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58063427 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2301;AVGPOST=0.9978;RSQ=0.9947;ERATE=0.0006;THETA=0.0005;AC=503;AN=2184 GT:DS:GL:BD 0.23031135 0 1 58063429 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7016;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58063694 . AC A 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.749;LDAF=0.0028;AVGPOST=0.9977;RSQ=0.6546;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58063844 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.545;LDAF=0.0034;AVGPOST=0.9961;RSQ=0.5206;ERATE=0.0007;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58064012 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4374;AVGPOST=0.9992;RSQ=0.9988;ERATE=0.0003;THETA=0.0004;AC=955;AN=2184 GT:DS:GL:BD 0.43727106 0 1 58064032 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6237;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58064199 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0127;AVGPOST=0.9997;RSQ=0.9889;ERATE=0.0003;THETA=0.0006;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 58064225 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58064356 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.760;LDAF=0.0029;AVGPOST=0.9988;RSQ=0.8292;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58064393 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4375;AVGPOST=0.9986;RSQ=0.9978;ERATE=0.0006;THETA=0.0002;AC=955;AN=2184 GT:DS:GL:BD 0.43727106 0 1 58064455 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4373;AVGPOST=0.9993;RSQ=0.9988;ERATE=0.0004;THETA=0.0009;AC=955;AN=2184 GT:DS:GL:BD 0.43727106 0 1 58064458 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0142;AVGPOST=0.9979;RSQ=0.9393;ERATE=0.0015;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58064486 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6283;ERATE=0.0008;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58064524 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.785;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8847;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58064643 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2291;AVGPOST=0.9986;RSQ=0.9970;ERATE=0.0003;THETA=0.0002;AC=501;AN=2184 GT:DS:GL:BD 0.22939560 0 1 58064765 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0013;AVGPOST=0.9997;RSQ=0.8887;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58064805 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8588;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58064898 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2265;AVGPOST=0.9989;RSQ=0.9974;ERATE=0.0003;THETA=0.0005;AC=495;AN=2184 GT:DS:GL:BD 0.22664835 0 1 58065084 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6404;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58065118 . G GC 16818 PASS INDEL;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.4373;AVGPOST=0.9959;RSQ=0.9942;ERATE=0.0009;THETA=0.0004;AC=957;AN=2184 GT:DS:GL:BD 0.43818682 0 1 58065213 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6620;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58065374 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9535;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58065660 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2472;AVGPOST=0.9994;RSQ=0.9986;ERATE=0.0003;THETA=0.0003;AC=539;AN=2184 GT:DS:GL:BD 0.24679486 0 1 58065690 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7081;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58065706 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58065750 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4371;AVGPOST=0.9993;RSQ=0.9990;ERATE=0.0003;THETA=0.0009;AC=954;AN=2184 GT:DS:GL:BD 0.43681318 0 1 58065863 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0095;AVGPOST=0.9993;RSQ=0.9742;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58065885 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58065946 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.850;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6195;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58066068 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.875;LDAF=0.0077;AVGPOST=0.9955;RSQ=0.7592;ERATE=0.0003;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58066152 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7801;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58066165 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9203;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58066218 . TC T 8 PASS INDEL;BAVGPOST=0.999;BRSQ=0.717;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7289;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58066242 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7335;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58066250 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0005;AVGPOST=0.9991;RSQ=0.2015;ERATE=0.0004;THETA=0.0008;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 58066369 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58066378 . AAT A 798 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.9081;ERATE=0.0004;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58066415 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.6266;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58066451 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0044;AVGPOST=0.9994;RSQ=0.9312;ERATE=0.0004;THETA=0.0016;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58066474 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0031;AVGPOST=0.9982;RSQ=0.7721;ERATE=0.0012;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58066509 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2051;AVGPOST=0.9988;RSQ=0.9966;ERATE=0.0004;THETA=0.0002;AC=448;AN=2184 GT:DS:GL:BD 0.20512821 0 1 58066537 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8978;AVGPOST=0.9975;RSQ=0.9921;ERATE=0.0004;THETA=0.0003;AC=1960;AN=2184 GT:DS:GL:BD 0.89743590 1 1 58066691 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.715;LDAF=0.0063;AVGPOST=0.9954;RSQ=0.7147;ERATE=0.0006;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58066998 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6945;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58067278 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58067560 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4374;AVGPOST=0.9977;RSQ=0.9969;ERATE=0.0005;THETA=0.0003;AC=955;AN=2184 GT:DS:GL:BD 0.43727106 0 1 58067711 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0092;AVGPOST=0.9996;RSQ=0.9833;ERATE=0.0003;THETA=0.0009;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58067715 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2475;AVGPOST=0.9967;RSQ=0.9938;ERATE=0.0006;THETA=0.0008;AC=540;AN=2184 GT:DS:GL:BD 0.24725275 0 1 58067716 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6004;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58067724 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2635;AVGPOST=0.9984;RSQ=0.9964;ERATE=0.0004;THETA=0.0005;AC=574;AN=2184 GT:DS:GL:BD 0.26282051 0 1 58067725 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6107;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58067787 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0089;AVGPOST=0.9986;RSQ=0.9338;ERATE=0.0004;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58068119 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6999;AVGPOST=0.9980;RSQ=0.9968;ERATE=0.0005;THETA=0.0006;AC=1527;AN=2184 GT:DS:GL:BD 0.69917583 1 1 58068175 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7007;AVGPOST=0.9989;RSQ=0.9982;ERATE=0.0006;THETA=0.0004;AC=1529;AN=2184 GT:DS:GL:BD 0.70009160 1 1 58068343 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7750;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58068407 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8890;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58068428 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9484;AVGPOST=0.9994;RSQ=0.9958;ERATE=0.0003;THETA=0.0003;AC=2071;AN=2184 GT:DS:GL:BD 0.94826007 1 1 58068450 . CTG C 90 PASS INDEL;BAVGPOST=0.993;BRSQ=0.648;LDAF=0.0188;AVGPOST=0.9776;RSQ=0.5249;ERATE=0.0063;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58068479 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.665;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6834;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58068566 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7775;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58068625 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.637;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8216;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58068707 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.765;LDAF=0.0037;AVGPOST=0.9973;RSQ=0.7035;ERATE=0.0006;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58068770 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2629;AVGPOST=0.9959;RSQ=0.9913;ERATE=0.0006;THETA=0.0006;AC=571;AN=2184 GT:DS:GL:BD 0.26144689 0 1 58068851 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2484;AVGPOST=0.9965;RSQ=0.9927;ERATE=0.0006;THETA=0.0004;AC=541;AN=2184 GT:DS:GL:BD 0.24771062 0 1 58068865 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6949;AVGPOST=0.9977;RSQ=0.9965;ERATE=0.0004;THETA=0.0006;AC=1516;AN=2184 GT:DS:GL:BD 0.69413918 1 1 58068887 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.699;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7650;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58069131 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7007;AVGPOST=0.9997;RSQ=0.9994;ERATE=0.0003;THETA=0.0005;AC=1529;AN=2184 GT:DS:GL:BD 0.70009160 1 1 58069133 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0245;AVGPOST=0.9995;RSQ=0.9907;ERATE=0.0003;THETA=0.0002;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 58069383 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.965;LDAF=0.1491;AVGPOST=0.9977;RSQ=0.9921;ERATE=0.0004;THETA=0.0004;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 58069432 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5745;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58069523 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.9229;AVGPOST=0.9993;RSQ=0.9971;ERATE=0.0003;THETA=0.0006;AC=2015;AN=2184 GT:DS:GL:BD 0.92261904 1 1 58069694 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.917;LDAF=0.0036;AVGPOST=0.9990;RSQ=0.8722;ERATE=0.0006;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58069741 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58069951 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58069967 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6471;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58070143 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2446;AVGPOST=0.9960;RSQ=0.9918;ERATE=0.0004;THETA=0.0007;AC=534;AN=2184 GT:DS:GL:BD 0.24450549 0 1 58070166 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0021;AVGPOST=0.9976;RSQ=0.5470;ERATE=0.0007;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58070186 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58070244 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4374;AVGPOST=0.9976;RSQ=0.9963;ERATE=0.0005;THETA=0.0004;AC=955;AN=2184 GT:DS:GL:BD 0.43727106 0 1 58070292 . T TG 24 PASS INDEL;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6678;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58070308 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4468;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58070364 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0092;AVGPOST=0.9988;RSQ=0.9572;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58070737 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8879;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58070771 . GGAA G 83 PASS INDEL;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0025;AVGPOST=0.9988;RSQ=0.7912;ERATE=0.0004;THETA=0.0022;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58070880 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5950;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58070918 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0032;AVGPOST=0.9992;RSQ=0.8986;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58070971 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5545;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58070981 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.9056;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58071049 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5381;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58071079 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9998;RSQ=0.9898;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58071227 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.948;LDAF=0.0024;AVGPOST=0.9985;RSQ=0.8009;ERATE=0.0009;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58071430 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7180;AVGPOST=0.9984;RSQ=0.9974;ERATE=0.0004;THETA=0.0009;AC=1567;AN=2184 GT:DS:GL:BD 0.71749085 1 1 58071680 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58071720 rs77686345 T TG 29793 PASS INDEL;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2510;AVGPOST=0.9952;RSQ=0.9907;ERATE=0.0010;THETA=0.0008;AC=549;AN=2184 GT:DS:GL:BD 0.25137362 0 1 58071842 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0053;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58071960 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9489;AVGPOST=0.9995;RSQ=0.9970;ERATE=0.0003;THETA=0.0008;AC=2072;AN=2184 GT:DS:GL:BD 0.94871795 1 1 58071978 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6447;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58071989 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0227;AVGPOST=0.9980;RSQ=0.9672;ERATE=0.0012;THETA=0.0004;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 58072174 rs72388336 TATATA T 2159 PASS INDEL;BAVGPOST=0.772;BRSQ=0.411;LDAF=0.2642;AVGPOST=0.8064;RSQ=0.5966;ERATE=0.0095;THETA=0.0005;AC=480;AN=2184 GT:DS:GL:BD 0.21978022 0 1 58072183 . TA T 205 PASS INDEL;BAVGPOST=0.743;BRSQ=0.164;LDAF=0.2500;AVGPOST=0.7814;RSQ=0.5208;ERATE=0.0138;THETA=0.0003;AC=439;AN=2184 GT:DS:GL:BD 0.20100732 0 1 58072223 . AATATATT A 11 PASS INDEL;BAVGPOST=0.920;BRSQ=0.009;LDAF=0.0855;AVGPOST=0.8638;RSQ=0.3018;ERATE=0.0061;THETA=0.0004;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 58072231 . ATATAT A 544 PASS INDEL;BAVGPOST=0.824;BRSQ=0.066;LDAF=0.1412;AVGPOST=0.7943;RSQ=0.3154;ERATE=0.0094;THETA=0.0006;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 58072235 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.809;BRSQ=0.210;LDAF=0.2350;AVGPOST=0.6936;RSQ=0.2893;ERATE=0.0242;THETA=0.0007;AC=277;AN=2184 GT:DS:GL:BD 0.12683150 0 1 58072236 . T TTA 170 PASS INDEL;BAVGPOST=0.876;BRSQ=0.058;LDAF=0.1500;AVGPOST=0.7841;RSQ=0.3138;ERATE=0.0119;THETA=0.0004;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 58072290 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.822;BRSQ=0.152;LDAF=0.1790;AVGPOST=0.7434;RSQ=0.2869;ERATE=0.0242;THETA=0.0002;AC=161;AN=2184 GT:DS:GL:BD 0.07371795 0 1 58072322 rs72188434 ATT A 1965 PASS INDEL;BAVGPOST=0.836;BRSQ=0.014;LDAF=0.8442;AVGPOST=0.7497;RSQ=0.2082;ERATE=0.0175;THETA=0.0005;AC=2071;AN=2184 GT:DS:GL:BD 0.94826007 1 1 58072338 rs71051242 ATATGAAATATATATTATG A 2861 PASS INDEL;BAVGPOST=0.759;BRSQ=0.360;LDAF=0.2612;AVGPOST=0.9023;RSQ=0.8089;ERATE=0.0036;THETA=0.0005;AC=580;AN=2184 GT:DS:GL:BD 0.26556778 0 1 58072351 . ATTATG A 1228 PASS INDEL;BAVGPOST=0.765;BRSQ=0.376;LDAF=0.2476;AVGPOST=0.9682;RSQ=0.9332;ERATE=0.0005;THETA=0.0003;AC=549;AN=2184 GT:DS:GL:BD 0.25137362 0 1 58072444 . A AC 153 PASS INDEL;BAVGPOST=0.986;BRSQ=0.314;LDAF=0.0266;AVGPOST=0.9621;RSQ=0.3945;ERATE=0.0035;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 58072465 . T TAGAG 5038 PASS INDEL;BAVGPOST=0.627;BRSQ=0.324;LDAF=0.4265;AVGPOST=0.6812;RSQ=0.4478;ERATE=0.0537;THETA=0.0008;AC=888;AN=2184 GT:DS:GL:BD 0.40659341 0 1 58072605 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.963;LDAF=0.9449;AVGPOST=0.9887;RSQ=0.9230;ERATE=0.0011;THETA=0.0014;AC=2068;AN=2184 GT:DS:GL:BD 0.94688642 1 1 58072653 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2396;AVGPOST=0.9894;RSQ=0.9804;ERATE=0.0008;THETA=0.0004;AC=521;AN=2184 GT:DS:GL:BD 0.23855311 0 1 58072736 rs10616926 GGT G 46086 PASS INDEL;BAVGPOST=0.990;BRSQ=0.930;LDAF=0.9313;AVGPOST=0.9788;RSQ=0.8810;ERATE=0.0033;THETA=0.0003;AC=2050;AN=2184 GT:DS:GL:BD 0.93864471 1 1 58072783 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7683;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58072883 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.853;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9809;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58072886 . A AT 178 PASS INDEL;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0038;AVGPOST=0.9972;RSQ=0.7133;ERATE=0.0006;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58072896 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.9383;AVGPOST=0.9979;RSQ=0.9889;ERATE=0.0004;THETA=0.0008;AC=2050;AN=2184 GT:DS:GL:BD 0.93864471 1 1 58073011 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8639;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58073142 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.9367;AVGPOST=0.9991;RSQ=0.9951;ERATE=0.0004;THETA=0.0013;AC=2045;AN=2184 GT:DS:GL:BD 0.93635529 1 1 58073308 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.9091;AVGPOST=0.9984;RSQ=0.9935;ERATE=0.0007;THETA=0.0013;AC=1985;AN=2184 GT:DS:GL:BD 0.90888280 1 1 58073432 . GAC G 200 PASS INDEL;BAVGPOST=0.998;BRSQ=0.696;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8757;ERATE=0.0003;THETA=0.0059;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58073476 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.720;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6204;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58073538 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0032;AVGPOST=0.9997;RSQ=0.9540;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58073547 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0095;AVGPOST=0.9993;RSQ=0.9642;ERATE=0.0004;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58073655 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.6029;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58073740 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58073744 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.690;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7046;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58073865 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0044;AVGPOST=0.9995;RSQ=0.9401;ERATE=0.0004;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58074020 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.893;LDAF=0.0034;AVGPOST=0.9988;RSQ=0.8435;ERATE=0.0008;THETA=0.0033;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58074048 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0035;AVGPOST=0.9982;RSQ=0.7927;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58074066 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.1813;AVGPOST=0.9965;RSQ=0.9896;ERATE=0.0006;THETA=0.0006;AC=397;AN=2184 GT:DS:GL:BD 0.18177655 0 1 58074072 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6471;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58074089 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5552;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58074190 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.9012;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58074259 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0174;AVGPOST=0.9988;RSQ=0.9719;ERATE=0.0004;THETA=0.0011;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 58074328 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.723;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6758;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58074544 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0196;AVGPOST=0.9982;RSQ=0.9675;ERATE=0.0004;THETA=0.0004;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 58074613 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0021;AVGPOST=0.9983;RSQ=0.6645;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58074660 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0034;AVGPOST=0.9984;RSQ=0.8248;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58074725 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.572;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5073;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58074861 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0013;AVGPOST=0.9997;RSQ=0.9118;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58074864 . G GT 1512 PASS INDEL;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0097;AVGPOST=0.9980;RSQ=0.9263;ERATE=0.0004;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58074867 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7364;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58074893 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.5410;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58074902 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0004;AVGPOST=0.9996;RSQ=0.6076;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58075169 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0015;AVGPOST=0.9992;RSQ=0.7964;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58075285 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9425;AVGPOST=0.9992;RSQ=0.9950;ERATE=0.0003;THETA=0.0007;AC=2059;AN=2184 GT:DS:GL:BD 0.94276559 1 1 58075370 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58075542 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9477;AVGPOST=0.9996;RSQ=0.9970;ERATE=0.0003;THETA=0.0003;AC=2070;AN=2184 GT:DS:GL:BD 0.94780219 1 1 58075613 . C CG 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6213;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58075793 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.8000;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58075874 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.848;LDAF=0.0039;AVGPOST=0.9989;RSQ=0.8962;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58075924 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0038;AVGPOST=0.9966;RSQ=0.7079;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58076014 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.803;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7738;ERATE=0.0007;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58076016 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7530;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58076018 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58076046 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9437;AVGPOST=0.9997;RSQ=0.9975;ERATE=0.0004;THETA=0.0009;AC=2061;AN=2184 GT:DS:GL:BD 0.94368130 1 1 58076072 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.723;LDAF=0.0029;AVGPOST=0.9984;RSQ=0.7914;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58076210 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7740;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58076289 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0025;AVGPOST=0.9987;RSQ=0.7889;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58076321 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.742;LDAF=0.0073;AVGPOST=0.9997;RSQ=0.9858;ERATE=0.0003;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58076388 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.784;LDAF=0.0055;AVGPOST=0.9976;RSQ=0.8320;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58076409 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0021;AVGPOST=0.9974;RSQ=0.5192;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58076481 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.7045;ERATE=0.0005;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58076497 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58076511 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.832;LDAF=0.0028;AVGPOST=0.9982;RSQ=0.7633;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58076648 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.896;LDAF=0.0080;AVGPOST=0.9982;RSQ=0.9140;ERATE=0.0005;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58076714 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7725;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58076777 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0015;AVGPOST=0.9992;RSQ=0.7629;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58076825 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0121;AVGPOST=0.9983;RSQ=0.9426;ERATE=0.0004;THETA=0.0002;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58076850 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0125;AVGPOST=0.9991;RSQ=0.9758;ERATE=0.0003;THETA=0.0002;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58077005 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9382;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58077023 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2128;AVGPOST=0.9991;RSQ=0.9977;ERATE=0.0003;THETA=0.0006;AC=466;AN=2184 GT:DS:GL:BD 0.21336997 0 1 58077088 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9490;ERATE=0.0003;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58077100 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1787;AVGPOST=0.9988;RSQ=0.9962;ERATE=0.0004;THETA=0.0005;AC=391;AN=2184 GT:DS:GL:BD 0.17902930 0 1 58077231 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0069;AVGPOST=0.9991;RSQ=0.9453;ERATE=0.0003;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58077265 . AC A 168 PASS INDEL;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.6720;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58077319 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6115;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58077425 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.938;LDAF=0.0138;AVGPOST=0.9986;RSQ=0.9607;ERATE=0.0004;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 58077427 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2390;AVGPOST=0.9983;RSQ=0.9962;ERATE=0.0004;THETA=0.0004;AC=520;AN=2184 GT:DS:GL:BD 0.23809524 0 1 58077478 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0013;AVGPOST=0.9997;RSQ=0.9006;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58077545 . C CT 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8395;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58077635 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9479;AVGPOST=1.0000;RSQ=0.9996;ERATE=0.0003;THETA=0.0004;AC=2070;AN=2184 GT:DS:GL:BD 0.94780219 1 1 58077808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6996;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58077823 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8623;ERATE=0.0003;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58077932 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58078005 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7937;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58078191 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4615;AVGPOST=0.9984;RSQ=0.9975;ERATE=0.0005;THETA=0.0004;AC=1007;AN=2184 GT:DS:GL:BD 0.46108058 0 1 58078467 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7250;AVGPOST=0.9990;RSQ=0.9980;ERATE=0.0005;THETA=0.0004;AC=1582;AN=2184 GT:DS:GL:BD 0.72435898 1 1 58078495 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0082;AVGPOST=0.9980;RSQ=0.9152;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58078598 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.897;LDAF=0.0167;AVGPOST=0.9983;RSQ=0.9570;ERATE=0.0004;THETA=0.0002;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 58078661 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58078743 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0049;AVGPOST=0.9992;RSQ=0.9368;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58078803 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0112;AVGPOST=0.9995;RSQ=0.9837;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58078894 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0110;AVGPOST=0.9997;RSQ=0.9861;ERATE=0.0004;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58079061 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0076;AVGPOST=0.9993;RSQ=0.9621;ERATE=0.0003;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58079074 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.649;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58079092 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.755;LDAF=0.0030;AVGPOST=0.9993;RSQ=0.9005;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58079143 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2388;AVGPOST=0.9983;RSQ=0.9961;ERATE=0.0004;THETA=0.0004;AC=521;AN=2184 GT:DS:GL:BD 0.23855311 0 1 58079162 . CTA C 149 PASS INDEL;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8344;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58079307 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.5650;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58079495 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8936;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58079497 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.754;LDAF=0.0035;AVGPOST=0.9978;RSQ=0.7555;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58079571 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7063;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58079584 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9468;AVGPOST=0.9996;RSQ=0.9967;ERATE=0.0003;THETA=0.0006;AC=2068;AN=2184 GT:DS:GL:BD 0.94688642 1 1 58079699 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6555;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58079805 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7893;ERATE=0.0008;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58079884 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4658;ERATE=0.0006;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58079909 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58080069 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6200;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58080210 . T TA 45 PASS INDEL;BAVGPOST=0.999;BRSQ=0.671;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4738;ERATE=0.0007;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58080219 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9484;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58080376 . CCTT C 18 PASS INDEL;BAVGPOST=1.000;BRSQ=0.772;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 58080521 rs10563721 CTTCT C 25560 PASS INDEL;BAVGPOST=0.941;BRSQ=0.885;LDAF=0.6897;AVGPOST=0.9437;RSQ=0.9083;ERATE=0.0061;THETA=0.0004;AC=1538;AN=2184 GT:DS:GL:BD 0.70421243 1 1 58080537 . TTTC T 26700 PASS INDEL;BAVGPOST=0.941;BRSQ=0.884;LDAF=0.6895;AVGPOST=0.9279;RSQ=0.8818;ERATE=0.0078;THETA=0.0007;AC=1536;AN=2184 GT:DS:GL:BD 0.70329672 1 1 58080540 rs67355750 C CTTT 2380 PASS INDEL;BAVGPOST=0.584;BRSQ=0.241;LDAF=0.4408;AVGPOST=0.6721;RSQ=0.4149;ERATE=0.0371;THETA=0.0003;AC=865;AN=2184 GT:DS:GL:BD 0.39606228 0 1 58080612 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.550;LDAF=0.0074;AVGPOST=0.9933;RSQ=0.6143;ERATE=0.0006;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58080697 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.944;LDAF=0.4859;AVGPOST=0.9808;RSQ=0.9707;ERATE=0.0012;THETA=0.0008;AC=1070;AN=2184 GT:DS:GL:BD 0.48992673 0 1 58080724 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.928;LDAF=0.8747;AVGPOST=0.9582;RSQ=0.8769;ERATE=0.0055;THETA=0.0007;AC=1936;AN=2184 GT:DS:GL:BD 0.88644689 1 1 58080759 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.822;LDAF=0.0049;AVGPOST=0.9982;RSQ=0.8467;ERATE=0.0006;THETA=0.0018;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58080760 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.663;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5297;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58080910 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58080912 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8802;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58080930 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58080976 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58081090 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5624;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58081231 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58081296 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8519;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58081371 . A AG 6916 PASS INDEL;BAVGPOST=0.703;BRSQ=0.432;LDAF=0.5637;AVGPOST=0.7271;RSQ=0.4956;ERATE=0.0971;THETA=0.0005;AC=1346;AN=2184 GT:DS:GL:BD 0.61630034 1 1 58081384 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58081525 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0141;AVGPOST=0.9989;RSQ=0.9656;ERATE=0.0004;THETA=0.0009;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58081575 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8344;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58081687 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58081923 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58082054 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58082072 . C CT 8120 PASS INDEL;BAVGPOST=0.987;BRSQ=0.983;LDAF=0.2254;AVGPOST=0.9934;RSQ=0.9857;ERATE=0.0004;THETA=0.0008;AC=490;AN=2184 GT:DS:GL:BD 0.22435898 0 1 58082073 rs34459474 T TG 29410 PASS INDEL;BAVGPOST=0.987;BRSQ=0.984;LDAF=0.2263;AVGPOST=0.9926;RSQ=0.9842;ERATE=0.0005;THETA=0.0004;AC=491;AN=2184 GT:DS:GL:BD 0.22481684 0 1 58082149 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0005;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58082163 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7553;ERATE=0.0006;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58082170 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1895;AVGPOST=0.9974;RSQ=0.9927;ERATE=0.0004;THETA=0.0016;AC=413;AN=2184 GT:DS:GL:BD 0.18910256 0 1 58082291 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0210;AVGPOST=0.9992;RSQ=0.9828;ERATE=0.0003;THETA=0.0006;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 58082382 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.680;LDAF=0.0023;AVGPOST=0.9977;RSQ=0.6149;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58082627 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6007;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58082655 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.9456;AVGPOST=0.9993;RSQ=0.9946;ERATE=0.0004;THETA=0.0004;AC=2065;AN=2184 GT:DS:GL:BD 0.94551283 1 1 58082875 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.9115;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58082914 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.5357;ERATE=0.0005;THETA=0.0024;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58082950 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7721;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58082956 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.830;LDAF=0.0139;AVGPOST=0.9957;RSQ=0.8707;ERATE=0.0003;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58082961 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0010;AVGPOST=0.9986;RSQ=0.4579;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58083050 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7796;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58083116 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6872;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58083428 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.846;LDAF=0.0080;AVGPOST=0.9989;RSQ=0.9567;ERATE=0.0003;THETA=0.0011;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58083557 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0003;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58083576 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8839;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58083602 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0097;AVGPOST=0.9996;RSQ=0.9817;ERATE=0.0003;THETA=0.0012;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58083608 . AC A 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5417;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58083632 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3632;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58083715 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6967;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58083739 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0134;AVGPOST=0.9996;RSQ=0.9865;ERATE=0.0003;THETA=0.0011;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 58083779 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0138;AVGPOST=0.9989;RSQ=0.9732;ERATE=0.0003;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 58083891 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.790;LDAF=0.0128;AVGPOST=0.9989;RSQ=0.9710;ERATE=0.0004;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58083959 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.745;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6227;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58083978 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5301;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58084057 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0097;AVGPOST=0.9987;RSQ=0.9491;ERATE=0.0005;THETA=0.0017;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58084162 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.4880;AVGPOST=0.9899;RSQ=0.9863;ERATE=0.0009;THETA=0.0042;AC=1070;AN=2184 GT:DS:GL:BD 0.48992673 0 1 58084373 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.981;LDAF=0.9480;AVGPOST=0.9969;RSQ=0.9792;ERATE=0.0003;THETA=0.0009;AC=2070;AN=2184 GT:DS:GL:BD 0.94780219 1 1 58084415 rs56821171 A AT 45723 PASS INDEL;BAVGPOST=0.985;BRSQ=0.979;LDAF=0.4659;AVGPOST=0.9747;RSQ=0.9653;ERATE=0.0045;THETA=0.0053;AC=1019;AN=2184 GT:DS:GL:BD 0.46657509 0 1 58084433 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0136;AVGPOST=0.9991;RSQ=0.9778;ERATE=0.0003;THETA=0.0113;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 58084445 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5736;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58084489 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5229;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58084652 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7196;ERATE=0.0003;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58084702 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.694;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0059;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58084715 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0102;AVGPOST=0.9994;RSQ=0.9760;ERATE=0.0003;THETA=0.0047;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58084901 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0103;AVGPOST=0.9991;RSQ=0.9626;ERATE=0.0010;THETA=0.0100;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58084929 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0033;AVGPOST=0.9993;RSQ=0.8958;ERATE=0.0004;THETA=0.0038;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58084954 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0004;THETA=0.0114;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58084974 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5235;ERATE=0.0004;THETA=0.0088;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58085010 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0133;AVGPOST=0.9996;RSQ=0.9869;ERATE=0.0003;THETA=0.0165;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 58085216 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0004;THETA=0.0036;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58085244 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.824;LDAF=0.0076;AVGPOST=0.9970;RSQ=0.8333;ERATE=0.0003;THETA=0.0059;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58085248 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.942;LDAF=0.2888;AVGPOST=0.9685;RSQ=0.9444;ERATE=0.0040;THETA=0.0173;AC=628;AN=2184 GT:DS:GL:BD 0.28754580 0 1 58085250 . A AT 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.659;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6246;ERATE=0.0004;THETA=0.0165;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58085304 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9512;ERATE=0.0003;THETA=0.0142;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58085314 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7570;ERATE=0.0006;THETA=0.0070;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58085322 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.959;BRSQ=0.860;LDAF=0.1554;AVGPOST=0.9610;RSQ=0.8902;ERATE=0.0044;THETA=0.0168;AC=322;AN=2184 GT:DS:GL:BD 0.14743590 0 1 58085579 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0044;AVGPOST=0.9993;RSQ=0.9307;ERATE=0.0003;THETA=0.0098;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58085664 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9113;ERATE=0.0005;THETA=0.0050;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58085720 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6777;ERATE=0.0003;THETA=0.0172;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58085780 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.952;LDAF=0.3307;AVGPOST=0.9745;RSQ=0.9626;ERATE=0.0022;THETA=0.0015;AC=719;AN=2184 GT:DS:GL:BD 0.32921246 0 1 58085796 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0017;AVGPOST=0.9979;RSQ=0.5913;ERATE=0.0003;THETA=0.0094;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58085855 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0443;AVGPOST=0.9987;RSQ=0.9885;ERATE=0.0003;THETA=0.0024;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 58085885 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0026;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58085889 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0029;AVGPOST=0.9987;RSQ=0.8236;ERATE=0.0004;THETA=0.0018;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58085911 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0119;AVGPOST=0.9988;RSQ=0.9599;ERATE=0.0003;THETA=0.0035;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 58085927 . C CT 78 PASS INDEL;BAVGPOST=0.999;BRSQ=0.752;LDAF=0.0019;AVGPOST=0.9977;RSQ=0.4766;ERATE=0.0004;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58085986 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0184;AVGPOST=0.9982;RSQ=0.9654;ERATE=0.0004;THETA=0.0034;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 58086030 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8439;ERATE=0.0004;THETA=0.0064;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58086047 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.832;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7157;ERATE=0.0005;THETA=0.0116;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58086199 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9498;ERATE=0.0003;THETA=0.0123;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58086200 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8809;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58086214 . T TA 21 PASS INDEL;BAVGPOST=1.000;BRSQ=0.707;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7813;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58086456 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7571;AVGPOST=0.9984;RSQ=0.9970;ERATE=0.0003;THETA=0.0013;AC=1652;AN=2184 GT:DS:GL:BD 0.75641024 1 1 58086486 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.2656;AVGPOST=0.9970;RSQ=0.9936;ERATE=0.0004;THETA=0.0012;AC=579;AN=2184 GT:DS:GL:BD 0.26510990 0 1 58086518 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58086535 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0041;AVGPOST=0.9999;RSQ=0.9894;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58086551 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8619;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58086673 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.952;BRSQ=0.897;LDAF=0.6895;AVGPOST=0.9357;RSQ=0.8971;ERATE=0.0263;THETA=0.0002;AC=1535;AN=2184 GT:DS:GL:BD 0.70283884 1 1 58086697 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0388;AVGPOST=0.9995;RSQ=0.9948;ERATE=0.0004;THETA=0.0005;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 58086747 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0362;AVGPOST=0.9998;RSQ=0.9973;ERATE=0.0003;THETA=0.0005;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 58086759 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58086809 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5867;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58086844 . A AGT 17813 PASS INDEL;BAVGPOST=0.995;BRSQ=0.970;LDAF=0.0833;AVGPOST=0.9926;RSQ=0.9693;ERATE=0.0030;THETA=0.0007;AC=182;AN=2184 GT:DS:GL:BD 0.08333334 0 1 58086929 . GATT G 2559 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0169;AVGPOST=0.9991;RSQ=0.9808;ERATE=0.0003;THETA=0.0002;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 58087020 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7876;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58087310 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.961;LDAF=0.0220;AVGPOST=0.9972;RSQ=0.9494;ERATE=0.0004;THETA=0.0011;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 58087485 . T TA 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5492;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58087789 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2740;AVGPOST=0.9953;RSQ=0.9919;ERATE=0.0013;THETA=0.0010;AC=597;AN=2184 GT:DS:GL:BD 0.27335164 0 1 58087900 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6996;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58087932 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58087937 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58088165 . CAT C 303 PASS INDEL;BAVGPOST=0.999;BRSQ=0.806;LDAF=0.0026;AVGPOST=0.9974;RSQ=0.5832;ERATE=0.0007;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58088342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8525;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58088396 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9328;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58088402 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0013;AVGPOST=0.9996;RSQ=0.8649;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58088499 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.817;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7999;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58088907 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4910;AVGPOST=0.9901;RSQ=0.9858;ERATE=0.0017;THETA=0.0025;AC=1071;AN=2184 GT:DS:GL:BD 0.49038461 0 1 58088964 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58089048 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.736;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8658;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58089078 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58089089 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0004;AVGPOST=0.9995;RSQ=0.5747;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58089133 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4900;AVGPOST=0.9984;RSQ=0.9978;ERATE=0.0004;THETA=0.0005;AC=1071;AN=2184 GT:DS:GL:BD 0.49038461 0 1 58089224 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0221;AVGPOST=0.9995;RSQ=0.9888;ERATE=0.0003;THETA=0.0002;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 58089310 . TA T 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.781;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.6013;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58089651 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8916;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58089664 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58089719 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0004;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58090017 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7280;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58090093 . TGG T 117 PASS INDEL;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58090121 . GT G 705 PASS INDEL;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0037;AVGPOST=0.9990;RSQ=0.8697;ERATE=0.0005;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58090327 . C CG 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58090329 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0663;AVGPOST=0.9996;RSQ=0.9974;ERATE=0.0003;THETA=0.0009;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 58090412 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.909;LDAF=0.0258;AVGPOST=0.9959;RSQ=0.9437;ERATE=0.0004;THETA=0.0010;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 58090505 . CA C 63 PASS INDEL;BAVGPOST=1.000;BRSQ=0.756;LDAF=0.0022;AVGPOST=0.9980;RSQ=0.6189;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58090551 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.5548;AVGPOST=0.9955;RSQ=0.9928;ERATE=0.0004;THETA=0.0006;AC=1212;AN=2184 GT:DS:GL:BD 0.55494505 1 1 58090554 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6752;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58090654 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8101;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58090692 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0039;AVGPOST=0.9964;RSQ=0.6312;ERATE=0.0011;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58090693 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0045;AVGPOST=0.9993;RSQ=0.9275;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58090699 . TCAA T 408 PASS INDEL;BAVGPOST=0.998;BRSQ=0.711;LDAF=0.0044;AVGPOST=0.9968;RSQ=0.7029;ERATE=0.0007;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58090754 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5395;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58090813 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.826;LDAF=0.0047;AVGPOST=0.9985;RSQ=0.8806;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58090963 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58090970 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0281;AVGPOST=0.9994;RSQ=0.9905;ERATE=0.0003;THETA=0.0007;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 58091137 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9404;ERATE=0.0004;THETA=0.0049;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58091202 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0076;AVGPOST=0.9988;RSQ=0.9329;ERATE=0.0003;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58091255 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5842;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58091331 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0075;AVGPOST=0.9996;RSQ=0.9739;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58091551 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0026;AVGPOST=0.9989;RSQ=0.8142;ERATE=0.0004;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58091578 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.9816;AVGPOST=0.9977;RSQ=0.9546;ERATE=0.0004;THETA=0.0008;AC=2146;AN=2184 GT:DS:GL:BD 0.98260075 1 1 58091583 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.824;LDAF=0.0018;AVGPOST=0.9994;RSQ=0.8570;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58091806 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0038;AVGPOST=0.9994;RSQ=0.9310;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58091852 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7959;ERATE=0.0003;THETA=0.0032;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58091890 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0042;AVGPOST=0.9996;RSQ=0.9596;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58091907 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7727;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58091960 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9148;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58092034 . TAGA T 54 PASS INDEL;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5466;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58092192 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9789;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58092414 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.522;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4532;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58092569 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0084;AVGPOST=0.9997;RSQ=0.9842;ERATE=0.0004;THETA=0.0022;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58092574 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2169;AVGPOST=0.9985;RSQ=0.9962;ERATE=0.0004;THETA=0.0021;AC=472;AN=2184 GT:DS:GL:BD 0.21611722 0 1 58092829 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.863;LDAF=0.0114;AVGPOST=0.9973;RSQ=0.9088;ERATE=0.0004;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58092830 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0078;AVGPOST=0.9998;RSQ=0.9889;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58092835 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0151;AVGPOST=0.9999;RSQ=0.9972;ERATE=0.0003;THETA=0.0007;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58092910 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58093013 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58093020 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0252;AVGPOST=0.9997;RSQ=0.9946;ERATE=0.0003;THETA=0.0006;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 58093029 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0151;AVGPOST=0.9997;RSQ=0.9922;ERATE=0.0003;THETA=0.0007;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58093163 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0156;AVGPOST=0.9988;RSQ=0.9690;ERATE=0.0004;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58093186 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6777;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58093228 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9212;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58093366 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0152;AVGPOST=0.9998;RSQ=0.9949;ERATE=0.0003;THETA=0.0005;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58093546 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.7652;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58093564 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0041;AVGPOST=0.9999;RSQ=0.9845;ERATE=0.0003;THETA=0.0020;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58093594 rs71796252 ACTT A 33167 PASS INDEL;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2167;AVGPOST=0.9980;RSQ=0.9957;ERATE=0.0005;THETA=0.0005;AC=473;AN=2184 GT:DS:GL:BD 0.21657509 0 1 58093748 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6777;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58093903 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.715;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8316;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58093987 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5290;AVGPOST=0.9973;RSQ=0.9958;ERATE=0.0006;THETA=0.0002;AC=1155;AN=2184 GT:DS:GL:BD 0.52884614 1 1 58094064 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.4857;AVGPOST=0.9987;RSQ=0.9980;ERATE=0.0004;THETA=0.0003;AC=1061;AN=2184 GT:DS:GL:BD 0.48580587 0 1 58094289 rs67050729 A AC 103142 PASS INDEL;BAVGPOST=0.998;BRSQ=0.942;LDAF=0.9791;AVGPOST=0.9969;RSQ=0.9455;ERATE=0.0005;THETA=0.0005;AC=2141;AN=2184 GT:DS:GL:BD 0.98031133 1 1 58094304 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.3880;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58094475 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.753;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8379;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58094811 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2173;AVGPOST=0.9994;RSQ=0.9985;ERATE=0.0004;THETA=0.0004;AC=473;AN=2184 GT:DS:GL:BD 0.21657509 0 1 58094819 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8761;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58094832 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58094931 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9488;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58094966 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8757;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58095007 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6277;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58095017 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58095157 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5444;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58095263 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0049;AVGPOST=0.9994;RSQ=0.9433;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58095341 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=0.9998;RSQ=0.9626;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58095471 . CCA C 141 PASS INDEL;BAVGPOST=0.999;BRSQ=0.541;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5545;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58095512 . AG A 144 PASS INDEL;BAVGPOST=0.997;BRSQ=0.597;LDAF=0.0065;AVGPOST=0.9943;RSQ=0.6293;ERATE=0.0015;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58095515 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.875;LDAF=0.0081;AVGPOST=0.9980;RSQ=0.9042;ERATE=0.0005;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58095644 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.938;LDAF=0.0141;AVGPOST=0.9992;RSQ=0.9784;ERATE=0.0003;THETA=0.0002;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58095791 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2012;AVGPOST=0.9980;RSQ=0.9950;ERATE=0.0006;THETA=0.0004;AC=438;AN=2184 GT:DS:GL:BD 0.20054945 0 1 58096176 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2186;AVGPOST=0.9984;RSQ=0.9965;ERATE=0.0003;THETA=0.0004;AC=475;AN=2184 GT:DS:GL:BD 0.21749084 0 1 58096189 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.980;LDAF=0.0155;AVGPOST=0.9987;RSQ=0.9740;ERATE=0.0003;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58096362 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0088;AVGPOST=0.9979;RSQ=0.8990;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58096379 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5282;AVGPOST=0.9989;RSQ=0.9980;ERATE=0.0005;THETA=0.0022;AC=1154;AN=2184 GT:DS:GL:BD 0.52838826 1 1 58096541 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8757;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58096769 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.998;LDAF=0.7560;AVGPOST=0.9978;RSQ=0.9953;ERATE=0.0006;THETA=0.0006;AC=1650;AN=2184 GT:DS:GL:BD 0.75549453 1 1 58096770 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58096877 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0075;AVGPOST=0.9996;RSQ=0.9765;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58097024 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.5278;AVGPOST=0.9983;RSQ=0.9969;ERATE=0.0007;THETA=0.0004;AC=1153;AN=2184 GT:DS:GL:BD 0.52793038 1 1 58097154 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.5239;AVGPOST=0.9915;RSQ=0.9887;ERATE=0.0006;THETA=0.0006;AC=1147;AN=2184 GT:DS:GL:BD 0.52518314 1 1 58097177 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.741;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5459;ERATE=0.0007;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58097193 . CTT C 337 PASS INDEL;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0028;AVGPOST=0.9988;RSQ=0.8321;ERATE=0.0005;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58097246 rs34769169 TA T 4219 PASS INDEL;BAVGPOST=0.994;BRSQ=0.914;LDAF=0.0385;AVGPOST=0.9941;RSQ=0.9394;ERATE=0.0004;THETA=0.0004;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 58097251 rs66635241 TG T 4813 PASS INDEL;BAVGPOST=0.979;BRSQ=0.783;LDAF=0.0613;AVGPOST=0.9606;RSQ=0.7273;ERATE=0.0086;THETA=0.0003;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 58097252 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.7641;AVGPOST=0.9963;RSQ=0.9923;ERATE=0.0011;THETA=0.0003;AC=1667;AN=2184 GT:DS:GL:BD 0.76327837 1 1 58097387 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.758;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6160;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58097410 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6720;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58097438 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0025;AVGPOST=0.9989;RSQ=0.8588;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58097534 . C CT 178 PASS INDEL;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0034;AVGPOST=0.9961;RSQ=0.5523;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58097583 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7985;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58097680 . CA C 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8118;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58097733 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.728;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7494;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58097794 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5405;AVGPOST=0.9980;RSQ=0.9966;ERATE=0.0005;THETA=0.0003;AC=1181;AN=2184 GT:DS:GL:BD 0.54075092 1 1 58097887 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.949;LDAF=0.0375;AVGPOST=0.9963;RSQ=0.9598;ERATE=0.0005;THETA=0.0002;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 58097977 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.4858;AVGPOST=0.9971;RSQ=0.9955;ERATE=0.0007;THETA=0.0005;AC=1060;AN=2184 GT:DS:GL:BD 0.48534799 0 1 58098011 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58098062 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9188;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58098114 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9996;RSQ=0.9672;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58098152 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2187;AVGPOST=0.9979;RSQ=0.9951;ERATE=0.0005;THETA=0.0007;AC=476;AN=2184 GT:DS:GL:BD 0.21794872 0 1 58098173 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58098293 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0038;AVGPOST=0.9990;RSQ=0.8893;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58098313 . TGAG T 51 PASS INDEL;BAVGPOST=0.999;BRSQ=0.824;LDAF=0.0040;AVGPOST=0.9965;RSQ=0.6495;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58098578 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58098638 . GAT G 251 PASS INDEL;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7051;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58098684 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58098710 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0041;AVGPOST=0.9995;RSQ=0.9479;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58098743 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0048;AVGPOST=0.9987;RSQ=0.8935;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58098831 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0018;AVGPOST=0.9994;RSQ=0.8520;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58098949 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5426;AVGPOST=0.9935;RSQ=0.9900;ERATE=0.0027;THETA=0.0005;AC=1185;AN=2184 GT:DS:GL:BD 0.54258239 1 1 58099025 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0080;AVGPOST=0.9995;RSQ=0.9704;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58099034 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8047;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58099123 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2187;AVGPOST=0.9987;RSQ=0.9970;ERATE=0.0004;THETA=0.0003;AC=477;AN=2184 GT:DS:GL:BD 0.21840659 0 1 58099137 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7961;AVGPOST=0.9978;RSQ=0.9947;ERATE=0.0004;THETA=0.0004;AC=1738;AN=2184 GT:DS:GL:BD 0.79578757 1 1 58099210 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58099313 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0029;AVGPOST=0.9984;RSQ=0.7477;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58099385 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0223;AVGPOST=0.9990;RSQ=0.9802;ERATE=0.0003;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 58099455 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8160;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58099554 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0043;AVGPOST=0.9985;RSQ=0.8579;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58099573 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=0.9999;RSQ=0.9916;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58099639 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5548;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58099667 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58099707 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.5383;AVGPOST=0.9976;RSQ=0.9964;ERATE=0.0004;THETA=0.0004;AC=1177;AN=2184 GT:DS:GL:BD 0.53891939 1 1 58099783 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7665;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58099913 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0008;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58099942 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.675;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9035;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58100070 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.772;LDAF=0.0068;AVGPOST=0.9979;RSQ=0.8783;ERATE=0.0005;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58100088 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0075;AVGPOST=0.9995;RSQ=0.9709;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58100195 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2181;AVGPOST=0.9973;RSQ=0.9940;ERATE=0.0008;THETA=0.0004;AC=475;AN=2184 GT:DS:GL:BD 0.21749084 0 1 58100365 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7177;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58100418 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8600;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58100458 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6745;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58100470 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.5634;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58100627 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0069;AVGPOST=0.9991;RSQ=0.9443;ERATE=0.0003;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58100629 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0018;AVGPOST=0.9994;RSQ=0.8698;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58100630 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.910;LDAF=0.0059;AVGPOST=0.9988;RSQ=0.9095;ERATE=0.0007;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58100631 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2016;AVGPOST=0.9989;RSQ=0.9976;ERATE=0.0003;THETA=0.0006;AC=438;AN=2184 GT:DS:GL:BD 0.20054945 0 1 58100678 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7577;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58100694 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5372;AVGPOST=0.9965;RSQ=0.9944;ERATE=0.0008;THETA=0.0005;AC=1174;AN=2184 GT:DS:GL:BD 0.53754580 1 1 58100701 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9160;ERATE=0.0003;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58100792 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58100793 . TG T 39 PASS INDEL;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58100797 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58100887 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9915;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58101088 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.5830;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58101110 . GC G 245 PASS INDEL;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0024;AVGPOST=0.9985;RSQ=0.7403;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58101152 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4793;ERATE=0.0005;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58101205 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5296;AVGPOST=0.9970;RSQ=0.9958;ERATE=0.0004;THETA=0.0006;AC=1158;AN=2184 GT:DS:GL:BD 0.53021979 1 1 58101298 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0158;AVGPOST=0.9985;RSQ=0.9593;ERATE=0.0004;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58101352 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5025;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58101459 . CTCTAA C 680 PASS INDEL;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0084;AVGPOST=0.9989;RSQ=0.9566;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58101505 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.597;LDAF=0.0178;AVGPOST=0.9870;RSQ=0.7164;ERATE=0.0008;THETA=0.0048;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 58101614 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.945;LDAF=0.5139;AVGPOST=0.9853;RSQ=0.9784;ERATE=0.0009;THETA=0.0004;AC=1128;AN=2184 GT:DS:GL:BD 0.51648355 1 1 58101641 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.868;LDAF=0.0125;AVGPOST=0.9942;RSQ=0.7937;ERATE=0.0006;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58101726 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0087;AVGPOST=0.9991;RSQ=0.9561;ERATE=0.0004;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58101851 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5385;AVGPOST=0.9980;RSQ=0.9967;ERATE=0.0004;THETA=0.0002;AC=1176;AN=2184 GT:DS:GL:BD 0.53846157 1 1 58101999 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0059;AVGPOST=0.9991;RSQ=0.9364;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58102001 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0041;AVGPOST=0.9978;RSQ=0.8084;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58102043 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0029;AVGPOST=0.9985;RSQ=0.7818;ERATE=0.0006;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58102172 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.7973;AVGPOST=0.9984;RSQ=0.9964;ERATE=0.0003;THETA=0.0004;AC=1741;AN=2184 GT:DS:GL:BD 0.79716116 1 1 58102192 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58102250 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.9008;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58102277 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=0.9999;RSQ=0.9943;ERATE=0.0003;THETA=0.0016;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58102372 . AC A 116 PASS INDEL;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5470;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58102486 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=0.9999;RSQ=0.9910;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58102540 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5277;AVGPOST=0.9974;RSQ=0.9958;ERATE=0.0005;THETA=0.0003;AC=1154;AN=2184 GT:DS:GL:BD 0.52838826 1 1 58102545 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0043;AVGPOST=0.9994;RSQ=0.9463;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58102590 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.975;LDAF=0.5159;AVGPOST=0.9816;RSQ=0.9733;ERATE=0.0063;THETA=0.0005;AC=1130;AN=2184 GT:DS:GL:BD 0.51739925 1 1 58102595 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7548;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58102829 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6023;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58103010 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2331;AVGPOST=0.9979;RSQ=0.9961;ERATE=0.0003;THETA=0.0005;AC=506;AN=2184 GT:DS:GL:BD 0.23168498 0 1 58103079 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8818;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58103125 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.7811;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58103258 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0042;AVGPOST=0.9994;RSQ=0.9391;ERATE=0.0003;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58103368 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0060;AVGPOST=0.9996;RSQ=0.9735;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58103452 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6793;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58103470 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8526;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58103473 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58103504 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.869;LDAF=0.0071;AVGPOST=0.9989;RSQ=0.9382;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58103581 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6350;ERATE=0.0003;THETA=0.0039;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58103639 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9197;ERATE=0.0003;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58103643 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7115;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58103673 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2198;AVGPOST=0.9958;RSQ=0.9913;ERATE=0.0007;THETA=0.0002;AC=479;AN=2184 GT:DS:GL:BD 0.21932234 0 1 58103786 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.644;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6966;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58103929 . T TG 18 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6246;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58104062 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0198;AVGPOST=0.9996;RSQ=0.9918;ERATE=0.0003;THETA=0.0003;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 58104085 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58104110 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7982;AVGPOST=0.9976;RSQ=0.9938;ERATE=0.0005;THETA=0.0002;AC=1742;AN=2184 GT:DS:GL:BD 0.79761904 1 1 58104150 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58104250 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.8139;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58104371 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0082;AVGPOST=0.9987;RSQ=0.9369;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58104460 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58104464 rs60244828 TC T 2270 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0151;AVGPOST=0.9997;RSQ=0.9918;ERATE=0.0003;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58104534 . ATG A 44 PASS INDEL;BAVGPOST=0.991;BRSQ=0.588;LDAF=0.0205;AVGPOST=0.9752;RSQ=0.5022;ERATE=0.0085;THETA=0.0002;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58104690 . GAACTTTAGTAAAT G 368 PASS INDEL;BAVGPOST=0.849;BRSQ=0.100;LDAF=0.1153;AVGPOST=0.8496;RSQ=0.4270;ERATE=0.0054;THETA=0.0005;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 58104925 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.975;LDAF=0.2443;AVGPOST=0.9846;RSQ=0.9686;ERATE=0.0015;THETA=0.0005;AC=523;AN=2184 GT:DS:GL:BD 0.23946886 0 1 58104944 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.497;LDAF=0.0049;AVGPOST=0.9938;RSQ=0.4939;ERATE=0.0011;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58104967 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0034;AVGPOST=0.9979;RSQ=0.6976;ERATE=0.0007;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58104975 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.756;LDAF=0.0123;AVGPOST=0.9980;RSQ=0.9269;ERATE=0.0005;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58105034 rs66552646 T TAA 17621 PASS INDEL;BAVGPOST=0.831;BRSQ=0.526;LDAF=0.2796;AVGPOST=0.8040;RSQ=0.5025;ERATE=0.0734;THETA=0.0003;AC=451;AN=2184 GT:DS:GL:BD 0.20650183 0 1 58105075 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.808;LDAF=0.0272;AVGPOST=0.9835;RSQ=0.7506;ERATE=0.0028;THETA=0.0004;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 58105105 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0047;AVGPOST=0.9978;RSQ=0.8219;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58105158 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0025;AVGPOST=0.9994;RSQ=0.8882;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58105196 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58105213 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5433;AVGPOST=0.9964;RSQ=0.9947;ERATE=0.0005;THETA=0.0005;AC=1188;AN=2184 GT:DS:GL:BD 0.54395604 1 1 58105323 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.757;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8720;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58105332 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0151;AVGPOST=0.9996;RSQ=0.9892;ERATE=0.0003;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58105469 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9643;ERATE=0.0003;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58105495 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8714;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58105526 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7968;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58105607 . A AAG 128 PASS INDEL;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0029;AVGPOST=0.9979;RSQ=0.7129;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58105652 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58105676 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.912;LDAF=0.0218;AVGPOST=0.9957;RSQ=0.9209;ERATE=0.0003;THETA=0.0004;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 58105695 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58105811 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0152;AVGPOST=0.9999;RSQ=0.9958;ERATE=0.0003;THETA=0.0016;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58105834 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58105835 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9375;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58105903 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0084;AVGPOST=0.9997;RSQ=0.9842;ERATE=0.0003;THETA=0.0012;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58105923 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58106017 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0159;AVGPOST=0.9993;RSQ=0.9841;ERATE=0.0003;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58106107 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0048;AVGPOST=0.9984;RSQ=0.8666;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58106164 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0198;AVGPOST=0.9996;RSQ=0.9917;ERATE=0.0004;THETA=0.0002;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 58106221 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0062;AVGPOST=0.9995;RSQ=0.9681;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58106268 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0075;AVGPOST=0.9995;RSQ=0.9674;ERATE=0.0003;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58106321 . AG A 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4757;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58106514 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5473;AVGPOST=0.9993;RSQ=0.9987;ERATE=0.0004;THETA=0.0003;AC=1195;AN=2184 GT:DS:GL:BD 0.54716116 1 1 58106665 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.858;LDAF=0.0041;AVGPOST=0.9985;RSQ=0.8819;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58106770 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8709;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58106826 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.642;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5030;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58106887 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.5471;AVGPOST=0.9980;RSQ=0.9965;ERATE=0.0004;THETA=0.0006;AC=1195;AN=2184 GT:DS:GL:BD 0.54716116 1 1 58107006 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0159;AVGPOST=0.9994;RSQ=0.9829;ERATE=0.0003;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58107051 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.908;BRSQ=0.748;LDAF=0.2577;AVGPOST=0.8745;RSQ=0.7266;ERATE=0.0530;THETA=0.0013;AC=514;AN=2184 GT:DS:GL:BD 0.23534799 0 1 58107263 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.987;LDAF=0.2684;AVGPOST=0.9986;RSQ=0.9971;ERATE=0.0004;THETA=0.0008;AC=586;AN=2184 GT:DS:GL:BD 0.26831502 0 1 58107310 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0064;AVGPOST=0.9955;RSQ=0.7450;ERATE=0.0005;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58107312 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0093;AVGPOST=0.9991;RSQ=0.9576;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58107343 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58107358 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0050;AVGPOST=0.9983;RSQ=0.8625;ERATE=0.0007;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58107461 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8012;AVGPOST=0.9992;RSQ=0.9978;ERATE=0.0003;THETA=0.0004;AC=1749;AN=2184 GT:DS:GL:BD 0.80082417 1 1 58107470 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0018;AVGPOST=0.9993;RSQ=0.8306;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58107560 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6228;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58107604 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7841;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58107712 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0232;AVGPOST=0.9994;RSQ=0.9873;ERATE=0.0003;THETA=0.0002;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 58107742 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6491;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58107795 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.8995;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58107805 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58107837 . G GA 503 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0038;AVGPOST=0.9971;RSQ=0.7427;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58107913 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2589;AVGPOST=0.9992;RSQ=0.9984;ERATE=0.0004;THETA=0.0005;AC=564;AN=2184 GT:DS:GL:BD 0.25824177 0 1 58107914 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8664;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58107995 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2769;AVGPOST=0.9985;RSQ=0.9974;ERATE=0.0004;THETA=0.0004;AC=603;AN=2184 GT:DS:GL:BD 0.27609891 0 1 58108007 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58108044 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.4110;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58108230 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0108;AVGPOST=0.9980;RSQ=0.9346;ERATE=0.0004;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58108237 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4872;AVGPOST=0.9976;RSQ=0.9968;ERATE=0.0004;THETA=0.0005;AC=1063;AN=2184 GT:DS:GL:BD 0.48672161 0 1 58108331 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7999;AVGPOST=0.9958;RSQ=0.9905;ERATE=0.0009;THETA=0.0002;AC=1746;AN=2184 GT:DS:GL:BD 0.79945058 1 1 58108415 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0037;AVGPOST=0.9983;RSQ=0.8071;ERATE=0.0005;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58108472 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.637;LDAF=0.0021;AVGPOST=0.9991;RSQ=0.8397;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58108514 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0030;AVGPOST=0.9993;RSQ=0.9111;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58108567 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0036;AVGPOST=0.9977;RSQ=0.7553;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58108571 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.874;LDAF=0.0076;AVGPOST=0.9990;RSQ=0.9422;ERATE=0.0004;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58108645 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.5224;AVGPOST=0.9987;RSQ=0.9977;ERATE=0.0004;THETA=0.0005;AC=1141;AN=2184 GT:DS:GL:BD 0.52243590 1 1 58108684 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2608;AVGPOST=0.9994;RSQ=0.9987;ERATE=0.0003;THETA=0.0004;AC=569;AN=2184 GT:DS:GL:BD 0.26053113 0 1 58108694 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2598;AVGPOST=0.9988;RSQ=0.9976;ERATE=0.0003;THETA=0.0003;AC=566;AN=2184 GT:DS:GL:BD 0.25915751 0 1 58108735 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7618;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58108774 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2768;AVGPOST=0.9987;RSQ=0.9973;ERATE=0.0006;THETA=0.0004;AC=603;AN=2184 GT:DS:GL:BD 0.27609891 0 1 58108784 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8495;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58108801 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.743;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58108804 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0170;AVGPOST=0.9977;RSQ=0.9493;ERATE=0.0004;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 58108838 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.743;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8130;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58108888 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58109067 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5938;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58109129 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7279;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58109163 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2198;AVGPOST=0.9984;RSQ=0.9966;ERATE=0.0004;THETA=0.0007;AC=479;AN=2184 GT:DS:GL:BD 0.21932234 0 1 58109310 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2611;AVGPOST=0.9955;RSQ=0.9918;ERATE=0.0005;THETA=0.0003;AC=571;AN=2184 GT:DS:GL:BD 0.26144689 0 1 58109381 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0083;AVGPOST=0.9990;RSQ=0.9492;ERATE=0.0004;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58109382 . A AT 292 PASS INDEL;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0030;AVGPOST=0.9976;RSQ=0.6418;ERATE=0.0007;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58109618 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.798;LDAF=0.0055;AVGPOST=0.9969;RSQ=0.7619;ERATE=0.0006;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58109684 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58109756 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2587;AVGPOST=0.9988;RSQ=0.9974;ERATE=0.0006;THETA=0.0006;AC=564;AN=2184 GT:DS:GL:BD 0.25824177 0 1 58109829 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4867;AVGPOST=0.9973;RSQ=0.9958;ERATE=0.0004;THETA=0.0006;AC=1063;AN=2184 GT:DS:GL:BD 0.48672161 0 1 58109888 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2613;AVGPOST=0.9988;RSQ=0.9977;ERATE=0.0004;THETA=0.0013;AC=570;AN=2184 GT:DS:GL:BD 0.26098901 0 1 58109892 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.9124;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58109933 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.9114;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58109969 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0271;AVGPOST=0.9997;RSQ=0.9950;ERATE=0.0003;THETA=0.0003;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 58110052 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2186;AVGPOST=0.9963;RSQ=0.9921;ERATE=0.0007;THETA=0.0005;AC=474;AN=2184 GT:DS:GL:BD 0.21703297 0 1 58110228 . C CAT 19632 PASS INDEL;BAVGPOST=0.973;BRSQ=0.932;LDAF=0.2407;AVGPOST=0.9762;RSQ=0.9524;ERATE=0.0039;THETA=0.0004;AC=520;AN=2184 GT:DS:GL:BD 0.23809524 0 1 58110304 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.491;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.5816;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58110417 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2591;AVGPOST=0.9973;RSQ=0.9944;ERATE=0.0007;THETA=0.0005;AC=566;AN=2184 GT:DS:GL:BD 0.25915751 0 1 58110445 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58110485 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0073;AVGPOST=0.9988;RSQ=0.9312;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58110551 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0152;AVGPOST=0.9997;RSQ=0.9903;ERATE=0.0003;THETA=0.0009;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58110589 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7811;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58110614 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58110755 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0152;AVGPOST=0.9997;RSQ=0.9903;ERATE=0.0003;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58110859 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5455;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58110882 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0027;AVGPOST=0.9990;RSQ=0.8776;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58111025 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58111045 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.2758;AVGPOST=0.9992;RSQ=0.9982;ERATE=0.0004;THETA=0.0004;AC=601;AN=2184 GT:DS:GL:BD 0.27518314 0 1 58111103 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4936;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58111319 . TAA T 880 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58111337 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7227;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58111340 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8823;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58111407 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.6411;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58111522 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.758;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8559;ERATE=0.0006;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58111721 rs5774364 GA G 23346 PASS INDEL;BAVGPOST=0.995;BRSQ=0.987;LDAF=0.2557;AVGPOST=0.9966;RSQ=0.9930;ERATE=0.0012;THETA=0.0006;AC=559;AN=2184 GT:DS:GL:BD 0.25595239 0 1 58111727 . AT A 100 PASS INDEL;BAVGPOST=0.870;BRSQ=0.363;LDAF=0.1014;AVGPOST=0.8986;RSQ=0.5898;ERATE=0.0041;THETA=0.0004;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 58111877 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0152;AVGPOST=0.9995;RSQ=0.9863;ERATE=0.0003;THETA=0.0010;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58112063 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58112064 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0082;AVGPOST=0.9991;RSQ=0.9647;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58112137 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58112505 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0161;AVGPOST=0.9999;RSQ=0.9963;ERATE=0.0003;THETA=0.0006;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 58112599 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58112625 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8117;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58112689 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58112706 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58112796 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.797;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9405;ERATE=0.0004;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58112864 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2608;AVGPOST=0.9989;RSQ=0.9976;ERATE=0.0005;THETA=0.0003;AC=568;AN=2184 GT:DS:GL:BD 0.26007327 0 1 58112872 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8143;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58112935 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9914;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58112946 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0038;AVGPOST=0.9989;RSQ=0.9068;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58112981 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58113027 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6464;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58113071 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.988;LDAF=0.2183;AVGPOST=0.9980;RSQ=0.9953;ERATE=0.0005;THETA=0.0007;AC=476;AN=2184 GT:DS:GL:BD 0.21794872 0 1 58113078 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9280;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58113096 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6373;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58113110 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58113155 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9354;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58113156 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8063;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58113180 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6461;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58113255 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58113279 . A AC 13 PASS INDEL;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.5665;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58113286 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0233;AVGPOST=0.9991;RSQ=0.9859;ERATE=0.0003;THETA=0.0004;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 58113319 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58113364 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58113403 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9321;ERATE=0.0004;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58113412 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6586;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58113429 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0271;AVGPOST=0.9998;RSQ=0.9969;ERATE=0.0003;THETA=0.0004;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 58113511 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8091;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58113546 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8142;ERATE=0.0005;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58113630 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58113785 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0029;AVGPOST=0.9966;RSQ=0.5731;ERATE=0.0003;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58113821 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6872;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58113832 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7739;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58113889 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58113966 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2766;AVGPOST=0.9962;RSQ=0.9928;ERATE=0.0007;THETA=0.0005;AC=602;AN=2184 GT:DS:GL:BD 0.27564102 0 1 58114087 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.6140;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58114280 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7807;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58114309 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58114322 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6182;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58114536 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.6000;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58114664 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.2190;AVGPOST=0.9982;RSQ=0.9962;ERATE=0.0003;THETA=0.0002;AC=477;AN=2184 GT:DS:GL:BD 0.21840659 0 1 58114672 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9910;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58114673 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6034;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58114719 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58114727 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.857;LDAF=0.0126;AVGPOST=0.9966;RSQ=0.8996;ERATE=0.0003;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58114769 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0152;AVGPOST=0.9998;RSQ=0.9946;ERATE=0.0003;THETA=0.0005;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58115093 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7079;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58115131 . GAT G 614 PASS INDEL;BAVGPOST=0.998;BRSQ=0.817;LDAF=0.0071;AVGPOST=0.9972;RSQ=0.8371;ERATE=0.0005;THETA=0.0013;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58115174 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.759;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.8974;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58115195 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.835;LDAF=0.0021;AVGPOST=0.9983;RSQ=0.6848;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58115222 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9302;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58115283 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.8031;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58115492 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.635;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.6547;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58115610 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58115764 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6311;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58115810 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0152;AVGPOST=0.9997;RSQ=0.9917;ERATE=0.0003;THETA=0.0005;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58115813 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9597;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58115878 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.767;LDAF=0.0022;AVGPOST=0.9975;RSQ=0.5100;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58115967 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.619;LDAF=0.0043;AVGPOST=0.9975;RSQ=0.7791;ERATE=0.0007;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58115976 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7802;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58115989 rs67256413 A AT 28898 PASS INDEL;BAVGPOST=0.987;BRSQ=0.979;LDAF=0.4833;AVGPOST=0.9866;RSQ=0.9806;ERATE=0.0011;THETA=0.0008;AC=1060;AN=2184 GT:DS:GL:BD 0.48534799 0 1 58116071 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0033;AVGPOST=0.9981;RSQ=0.8060;ERATE=0.0003;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58116118 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0026;AVGPOST=0.9985;RSQ=0.7990;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58116136 rs67760656 T TA 54822 PASS INDEL;BAVGPOST=0.985;BRSQ=0.957;LDAF=0.7722;AVGPOST=0.9565;RSQ=0.9005;ERATE=0.0112;THETA=0.0030;AC=1702;AN=2184 GT:DS:GL:BD 0.77930403 1 1 58116161 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.749;LDAF=0.0020;AVGPOST=0.9972;RSQ=0.4840;ERATE=0.0006;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58116184 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0085;AVGPOST=0.9970;RSQ=0.8504;ERATE=0.0006;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58116188 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.883;LDAF=0.0155;AVGPOST=0.9991;RSQ=0.9746;ERATE=0.0004;THETA=0.0008;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58116195 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.754;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4259;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58116423 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0075;AVGPOST=0.9996;RSQ=0.9765;ERATE=0.0004;THETA=0.0039;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58116430 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0032;AVGPOST=0.9989;RSQ=0.8703;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58116432 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.8085;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58116631 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9346;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58116669 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58116835 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0168;AVGPOST=0.9991;RSQ=0.9774;ERATE=0.0004;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 58116974 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0014;AVGPOST=0.9994;RSQ=0.8779;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58117013 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7550;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58117165 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.977;LDAF=0.0340;AVGPOST=0.9979;RSQ=0.9772;ERATE=0.0005;THETA=0.0009;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 58117257 . T TG 9 PASS INDEL;BAVGPOST=0.999;BRSQ=0.641;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.4508;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58117315 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0047;AVGPOST=0.9985;RSQ=0.8535;ERATE=0.0006;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58117340 rs112756751 A AC 1834 PASS INDEL;BAVGPOST=0.851;BRSQ=0.460;LDAF=0.1770;AVGPOST=0.8290;RSQ=0.5449;ERATE=0.0239;THETA=0.0006;AC=263;AN=2184 GT:DS:GL:BD 0.12042125 0 1 58117341 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.982;LDAF=0.4827;AVGPOST=0.9898;RSQ=0.9853;ERATE=0.0016;THETA=0.0004;AC=1056;AN=2184 GT:DS:GL:BD 0.48351648 0 1 58117348 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.980;LDAF=0.2207;AVGPOST=0.9964;RSQ=0.9920;ERATE=0.0006;THETA=0.0003;AC=483;AN=2184 GT:DS:GL:BD 0.22115384 0 1 58117412 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6547;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58117447 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8096;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58117667 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0151;AVGPOST=0.9996;RSQ=0.9901;ERATE=0.0003;THETA=0.0004;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58117763 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8575;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58117891 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0280;AVGPOST=0.9995;RSQ=0.9919;ERATE=0.0004;THETA=0.0007;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 58117899 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2341;AVGPOST=0.9983;RSQ=0.9964;ERATE=0.0004;THETA=0.0003;AC=510;AN=2184 GT:DS:GL:BD 0.23351648 0 1 58118018 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58118020 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0087;AVGPOST=0.9990;RSQ=0.9537;ERATE=0.0003;THETA=0.0008;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58118080 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.4846;AVGPOST=0.9959;RSQ=0.9937;ERATE=0.0011;THETA=0.0005;AC=1057;AN=2184 GT:DS:GL:BD 0.48397437 0 1 58118133 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5709;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58118145 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0018;AVGPOST=0.9985;RSQ=0.6359;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58118166 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5963;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58118171 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0032;AVGPOST=0.9986;RSQ=0.8005;ERATE=0.0006;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58118334 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0282;AVGPOST=0.9992;RSQ=0.9876;ERATE=0.0004;THETA=0.0002;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 58118389 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0018;AVGPOST=0.9977;RSQ=0.5093;ERATE=0.0003;THETA=0.0032;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58118485 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0213;AVGPOST=0.9989;RSQ=0.9786;ERATE=0.0004;THETA=0.0004;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 58118510 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.847;LDAF=0.0069;AVGPOST=0.9970;RSQ=0.8149;ERATE=0.0008;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58118703 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0074;AVGPOST=0.9988;RSQ=0.9404;ERATE=0.0004;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58118789 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0075;AVGPOST=0.9996;RSQ=0.9739;ERATE=0.0003;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58118847 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7384;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58118901 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0049;AVGPOST=0.9974;RSQ=0.8204;ERATE=0.0006;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58118923 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0154;AVGPOST=0.9995;RSQ=0.9835;ERATE=0.0003;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58118979 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0220;AVGPOST=0.9989;RSQ=0.9774;ERATE=0.0005;THETA=0.0007;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 58119112 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58119199 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58119224 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58119292 . A AT 56 PASS INDEL;BAVGPOST=0.978;BRSQ=0.470;LDAF=0.0396;AVGPOST=0.9509;RSQ=0.4804;ERATE=0.0124;THETA=0.0004;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 58119578 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0156;AVGPOST=0.9989;RSQ=0.9685;ERATE=0.0004;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58119619 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9890;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58119622 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7189;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58119696 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58119837 . A AT 100 PASS INDEL;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4855;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58119876 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.563;LDAF=0.0031;AVGPOST=0.9994;RSQ=0.9130;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58119916 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.840;LDAF=0.0054;AVGPOST=0.9977;RSQ=0.8462;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58119950 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58119974 . G GA 188 PASS INDEL;BAVGPOST=0.999;BRSQ=0.684;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.4290;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58120060 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0032;AVGPOST=0.9991;RSQ=0.8766;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58120098 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=0.9991;RSQ=0.9624;ERATE=0.0003;THETA=0.0014;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58120233 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0159;AVGPOST=0.9987;RSQ=0.9697;ERATE=0.0003;THETA=0.0008;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 58120310 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5432;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58120324 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.698;LDAF=0.0023;AVGPOST=0.9986;RSQ=0.7606;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58120381 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.7918;AVGPOST=0.9913;RSQ=0.9804;ERATE=0.0009;THETA=0.0004;AC=1731;AN=2184 GT:DS:GL:BD 0.79258239 1 1 58120383 rs112849970 A ACT 20303 PASS INDEL;BAVGPOST=0.965;BRSQ=0.919;LDAF=0.2601;AVGPOST=0.9893;RSQ=0.9786;ERATE=0.0011;THETA=0.0005;AC=573;AN=2184 GT:DS:GL:BD 0.26236263 0 1 58120419 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.684;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8025;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58120449 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2656;AVGPOST=0.9978;RSQ=0.9952;ERATE=0.0006;THETA=0.0002;AC=578;AN=2184 GT:DS:GL:BD 0.26465201 0 1 58120489 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2432;AVGPOST=0.9947;RSQ=0.9909;ERATE=0.0005;THETA=0.0004;AC=531;AN=2184 GT:DS:GL:BD 0.24313186 0 1 58120495 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.6778;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58120559 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2649;AVGPOST=0.9973;RSQ=0.9946;ERATE=0.0006;THETA=0.0008;AC=576;AN=2184 GT:DS:GL:BD 0.26373628 0 1 58120685 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7583;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58120705 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0095;AVGPOST=0.9978;RSQ=0.9188;ERATE=0.0005;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58120761 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7607;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58120830 . TA T 268 PASS INDEL;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6141;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58120837 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58120899 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0340;AVGPOST=0.9997;RSQ=0.9967;ERATE=0.0003;THETA=0.0004;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 58120903 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.790;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8120;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58120967 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9880;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58121100 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2632;AVGPOST=0.9989;RSQ=0.9977;ERATE=0.0004;THETA=0.0003;AC=575;AN=2184 GT:DS:GL:BD 0.26327839 0 1 58121130 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58121256 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8495;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58121257 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58121268 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58121292 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9801;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58121330 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6879;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58121347 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58121368 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9599;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58121436 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2806;AVGPOST=0.9961;RSQ=0.9930;ERATE=0.0008;THETA=0.0004;AC=610;AN=2184 GT:DS:GL:BD 0.27930403 0 1 58121454 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0026;AVGPOST=0.9988;RSQ=0.8051;ERATE=0.0006;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58121457 . TAG T 154 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9969;RSQ=0.6179;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58121522 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0219;AVGPOST=0.9990;RSQ=0.9803;ERATE=0.0004;THETA=0.0002;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 58121529 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6208;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58121562 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2396;AVGPOST=0.9976;RSQ=0.9948;ERATE=0.0004;THETA=0.0003;AC=523;AN=2184 GT:DS:GL:BD 0.23946886 0 1 58121612 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0043;AVGPOST=0.9975;RSQ=0.7610;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58121641 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0037;AVGPOST=1.0000;RSQ=0.9941;ERATE=0.0003;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58121854 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0070;AVGPOST=0.9996;RSQ=0.9775;ERATE=0.0003;THETA=0.0012;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58121895 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0024;AVGPOST=0.9987;RSQ=0.7884;ERATE=0.0015;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58121993 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0164;AVGPOST=0.9996;RSQ=0.9894;ERATE=0.0003;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 58122008 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58122041 . T TG 1232 PASS INDEL;BAVGPOST=0.924;BRSQ=0.703;LDAF=0.1480;AVGPOST=0.9238;RSQ=0.7760;ERATE=0.0100;THETA=0.0003;AC=305;AN=2184 GT:DS:GL:BD 0.13965201 0 1 58122100 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0307;AVGPOST=0.9998;RSQ=0.9974;ERATE=0.0003;THETA=0.0003;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 58122155 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.811;LDAF=0.0053;AVGPOST=0.9977;RSQ=0.8505;ERATE=0.0003;THETA=0.0001;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58122187 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9481;ERATE=0.0003;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58122213 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.919;LDAF=0.0103;AVGPOST=0.9984;RSQ=0.9477;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58122218 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5514;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58122273 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58122319 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9538;ERATE=0.0004;THETA=0.0023;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58122522 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.801;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8508;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58122587 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58122591 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7952;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58122669 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0077;AVGPOST=0.9986;RSQ=0.9317;ERATE=0.0006;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58122932 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2447;AVGPOST=0.9976;RSQ=0.9961;ERATE=0.0008;THETA=0.0004;AC=532;AN=2184 GT:DS:GL:BD 0.24358974 0 1 58122937 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0071;AVGPOST=0.9995;RSQ=0.9708;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58123127 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0021;AVGPOST=0.9991;RSQ=0.8036;ERATE=0.0005;THETA=0.0025;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58123131 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2795;AVGPOST=0.9985;RSQ=0.9970;ERATE=0.0005;THETA=0.0005;AC=610;AN=2184 GT:DS:GL:BD 0.27930403 0 1 58123176 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9484;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58123302 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0032;AVGPOST=0.9984;RSQ=0.8359;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58123327 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.655;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4978;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58123371 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0005;AVGPOST=0.9990;RSQ=0.3108;ERATE=0.0004;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 58123379 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0098;AVGPOST=0.9981;RSQ=0.9282;ERATE=0.0003;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58123392 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58123536 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7346;ERATE=0.0004;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58123629 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.4428;ERATE=0.0003;THETA=0.0026;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58123792 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9167;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58123813 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6265;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58123849 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9998;RSQ=0.9819;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58123891 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9218;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58124014 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0063;AVGPOST=0.9952;RSQ=0.6799;ERATE=0.0009;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58124061 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0074;AVGPOST=0.9989;RSQ=0.9423;ERATE=0.0005;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58124076 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.698;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.5026;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58124089 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0114;AVGPOST=0.9915;RSQ=0.7145;ERATE=0.0005;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58124129 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.598;LDAF=0.0040;AVGPOST=0.9961;RSQ=0.5887;ERATE=0.0006;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58124136 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0073;AVGPOST=0.9959;RSQ=0.7597;ERATE=0.0009;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58124196 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0027;AVGPOST=0.9982;RSQ=0.7067;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58124259 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0111;AVGPOST=0.9983;RSQ=0.9352;ERATE=0.0004;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58124262 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0095;AVGPOST=0.9968;RSQ=0.8744;ERATE=0.0003;THETA=0.0007;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58124330 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0194;AVGPOST=0.9984;RSQ=0.9703;ERATE=0.0003;THETA=0.0003;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 58124549 . CT C 110 PASS INDEL;BAVGPOST=0.999;BRSQ=0.806;LDAF=0.0032;AVGPOST=0.9981;RSQ=0.7498;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58124551 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2376;AVGPOST=0.9974;RSQ=0.9948;ERATE=0.0005;THETA=0.0003;AC=519;AN=2184 GT:DS:GL:BD 0.23763736 0 1 58124563 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5181;AVGPOST=0.9969;RSQ=0.9957;ERATE=0.0005;THETA=0.0014;AC=1131;AN=2184 GT:DS:GL:BD 0.51785713 1 1 58124901 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0025;AVGPOST=0.9974;RSQ=0.6409;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58124970 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7142;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58125011 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0225;AVGPOST=0.9997;RSQ=0.9948;ERATE=0.0003;THETA=0.0037;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 58125044 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58125050 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7989;AVGPOST=0.9982;RSQ=0.9957;ERATE=0.0003;THETA=0.0010;AC=1744;AN=2184 GT:DS:GL:BD 0.79853481 1 1 58125120 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0247;AVGPOST=0.9999;RSQ=0.9974;ERATE=0.0005;THETA=0.0003;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 58125194 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9611;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58125308 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.8016;AVGPOST=0.9961;RSQ=0.9911;ERATE=0.0004;THETA=0.0005;AC=1749;AN=2184 GT:DS:GL:BD 0.80082417 1 1 58125377 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.661;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9076;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58125455 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.3975;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58125512 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0167;AVGPOST=0.9991;RSQ=0.9753;ERATE=0.0005;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 58125563 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0159;AVGPOST=0.9991;RSQ=0.9755;ERATE=0.0003;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58125709 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.759;LDAF=0.0034;AVGPOST=0.9967;RSQ=0.6545;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58125761 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0027;AVGPOST=0.9984;RSQ=0.7872;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58125772 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0035;AVGPOST=0.9993;RSQ=0.9032;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58125803 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0084;AVGPOST=0.9996;RSQ=0.9790;ERATE=0.0003;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58125825 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0045;AVGPOST=0.9991;RSQ=0.9227;ERATE=0.0004;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58125841 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.559;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5918;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58125881 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7915;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58125892 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4644;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58125909 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6213;ERATE=0.0014;THETA=0.0022;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58125977 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.746;LDAF=0.0038;AVGPOST=0.9986;RSQ=0.8299;ERATE=0.0010;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58126100 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.542;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.5749;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58126104 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7344;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58126145 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0050;AVGPOST=0.9997;RSQ=0.9743;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58126168 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.7021;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58126247 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58126429 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8565;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58126437 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.735;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7124;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58126517 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.2007;AVGPOST=0.9973;RSQ=0.9936;ERATE=0.0006;THETA=0.0006;AC=436;AN=2184 GT:DS:GL:BD 0.19963370 0 1 58126521 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9812;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58126562 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2693;AVGPOST=0.9977;RSQ=0.9957;ERATE=0.0004;THETA=0.0003;AC=588;AN=2184 GT:DS:GL:BD 0.26923078 0 1 58126594 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2844;AVGPOST=0.9981;RSQ=0.9969;ERATE=0.0003;THETA=0.0002;AC=621;AN=2184 GT:DS:GL:BD 0.28434065 0 1 58126619 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5703;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58126677 . GA G 472 PASS INDEL;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8875;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58126707 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6933;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58126839 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.8019;AVGPOST=0.9988;RSQ=0.9972;ERATE=0.0003;THETA=0.0006;AC=1750;AN=2184 GT:DS:GL:BD 0.80128205 1 1 58126851 . GC G 883 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0085;AVGPOST=0.9973;RSQ=0.8838;ERATE=0.0004;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58126908 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58126933 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4551;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58126953 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.678;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.6361;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58127076 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0028;AVGPOST=0.9993;RSQ=0.8942;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58127088 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9253;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58127131 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.4588;ERATE=0.0003;THETA=0.0024;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 58127171 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.7864;AVGPOST=0.9946;RSQ=0.9876;ERATE=0.0025;THETA=0.0003;AC=1715;AN=2184 GT:DS:GL:BD 0.78525639 1 1 58127430 . A AG 7 PASS INDEL;BAVGPOST=0.999;BRSQ=0.830;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7557;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58127566 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7976;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58127654 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2850;AVGPOST=0.9984;RSQ=0.9969;ERATE=0.0005;THETA=0.0009;AC=623;AN=2184 GT:DS:GL:BD 0.28525642 0 1 58127655 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0040;AVGPOST=0.9975;RSQ=0.7938;ERATE=0.0010;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58127733 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8730;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58127918 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.958;BRSQ=0.887;LDAF=0.7484;AVGPOST=0.9221;RSQ=0.8470;ERATE=0.0157;THETA=0.0004;AC=1677;AN=2184 GT:DS:GL:BD 0.76785713 1 1 58127929 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.507;LDAF=0.0021;AVGPOST=0.9983;RSQ=0.6346;ERATE=0.0007;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58128013 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.779;LDAF=0.0067;AVGPOST=0.9974;RSQ=0.8261;ERATE=0.0004;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58128112 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.3627;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58128119 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.978;LDAF=0.2305;AVGPOST=0.9920;RSQ=0.9836;ERATE=0.0009;THETA=0.0003;AC=502;AN=2184 GT:DS:GL:BD 0.22985348 0 1 58128192 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5412;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58128346 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0157;AVGPOST=0.9996;RSQ=0.9883;ERATE=0.0003;THETA=0.0006;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58128383 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58128534 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6427;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58128575 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58128724 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.742;LDAF=0.0021;AVGPOST=0.9968;RSQ=0.4665;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58128745 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5142;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58128786 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7664;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58128804 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58128851 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7732;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58128868 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.631;LDAF=0.0045;AVGPOST=0.9975;RSQ=0.7822;ERATE=0.0005;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58128879 . CCA C 170 PASS INDEL;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0021;AVGPOST=0.9982;RSQ=0.6742;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58128897 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2855;AVGPOST=0.9980;RSQ=0.9965;ERATE=0.0004;THETA=0.0005;AC=624;AN=2184 GT:DS:GL:BD 0.28571430 0 1 58128928 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0021;AVGPOST=0.9988;RSQ=0.7543;ERATE=0.0005;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58128965 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.2689;AVGPOST=0.9970;RSQ=0.9947;ERATE=0.0004;THETA=0.0004;AC=588;AN=2184 GT:DS:GL:BD 0.26923078 0 1 58128987 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7385;ERATE=0.0003;THETA=0.0019;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58128993 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5543;ERATE=0.0005;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58129025 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0045;AVGPOST=0.9993;RSQ=0.9284;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58129082 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0065;AVGPOST=0.9989;RSQ=0.9273;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58129121 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9996;RSQ=0.9689;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58129170 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.5540;AVGPOST=0.9957;RSQ=0.9946;ERATE=0.0005;THETA=0.0006;AC=1211;AN=2184 GT:DS:GL:BD 0.55448717 1 1 58129304 . A AT 58 PASS INDEL;BAVGPOST=0.981;BRSQ=0.434;LDAF=0.0410;AVGPOST=0.9424;RSQ=0.4357;ERATE=0.0102;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 58129307 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0158;AVGPOST=0.9995;RSQ=0.9842;ERATE=0.0004;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58129393 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0019;AVGPOST=0.9975;RSQ=0.5241;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58129426 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.5659;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58129427 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.627;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.6253;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58129515 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.854;LDAF=0.0082;AVGPOST=0.9982;RSQ=0.9101;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58129595 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58129619 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0156;AVGPOST=0.9999;RSQ=0.9959;ERATE=0.0003;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58129636 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.2848;AVGPOST=0.9989;RSQ=0.9978;ERATE=0.0004;THETA=0.0005;AC=623;AN=2184 GT:DS:GL:BD 0.28525642 0 1 58129697 . A AT 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6623;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58129721 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58129768 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7835;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58129821 . G GT 56 PASS INDEL;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6819;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58129825 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5043;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58129954 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2384;AVGPOST=0.9984;RSQ=0.9966;ERATE=0.0003;THETA=0.0007;AC=522;AN=2184 GT:DS:GL:BD 0.23901099 0 1 58130074 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8450;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58130102 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7687;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58130107 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0070;AVGPOST=0.9983;RSQ=0.9059;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58130335 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.2641;AVGPOST=0.9974;RSQ=0.9954;ERATE=0.0004;THETA=0.0003;AC=577;AN=2184 GT:DS:GL:BD 0.26419413 0 1 58130563 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0020;AVGPOST=0.9980;RSQ=0.6264;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58130636 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.612;LDAF=0.0027;AVGPOST=0.9957;RSQ=0.3508;ERATE=0.0007;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58130718 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0029;AVGPOST=0.9955;RSQ=0.3760;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58130832 . G GA 17 PASS INDEL;BAVGPOST=0.999;BRSQ=0.608;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4679;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58130893 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5805;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58130894 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.795;LDAF=0.0062;AVGPOST=0.9979;RSQ=0.8552;ERATE=0.0004;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58130936 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.743;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7664;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58130940 . T TA 1649 PASS INDEL;BAVGPOST=0.991;BRSQ=0.692;LDAF=0.0176;AVGPOST=0.9873;RSQ=0.7149;ERATE=0.0005;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58130951 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0250;AVGPOST=0.9988;RSQ=0.9774;ERATE=0.0004;THETA=0.0010;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 58130994 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0047;AVGPOST=0.9994;RSQ=0.9368;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58131026 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2418;AVGPOST=0.9960;RSQ=0.9927;ERATE=0.0007;THETA=0.0006;AC=528;AN=2184 GT:DS:GL:BD 0.24175824 0 1 58131221 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58131280 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.948;LDAF=0.0872;AVGPOST=0.9924;RSQ=0.9633;ERATE=0.0005;THETA=0.0003;AC=188;AN=2184 GT:DS:GL:BD 0.08608059 0 1 58131332 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0026;AVGPOST=0.9975;RSQ=0.6261;ERATE=0.0009;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58131362 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5844;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58131402 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7519;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58131439 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6872;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58131499 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.653;LDAF=0.0098;AVGPOST=0.9959;RSQ=0.8261;ERATE=0.0011;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58131517 . T TTA 1411 PASS INDEL;BAVGPOST=0.898;BRSQ=0.643;LDAF=0.1525;AVGPOST=0.9319;RSQ=0.8188;ERATE=0.0007;THETA=0.0002;AC=343;AN=2184 GT:DS:GL:BD 0.15705128 0 1 58131519 . A ATC 20567 PASS INDEL;BAVGPOST=0.928;BRSQ=0.853;LDAF=0.3056;AVGPOST=0.8874;RSQ=0.8123;ERATE=0.0272;THETA=0.0006;AC=632;AN=2184 GT:DS:GL:BD 0.28937730 0 1 58131561 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.940;LDAF=0.0137;AVGPOST=0.9967;RSQ=0.8929;ERATE=0.0004;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58131720 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.929;LDAF=0.0168;AVGPOST=0.9963;RSQ=0.9078;ERATE=0.0005;THETA=0.0007;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58131758 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.853;LDAF=0.0035;AVGPOST=0.9967;RSQ=0.6264;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58131765 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=0.9990;RSQ=0.9601;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58131855 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6786;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58131878 . A AAT 2478 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0156;AVGPOST=0.9997;RSQ=0.9920;ERATE=0.0003;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58131937 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.5423;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58132000 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2382;AVGPOST=0.9981;RSQ=0.9958;ERATE=0.0006;THETA=0.0003;AC=522;AN=2184 GT:DS:GL:BD 0.23901099 0 1 58132083 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5572;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58132093 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.752;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6878;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58132193 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.815;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.7003;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58132216 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0156;AVGPOST=0.9999;RSQ=0.9959;ERATE=0.0003;THETA=0.0002;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58132244 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58132405 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2381;AVGPOST=0.9982;RSQ=0.9962;ERATE=0.0004;THETA=0.0003;AC=522;AN=2184 GT:DS:GL:BD 0.23901099 0 1 58132441 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7700;ERATE=0.0010;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58132470 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0157;AVGPOST=0.9996;RSQ=0.9892;ERATE=0.0003;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58132526 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0045;AVGPOST=0.9989;RSQ=0.8806;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58132568 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0068;AVGPOST=0.9948;RSQ=0.6999;ERATE=0.0007;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58132573 . G GGA 155 PASS INDEL;BAVGPOST=0.992;BRSQ=0.426;LDAF=0.0224;AVGPOST=0.9668;RSQ=0.3804;ERATE=0.0040;THETA=0.0038;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58132622 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0091;AVGPOST=0.9973;RSQ=0.8787;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58132712 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0040;AVGPOST=0.9991;RSQ=0.9136;ERATE=0.0003;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58132762 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58132790 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2482;AVGPOST=0.9973;RSQ=0.9952;ERATE=0.0005;THETA=0.0004;AC=544;AN=2184 GT:DS:GL:BD 0.24908425 0 1 58132895 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8855;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58133085 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7233;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58133093 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.8011;AVGPOST=0.9957;RSQ=0.9895;ERATE=0.0005;THETA=0.0005;AC=1749;AN=2184 GT:DS:GL:BD 0.80082417 1 1 58133223 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5903;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58133305 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9670;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58133461 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0024;AVGPOST=0.9990;RSQ=0.8342;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58133523 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.642;LDAF=0.0130;AVGPOST=0.9856;RSQ=0.5802;ERATE=0.0038;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58133645 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0158;AVGPOST=0.9995;RSQ=0.9841;ERATE=0.0003;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58133701 . A AT 7072 PASS INDEL;BAVGPOST=0.944;BRSQ=0.743;LDAF=0.0948;AVGPOST=0.9591;RSQ=0.8425;ERATE=0.0007;THETA=0.0004;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 58133704 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0073;AVGPOST=0.9971;RSQ=0.8357;ERATE=0.0005;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58133713 . AT A 6580 PASS INDEL;BAVGPOST=0.917;BRSQ=0.735;LDAF=0.1615;AVGPOST=0.9101;RSQ=0.7809;ERATE=0.0047;THETA=0.0006;AC=322;AN=2184 GT:DS:GL:BD 0.14743590 0 1 58133714 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.957;BRSQ=0.896;LDAF=0.2628;AVGPOST=0.9575;RSQ=0.9193;ERATE=0.0074;THETA=0.0007;AC=579;AN=2184 GT:DS:GL:BD 0.26510990 0 1 58133715 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0028;AVGPOST=0.9972;RSQ=0.5515;ERATE=0.0007;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58133805 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.980;LDAF=0.0194;AVGPOST=0.9985;RSQ=0.9666;ERATE=0.0006;THETA=0.0009;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 58133969 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.712;LDAF=0.0036;AVGPOST=0.9949;RSQ=0.5102;ERATE=0.0003;THETA=0.0054;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58133977 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58133982 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6244;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58134086 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6854;ERATE=0.0004;THETA=0.0020;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58134104 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2486;AVGPOST=0.9982;RSQ=0.9960;ERATE=0.0004;THETA=0.0008;AC=544;AN=2184 GT:DS:GL:BD 0.24908425 0 1 58134169 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4908;AVGPOST=0.9954;RSQ=0.9942;ERATE=0.0006;THETA=0.0006;AC=1072;AN=2184 GT:DS:GL:BD 0.49084249 0 1 58134175 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0279;AVGPOST=0.9984;RSQ=0.9788;ERATE=0.0003;THETA=0.0004;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 58134236 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.8000;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58134335 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.726;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58134401 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6707;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58134513 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0033;AVGPOST=0.9996;RSQ=0.9476;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58134589 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58134645 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0074;AVGPOST=0.9996;RSQ=0.9766;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58134711 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.817;LDAF=0.0022;AVGPOST=0.9990;RSQ=0.7970;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58134816 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5461;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58134823 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2417;AVGPOST=0.9970;RSQ=0.9933;ERATE=0.0005;THETA=0.0014;AC=527;AN=2184 GT:DS:GL:BD 0.24130036 0 1 58134827 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.907;LDAF=0.0152;AVGPOST=0.9920;RSQ=0.7841;ERATE=0.0005;THETA=0.0010;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58134867 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0075;AVGPOST=0.9988;RSQ=0.9329;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58134988 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5512;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58135206 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0162;AVGPOST=0.9980;RSQ=0.9499;ERATE=0.0004;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58135257 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.659;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7469;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58135270 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0150;AVGPOST=0.9990;RSQ=0.9716;ERATE=0.0004;THETA=0.0002;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58135450 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58135479 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.6668;ERATE=0.0008;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58135507 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7021;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58135533 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0079;AVGPOST=0.9997;RSQ=0.9808;ERATE=0.0003;THETA=0.0023;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58135599 . TA T 82 PASS INDEL;BAVGPOST=0.998;BRSQ=0.673;LDAF=0.0030;AVGPOST=0.9977;RSQ=0.6990;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58135618 . TAACA T 227 PASS INDEL;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8066;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58135746 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9820;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58135778 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0075;AVGPOST=0.9995;RSQ=0.9685;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58136083 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.919;LDAF=0.0126;AVGPOST=0.9984;RSQ=0.9450;ERATE=0.0003;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58136131 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=1.0000;RSQ=0.9963;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58136248 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58136249 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0039;AVGPOST=0.9982;RSQ=0.8258;ERATE=0.0006;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58136319 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58136322 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58136457 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58136468 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2290;AVGPOST=0.9972;RSQ=0.9936;ERATE=0.0006;THETA=0.0015;AC=499;AN=2184 GT:DS:GL:BD 0.22847985 0 1 58136489 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7882;ERATE=0.0003;THETA=0.0059;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58136576 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0072;AVGPOST=0.9994;RSQ=0.9635;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58136678 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58136699 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0025;AVGPOST=0.9990;RSQ=0.8293;ERATE=0.0004;THETA=0.0032;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58136781 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2701;AVGPOST=0.9944;RSQ=0.9896;ERATE=0.0010;THETA=0.0005;AC=593;AN=2184 GT:DS:GL:BD 0.27152014 0 1 58137162 . TATATAGC T 227 PASS INDEL;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0004;THETA=0.0035;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58137225 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0155;AVGPOST=0.9999;RSQ=0.9959;ERATE=0.0003;THETA=0.0069;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58137233 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0097;AVGPOST=0.9995;RSQ=0.9750;ERATE=0.0003;THETA=0.0050;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58137253 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8651;ERATE=0.0003;THETA=0.0073;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58137279 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.963;LDAF=0.3048;AVGPOST=0.9807;RSQ=0.9720;ERATE=0.0011;THETA=0.0010;AC=657;AN=2184 GT:DS:GL:BD 0.30082417 0 1 58137322 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0003;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58137549 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.645;LDAF=0.0074;AVGPOST=0.9912;RSQ=0.5623;ERATE=0.0020;THETA=0.0047;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58137672 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0157;AVGPOST=0.9995;RSQ=0.9856;ERATE=0.0004;THETA=0.0009;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58137728 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7089;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58137877 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.809;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5136;ERATE=0.0004;THETA=0.0146;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58137892 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58137948 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4541;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58137958 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58138011 . A ATAAG 243 PASS INDEL;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4680;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58138113 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.565;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.5324;ERATE=0.0003;THETA=0.0051;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58138334 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9861;ERATE=0.0003;THETA=0.0019;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58138395 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.798;LDAF=0.0032;AVGPOST=0.9983;RSQ=0.7824;ERATE=0.0013;THETA=0.0090;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58138484 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0156;AVGPOST=0.9998;RSQ=0.9946;ERATE=0.0003;THETA=0.0006;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58138520 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58138609 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0049;AVGPOST=0.9988;RSQ=0.9149;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58138708 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0114;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58138711 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58138762 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58138779 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2239;AVGPOST=0.9981;RSQ=0.9957;ERATE=0.0004;THETA=0.0009;AC=489;AN=2184 GT:DS:GL:BD 0.22390109 0 1 58138868 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0097;AVGPOST=0.9997;RSQ=0.9857;ERATE=0.0003;THETA=0.0017;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58138896 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1561;AVGPOST=0.9985;RSQ=0.9954;ERATE=0.0004;THETA=0.0006;AC=342;AN=2184 GT:DS:GL:BD 0.15659341 0 1 58138964 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2239;AVGPOST=0.9991;RSQ=0.9978;ERATE=0.0004;THETA=0.0004;AC=489;AN=2184 GT:DS:GL:BD 0.22390109 0 1 58139019 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9568;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58139077 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0010;AVGPOST=0.9986;RSQ=0.4979;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58139223 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6204;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58139294 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.993;LDAF=0.5276;AVGPOST=0.9930;RSQ=0.9895;ERATE=0.0008;THETA=0.0004;AC=1151;AN=2184 GT:DS:GL:BD 0.52701467 1 1 58139341 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0168;AVGPOST=0.9993;RSQ=0.9808;ERATE=0.0003;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 58139473 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7763;AVGPOST=0.9988;RSQ=0.9971;ERATE=0.0006;THETA=0.0005;AC=1695;AN=2184 GT:DS:GL:BD 0.77609891 1 1 58139549 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0156;AVGPOST=0.9995;RSQ=0.9877;ERATE=0.0003;THETA=0.0002;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58139568 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0055;AVGPOST=0.9992;RSQ=0.9459;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58139702 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.7698;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58139742 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6112;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58140049 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.753;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58140061 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0295;AVGPOST=0.9989;RSQ=0.9846;ERATE=0.0006;THETA=0.0005;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 58140068 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1563;AVGPOST=0.9992;RSQ=0.9976;ERATE=0.0004;THETA=0.0004;AC=342;AN=2184 GT:DS:GL:BD 0.15659341 0 1 58140091 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0054;AVGPOST=0.9989;RSQ=0.9259;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58140092 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58140118 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58140224 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0008;AVGPOST=0.9998;RSQ=0.9110;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58140227 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7176;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58140231 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6804;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58140277 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7766;AVGPOST=0.9997;RSQ=0.9993;ERATE=0.0003;THETA=0.0003;AC=1695;AN=2184 GT:DS:GL:BD 0.77609891 1 1 58140314 . CA C 162 PASS INDEL;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5320;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58140342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0074;AVGPOST=0.9962;RSQ=0.8184;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58140390 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9076;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58140463 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0125;AVGPOST=0.9997;RSQ=0.9887;ERATE=0.0003;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58140472 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58140508 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58140524 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.746;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6548;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58140543 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58140600 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58140604 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9888;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58140679 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6765;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58140752 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58140771 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58140777 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6213;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58140798 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.6230;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58140858 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.6118;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58140871 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58140874 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7768;AVGPOST=0.9991;RSQ=0.9983;ERATE=0.0003;THETA=0.0003;AC=1695;AN=2184 GT:DS:GL:BD 0.77609891 1 1 58140891 . TA T 135 PASS INDEL;BAVGPOST=0.999;BRSQ=0.785;LDAF=0.0022;AVGPOST=0.9981;RSQ=0.6265;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58140963 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58141002 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0105;AVGPOST=0.9991;RSQ=0.9621;ERATE=0.0004;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58141061 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.779;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58141077 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0025;AVGPOST=0.9982;RSQ=0.6802;ERATE=0.0011;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58141105 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58141120 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58141156 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0161;AVGPOST=0.9996;RSQ=0.9885;ERATE=0.0003;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 58141173 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7746;AVGPOST=0.9984;RSQ=0.9965;ERATE=0.0004;THETA=0.0006;AC=1691;AN=2184 GT:DS:GL:BD 0.77426738 1 1 58141219 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0049;AVGPOST=0.9991;RSQ=0.9328;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58141412 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0030;AVGPOST=0.9987;RSQ=0.8255;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58141486 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.7592;AVGPOST=0.9974;RSQ=0.9945;ERATE=0.0007;THETA=0.0004;AC=1656;AN=2184 GT:DS:GL:BD 0.75824177 1 1 58141556 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7745;AVGPOST=0.9985;RSQ=0.9972;ERATE=0.0005;THETA=0.0002;AC=1690;AN=2184 GT:DS:GL:BD 0.77380955 1 1 58141578 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.9094;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58141610 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0062;AVGPOST=0.9964;RSQ=0.7758;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58141611 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.871;LDAF=0.9953;AVGPOST=0.9983;RSQ=0.8510;ERATE=0.0004;THETA=0.0003;AC=2175;AN=2184 GT:DS:GL:BD 0.99587911 1 1 58141645 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7967;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58141721 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58141808 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0225;AVGPOST=0.9994;RSQ=0.9866;ERATE=0.0003;THETA=0.0004;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 58141816 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9392;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58141861 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58141868 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8476;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58142057 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58142095 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.8076;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58142124 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0127;AVGPOST=0.9993;RSQ=0.9842;ERATE=0.0003;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58142130 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=0.9994;RSQ=0.5110;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58142143 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58142331 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7163;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58142332 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0020;AVGPOST=0.9991;RSQ=0.8009;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58142337 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0020;AVGPOST=0.9981;RSQ=0.6531;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58142379 . C CT 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5736;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58142404 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6321;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58142503 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0032;AVGPOST=0.9996;RSQ=0.9410;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58142616 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.5810;ERATE=0.0004;THETA=0.0001;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58142827 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0027;AVGPOST=0.9983;RSQ=0.7736;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58142862 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0052;AVGPOST=0.9996;RSQ=0.9715;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58142874 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58143003 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.855;LDAF=0.0066;AVGPOST=0.9985;RSQ=0.9110;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58143095 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58143112 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6919;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58143150 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7764;AVGPOST=0.9988;RSQ=0.9971;ERATE=0.0004;THETA=0.0005;AC=1695;AN=2184 GT:DS:GL:BD 0.77609891 1 1 58143170 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5943;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58143214 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0170;AVGPOST=0.9999;RSQ=0.9975;ERATE=0.0003;THETA=0.0006;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 58143256 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58143337 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7765;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58143346 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58143348 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0031;AVGPOST=0.9964;RSQ=0.5339;ERATE=0.0007;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58143371 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7153;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58143453 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4977;AVGPOST=0.9956;RSQ=0.9943;ERATE=0.0004;THETA=0.0004;AC=1086;AN=2184 GT:DS:GL:BD 0.49725273 0 1 58143467 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0047;AVGPOST=0.9960;RSQ=0.7286;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58143490 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.824;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8410;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58143524 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0158;AVGPOST=0.9995;RSQ=0.9874;ERATE=0.0003;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58143555 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.7590;AVGPOST=0.9981;RSQ=0.9958;ERATE=0.0007;THETA=0.0005;AC=1658;AN=2184 GT:DS:GL:BD 0.75915754 1 1 58143578 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5963;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58143628 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6776;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58143696 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2238;AVGPOST=0.9968;RSQ=0.9929;ERATE=0.0005;THETA=0.0002;AC=488;AN=2184 GT:DS:GL:BD 0.22344323 0 1 58143798 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7095;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58143918 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58143927 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58143941 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0127;AVGPOST=0.9984;RSQ=0.9583;ERATE=0.0003;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58143952 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0128;AVGPOST=0.9992;RSQ=0.9794;ERATE=0.0003;THETA=0.0002;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58143969 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.727;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5895;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58144097 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0035;AVGPOST=0.9987;RSQ=0.8463;ERATE=0.0020;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58144129 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7380;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58144161 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0262;AVGPOST=0.9979;RSQ=0.9706;ERATE=0.0004;THETA=0.0005;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 58144210 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7782;AVGPOST=0.9992;RSQ=0.9980;ERATE=0.0004;THETA=0.0001;AC=1699;AN=2184 GT:DS:GL:BD 0.77793038 1 1 58144214 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.974;LDAF=0.0989;AVGPOST=0.9937;RSQ=0.9734;ERATE=0.0004;THETA=0.0003;AC=213;AN=2184 GT:DS:GL:BD 0.09752747 0 1 58144236 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58144616 . TG T 148 PASS INDEL;BAVGPOST=0.937;BRSQ=0.314;LDAF=0.0777;AVGPOST=0.8935;RSQ=0.4006;ERATE=0.0141;THETA=0.0004;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 58144637 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.954;LDAF=0.5151;AVGPOST=0.9733;RSQ=0.9596;ERATE=0.0040;THETA=0.0002;AC=1134;AN=2184 GT:DS:GL:BD 0.51923078 1 1 58144732 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9133;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58144785 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.8015;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58144829 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58144895 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8194;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58144942 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7782;AVGPOST=0.9992;RSQ=0.9981;ERATE=0.0004;THETA=0.0003;AC=1699;AN=2184 GT:DS:GL:BD 0.77793038 1 1 58144943 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.5398;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58144957 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.4580;AVGPOST=0.9949;RSQ=0.9934;ERATE=0.0006;THETA=0.0005;AC=998;AN=2184 GT:DS:GL:BD 0.45695969 0 1 58144966 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7762;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58144969 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6380;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58145076 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8908;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58145131 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0157;AVGPOST=0.9997;RSQ=0.9911;ERATE=0.0004;THETA=0.0006;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58145154 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6253;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58145219 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0047;AVGPOST=0.9964;RSQ=0.6913;ERATE=0.0014;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58145246 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58145277 . GT G 55 PASS INDEL;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58145331 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0022;AVGPOST=0.9989;RSQ=0.7907;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58145331 . G GCA 22 PASS INDEL;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4757;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58145332 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0157;AVGPOST=0.9997;RSQ=0.9912;ERATE=0.0003;THETA=0.0002;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58145339 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0166;AVGPOST=0.9984;RSQ=0.9712;ERATE=0.0003;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 58145458 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8496;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58145485 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0013;AVGPOST=0.9998;RSQ=0.9244;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58145527 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9860;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58145764 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58145932 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7303;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58145970 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.7795;AVGPOST=0.9974;RSQ=0.9949;ERATE=0.0003;THETA=0.0002;AC=1702;AN=2184 GT:DS:GL:BD 0.77930403 1 1 58146050 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58146417 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58146428 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0124;AVGPOST=0.9989;RSQ=0.9568;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58146460 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8148;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58146472 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0015;AVGPOST=0.9991;RSQ=0.7770;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58146554 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.892;LDAF=0.0087;AVGPOST=0.9977;RSQ=0.8934;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58146600 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0039;AVGPOST=0.9990;RSQ=0.9075;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58146611 . T TC 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0029;AVGPOST=0.9974;RSQ=0.6247;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58146860 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9562;ERATE=0.0008;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58147192 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58147373 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8507;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58147459 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0063;AVGPOST=0.9992;RSQ=0.9383;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58147536 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58147592 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58147691 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0060;AVGPOST=0.9990;RSQ=0.9317;ERATE=0.0005;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58147704 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7726;AVGPOST=0.9978;RSQ=0.9955;ERATE=0.0004;THETA=0.0003;AC=1685;AN=2184 GT:DS:GL:BD 0.77152014 1 1 58147711 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0080;AVGPOST=0.9996;RSQ=0.9781;ERATE=0.0004;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58147810 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0156;AVGPOST=0.9995;RSQ=0.9865;ERATE=0.0004;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58147886 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.4790;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58147913 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0036;AVGPOST=0.9998;RSQ=0.9705;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58147977 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6879;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58147990 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6244;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58148018 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0015;AVGPOST=0.9978;RSQ=0.4605;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58148095 . A AGT 94 PASS INDEL;BAVGPOST=0.998;BRSQ=0.762;LDAF=0.0093;AVGPOST=0.9904;RSQ=0.6037;ERATE=0.0040;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58148257 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.880;LDAF=0.0050;AVGPOST=0.9979;RSQ=0.8590;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58148309 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0026;AVGPOST=0.9975;RSQ=0.5651;ERATE=0.0016;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58148398 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58148455 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1499;AVGPOST=0.9983;RSQ=0.9946;ERATE=0.0004;THETA=0.0005;AC=329;AN=2184 GT:DS:GL:BD 0.15064102 0 1 58148482 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5574;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58148684 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8702;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58148711 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0053;AVGPOST=0.9966;RSQ=0.7670;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58148806 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0048;AVGPOST=0.9989;RSQ=0.9033;ERATE=0.0004;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58148828 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7857;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58148873 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0164;AVGPOST=0.9982;RSQ=0.9565;ERATE=0.0004;THETA=0.0006;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58148961 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5520;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58149019 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4790;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58149339 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58149350 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0176;AVGPOST=0.9994;RSQ=0.9874;ERATE=0.0003;THETA=0.0002;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 58149397 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0056;AVGPOST=0.9994;RSQ=0.9545;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58149573 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7579;AVGPOST=0.9979;RSQ=0.9956;ERATE=0.0004;THETA=0.0005;AC=1654;AN=2184 GT:DS:GL:BD 0.75732601 1 1 58149674 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5149;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58149710 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.9076;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58149774 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8059;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58149817 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0162;AVGPOST=0.9995;RSQ=0.9871;ERATE=0.0003;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 58149851 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1571;AVGPOST=0.9978;RSQ=0.9936;ERATE=0.0004;THETA=0.0004;AC=345;AN=2184 GT:DS:GL:BD 0.15796703 0 1 58149990 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7994;ERATE=0.0005;THETA=0.0001;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58150284 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0141;AVGPOST=0.9992;RSQ=0.9807;ERATE=0.0003;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58150295 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0054;AVGPOST=0.9991;RSQ=0.9401;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58150335 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0050;AVGPOST=0.9989;RSQ=0.9166;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58150525 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.3096;AVGPOST=0.9944;RSQ=0.9912;ERATE=0.0005;THETA=0.0002;AC=675;AN=2184 GT:DS:GL:BD 0.30906594 0 1 58150530 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7754;AVGPOST=0.9992;RSQ=0.9982;ERATE=0.0003;THETA=0.0005;AC=1693;AN=2184 GT:DS:GL:BD 0.77518314 1 1 58150554 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7539;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58150564 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58150596 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6415;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58150815 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.551;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5736;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58150899 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0173;AVGPOST=0.9990;RSQ=0.9732;ERATE=0.0005;THETA=0.0002;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 58150924 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7769;AVGPOST=0.9979;RSQ=0.9956;ERATE=0.0005;THETA=0.0005;AC=1696;AN=2184 GT:DS:GL:BD 0.77655679 1 1 58151035 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.753;LDAF=0.0030;AVGPOST=0.9988;RSQ=0.8290;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58151048 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7475;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58151053 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0128;AVGPOST=0.9990;RSQ=0.9708;ERATE=0.0003;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58151060 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0050;AVGPOST=0.9973;RSQ=0.7961;ERATE=0.0023;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58151102 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7496;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58151146 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8448;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58151149 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8091;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58151151 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8455;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58151375 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7771;AVGPOST=0.9989;RSQ=0.9974;ERATE=0.0004;THETA=0.0003;AC=1697;AN=2184 GT:DS:GL:BD 0.77701467 1 1 58151542 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7751;AVGPOST=0.9979;RSQ=0.9951;ERATE=0.0005;THETA=0.0006;AC=1694;AN=2184 GT:DS:GL:BD 0.77564102 1 1 58151685 . GA G 40 PASS INDEL;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0021;AVGPOST=0.9978;RSQ=0.5667;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58151738 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7576;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58151790 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58151852 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7728;AVGPOST=0.9979;RSQ=0.9956;ERATE=0.0004;THETA=0.0003;AC=1687;AN=2184 GT:DS:GL:BD 0.77243590 1 1 58151859 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.647;LDAF=0.0008;AVGPOST=0.9989;RSQ=0.4291;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58151879 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58151919 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7777;AVGPOST=0.9976;RSQ=0.9946;ERATE=0.0004;THETA=0.0005;AC=1697;AN=2184 GT:DS:GL:BD 0.77701467 1 1 58151970 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.7477;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58152106 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0045;AVGPOST=0.9971;RSQ=0.7390;ERATE=0.0005;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58152107 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0046;AVGPOST=0.9984;RSQ=0.8471;ERATE=0.0006;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58152157 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7442;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58152219 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0028;AVGPOST=0.9995;RSQ=0.9275;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58152245 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6823;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58152281 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9888;ERATE=0.0004;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58152308 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58152514 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8335;ERATE=0.0011;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58152596 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0034;AVGPOST=0.9985;RSQ=0.8218;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58152722 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7733;AVGPOST=0.9984;RSQ=0.9962;ERATE=0.0007;THETA=0.0003;AC=1689;AN=2184 GT:DS:GL:BD 0.77335167 1 1 58152749 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7529;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58152841 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0145;AVGPOST=0.9993;RSQ=0.9785;ERATE=0.0003;THETA=0.0002;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 58153032 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.7614;AVGPOST=0.9982;RSQ=0.9960;ERATE=0.0007;THETA=0.0002;AC=1662;AN=2184 GT:DS:GL:BD 0.76098901 1 1 58153221 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0036;AVGPOST=0.9994;RSQ=0.9245;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58153574 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8264;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58153638 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9312;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58153645 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0037;AVGPOST=0.9996;RSQ=0.9533;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58153714 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58153715 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.684;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7163;ERATE=0.0007;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58153785 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58153798 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0078;AVGPOST=0.9999;RSQ=0.9944;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58154029 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.766;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8735;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58154148 . AT A 301 PASS INDEL;BAVGPOST=0.992;BRSQ=0.797;LDAF=0.0294;AVGPOST=0.9769;RSQ=0.6785;ERATE=0.0120;THETA=0.0004;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 58154218 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0080;AVGPOST=0.9993;RSQ=0.9587;ERATE=0.0004;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58154233 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.993;LDAF=0.5299;AVGPOST=0.9892;RSQ=0.9845;ERATE=0.0017;THETA=0.0003;AC=1160;AN=2184 GT:DS:GL:BD 0.53113556 1 1 58154266 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.5934;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58154269 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0082;AVGPOST=0.9991;RSQ=0.9469;ERATE=0.0004;THETA=0.0010;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58154332 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7826;ERATE=0.0010;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58154341 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58154351 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5295;AVGPOST=0.9980;RSQ=0.9966;ERATE=0.0005;THETA=0.0004;AC=1157;AN=2184 GT:DS:GL:BD 0.52976191 1 1 58154361 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7225;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58154429 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1506;AVGPOST=0.9970;RSQ=0.9902;ERATE=0.0005;THETA=0.0005;AC=329;AN=2184 GT:DS:GL:BD 0.15064102 0 1 58154458 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0110;AVGPOST=0.9978;RSQ=0.9182;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58154465 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.742;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8810;ERATE=0.0003;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58154517 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7745;AVGPOST=0.9973;RSQ=0.9941;ERATE=0.0005;THETA=0.0005;AC=1693;AN=2184 GT:DS:GL:BD 0.77518314 1 1 58154658 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0024;AVGPOST=0.9981;RSQ=0.7189;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58154666 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0022;AVGPOST=0.9975;RSQ=0.5734;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58154714 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0059;AVGPOST=0.9989;RSQ=0.9253;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58154785 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0041;AVGPOST=0.9983;RSQ=0.8176;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58154787 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0125;AVGPOST=0.9998;RSQ=0.9917;ERATE=0.0003;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58154811 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0059;AVGPOST=0.9991;RSQ=0.9421;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58154828 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6305;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58154834 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.764;LDAF=0.0075;AVGPOST=0.9979;RSQ=0.8860;ERATE=0.0004;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58155130 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58155275 . AT A 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5396;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58155372 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7728;AVGPOST=0.9983;RSQ=0.9961;ERATE=0.0005;THETA=0.0003;AC=1687;AN=2184 GT:DS:GL:BD 0.77243590 1 1 58155444 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5887;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58155454 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6612;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58155494 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5620;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58155551 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58155722 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9205;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58155788 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0035;AVGPOST=0.9990;RSQ=0.8894;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58155826 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6141;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58155866 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0142;AVGPOST=0.9997;RSQ=0.9898;ERATE=0.0003;THETA=0.0007;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 58155974 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7408;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58155990 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7425;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58156000 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0080;AVGPOST=0.9992;RSQ=0.9535;ERATE=0.0004;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58156012 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.734;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8251;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58156015 . T TG 200 PASS INDEL;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6001;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58156016 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5388;AVGPOST=0.9987;RSQ=0.9979;ERATE=0.0003;THETA=0.0003;AC=1176;AN=2184 GT:DS:GL:BD 0.53846157 1 1 58156019 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0390;AVGPOST=0.9984;RSQ=0.9853;ERATE=0.0003;THETA=0.0002;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 58156045 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8182;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58156046 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0042;AVGPOST=0.9991;RSQ=0.9165;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58156179 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6597;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58156362 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0042;AVGPOST=0.9983;RSQ=0.8190;ERATE=0.0005;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58156448 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0021;AVGPOST=0.9973;RSQ=0.4823;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58156475 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58156524 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.591;LDAF=0.0018;AVGPOST=0.9977;RSQ=0.4696;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58156569 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.7776;AVGPOST=0.9951;RSQ=0.9901;ERATE=0.0010;THETA=0.0003;AC=1699;AN=2184 GT:DS:GL:BD 0.77793038 1 1 58156588 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9857;ERATE=0.0003;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58156644 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.924;LDAF=0.0251;AVGPOST=0.9967;RSQ=0.9428;ERATE=0.0007;THETA=0.0002;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 58156682 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.754;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5443;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58156684 . GTTGT G 43 PASS INDEL;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5687;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58156708 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6037;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58156720 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0142;AVGPOST=0.9986;RSQ=0.9626;ERATE=0.0003;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58156754 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58156893 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9403;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58157051 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7431;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58157119 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9175;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58157177 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9519;ERATE=0.0004;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58157193 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58157314 . CTG C 227 PASS INDEL;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7750;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58157520 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0051;AVGPOST=0.9984;RSQ=0.8562;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58157592 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8584;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58157663 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.732;LDAF=0.0026;AVGPOST=0.9972;RSQ=0.5503;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58157746 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.7737;AVGPOST=0.9948;RSQ=0.9891;ERATE=0.0009;THETA=0.0003;AC=1691;AN=2184 GT:DS:GL:BD 0.77426738 1 1 58157778 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2202;AVGPOST=0.9935;RSQ=0.9850;ERATE=0.0024;THETA=0.0003;AC=478;AN=2184 GT:DS:GL:BD 0.21886447 0 1 58157781 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0071;AVGPOST=0.9985;RSQ=0.9309;ERATE=0.0004;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58157895 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4901;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58158235 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6419;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58158245 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.917;LDAF=0.0054;AVGPOST=0.9979;RSQ=0.8386;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58158341 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8031;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58158412 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.702;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9094;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58158530 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7761;AVGPOST=0.9984;RSQ=0.9967;ERATE=0.0005;THETA=0.0003;AC=1695;AN=2184 GT:DS:GL:BD 0.77609891 1 1 58158542 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0097;AVGPOST=0.9995;RSQ=0.9798;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58158619 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.860;LDAF=0.0063;AVGPOST=0.9994;RSQ=0.9512;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58158647 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.845;LDAF=0.0095;AVGPOST=0.9984;RSQ=0.9292;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58158723 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.680;LDAF=0.0026;AVGPOST=0.9966;RSQ=0.4822;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58158875 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0037;AVGPOST=0.9987;RSQ=0.8648;ERATE=0.0005;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58158898 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.701;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8085;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58159028 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0022;AVGPOST=0.9976;RSQ=0.6505;ERATE=0.0007;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58159052 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4979;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58159195 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.697;LDAF=0.0031;AVGPOST=0.9962;RSQ=0.5107;ERATE=0.0008;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58159254 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0022;AVGPOST=0.9980;RSQ=0.6915;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58159255 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6738;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58159274 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0156;AVGPOST=0.9995;RSQ=0.9849;ERATE=0.0003;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58159281 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0294;AVGPOST=0.9981;RSQ=0.9763;ERATE=0.0005;THETA=0.0002;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 58159407 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5045;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58159424 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5360;AVGPOST=0.9969;RSQ=0.9952;ERATE=0.0007;THETA=0.0004;AC=1170;AN=2184 GT:DS:GL:BD 0.53571427 1 1 58159454 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8656;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58159544 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5558;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58159575 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58159740 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5140;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58159802 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8600;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58159847 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7736;AVGPOST=0.9990;RSQ=0.9978;ERATE=0.0004;THETA=0.0003;AC=1689;AN=2184 GT:DS:GL:BD 0.77335167 1 1 58159949 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.843;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8858;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58160069 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0068;AVGPOST=0.9995;RSQ=0.9667;ERATE=0.0003;THETA=0.0031;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58160107 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.5127;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58160118 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0131;AVGPOST=0.9983;RSQ=0.9566;ERATE=0.0004;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 58160124 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.7716;AVGPOST=0.9987;RSQ=0.9970;ERATE=0.0005;THETA=0.0004;AC=1684;AN=2184 GT:DS:GL:BD 0.77106225 1 1 58160135 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7733;AVGPOST=0.9990;RSQ=0.9977;ERATE=0.0003;THETA=0.0006;AC=1688;AN=2184 GT:DS:GL:BD 0.77289379 1 1 58160146 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58160304 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.967;LDAF=0.1433;AVGPOST=0.9898;RSQ=0.9709;ERATE=0.0005;THETA=0.0004;AC=310;AN=2184 GT:DS:GL:BD 0.14194140 0 1 58160398 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0063;AVGPOST=0.9974;RSQ=0.8448;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58160508 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.7783;AVGPOST=0.9972;RSQ=0.9938;ERATE=0.0006;THETA=0.0004;AC=1701;AN=2184 GT:DS:GL:BD 0.77884614 1 1 58160602 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0126;AVGPOST=0.9995;RSQ=0.9852;ERATE=0.0003;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58160618 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.989;LDAF=0.4835;AVGPOST=0.9881;RSQ=0.9826;ERATE=0.0006;THETA=0.0012;AC=1056;AN=2184 GT:DS:GL:BD 0.48351648 0 1 58160637 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.707;LDAF=0.0021;AVGPOST=0.9981;RSQ=0.6187;ERATE=0.0006;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58160751 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.530;LDAF=0.0028;AVGPOST=0.9965;RSQ=0.5483;ERATE=0.0008;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58160752 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.734;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6860;ERATE=0.0006;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58160801 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.919;LDAF=0.2077;AVGPOST=0.9698;RSQ=0.9432;ERATE=0.0005;THETA=0.0003;AC=451;AN=2184 GT:DS:GL:BD 0.20650183 0 1 58160820 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.723;LDAF=0.0029;AVGPOST=0.9952;RSQ=0.3336;ERATE=0.0007;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58160853 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4829;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58160889 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0185;AVGPOST=0.9968;RSQ=0.9404;ERATE=0.0003;THETA=0.0011;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 58160967 rs71051244 AGAAG A 15571 PASS INDEL;BAVGPOST=0.855;BRSQ=0.744;LDAF=0.6098;AVGPOST=0.7612;RSQ=0.6387;ERATE=0.0521;THETA=0.0004;AC=1435;AN=2184 GT:DS:GL:BD 0.65705127 1 1 58160971 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.863;BRSQ=0.747;LDAF=0.6512;AVGPOST=0.8112;RSQ=0.6851;ERATE=0.0455;THETA=0.0004;AC=1526;AN=2184 GT:DS:GL:BD 0.69871795 1 1 58161064 . G GA 5869 PASS INDEL;BAVGPOST=0.877;BRSQ=0.737;LDAF=0.2639;AVGPOST=0.8596;RSQ=0.7367;ERATE=0.0087;THETA=0.0003;AC=558;AN=2184 GT:DS:GL:BD 0.25549451 0 1 58161071 . AG A 1188 PASS INDEL;BAVGPOST=0.872;BRSQ=0.740;LDAF=0.2599;AVGPOST=0.8762;RSQ=0.7836;ERATE=0.0040;THETA=0.0004;AC=566;AN=2184 GT:DS:GL:BD 0.25915751 0 1 58161072 rs71051245 GA G 8203 PASS INDEL;BAVGPOST=0.878;BRSQ=0.742;LDAF=0.2745;AVGPOST=0.8538;RSQ=0.7355;ERATE=0.0121;THETA=0.0006;AC=564;AN=2184 GT:DS:GL:BD 0.25824177 0 1 58161106 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5381;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58161119 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.7669;AVGPOST=0.9946;RSQ=0.9900;ERATE=0.0009;THETA=0.0003;AC=1677;AN=2184 GT:DS:GL:BD 0.76785713 1 1 58161135 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8402;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58161239 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0137;AVGPOST=0.9986;RSQ=0.9610;ERATE=0.0003;THETA=0.0013;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 58161265 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0041;AVGPOST=0.9978;RSQ=0.7802;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58161369 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0072;AVGPOST=0.9984;RSQ=0.9193;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58161382 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.967;LDAF=0.7570;AVGPOST=0.9805;RSQ=0.9630;ERATE=0.0029;THETA=0.0004;AC=1665;AN=2184 GT:DS:GL:BD 0.76236266 1 1 58161391 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0170;AVGPOST=0.9995;RSQ=0.9855;ERATE=0.0004;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 58161398 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58161442 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7766;AVGPOST=0.9959;RSQ=0.9910;ERATE=0.0008;THETA=0.0006;AC=1698;AN=2184 GT:DS:GL:BD 0.77747256 1 1 58161598 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58161620 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0019;AVGPOST=0.9983;RSQ=0.6499;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58161632 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7732;AVGPOST=0.9982;RSQ=0.9962;ERATE=0.0005;THETA=0.0004;AC=1689;AN=2184 GT:DS:GL:BD 0.77335167 1 1 58161760 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2126;AVGPOST=0.9984;RSQ=0.9960;ERATE=0.0004;THETA=0.0005;AC=464;AN=2184 GT:DS:GL:BD 0.21245421 0 1 58161787 . CA C 275 PASS INDEL;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0039;AVGPOST=0.9972;RSQ=0.7168;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58161806 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58162033 rs78740764 A AG 59073 PASS INDEL;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.6027;AVGPOST=0.9970;RSQ=0.9955;ERATE=0.0004;THETA=0.0030;AC=1316;AN=2184 GT:DS:GL:BD 0.60256410 1 1 58162074 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8366;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58162196 . C CT 7702 PASS INDEL;BAVGPOST=0.996;BRSQ=0.979;LDAF=0.0583;AVGPOST=0.9973;RSQ=0.9819;ERATE=0.0003;THETA=0.0007;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 58162240 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5211;AVGPOST=0.9952;RSQ=0.9931;ERATE=0.0007;THETA=0.0009;AC=1136;AN=2184 GT:DS:GL:BD 0.52014655 1 1 58162247 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6070;ERATE=0.0004;THETA=0.0061;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58162302 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0067;AVGPOST=0.9988;RSQ=0.9362;ERATE=0.0003;THETA=0.0028;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58162370 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.8306;AVGPOST=0.9960;RSQ=0.9908;ERATE=0.0007;THETA=0.0004;AC=1814;AN=2184 GT:DS:GL:BD 0.83058608 1 1 58162384 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58162428 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6602;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58162437 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0048;AVGPOST=0.9994;RSQ=0.9394;ERATE=0.0004;THETA=0.0020;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58162457 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6343;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58162481 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6678;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58162616 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.973;LDAF=0.5367;AVGPOST=0.9861;RSQ=0.9791;ERATE=0.0011;THETA=0.0041;AC=1174;AN=2184 GT:DS:GL:BD 0.53754580 1 1 58162647 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4649;ERATE=0.0003;THETA=0.0061;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58162663 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0005;AVGPOST=0.9991;RSQ=0.3266;ERATE=0.0003;THETA=0.0053;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 58162665 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5240;ERATE=0.0004;THETA=0.0170;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58162673 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4917;ERATE=0.0004;THETA=0.0169;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58162726 . CA C 108 PASS INDEL;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6464;ERATE=0.0007;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58162797 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58162853 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0122;AVGPOST=0.9986;RSQ=0.9484;ERATE=0.0003;THETA=0.0033;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58162855 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.973;LDAF=0.4206;AVGPOST=0.9777;RSQ=0.9709;ERATE=0.0013;THETA=0.0067;AC=916;AN=2184 GT:DS:GL:BD 0.41941392 0 1 58162907 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8046;ERATE=0.0005;THETA=0.0268;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58162913 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.954;LDAF=0.2526;AVGPOST=0.9770;RSQ=0.9550;ERATE=0.0020;THETA=0.0177;AC=551;AN=2184 GT:DS:GL:BD 0.25228938 0 1 58163162 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.565;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7643;ERATE=0.0005;THETA=0.0378;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58163185 . C CT 61 PASS INDEL;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5922;ERATE=0.0004;THETA=0.0101;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58163362 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.910;LDAF=0.0258;AVGPOST=0.9952;RSQ=0.9200;ERATE=0.0004;THETA=0.0358;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 58163369 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.937;LDAF=0.3717;AVGPOST=0.9559;RSQ=0.9339;ERATE=0.0063;THETA=0.0052;AC=795;AN=2184 GT:DS:GL:BD 0.36401099 0 1 58163417 . A AG 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.5573;ERATE=0.0006;THETA=0.0235;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58163433 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6453;ERATE=0.0003;THETA=0.0261;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58163463 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.822;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8514;ERATE=0.0004;THETA=0.0248;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58163480 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.955;LDAF=0.0457;AVGPOST=0.9962;RSQ=0.9689;ERATE=0.0005;THETA=0.0045;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 58163523 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.958;LDAF=0.2091;AVGPOST=0.9801;RSQ=0.9542;ERATE=0.0013;THETA=0.0077;AC=449;AN=2184 GT:DS:GL:BD 0.20558608 0 1 58163570 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.728;LDAF=0.0030;AVGPOST=0.9989;RSQ=0.8468;ERATE=0.0004;THETA=0.0075;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58163723 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0032;AVGPOST=0.9992;RSQ=0.8819;ERATE=0.0004;THETA=0.0075;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58163931 . A AT 26 PASS INDEL;BAVGPOST=0.997;BRSQ=0.722;LDAF=0.0053;AVGPOST=0.9946;RSQ=0.5818;ERATE=0.0011;THETA=0.0029;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58163962 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7666;ERATE=0.0005;THETA=0.0085;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58164020 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.806;LDAF=0.0095;AVGPOST=0.9955;RSQ=0.8031;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58164023 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0232;AVGPOST=0.9986;RSQ=0.9755;ERATE=0.0004;THETA=0.0135;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 58164050 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0047;AVGPOST=0.9979;RSQ=0.8308;ERATE=0.0009;THETA=0.0075;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58164124 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.3628;AVGPOST=0.9907;RSQ=0.9845;ERATE=0.0007;THETA=0.0009;AC=794;AN=2184 GT:DS:GL:BD 0.36355311 0 1 58164136 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.803;LDAF=0.0039;AVGPOST=0.9980;RSQ=0.8020;ERATE=0.0004;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58164138 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58164181 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6677;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58164318 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0302;AVGPOST=0.9998;RSQ=0.9972;ERATE=0.0003;THETA=0.0005;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 58164358 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0724;AVGPOST=0.9957;RSQ=0.9756;ERATE=0.0003;THETA=0.0005;AC=156;AN=2184 GT:DS:GL:BD 0.07142857 0 1 58164459 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.714;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5425;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58164636 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8005;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58164691 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0059;AVGPOST=0.9981;RSQ=0.8961;ERATE=0.0004;THETA=0.0017;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58164765 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0084;AVGPOST=0.9975;RSQ=0.8834;ERATE=0.0004;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58164894 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0302;AVGPOST=0.9997;RSQ=0.9952;ERATE=0.0003;THETA=0.0005;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 58164917 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5015;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58164939 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0036;AVGPOST=0.9980;RSQ=0.7756;ERATE=0.0005;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58164958 . AC A 45 PASS INDEL;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0030;AVGPOST=0.9958;RSQ=0.4769;ERATE=0.0007;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58164991 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3182;AVGPOST=0.9965;RSQ=0.9937;ERATE=0.0005;THETA=0.0009;AC=693;AN=2184 GT:DS:GL:BD 0.31730768 0 1 58164994 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0061;AVGPOST=0.9988;RSQ=0.9136;ERATE=0.0003;THETA=0.0021;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58165149 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.6226;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58165251 . TAGA T 29 PASS INDEL;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4881;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58165365 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.971;LDAF=0.0238;AVGPOST=0.9979;RSQ=0.9641;ERATE=0.0004;THETA=0.0005;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 58165404 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5273;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58165569 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6377;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58165585 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0093;AVGPOST=0.9984;RSQ=0.9245;ERATE=0.0010;THETA=0.0009;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58165648 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5876;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58165653 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6473;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58165719 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.4461;AVGPOST=0.9964;RSQ=0.9946;ERATE=0.0004;THETA=0.0006;AC=973;AN=2184 GT:DS:GL:BD 0.44551283 0 1 58165789 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0024;AVGPOST=0.9991;RSQ=0.8659;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58165817 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.710;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6902;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58165936 . CT C 1132 PASS INDEL;BAVGPOST=0.995;BRSQ=0.859;LDAF=0.0134;AVGPOST=0.9917;RSQ=0.7468;ERATE=0.0004;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58166006 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58166121 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58166157 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.5670;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58166187 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0018;AVGPOST=0.9995;RSQ=0.8803;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58166239 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0019;AVGPOST=0.9994;RSQ=0.8648;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58166299 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58166353 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58166462 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0026;AVGPOST=0.9979;RSQ=0.7265;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58166546 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0022;AVGPOST=0.9979;RSQ=0.6051;ERATE=0.0010;THETA=0.0017;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58166730 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.942;BRSQ=0.896;LDAF=0.3875;AVGPOST=0.9576;RSQ=0.9346;ERATE=0.0041;THETA=0.0008;AC=853;AN=2184 GT:DS:GL:BD 0.39056778 0 1 58166884 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.684;LDAF=0.0022;AVGPOST=0.9965;RSQ=0.3074;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58166922 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0075;AVGPOST=0.9994;RSQ=0.9622;ERATE=0.0005;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58167134 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0535;AVGPOST=0.9968;RSQ=0.9777;ERATE=0.0006;THETA=0.0006;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 58167223 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.789;LDAF=0.0233;AVGPOST=0.9905;RSQ=0.8537;ERATE=0.0006;THETA=0.0004;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 58167347 . CT C 82 PASS INDEL;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0029;AVGPOST=0.9992;RSQ=0.8748;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58167379 . TA T 509 PASS INDEL;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0124;AVGPOST=0.9969;RSQ=0.8920;ERATE=0.0006;THETA=0.0008;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58167397 . C CA 158 PASS INDEL;BAVGPOST=0.992;BRSQ=0.575;LDAF=0.0162;AVGPOST=0.9794;RSQ=0.4863;ERATE=0.0042;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58167416 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3231;AVGPOST=0.9962;RSQ=0.9934;ERATE=0.0008;THETA=0.0005;AC=703;AN=2184 GT:DS:GL:BD 0.32188645 0 1 58167526 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.829;LDAF=0.0049;AVGPOST=0.9984;RSQ=0.8748;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58167558 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6164;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58167599 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0085;AVGPOST=0.9995;RSQ=0.9724;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58167773 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9524;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58167827 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0042;AVGPOST=0.9987;RSQ=0.8723;ERATE=0.0005;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58167834 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8070;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58167947 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0231;AVGPOST=0.9993;RSQ=0.9863;ERATE=0.0003;THETA=0.0003;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 58168112 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6277;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58168217 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7877;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58168332 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0451;AVGPOST=0.9989;RSQ=0.9917;ERATE=0.0003;THETA=0.0003;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 58168348 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0049;AVGPOST=0.9995;RSQ=0.9538;ERATE=0.0007;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58168438 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5711;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58168463 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4109;AVGPOST=0.9966;RSQ=0.9947;ERATE=0.0004;THETA=0.0008;AC=894;AN=2184 GT:DS:GL:BD 0.40934065 0 1 58168475 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0034;AVGPOST=0.9994;RSQ=0.9188;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58168516 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0053;AVGPOST=0.9988;RSQ=0.9187;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58168517 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.981;LDAF=0.4069;AVGPOST=0.9948;RSQ=0.9919;ERATE=0.0008;THETA=0.0003;AC=890;AN=2184 GT:DS:GL:BD 0.40750915 0 1 58168529 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5334;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58168542 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.4097;AVGPOST=0.9986;RSQ=0.9974;ERATE=0.0005;THETA=0.0004;AC=894;AN=2184 GT:DS:GL:BD 0.40934065 0 1 58168558 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0032;AVGPOST=0.9976;RSQ=0.7091;ERATE=0.0007;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58168646 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0035;AVGPOST=0.9992;RSQ=0.9036;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58168679 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6765;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58168709 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.982;LDAF=0.3164;AVGPOST=0.9851;RSQ=0.9722;ERATE=0.0009;THETA=0.0005;AC=690;AN=2184 GT:DS:GL:BD 0.31593406 0 1 58168724 . GA G 4667 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0339;AVGPOST=0.9990;RSQ=0.9877;ERATE=0.0003;THETA=0.0007;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 58168888 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58168934 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0063;AVGPOST=0.9985;RSQ=0.9133;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58168935 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0153;AVGPOST=0.9963;RSQ=0.8993;ERATE=0.0004;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 58168951 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.921;LDAF=0.0156;AVGPOST=0.9986;RSQ=0.9616;ERATE=0.0004;THETA=0.0004;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58168959 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5246;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58168978 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0404;AVGPOST=0.9987;RSQ=0.9883;ERATE=0.0003;THETA=0.0003;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 58169017 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4085;AVGPOST=0.9984;RSQ=0.9973;ERATE=0.0004;THETA=0.0002;AC=891;AN=2184 GT:DS:GL:BD 0.40796703 0 1 58169051 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.829;LDAF=0.0028;AVGPOST=0.9988;RSQ=0.8194;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58169086 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.4090;AVGPOST=0.9980;RSQ=0.9963;ERATE=0.0008;THETA=0.0003;AC=892;AN=2184 GT:DS:GL:BD 0.40842491 0 1 58169099 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58169108 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.731;LDAF=0.0033;AVGPOST=0.9954;RSQ=0.5126;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58169219 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4085;AVGPOST=0.9970;RSQ=0.9952;ERATE=0.0004;THETA=0.0003;AC=890;AN=2184 GT:DS:GL:BD 0.40750915 0 1 58169339 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8699;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58169352 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4084;AVGPOST=0.9980;RSQ=0.9965;ERATE=0.0003;THETA=0.0004;AC=891;AN=2184 GT:DS:GL:BD 0.40796703 0 1 58169416 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4080;AVGPOST=0.9983;RSQ=0.9969;ERATE=0.0004;THETA=0.0003;AC=891;AN=2184 GT:DS:GL:BD 0.40796703 0 1 58169427 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4084;AVGPOST=0.9981;RSQ=0.9966;ERATE=0.0006;THETA=0.0005;AC=891;AN=2184 GT:DS:GL:BD 0.40796703 0 1 58169450 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58169457 . TA T 12842 PASS INDEL;BAVGPOST=0.993;BRSQ=0.975;LDAF=0.0822;AVGPOST=0.9959;RSQ=0.9818;ERATE=0.0010;THETA=0.0010;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 58169470 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.882;LDAF=0.0138;AVGPOST=0.9976;RSQ=0.9241;ERATE=0.0003;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 58169536 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.985;LDAF=0.3175;AVGPOST=0.9957;RSQ=0.9922;ERATE=0.0011;THETA=0.0006;AC=694;AN=2184 GT:DS:GL:BD 0.31776556 0 1 58169540 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.733;LDAF=0.0025;AVGPOST=0.9984;RSQ=0.7329;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58169696 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4082;AVGPOST=0.9992;RSQ=0.9985;ERATE=0.0006;THETA=0.0001;AC=890;AN=2184 GT:DS:GL:BD 0.40750915 0 1 58169712 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58169901 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58170013 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0003;AVGPOST=0.9994;RSQ=0.3958;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 58170042 . CTAATT C 260 PASS INDEL;BAVGPOST=1.000;BRSQ=0.701;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3899;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58170165 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4079;AVGPOST=0.9973;RSQ=0.9962;ERATE=0.0004;THETA=0.0005;AC=889;AN=2184 GT:DS:GL:BD 0.40705130 0 1 58170175 . A AC 44 PASS INDEL;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5170;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58170218 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4079;AVGPOST=0.9989;RSQ=0.9982;ERATE=0.0004;THETA=0.0001;AC=890;AN=2184 GT:DS:GL:BD 0.40750915 0 1 58170299 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9302;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58170339 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0073;AVGPOST=0.9996;RSQ=0.9778;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58170550 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.950;LDAF=0.3875;AVGPOST=0.9746;RSQ=0.9599;ERATE=0.0059;THETA=0.0003;AC=850;AN=2184 GT:DS:GL:BD 0.38919413 0 1 58170569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.713;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7221;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58170821 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5209;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58170831 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4086;AVGPOST=0.9978;RSQ=0.9959;ERATE=0.0007;THETA=0.0004;AC=890;AN=2184 GT:DS:GL:BD 0.40750915 0 1 58170846 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6616;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58170857 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7762;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58170940 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.789;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8107;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58170996 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0052;AVGPOST=0.9982;RSQ=0.8944;ERATE=0.0005;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58171074 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7770;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58171106 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.836;LDAF=0.0044;AVGPOST=0.9985;RSQ=0.8763;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58171125 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5542;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58171178 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.835;LDAF=0.0124;AVGPOST=0.9946;RSQ=0.8399;ERATE=0.0007;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58171251 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.731;LDAF=0.0027;AVGPOST=0.9980;RSQ=0.6819;ERATE=0.0008;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58171288 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3177;AVGPOST=0.9971;RSQ=0.9950;ERATE=0.0005;THETA=0.0004;AC=690;AN=2184 GT:DS:GL:BD 0.31593406 0 1 58171383 . A AT 8 PASS INDEL;BAVGPOST=0.999;BRSQ=0.599;LDAF=0.0040;AVGPOST=0.9968;RSQ=0.6489;ERATE=0.0007;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58171438 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6465;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58171466 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7512;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58171511 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.753;LDAF=0.0076;AVGPOST=0.9971;RSQ=0.8593;ERATE=0.0004;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58171650 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.583;LDAF=0.0023;AVGPOST=0.9968;RSQ=0.4852;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58171687 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0064;AVGPOST=0.9981;RSQ=0.8780;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58171705 rs10590038 GTTTATAC G 4596 PASS INDEL;BAVGPOST=0.992;BRSQ=0.919;LDAF=0.0354;AVGPOST=0.9941;RSQ=0.9420;ERATE=0.0004;THETA=0.0005;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 58171906 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6795;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58171935 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.708;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5771;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58171967 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7581;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58172058 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0035;AVGPOST=0.9988;RSQ=0.8603;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58172078 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.700;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4619;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58172406 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8155;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58172420 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8496;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58172470 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0085;AVGPOST=0.9987;RSQ=0.9314;ERATE=0.0005;THETA=0.0008;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58172471 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5417;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58172472 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0058;AVGPOST=0.9980;RSQ=0.9005;ERATE=0.0006;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58172543 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0035;AVGPOST=0.9960;RSQ=0.5164;ERATE=0.0007;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58172597 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0108;AVGPOST=0.9983;RSQ=0.9313;ERATE=0.0004;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58172598 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.488;LDAF=0.0032;AVGPOST=0.9959;RSQ=0.4386;ERATE=0.0007;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58172619 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.600;LDAF=0.0045;AVGPOST=0.9970;RSQ=0.6955;ERATE=0.0006;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58172655 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.956;LDAF=0.0652;AVGPOST=0.9933;RSQ=0.9621;ERATE=0.0007;THETA=0.0005;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 58172695 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.555;LDAF=0.0021;AVGPOST=0.9978;RSQ=0.5765;ERATE=0.0004;THETA=0.0037;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58172772 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.887;LDAF=0.0276;AVGPOST=0.9916;RSQ=0.8756;ERATE=0.0008;THETA=0.0004;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 58172777 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.3173;AVGPOST=0.9936;RSQ=0.9894;ERATE=0.0006;THETA=0.0006;AC=691;AN=2184 GT:DS:GL:BD 0.31639194 0 1 58172854 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6112;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58172909 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58172957 . A AT 380 PASS INDEL;BAVGPOST=0.993;BRSQ=0.516;LDAF=0.0161;AVGPOST=0.9773;RSQ=0.4084;ERATE=0.0053;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58173129 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0457;AVGPOST=0.9988;RSQ=0.9899;ERATE=0.0004;THETA=0.0002;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 58173181 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58173202 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.1864;AVGPOST=0.9979;RSQ=0.9940;ERATE=0.0005;THETA=0.0005;AC=406;AN=2184 GT:DS:GL:BD 0.18589744 0 1 58173349 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0143;AVGPOST=0.9989;RSQ=0.9667;ERATE=0.0004;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58173520 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0066;AVGPOST=0.9967;RSQ=0.8362;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58173591 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0020;AVGPOST=0.9978;RSQ=0.6520;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58173593 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.659;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5438;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58173714 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7748;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58173779 . G GC 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5709;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58173935 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0512;AVGPOST=0.9993;RSQ=0.9942;ERATE=0.0005;THETA=0.0004;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 58173999 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7305;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58174168 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7089;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58174183 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.6312;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58174209 . CATGA C 2663 PASS INDEL;BAVGPOST=0.998;BRSQ=0.954;LDAF=0.0130;AVGPOST=0.9972;RSQ=0.9161;ERATE=0.0003;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58174335 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.811;LDAF=0.0024;AVGPOST=0.9973;RSQ=0.5836;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58174373 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58174459 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9990;RSQ=0.9384;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58174744 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0105;AVGPOST=0.9945;RSQ=0.8051;ERATE=0.0006;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58174756 . A AT 32 PASS INDEL;BAVGPOST=0.998;BRSQ=0.587;LDAF=0.0027;AVGPOST=0.9976;RSQ=0.6219;ERATE=0.0010;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58174787 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.839;LDAF=0.0135;AVGPOST=0.9955;RSQ=0.8643;ERATE=0.0005;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 58174840 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0083;AVGPOST=0.9998;RSQ=0.9868;ERATE=0.0003;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58174960 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7899;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58175036 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0030;AVGPOST=0.9976;RSQ=0.6761;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58175122 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.785;LDAF=0.0542;AVGPOST=0.9725;RSQ=0.8109;ERATE=0.0037;THETA=0.0004;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 58175124 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.855;LDAF=0.0229;AVGPOST=0.9819;RSQ=0.6793;ERATE=0.0038;THETA=0.0006;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 58175156 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7493;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58175252 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3214;AVGPOST=0.9967;RSQ=0.9939;ERATE=0.0010;THETA=0.0007;AC=699;AN=2184 GT:DS:GL:BD 0.32005495 0 1 58175304 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0126;AVGPOST=0.9993;RSQ=0.9741;ERATE=0.0004;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58175325 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3429;AVGPOST=0.9970;RSQ=0.9945;ERATE=0.0007;THETA=0.0007;AC=747;AN=2184 GT:DS:GL:BD 0.34203297 0 1 58175363 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58175418 . AT A 44 PASS INDEL;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5576;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58175530 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3250;AVGPOST=0.9977;RSQ=0.9961;ERATE=0.0006;THETA=0.0006;AC=706;AN=2184 GT:DS:GL:BD 0.32326007 0 1 58175604 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.989;LDAF=0.3135;AVGPOST=0.9960;RSQ=0.9930;ERATE=0.0008;THETA=0.0003;AC=681;AN=2184 GT:DS:GL:BD 0.31181318 0 1 58175655 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1896;AVGPOST=0.9963;RSQ=0.9911;ERATE=0.0005;THETA=0.0004;AC=411;AN=2184 GT:DS:GL:BD 0.18818681 0 1 58175657 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.815;LDAF=0.0034;AVGPOST=0.9971;RSQ=0.6435;ERATE=0.0005;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58175913 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9544;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58175917 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8313;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58175961 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.5798;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58175994 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4303;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58176005 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0082;AVGPOST=0.9986;RSQ=0.9396;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58176134 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.821;LDAF=0.0044;AVGPOST=0.9972;RSQ=0.7721;ERATE=0.0005;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58176154 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6711;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58176191 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58176214 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0095;AVGPOST=0.9988;RSQ=0.9520;ERATE=0.0004;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58176257 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.918;LDAF=0.0428;AVGPOST=0.9924;RSQ=0.9268;ERATE=0.0003;THETA=0.0004;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 58176313 . G GT 214 PASS INDEL;BAVGPOST=0.988;BRSQ=0.805;LDAF=0.0409;AVGPOST=0.9678;RSQ=0.6911;ERATE=0.0066;THETA=0.0004;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 58176321 . TG T 470 PASS INDEL;BAVGPOST=0.987;BRSQ=0.700;LDAF=0.0292;AVGPOST=0.9776;RSQ=0.7011;ERATE=0.0033;THETA=0.0003;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 58176322 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.865;LDAF=0.0276;AVGPOST=0.9908;RSQ=0.8695;ERATE=0.0014;THETA=0.0004;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 58176324 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.4057;AVGPOST=0.9960;RSQ=0.9939;ERATE=0.0007;THETA=0.0004;AC=884;AN=2184 GT:DS:GL:BD 0.40476191 0 1 58176329 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4970;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58176365 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0241;AVGPOST=0.9993;RSQ=0.9874;ERATE=0.0004;THETA=0.0002;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 58176417 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.822;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6523;ERATE=0.0003;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58176422 . AGT A 25 PASS INDEL;BAVGPOST=0.992;BRSQ=0.608;LDAF=0.0178;AVGPOST=0.9778;RSQ=0.5047;ERATE=0.0072;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58176434 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9265;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58176476 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58176488 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7882;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58176504 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6707;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58176510 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0032;AVGPOST=0.9973;RSQ=0.7076;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58176589 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8710;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58176616 . A AG 15 PASS INDEL;BAVGPOST=0.999;BRSQ=0.675;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8116;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58176697 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7402;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58176699 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58176864 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5687;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58176872 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58176948 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4608;AVGPOST=0.9996;RSQ=0.9993;ERATE=0.0003;THETA=0.0004;AC=1005;AN=2184 GT:DS:GL:BD 0.46016484 0 1 58176985 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8788;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58177003 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4530;AVGPOST=0.9983;RSQ=0.9973;ERATE=0.0005;THETA=0.0003;AC=987;AN=2184 GT:DS:GL:BD 0.45192307 0 1 58177134 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7640;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58177169 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7225;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58177195 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.7911;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58177204 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9895;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58177257 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.9978;AVGPOST=0.9982;RSQ=0.6454;ERATE=0.0007;THETA=0.0004;AC=2181;AN=2184 GT:DS:GL:BD 0.99862635 1 1 58177259 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58177562 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.720;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8611;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58177610 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.4254;AVGPOST=0.9968;RSQ=0.9947;ERATE=0.0007;THETA=0.0003;AC=928;AN=2184 GT:DS:GL:BD 0.42490843 0 1 58177746 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0031;AVGPOST=0.9980;RSQ=0.7285;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58177885 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8821;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58177914 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.810;LDAF=0.0025;AVGPOST=0.9981;RSQ=0.7091;ERATE=0.0010;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58177971 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0026;AVGPOST=0.9970;RSQ=0.5127;ERATE=0.0009;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58178068 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6683;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58178114 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8996;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58178158 . TA T 170 PASS INDEL;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0017;AVGPOST=0.9980;RSQ=0.5609;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58178199 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7863;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58178225 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.847;LDAF=0.0047;AVGPOST=0.9970;RSQ=0.7822;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58178278 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.4250;AVGPOST=0.9992;RSQ=0.9985;ERATE=0.0004;THETA=0.0005;AC=927;AN=2184 GT:DS:GL:BD 0.42445055 0 1 58178319 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5407;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58178338 . T TG 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58178350 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4221;AVGPOST=0.9965;RSQ=0.9942;ERATE=0.0007;THETA=0.0004;AC=921;AN=2184 GT:DS:GL:BD 0.42170331 0 1 58178590 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58178622 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8148;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58178685 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0057;AVGPOST=0.9989;RSQ=0.9293;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58178715 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3172;AVGPOST=0.9983;RSQ=0.9968;ERATE=0.0005;THETA=0.0005;AC=691;AN=2184 GT:DS:GL:BD 0.31639194 0 1 58178767 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8580;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58178922 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6374;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58179026 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6738;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58179244 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6141;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58179249 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58179257 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58179263 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6710;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58179361 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0083;AVGPOST=0.9998;RSQ=0.9868;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58179395 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0037;AVGPOST=0.9993;RSQ=0.9238;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58179438 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58179514 . TAAG T 908 PASS INDEL;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0087;AVGPOST=0.9993;RSQ=0.9658;ERATE=0.0004;THETA=0.0008;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58179562 . AG A 2647 PASS INDEL;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0253;AVGPOST=0.9994;RSQ=0.9893;ERATE=0.0003;THETA=0.0007;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 58179597 . TTGTC T 4709 PASS INDEL;BAVGPOST=0.998;BRSQ=0.977;LDAF=0.0257;AVGPOST=0.9985;RSQ=0.9746;ERATE=0.0004;THETA=0.0005;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 58179647 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7955;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58179690 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6049;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58179739 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9172;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58179847 . T TAC 22145 PASS INDEL;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4486;AVGPOST=0.9907;RSQ=0.9858;ERATE=0.0029;THETA=0.0006;AC=978;AN=2184 GT:DS:GL:BD 0.44780219 0 1 58179884 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0063;AVGPOST=0.9989;RSQ=0.9285;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58179918 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.848;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7638;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58179973 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58180011 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3801;AVGPOST=0.9973;RSQ=0.9958;ERATE=0.0004;THETA=0.0003;AC=829;AN=2184 GT:DS:GL:BD 0.37957877 0 1 58180026 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9608;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58180051 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.7491;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58180155 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0083;AVGPOST=0.9999;RSQ=0.9920;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58180267 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4410;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58180288 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0104;AVGPOST=0.9992;RSQ=0.9649;ERATE=0.0005;THETA=0.0002;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58180301 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8462;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58180347 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0897;AVGPOST=0.9987;RSQ=0.9949;ERATE=0.0004;THETA=0.0005;AC=195;AN=2184 GT:DS:GL:BD 0.08928572 0 1 58180448 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.9098;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58180507 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.7557;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58180520 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9700;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58180541 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9451;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58180843 . CA C 63 PASS INDEL;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6520;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58180849 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58180878 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0029;AVGPOST=0.9992;RSQ=0.8771;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58180925 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8061;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58180930 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0007;AVGPOST=0.9992;RSQ=0.4526;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58181093 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58181145 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0092;AVGPOST=0.9996;RSQ=0.9810;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58181165 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.3165;AVGPOST=0.9955;RSQ=0.9918;ERATE=0.0006;THETA=0.0002;AC=690;AN=2184 GT:DS:GL:BD 0.31593406 0 1 58181208 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4494;AVGPOST=0.9967;RSQ=0.9948;ERATE=0.0009;THETA=0.0002;AC=981;AN=2184 GT:DS:GL:BD 0.44917583 0 1 58181267 . AG A 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.762;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58181305 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0063;AVGPOST=0.9979;RSQ=0.8881;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58181313 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5194;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58181389 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.966;LDAF=0.4142;AVGPOST=0.9773;RSQ=0.9674;ERATE=0.0045;THETA=0.0003;AC=908;AN=2184 GT:DS:GL:BD 0.41575092 0 1 58181417 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0044;AVGPOST=0.9984;RSQ=0.8563;ERATE=0.0005;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58181433 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6066;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58181546 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8286;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58181616 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0529;AVGPOST=0.9990;RSQ=0.9927;ERATE=0.0003;THETA=0.0004;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 58181869 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0026;AVGPOST=0.9971;RSQ=0.5691;ERATE=0.0006;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58181913 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7393;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58181929 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6719;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58181930 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8440;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58181992 . TA T 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58182004 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58182083 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.7737;AVGPOST=0.9971;RSQ=0.9934;ERATE=0.0006;THETA=0.0005;AC=1689;AN=2184 GT:DS:GL:BD 0.77335167 1 1 58182141 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0077;AVGPOST=0.9993;RSQ=0.9632;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58182151 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.985;LDAF=0.8176;AVGPOST=0.9943;RSQ=0.9863;ERATE=0.0003;THETA=0.0003;AC=1785;AN=2184 GT:DS:GL:BD 0.81730771 1 1 58182364 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0007;AVGPOST=0.9992;RSQ=0.5995;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58182587 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4474;AVGPOST=0.9988;RSQ=0.9981;ERATE=0.0004;THETA=0.0003;AC=977;AN=2184 GT:DS:GL:BD 0.44734433 0 1 58182643 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0105;AVGPOST=0.9988;RSQ=0.9540;ERATE=0.0005;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58182685 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0532;AVGPOST=0.9983;RSQ=0.9880;ERATE=0.0004;THETA=0.0005;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 58182695 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.574;LDAF=0.0031;AVGPOST=0.9967;RSQ=0.5765;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58182793 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0349;AVGPOST=0.9986;RSQ=0.9846;ERATE=0.0004;THETA=0.0034;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 58182836 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0085;AVGPOST=0.9961;RSQ=0.8371;ERATE=0.0005;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58182874 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.485;LDAF=0.0066;AVGPOST=0.9886;RSQ=0.3242;ERATE=0.0017;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58182944 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.976;LDAF=0.3094;AVGPOST=0.9863;RSQ=0.9765;ERATE=0.0033;THETA=0.0002;AC=674;AN=2184 GT:DS:GL:BD 0.30860806 0 1 58182956 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4956;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58183046 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0120;AVGPOST=0.9995;RSQ=0.9785;ERATE=0.0003;THETA=0.0002;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58183122 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.5864;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58183292 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5598;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58183431 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0022;AVGPOST=0.9964;RSQ=0.3768;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58183447 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3204;AVGPOST=0.9960;RSQ=0.9930;ERATE=0.0008;THETA=0.0003;AC=697;AN=2184 GT:DS:GL:BD 0.31913918 0 1 58183513 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3207;AVGPOST=0.9973;RSQ=0.9955;ERATE=0.0006;THETA=0.0004;AC=699;AN=2184 GT:DS:GL:BD 0.32005495 0 1 58183524 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7877;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58183610 rs3081016 T TAG 41618 PASS INDEL;BAVGPOST=0.984;BRSQ=0.978;LDAF=0.4279;AVGPOST=0.9871;RSQ=0.9805;ERATE=0.0013;THETA=0.0010;AC=936;AN=2184 GT:DS:GL:BD 0.42857143 0 1 58183614 . G GAT 12140 PASS INDEL;BAVGPOST=0.966;BRSQ=0.941;LDAF=0.4012;AVGPOST=0.9461;RSQ=0.9167;ERATE=0.0119;THETA=0.0016;AC=880;AN=2184 GT:DS:GL:BD 0.40293041 0 1 58183633 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.976;LDAF=0.0347;AVGPOST=0.9985;RSQ=0.9826;ERATE=0.0003;THETA=0.0002;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 58183645 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.6163;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58183668 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58183838 . A AC 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.706;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5869;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58183874 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8947;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58184149 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.780;LDAF=0.0067;AVGPOST=0.9984;RSQ=0.8981;ERATE=0.0005;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58184274 . CTTGA C 795 PASS INDEL;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0093;AVGPOST=0.9987;RSQ=0.9373;ERATE=0.0004;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58184305 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8538;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58184341 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58184362 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58184362 . G GT 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6195;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58184400 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.680;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0003;THETA=0.0059;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58184595 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0056;AVGPOST=0.9975;RSQ=0.8620;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58184731 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.981;LDAF=0.7699;AVGPOST=0.9903;RSQ=0.9798;ERATE=0.0011;THETA=0.0003;AC=1684;AN=2184 GT:DS:GL:BD 0.77106225 1 1 58184786 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8136;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58184802 . A AT 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.749;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7897;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58184970 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.7734;AVGPOST=0.9959;RSQ=0.9912;ERATE=0.0007;THETA=0.0031;AC=1688;AN=2184 GT:DS:GL:BD 0.77289379 1 1 58185021 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.717;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.3193;ERATE=0.0009;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58185022 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.926;LDAF=0.0136;AVGPOST=0.9965;RSQ=0.9035;ERATE=0.0004;THETA=0.0008;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 58185023 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.3496;AVGPOST=0.9960;RSQ=0.9935;ERATE=0.0006;THETA=0.0004;AC=761;AN=2184 GT:DS:GL:BD 0.34844321 0 1 58185042 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.981;LDAF=0.0906;AVGPOST=0.9949;RSQ=0.9758;ERATE=0.0006;THETA=0.0020;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 58185117 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2703;AVGPOST=0.9983;RSQ=0.9966;ERATE=0.0004;THETA=0.0004;AC=589;AN=2184 GT:DS:GL:BD 0.26968864 0 1 58185121 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0129;AVGPOST=0.9995;RSQ=0.9856;ERATE=0.0003;THETA=0.0017;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 58185220 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2676;AVGPOST=0.9987;RSQ=0.9973;ERATE=0.0005;THETA=0.0002;AC=583;AN=2184 GT:DS:GL:BD 0.26694140 0 1 58185244 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0093;AVGPOST=0.9996;RSQ=0.9787;ERATE=0.0004;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58185265 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0036;AVGPOST=0.9997;RSQ=0.9656;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58185310 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58185471 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0100;AVGPOST=0.9991;RSQ=0.9684;ERATE=0.0004;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58185554 . T TA 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4837;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58185660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58185696 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0025;AVGPOST=0.9994;RSQ=0.9009;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58185776 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7668;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58185872 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58185876 . C CT 136 PASS INDEL;BAVGPOST=0.999;BRSQ=0.751;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5018;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58185961 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58186065 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2750;AVGPOST=0.9979;RSQ=0.9958;ERATE=0.0005;THETA=0.0005;AC=600;AN=2184 GT:DS:GL:BD 0.27472529 0 1 58186102 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6883;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58186126 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0541;AVGPOST=0.9995;RSQ=0.9965;ERATE=0.0003;THETA=0.0004;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 58186129 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3837;AVGPOST=0.9981;RSQ=0.9972;ERATE=0.0005;THETA=0.0008;AC=838;AN=2184 GT:DS:GL:BD 0.38369963 0 1 58186218 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9144;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58186328 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0031;AVGPOST=0.9988;RSQ=0.8655;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58186370 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9042;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58186372 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58186553 . CCT C 322 PASS INDEL;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0024;AVGPOST=0.9992;RSQ=0.8456;ERATE=0.0004;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58186618 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.6132;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58186638 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7277;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58186641 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2693;AVGPOST=0.9985;RSQ=0.9968;ERATE=0.0004;THETA=0.0004;AC=587;AN=2184 GT:DS:GL:BD 0.26877290 0 1 58186694 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3829;AVGPOST=0.9989;RSQ=0.9982;ERATE=0.0003;THETA=0.0003;AC=836;AN=2184 GT:DS:GL:BD 0.38278389 0 1 58186911 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.2405;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 58186913 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0485;AVGPOST=0.9995;RSQ=0.9952;ERATE=0.0003;THETA=0.0017;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 58187004 . AG A 169 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=0.9985;RSQ=0.6366;ERATE=0.0014;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58187039 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4869;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58187041 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8987;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58187133 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0097;AVGPOST=0.9996;RSQ=0.9832;ERATE=0.0003;THETA=0.0010;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58187136 . T TA 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6942;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58187142 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.7246;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58187195 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5607;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58187209 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9673;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58187243 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.9015;ERATE=0.0006;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58187269 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0004;AVGPOST=0.9992;RSQ=0.2049;ERATE=0.0004;THETA=0.0007;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 58187393 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.751;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6633;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58187421 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7270;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58187445 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0018;AVGPOST=0.9997;RSQ=0.9264;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58187449 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1885;AVGPOST=0.9991;RSQ=0.9976;ERATE=0.0004;THETA=0.0004;AC=410;AN=2184 GT:DS:GL:BD 0.18772894 0 1 58187766 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58187838 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.931;LDAF=0.0177;AVGPOST=0.9971;RSQ=0.9395;ERATE=0.0004;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 58187848 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58187880 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3280;AVGPOST=0.9937;RSQ=0.9901;ERATE=0.0022;THETA=0.0017;AC=714;AN=2184 GT:DS:GL:BD 0.32692307 0 1 58188081 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7655;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58188186 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0148;AVGPOST=0.9976;RSQ=0.9381;ERATE=0.0005;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58188248 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3669;AVGPOST=0.9963;RSQ=0.9948;ERATE=0.0009;THETA=0.0004;AC=798;AN=2184 GT:DS:GL:BD 0.36538461 0 1 58188383 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.7890;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58188496 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1902;AVGPOST=0.9990;RSQ=0.9977;ERATE=0.0003;THETA=0.0025;AC=414;AN=2184 GT:DS:GL:BD 0.18956044 0 1 58188517 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0105;AVGPOST=0.9991;RSQ=0.9706;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58188553 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0310;AVGPOST=0.9969;RSQ=0.9654;ERATE=0.0004;THETA=0.0009;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 58188554 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0035;AVGPOST=0.9992;RSQ=0.9119;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58188616 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7590;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58188652 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58188695 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.844;LDAF=0.0064;AVGPOST=0.9987;RSQ=0.9080;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58188759 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58188868 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0322;AVGPOST=0.9995;RSQ=0.9934;ERATE=0.0003;THETA=0.0012;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 58189175 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6430;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58189247 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8308;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58189248 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9420;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58189268 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7425;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58189379 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0038;AVGPOST=0.9991;RSQ=0.9130;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58189394 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58189395 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6860;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58189402 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58189436 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0029;AVGPOST=0.9992;RSQ=0.9114;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58189463 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8377;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58189537 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.590;LDAF=0.0026;AVGPOST=0.9987;RSQ=0.8072;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58189617 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0027;AVGPOST=0.9986;RSQ=0.8140;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58189709 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0118;AVGPOST=0.9981;RSQ=0.9460;ERATE=0.0004;THETA=0.0014;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58189716 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0031;AVGPOST=0.9991;RSQ=0.8766;ERATE=0.0003;THETA=0.0044;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58189769 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0059;AVGPOST=0.9990;RSQ=0.9210;ERATE=0.0004;THETA=0.0011;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58189844 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0246;AVGPOST=0.9975;RSQ=0.9694;ERATE=0.0003;THETA=0.0007;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 58189936 . GA G 148 PASS INDEL;BAVGPOST=0.994;BRSQ=0.666;LDAF=0.0116;AVGPOST=0.9945;RSQ=0.8024;ERATE=0.0007;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58189954 . GGAAC G 2147 PASS INDEL;BAVGPOST=0.807;BRSQ=0.556;LDAF=0.2185;AVGPOST=0.8560;RSQ=0.6945;ERATE=0.0040;THETA=0.0004;AC=434;AN=2184 GT:DS:GL:BD 0.19871795 0 1 58189958 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.845;LDAF=0.0806;AVGPOST=0.9695;RSQ=0.8649;ERATE=0.0019;THETA=0.0004;AC=162;AN=2184 GT:DS:GL:BD 0.07417583 0 1 58189958 . CGAAG C 2609 PASS INDEL;BAVGPOST=0.771;BRSQ=0.518;LDAF=0.2340;AVGPOST=0.8741;RSQ=0.7477;ERATE=0.0014;THETA=0.0010;AC=496;AN=2184 GT:DS:GL:BD 0.22710623 0 1 58189968 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.865;BRSQ=0.518;LDAF=0.1519;AVGPOST=0.8983;RSQ=0.7109;ERATE=0.0035;THETA=0.0003;AC=304;AN=2184 GT:DS:GL:BD 0.13919415 0 1 58189972 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.855;BRSQ=0.572;LDAF=0.2296;AVGPOST=0.8490;RSQ=0.6636;ERATE=0.0084;THETA=0.0016;AC=474;AN=2184 GT:DS:GL:BD 0.21703297 0 1 58190114 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0035;AVGPOST=0.9982;RSQ=0.7946;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58190190 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7354;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58190274 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58190342 . T TC 12 PASS INDEL;BAVGPOST=0.999;BRSQ=0.695;LDAF=0.0029;AVGPOST=0.9965;RSQ=0.5411;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58190387 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0020;AVGPOST=0.9989;RSQ=0.7490;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58190389 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5631;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58190409 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.4592;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58190460 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58190768 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0095;AVGPOST=0.9995;RSQ=0.9795;ERATE=0.0003;THETA=0.0013;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58190853 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0035;AVGPOST=0.9982;RSQ=0.8075;ERATE=0.0008;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58190895 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8782;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58190959 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0018;AVGPOST=0.9997;RSQ=0.9181;ERATE=0.0003;THETA=0.0028;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58190966 . CA C 73 PASS INDEL;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6299;ERATE=0.0003;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58190984 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0122;AVGPOST=0.9988;RSQ=0.9679;ERATE=0.0003;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58191038 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0018;AVGPOST=0.9995;RSQ=0.8934;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58191093 . CA C 108 PASS INDEL;BAVGPOST=1.000;BRSQ=0.729;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5545;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58191387 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.988;LDAF=0.3831;AVGPOST=0.9929;RSQ=0.9908;ERATE=0.0004;THETA=0.0003;AC=836;AN=2184 GT:DS:GL:BD 0.38278389 0 1 58191417 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0548;AVGPOST=0.9981;RSQ=0.9880;ERATE=0.0004;THETA=0.0043;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 58191478 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0251;AVGPOST=0.9959;RSQ=0.9354;ERATE=0.0004;THETA=0.0015;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 58191486 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.838;LDAF=0.0043;AVGPOST=0.9971;RSQ=0.7244;ERATE=0.0005;THETA=0.0103;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58191698 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.733;LDAF=0.0067;AVGPOST=0.9966;RSQ=0.7880;ERATE=0.0005;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58191726 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0086;AVGPOST=0.9991;RSQ=0.9618;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58191742 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.979;LDAF=0.0154;AVGPOST=0.9990;RSQ=0.9769;ERATE=0.0004;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58191781 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0066;AVGPOST=0.9992;RSQ=0.9469;ERATE=0.0004;THETA=0.0017;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58191801 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.987;LDAF=0.3521;AVGPOST=0.9911;RSQ=0.9867;ERATE=0.0021;THETA=0.0040;AC=769;AN=2184 GT:DS:GL:BD 0.35210621 0 1 58191839 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0064;AVGPOST=0.9986;RSQ=0.9333;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58191856 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58191898 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.973;LDAF=0.8255;AVGPOST=0.9872;RSQ=0.9665;ERATE=0.0016;THETA=0.0009;AC=1806;AN=2184 GT:DS:GL:BD 0.82692307 1 1 58192048 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0027;AVGPOST=0.9994;RSQ=0.9179;ERATE=0.0003;THETA=0.0054;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58192095 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9395;ERATE=0.0006;THETA=0.0034;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58192123 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.968;LDAF=0.8282;AVGPOST=0.9920;RSQ=0.9784;ERATE=0.0004;THETA=0.0003;AC=1812;AN=2184 GT:DS:GL:BD 0.82967031 1 1 58192270 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8614;ERATE=0.0004;THETA=0.0072;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58192402 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7359;ERATE=0.0003;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58192425 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.0597;AVGPOST=0.9989;RSQ=0.9929;ERATE=0.0003;THETA=0.0003;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 58192476 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7576;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58192492 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5191;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58192568 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9103;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58192622 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0112;AVGPOST=0.9987;RSQ=0.9679;ERATE=0.0004;THETA=0.0047;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 58192660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.910;LDAF=0.0051;AVGPOST=0.9958;RSQ=0.7147;ERATE=0.0013;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58192689 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0020;AVGPOST=0.9991;RSQ=0.8129;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58192889 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.6392;AVGPOST=0.9964;RSQ=0.9934;ERATE=0.0004;THETA=0.0008;AC=1398;AN=2184 GT:DS:GL:BD 0.64010990 1 1 58192959 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58193015 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58193097 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9996;AVGPOST=0.9992;RSQ=0.1771;ERATE=0.0003;THETA=0.0005;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 58193121 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58193166 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0588;AVGPOST=0.9995;RSQ=0.9953;ERATE=0.0003;THETA=0.0002;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 58193349 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58193683 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7705;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58193831 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58193870 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6651;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58193873 . G GT 169 PASS INDEL;BAVGPOST=0.998;BRSQ=0.595;LDAF=0.0046;AVGPOST=0.9949;RSQ=0.5301;ERATE=0.0015;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58193883 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.6871;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58193931 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9599;ERATE=0.0004;THETA=0.0039;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58193963 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.643;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58193978 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0176;AVGPOST=0.9989;RSQ=0.9711;ERATE=0.0004;THETA=0.0008;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 58193987 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0583;AVGPOST=0.9984;RSQ=0.9881;ERATE=0.0004;THETA=0.0005;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 58194061 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0065;AVGPOST=0.9968;RSQ=0.8222;ERATE=0.0004;THETA=0.0034;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58194092 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.740;LDAF=0.0032;AVGPOST=0.9974;RSQ=0.6813;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58194127 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.519;LDAF=0.0037;AVGPOST=0.9973;RSQ=0.7138;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58194183 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0589;AVGPOST=0.9971;RSQ=0.9790;ERATE=0.0005;THETA=0.0003;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 58194221 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.6346;AVGPOST=0.9891;RSQ=0.9812;ERATE=0.0008;THETA=0.0003;AC=1387;AN=2184 GT:DS:GL:BD 0.63507324 1 1 58194228 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.5053;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58194257 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.792;LDAF=0.0426;AVGPOST=0.9832;RSQ=0.8510;ERATE=0.0005;THETA=0.0007;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 58194265 . C CA 70 PASS INDEL;BAVGPOST=0.984;BRSQ=0.502;LDAF=0.0314;AVGPOST=0.9654;RSQ=0.5330;ERATE=0.0050;THETA=0.0003;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 58194272 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.856;LDAF=0.0521;AVGPOST=0.9900;RSQ=0.9288;ERATE=0.0015;THETA=0.0005;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 58194281 rs35688917 C CA 2536 PASS INDEL;BAVGPOST=0.982;BRSQ=0.881;LDAF=0.0858;AVGPOST=0.9576;RSQ=0.7828;ERATE=0.0096;THETA=0.0005;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 58194396 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8863;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58194416 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6954;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58194530 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1992;AVGPOST=0.9983;RSQ=0.9966;ERATE=0.0004;THETA=0.0006;AC=435;AN=2184 GT:DS:GL:BD 0.19917582 0 1 58194625 rs78774357 CT C 10597 PASS INDEL;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0795;AVGPOST=0.9979;RSQ=0.9896;ERATE=0.0004;THETA=0.0011;AC=173;AN=2184 GT:DS:GL:BD 0.07921246 0 1 58194629 . TG T 793 PASS INDEL;BAVGPOST=0.976;BRSQ=0.841;LDAF=0.0604;AVGPOST=0.9777;RSQ=0.8839;ERATE=0.0004;THETA=0.0006;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 58194733 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.4362;AVGPOST=0.9927;RSQ=0.9883;ERATE=0.0005;THETA=0.0003;AC=950;AN=2184 GT:DS:GL:BD 0.43498167 0 1 58194787 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.8031;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58194795 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58194803 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5888;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58194822 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58194870 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6973;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58194929 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.463;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4556;ERATE=0.0004;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58194949 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58194979 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9293;ERATE=0.0004;THETA=0.0037;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58195063 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0056;AVGPOST=0.9983;RSQ=0.8869;ERATE=0.0003;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58195388 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8686;ERATE=0.0004;THETA=0.0043;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58195530 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58195531 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.1978;AVGPOST=0.9938;RSQ=0.9880;ERATE=0.0004;THETA=0.0037;AC=434;AN=2184 GT:DS:GL:BD 0.19871795 0 1 58195572 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.965;LDAF=0.1190;AVGPOST=0.9912;RSQ=0.9708;ERATE=0.0004;THETA=0.0085;AC=264;AN=2184 GT:DS:GL:BD 0.12087912 0 1 58195629 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8319;ERATE=0.0008;THETA=0.0025;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58195723 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=0.9998;RSQ=0.9618;ERATE=0.0003;THETA=0.0056;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58195788 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8648;ERATE=0.0003;THETA=0.0038;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58195800 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58195809 . AG A 88 PASS INDEL;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5081;ERATE=0.0004;THETA=0.0039;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58195959 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0026;AVGPOST=0.9992;RSQ=0.8598;ERATE=0.0003;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58196002 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0006;AVGPOST=0.9989;RSQ=0.3078;ERATE=0.0003;THETA=0.0104;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 58196128 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0050;AVGPOST=0.9991;RSQ=0.9335;ERATE=0.0003;THETA=0.0027;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58196146 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.772;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7666;ERATE=0.0004;THETA=0.0119;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58196180 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0061;AVGPOST=0.9990;RSQ=0.9419;ERATE=0.0004;THETA=0.0024;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58196205 . AG A 1238 PASS INDEL;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0092;AVGPOST=0.9982;RSQ=0.9317;ERATE=0.0005;THETA=0.0044;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58196231 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.6378;ERATE=0.0003;THETA=0.0166;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58196323 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7141;ERATE=0.0003;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58196335 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9481;ERATE=0.0003;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58196427 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.6266;ERATE=0.0004;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58196436 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.750;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9302;ERATE=0.0003;THETA=0.0057;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58196459 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6464;ERATE=0.0003;THETA=0.0051;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58196478 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7632;ERATE=0.0006;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58196658 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5924;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58196835 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58196893 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.773;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.8441;ERATE=0.0003;THETA=0.0037;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58197010 . TG T 549 PASS INDEL;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9460;ERATE=0.0003;THETA=0.0020;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58197055 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0054;AVGPOST=0.9983;RSQ=0.8851;ERATE=0.0004;THETA=0.0114;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58197056 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0049;AVGPOST=0.9991;RSQ=0.9388;ERATE=0.0003;THETA=0.0085;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58197129 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0053;AVGPOST=0.9970;RSQ=0.8121;ERATE=0.0013;THETA=0.0040;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58197156 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0053;AVGPOST=0.9991;RSQ=0.9352;ERATE=0.0004;THETA=0.0032;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58197161 . T TA 80 PASS INDEL;BAVGPOST=0.999;BRSQ=0.697;LDAF=0.0031;AVGPOST=0.9971;RSQ=0.6368;ERATE=0.0006;THETA=0.0107;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58197178 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.711;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6656;ERATE=0.0003;THETA=0.0042;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58197293 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.911;BRSQ=0.847;LDAF=0.4995;AVGPOST=0.8770;RSQ=0.8218;ERATE=0.0091;THETA=0.0052;AC=1114;AN=2184 GT:DS:GL:BD 0.51007324 1 1 58197313 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6162;ERATE=0.0003;THETA=0.0210;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58197426 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0004;THETA=0.0052;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58197484 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.734;LDAF=0.0098;AVGPOST=0.9953;RSQ=0.8139;ERATE=0.0005;THETA=0.0218;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58197484 . A AT 1442 PASS INDEL;BAVGPOST=0.986;BRSQ=0.743;LDAF=0.0218;AVGPOST=0.9856;RSQ=0.7405;ERATE=0.0006;THETA=0.0166;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58197485 . AAT A 5497 PASS INDEL;BAVGPOST=0.881;BRSQ=0.791;LDAF=0.3598;AVGPOST=0.8739;RSQ=0.7944;ERATE=0.0139;THETA=0.0038;AC=790;AN=2184 GT:DS:GL:BD 0.36172161 0 1 58197486 . AT A 18472 PASS INDEL;BAVGPOST=0.926;BRSQ=0.887;LDAF=0.4301;AVGPOST=0.9250;RSQ=0.9000;ERATE=0.0005;THETA=0.0053;AC=941;AN=2184 GT:DS:GL:BD 0.43086082 0 1 58197487 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.928;BRSQ=0.891;LDAF=0.4354;AVGPOST=0.9311;RSQ=0.9078;ERATE=0.0012;THETA=0.0206;AC=949;AN=2184 GT:DS:GL:BD 0.43452382 0 1 58197487 rs11433139 T TA 22639 PASS INDEL;BAVGPOST=0.817;BRSQ=0.686;LDAF=0.5726;AVGPOST=0.7757;RSQ=0.6615;ERATE=0.0275;THETA=0.0506;AC=1251;AN=2184 GT:DS:GL:BD 0.57280219 1 1 58197575 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0196;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58197802 . TG T 6 PASS INDEL;BAVGPOST=0.999;BRSQ=0.774;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7216;ERATE=0.0004;THETA=0.0154;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58197850 . TG T 5914 PASS INDEL;BAVGPOST=0.962;BRSQ=0.767;LDAF=0.0943;AVGPOST=0.9473;RSQ=0.7504;ERATE=0.0172;THETA=0.0088;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 58197855 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.932;LDAF=0.2167;AVGPOST=0.9703;RSQ=0.9373;ERATE=0.0382;THETA=0.0345;AC=462;AN=2184 GT:DS:GL:BD 0.21153846 0 1 58198086 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0395;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58198137 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7125;ERATE=0.0003;THETA=0.0141;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58198196 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0172;AVGPOST=0.9983;RSQ=0.9555;ERATE=0.0006;THETA=0.0153;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 58198257 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0193;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58198311 . TG T 196 PASS INDEL;BAVGPOST=0.999;BRSQ=0.829;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8063;ERATE=0.0004;THETA=0.0167;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58198345 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0142;AVGPOST=0.9986;RSQ=0.9615;ERATE=0.0013;THETA=0.0191;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58198403 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8374;ERATE=0.0003;THETA=0.0143;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58198453 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9524;ERATE=0.0003;THETA=0.0130;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58198566 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0022;AVGPOST=0.9996;RSQ=0.9318;ERATE=0.0003;THETA=0.0160;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58198598 . CATA C 1112 PASS INDEL;BAVGPOST=0.998;BRSQ=0.952;LDAF=0.0054;AVGPOST=0.9989;RSQ=0.9222;ERATE=0.0003;THETA=0.0182;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58198602 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7646;ERATE=0.0004;THETA=0.0060;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58198645 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.0793;AVGPOST=0.9969;RSQ=0.9857;ERATE=0.0004;THETA=0.0011;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 58198665 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0065;AVGPOST=0.9998;RSQ=0.9831;ERATE=0.0003;THETA=0.0117;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58198767 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.988;LDAF=0.2565;AVGPOST=0.9856;RSQ=0.9728;ERATE=0.0008;THETA=0.0006;AC=558;AN=2184 GT:DS:GL:BD 0.25549451 0 1 58198773 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6699;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58198890 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7326;ERATE=0.0004;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58198893 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58199019 . TA T 39 PASS INDEL;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0004;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58199089 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0024;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58199101 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0375;AVGPOST=0.9984;RSQ=0.9845;ERATE=0.0004;THETA=0.0006;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 58199247 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.8035;ERATE=0.0004;THETA=0.0027;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58199383 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0370;AVGPOST=0.9997;RSQ=0.9963;ERATE=0.0003;THETA=0.0007;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 58199406 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.969;LDAF=0.0617;AVGPOST=0.9948;RSQ=0.9729;ERATE=0.0005;THETA=0.0010;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 58199552 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58199777 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0120;AVGPOST=0.9993;RSQ=0.9738;ERATE=0.0004;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58199778 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.886;LDAF=0.0137;AVGPOST=0.9955;RSQ=0.8629;ERATE=0.0004;THETA=0.0008;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 58199788 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9144;ERATE=0.0004;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58199789 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5057;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58199843 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9442;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58199857 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4191;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58199884 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7290;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58200117 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9382;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58200119 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58200132 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6154;ERATE=0.0006;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58200238 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9792;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58200258 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0003;THETA=0.0047;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58200311 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.901;LDAF=0.0100;AVGPOST=0.9970;RSQ=0.8940;ERATE=0.0004;THETA=0.0009;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58200338 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1417;AVGPOST=0.9960;RSQ=0.9881;ERATE=0.0004;THETA=0.0005;AC=305;AN=2184 GT:DS:GL:BD 0.13965201 0 1 58200378 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8453;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58200383 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4156;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58200541 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.960;LDAF=0.0364;AVGPOST=0.9961;RSQ=0.9597;ERATE=0.0004;THETA=0.0004;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 58200583 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1454;AVGPOST=0.9980;RSQ=0.9943;ERATE=0.0003;THETA=0.0006;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 58200645 . T TGG 50 PASS INDEL;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0029;AVGPOST=0.9963;RSQ=0.5091;ERATE=0.0006;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58200777 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0119;AVGPOST=0.9979;RSQ=0.9249;ERATE=0.0005;THETA=0.0007;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58200862 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0389;AVGPOST=0.9989;RSQ=0.9896;ERATE=0.0004;THETA=0.0008;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 58200873 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9397;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58201190 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58201266 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7165;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58201362 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6111;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58201363 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.744;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58201541 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.5863;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58201597 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.819;LDAF=0.0053;AVGPOST=0.9980;RSQ=0.8423;ERATE=0.0004;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58201627 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0027;AVGPOST=0.9973;RSQ=0.6196;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58201661 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0044;AVGPOST=0.9995;RSQ=0.9480;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58201686 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.6034;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58201704 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.766;LDAF=0.0030;AVGPOST=0.9985;RSQ=0.7965;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58201734 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.914;LDAF=0.0133;AVGPOST=0.9993;RSQ=0.9785;ERATE=0.0003;THETA=0.0006;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 58201780 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.982;LDAF=0.3501;AVGPOST=0.9931;RSQ=0.9892;ERATE=0.0004;THETA=0.0007;AC=766;AN=2184 GT:DS:GL:BD 0.35073259 0 1 58201784 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.982;LDAF=0.3502;AVGPOST=0.9934;RSQ=0.9895;ERATE=0.0005;THETA=0.0004;AC=766;AN=2184 GT:DS:GL:BD 0.35073259 0 1 58201813 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.0783;AVGPOST=0.9995;RSQ=0.9974;ERATE=0.0003;THETA=0.0013;AC=171;AN=2184 GT:DS:GL:BD 0.07829671 0 1 58201823 . A AT 47 PASS INDEL;BAVGPOST=0.999;BRSQ=0.824;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7601;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58201852 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0110;AVGPOST=0.9999;RSQ=0.9940;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58201884 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1408;AVGPOST=0.9987;RSQ=0.9956;ERATE=0.0005;THETA=0.0010;AC=305;AN=2184 GT:DS:GL:BD 0.13965201 0 1 58201899 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58202101 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0138;AVGPOST=0.9998;RSQ=0.9946;ERATE=0.0003;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58202115 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7629;ERATE=0.0009;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58202124 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0111;AVGPOST=0.9998;RSQ=0.9900;ERATE=0.0003;THETA=0.0002;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58202297 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5307;AVGPOST=0.9969;RSQ=0.9952;ERATE=0.0003;THETA=0.0002;AC=1157;AN=2184 GT:DS:GL:BD 0.52976191 1 1 58202308 . AT A 1584 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0153;AVGPOST=0.9968;RSQ=0.9384;ERATE=0.0004;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58202314 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0041;AVGPOST=0.9989;RSQ=0.9050;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58202388 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.771;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58202598 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8136;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58202604 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58202767 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4603;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58202795 . C CTG 186 PASS INDEL;BAVGPOST=1.000;BRSQ=0.732;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58202811 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2022;AVGPOST=0.9957;RSQ=0.9905;ERATE=0.0005;THETA=0.0002;AC=441;AN=2184 GT:DS:GL:BD 0.20192307 0 1 58202822 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.951;LDAF=0.0098;AVGPOST=0.9976;RSQ=0.9129;ERATE=0.0005;THETA=0.0009;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58202834 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.901;LDAF=0.0107;AVGPOST=0.9983;RSQ=0.9368;ERATE=0.0003;THETA=0.0013;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58202940 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58202963 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6745;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58202969 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7304;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58203002 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7238;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58203410 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0580;AVGPOST=0.9994;RSQ=0.9958;ERATE=0.0003;THETA=0.0007;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 58203493 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0228;AVGPOST=0.9981;RSQ=0.9687;ERATE=0.0003;THETA=0.0004;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 58203498 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5995;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58203525 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0110;AVGPOST=0.9999;RSQ=0.9960;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58203546 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0110;AVGPOST=1.0000;RSQ=0.9980;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58203604 . G GC 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4334;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58203824 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.678;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.5471;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58203846 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6953;ERATE=0.0003;THETA=0.0040;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58203875 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0790;AVGPOST=0.9992;RSQ=0.9966;ERATE=0.0003;THETA=0.0002;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 58203903 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.0780;AVGPOST=0.9975;RSQ=0.9897;ERATE=0.0004;THETA=0.0006;AC=170;AN=2184 GT:DS:GL:BD 0.07783883 0 1 58203986 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.3918;AVGPOST=0.9973;RSQ=0.9953;ERATE=0.0008;THETA=0.0002;AC=857;AN=2184 GT:DS:GL:BD 0.39239928 0 1 58204079 . CAT C 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.712;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6393;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58204161 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6301;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58204164 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.644;LDAF=0.0024;AVGPOST=0.9973;RSQ=0.5744;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58204171 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0133;AVGPOST=0.9947;RSQ=0.8486;ERATE=0.0007;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 58204237 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3548;AVGPOST=0.9975;RSQ=0.9955;ERATE=0.0007;THETA=0.0003;AC=775;AN=2184 GT:DS:GL:BD 0.35485348 0 1 58204296 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.973;LDAF=0.0372;AVGPOST=0.9994;RSQ=0.9932;ERATE=0.0003;THETA=0.0002;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 58204298 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.975;LDAF=0.0377;AVGPOST=0.9984;RSQ=0.9842;ERATE=0.0003;THETA=0.0004;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 58204340 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1412;AVGPOST=0.9979;RSQ=0.9933;ERATE=0.0005;THETA=0.0004;AC=306;AN=2184 GT:DS:GL:BD 0.14010990 0 1 58204354 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58204475 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7683;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58204476 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5715;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58204511 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58204580 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6550;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58204604 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0137;AVGPOST=0.9997;RSQ=0.9923;ERATE=0.0003;THETA=0.0007;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58204710 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58204733 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58204925 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0168;AVGPOST=0.9992;RSQ=0.9775;ERATE=0.0004;THETA=0.0011;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 58204962 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.736;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58204973 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.979;LDAF=0.0568;AVGPOST=0.9984;RSQ=0.9900;ERATE=0.0004;THETA=0.0003;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 58204976 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0124;AVGPOST=0.9984;RSQ=0.9499;ERATE=0.0004;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58204992 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.701;LDAF=0.0007;AVGPOST=0.9991;RSQ=0.4461;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58205044 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.922;LDAF=0.0494;AVGPOST=0.9963;RSQ=0.9747;ERATE=0.0003;THETA=0.0005;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 58205131 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.785;BRSQ=0.198;LDAF=0.2501;AVGPOST=0.7293;RSQ=0.3975;ERATE=0.0201;THETA=0.0002;AC=374;AN=2184 GT:DS:GL:BD 0.17124543 0 1 58205132 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.225;LDAF=0.0892;AVGPOST=0.8712;RSQ=0.3963;ERATE=0.0054;THETA=0.0004;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 58205136 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.767;BRSQ=0.256;LDAF=0.2559;AVGPOST=0.7105;RSQ=0.3861;ERATE=0.0232;THETA=0.0004;AC=379;AN=2184 GT:DS:GL:BD 0.17353480 0 1 58205159 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.628;LDAF=0.0209;AVGPOST=0.9714;RSQ=0.4448;ERATE=0.0024;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58205357 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.936;LDAF=0.3293;AVGPOST=0.9556;RSQ=0.9282;ERATE=0.0063;THETA=0.0004;AC=723;AN=2184 GT:DS:GL:BD 0.33104396 0 1 58205364 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.728;LDAF=0.0062;AVGPOST=0.9970;RSQ=0.8084;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58205426 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9544;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58205599 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0156;AVGPOST=0.9984;RSQ=0.9615;ERATE=0.0003;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58205734 . A AAAT 187 PASS INDEL;BAVGPOST=0.877;BRSQ=0.352;LDAF=0.1550;AVGPOST=0.8221;RSQ=0.4497;ERATE=0.0229;THETA=0.0004;AC=230;AN=2184 GT:DS:GL:BD 0.10531136 0 1 58205835 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6574;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58205924 . TA T 98 PASS INDEL;BAVGPOST=0.999;BRSQ=0.573;LDAF=0.0013;AVGPOST=0.9979;RSQ=0.4206;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58205949 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0026;AVGPOST=0.9988;RSQ=0.7932;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58206010 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8840;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58206206 . G GTGGAA 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4831;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58206333 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58206360 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.1866;AVGPOST=0.9996;RSQ=0.9990;ERATE=0.0003;THETA=0.0006;AC=408;AN=2184 GT:DS:GL:BD 0.18681319 0 1 58206406 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7514;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58206438 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1871;AVGPOST=0.9982;RSQ=0.9959;ERATE=0.0005;THETA=0.0004;AC=408;AN=2184 GT:DS:GL:BD 0.18681319 0 1 58206516 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8090;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58206524 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7640;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58206572 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0078;AVGPOST=0.9997;RSQ=0.9815;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58206575 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7847;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58206618 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8394;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58206698 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0568;AVGPOST=0.9987;RSQ=0.9909;ERATE=0.0003;THETA=0.0004;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 58206784 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58206850 . TAA T 673 PASS INDEL;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0028;AVGPOST=0.9979;RSQ=0.6848;ERATE=0.0016;THETA=0.0024;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58206888 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.772;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7477;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58206894 . ATCT A 22 PASS INDEL;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0023;AVGPOST=0.9967;RSQ=0.4375;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58206952 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.504;LDAF=0.0155;AVGPOST=0.9788;RSQ=0.4761;ERATE=0.0056;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58206961 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9721;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58207049 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0788;AVGPOST=0.9993;RSQ=0.9965;ERATE=0.0003;THETA=0.0004;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 58207066 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0024;AVGPOST=0.9986;RSQ=0.7593;ERATE=0.0013;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58207177 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.916;LDAF=0.0323;AVGPOST=0.9953;RSQ=0.9435;ERATE=0.0003;THETA=0.0006;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 58207223 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58207228 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.5211;AVGPOST=0.9975;RSQ=0.9956;ERATE=0.0004;THETA=0.0006;AC=1136;AN=2184 GT:DS:GL:BD 0.52014655 1 1 58207237 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6814;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58207399 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.914;LDAF=0.0182;AVGPOST=0.9976;RSQ=0.9404;ERATE=0.0004;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 58207453 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8474;ERATE=0.0003;THETA=0.0030;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58207636 . TG T 115 PASS INDEL;BAVGPOST=0.998;BRSQ=0.486;LDAF=0.0023;AVGPOST=0.9966;RSQ=0.4073;ERATE=0.0008;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58207719 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3408;AVGPOST=0.9992;RSQ=0.9984;ERATE=0.0004;THETA=0.0003;AC=745;AN=2184 GT:DS:GL:BD 0.34111720 0 1 58207743 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58207801 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.964;LDAF=0.0372;AVGPOST=0.9963;RSQ=0.9649;ERATE=0.0003;THETA=0.0004;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 58207825 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.891;LDAF=0.0069;AVGPOST=0.9967;RSQ=0.8255;ERATE=0.0007;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58207856 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.987;LDAF=0.1847;AVGPOST=0.9991;RSQ=0.9977;ERATE=0.0003;THETA=0.0006;AC=404;AN=2184 GT:DS:GL:BD 0.18498169 0 1 58207861 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.2846;AVGPOST=0.9989;RSQ=0.9978;ERATE=0.0005;THETA=0.0006;AC=622;AN=2184 GT:DS:GL:BD 0.28479853 0 1 58207881 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0567;AVGPOST=0.9995;RSQ=0.9956;ERATE=0.0003;THETA=0.0004;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 58207950 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0037;AVGPOST=0.9992;RSQ=0.9123;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58207992 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1839;AVGPOST=0.9995;RSQ=0.9986;ERATE=0.0004;THETA=0.0005;AC=402;AN=2184 GT:DS:GL:BD 0.18406594 0 1 58208085 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3379;AVGPOST=0.9980;RSQ=0.9966;ERATE=0.0005;THETA=0.0003;AC=738;AN=2184 GT:DS:GL:BD 0.33791208 0 1 58208267 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1842;AVGPOST=0.9987;RSQ=0.9971;ERATE=0.0003;THETA=0.0006;AC=404;AN=2184 GT:DS:GL:BD 0.18498169 0 1 58208277 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0376;AVGPOST=0.9991;RSQ=0.9896;ERATE=0.0003;THETA=0.0006;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 58208467 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58208559 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8351;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58208855 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0054;AVGPOST=0.9986;RSQ=0.8826;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58208906 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.926;LDAF=0.1729;AVGPOST=0.9826;RSQ=0.9610;ERATE=0.0005;THETA=0.0002;AC=383;AN=2184 GT:DS:GL:BD 0.17536630 0 1 58208934 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.930;BRSQ=0.858;LDAF=0.3174;AVGPOST=0.9707;RSQ=0.9527;ERATE=0.0014;THETA=0.0004;AC=706;AN=2184 GT:DS:GL:BD 0.32326007 0 1 58209143 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.979;LDAF=0.0594;AVGPOST=0.9959;RSQ=0.9709;ERATE=0.0004;THETA=0.0007;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 58209154 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58209157 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.970;LDAF=0.0795;AVGPOST=0.9964;RSQ=0.9844;ERATE=0.0007;THETA=0.0002;AC=175;AN=2184 GT:DS:GL:BD 0.08012821 0 1 58209220 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0992;AVGPOST=0.9995;RSQ=0.9978;ERATE=0.0004;THETA=0.0006;AC=217;AN=2184 GT:DS:GL:BD 0.09935898 0 1 58209577 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0020;AVGPOST=0.9982;RSQ=0.6599;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58209639 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.680;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7313;ERATE=0.0007;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58209681 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.681;LDAF=0.0056;AVGPOST=0.9964;RSQ=0.7541;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58209710 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.810;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9676;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58209750 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.938;LDAF=0.0077;AVGPOST=0.9974;RSQ=0.8648;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58209794 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.977;LDAF=0.0145;AVGPOST=0.9991;RSQ=0.9751;ERATE=0.0004;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 58209874 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7406;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58209883 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3398;AVGPOST=0.9989;RSQ=0.9978;ERATE=0.0004;THETA=0.0003;AC=744;AN=2184 GT:DS:GL:BD 0.34065935 0 1 58209900 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.5725;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58210120 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0047;AVGPOST=0.9984;RSQ=0.8529;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58210169 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.974;LDAF=0.0502;AVGPOST=0.9967;RSQ=0.9715;ERATE=0.0004;THETA=0.0002;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 58210190 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8857;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58210317 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7278;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58210418 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5946;ERATE=0.0007;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58210422 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5640;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58210433 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.0998;AVGPOST=0.9989;RSQ=0.9961;ERATE=0.0003;THETA=0.0005;AC=219;AN=2184 GT:DS:GL:BD 0.10027473 0 1 58210490 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.812;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7203;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58210511 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0019;AVGPOST=0.9982;RSQ=0.5765;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58210519 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0165;AVGPOST=0.9986;RSQ=0.9668;ERATE=0.0003;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 58210621 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0025;AVGPOST=0.9979;RSQ=0.6948;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58210687 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.838;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9149;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58210787 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3408;AVGPOST=0.9986;RSQ=0.9973;ERATE=0.0004;THETA=0.0003;AC=745;AN=2184 GT:DS:GL:BD 0.34111720 0 1 58210810 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5213;AVGPOST=0.9980;RSQ=0.9965;ERATE=0.0003;THETA=0.0005;AC=1137;AN=2184 GT:DS:GL:BD 0.52060437 1 1 58210868 . A AG 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.717;LDAF=0.0019;AVGPOST=0.9978;RSQ=0.4853;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58211018 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1174;AVGPOST=0.9984;RSQ=0.9934;ERATE=0.0005;THETA=0.0005;AC=256;AN=2184 GT:DS:GL:BD 0.11721612 0 1 58211046 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5149;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58211134 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3134;AVGPOST=0.9988;RSQ=0.9976;ERATE=0.0004;THETA=0.0003;AC=681;AN=2184 GT:DS:GL:BD 0.31181318 0 1 58211136 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3700;AVGPOST=0.9990;RSQ=0.9982;ERATE=0.0004;THETA=0.0003;AC=805;AN=2184 GT:DS:GL:BD 0.36858973 0 1 58211291 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0569;AVGPOST=0.9988;RSQ=0.9903;ERATE=0.0004;THETA=0.0004;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 58211303 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0569;AVGPOST=0.9994;RSQ=0.9949;ERATE=0.0003;THETA=0.0002;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 58211330 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.663;LDAF=0.0009;AVGPOST=0.9986;RSQ=0.3206;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58211343 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.871;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5854;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58211419 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.628;LDAF=0.0020;AVGPOST=0.9968;RSQ=0.3812;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58211460 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58211506 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.624;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4912;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58211538 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3178;AVGPOST=0.9994;RSQ=0.9988;ERATE=0.0003;THETA=0.0002;AC=691;AN=2184 GT:DS:GL:BD 0.31639194 0 1 58211575 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.728;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6373;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58211582 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.6181;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58211663 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3170;AVGPOST=0.9988;RSQ=0.9977;ERATE=0.0004;THETA=0.0004;AC=689;AN=2184 GT:DS:GL:BD 0.31547618 0 1 58211698 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1217;AVGPOST=0.9976;RSQ=0.9906;ERATE=0.0004;THETA=0.0001;AC=265;AN=2184 GT:DS:GL:BD 0.12133700 0 1 58211723 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0022;AVGPOST=0.9985;RSQ=0.7353;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58211729 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3180;AVGPOST=0.9986;RSQ=0.9973;ERATE=0.0006;THETA=0.0002;AC=691;AN=2184 GT:DS:GL:BD 0.31639194 0 1 58211736 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.953;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4858;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58211742 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.3216;AVGPOST=0.9963;RSQ=0.9936;ERATE=0.0012;THETA=0.0003;AC=700;AN=2184 GT:DS:GL:BD 0.32051283 0 1 58211866 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3176;AVGPOST=0.9987;RSQ=0.9974;ERATE=0.0006;THETA=0.0004;AC=691;AN=2184 GT:DS:GL:BD 0.31639194 0 1 58211873 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9995;AVGPOST=0.9990;RSQ=0.1682;ERATE=0.0004;THETA=0.0006;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 58211921 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7344;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58211941 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.994;LDAF=0.5856;AVGPOST=0.9961;RSQ=0.9935;ERATE=0.0006;THETA=0.0002;AC=1279;AN=2184 GT:DS:GL:BD 0.58562273 1 1 58211968 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58211997 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.7118;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58212131 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3172;AVGPOST=0.9977;RSQ=0.9957;ERATE=0.0006;THETA=0.0002;AC=691;AN=2184 GT:DS:GL:BD 0.31639194 0 1 58212180 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0022;AVGPOST=0.9979;RSQ=0.6210;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58212303 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0032;AVGPOST=0.9988;RSQ=0.8690;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58212365 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.851;LDAF=0.0101;AVGPOST=0.9976;RSQ=0.9106;ERATE=0.0004;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58212422 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8639;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58212558 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.980;LDAF=0.0582;AVGPOST=0.9952;RSQ=0.9702;ERATE=0.0007;THETA=0.0002;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 58212580 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0126;AVGPOST=0.9993;RSQ=0.9804;ERATE=0.0003;THETA=0.0002;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58212665 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8606;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58212792 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0021;AVGPOST=0.9976;RSQ=0.6129;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58212799 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0119;AVGPOST=0.9984;RSQ=0.9571;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58212840 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.6280;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58212887 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0030;AVGPOST=0.9991;RSQ=0.8688;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58212983 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7075;ERATE=0.0007;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58213033 . GT G 85 PASS INDEL;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5326;ERATE=0.0004;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58213048 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58213252 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.643;LDAF=0.0065;AVGPOST=0.9948;RSQ=0.6746;ERATE=0.0006;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58213297 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.515;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58213337 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0053;AVGPOST=0.9985;RSQ=0.8974;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58213338 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7109;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58213403 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.745;LDAF=0.0023;AVGPOST=0.9962;RSQ=0.3440;ERATE=0.0007;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58213511 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.977;LDAF=0.1827;AVGPOST=0.9910;RSQ=0.9775;ERATE=0.0011;THETA=0.0014;AC=399;AN=2184 GT:DS:GL:BD 0.18269230 0 1 58213717 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0020;AVGPOST=0.9994;RSQ=0.8688;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58213720 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58213788 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9804;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58213861 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7938;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58213864 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8525;ERATE=0.0017;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58214067 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3105;AVGPOST=0.9977;RSQ=0.9957;ERATE=0.0006;THETA=0.0007;AC=675;AN=2184 GT:DS:GL:BD 0.30906594 0 1 58214086 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0117;AVGPOST=0.9985;RSQ=0.9518;ERATE=0.0005;THETA=0.0002;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 58214121 rs112755782 TTAAA T 1618 PASS INDEL;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0079;AVGPOST=0.9987;RSQ=0.9380;ERATE=0.0004;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58214209 rs72498995 C CA 13110 PASS INDEL;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3124;AVGPOST=0.9964;RSQ=0.9942;ERATE=0.0005;THETA=0.0002;AC=677;AN=2184 GT:DS:GL:BD 0.30998167 0 1 58214210 rs35616476 A AT 44995 PASS INDEL;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3117;AVGPOST=0.9980;RSQ=0.9961;ERATE=0.0007;THETA=0.0006;AC=677;AN=2184 GT:DS:GL:BD 0.30998167 0 1 58214312 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0165;AVGPOST=0.9998;RSQ=0.9945;ERATE=0.0003;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 58214372 . A AG 16 PASS INDEL;BAVGPOST=0.999;BRSQ=0.584;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4897;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58214452 . A ATTT 24571 PASS INDEL;BAVGPOST=0.969;BRSQ=0.941;LDAF=0.5469;AVGPOST=0.9503;RSQ=0.9226;ERATE=0.0111;THETA=0.0004;AC=1206;AN=2184 GT:DS:GL:BD 0.55219781 1 1 58214481 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0554;AVGPOST=0.9998;RSQ=0.9981;ERATE=0.0003;THETA=0.0002;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 58214545 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9302;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58214567 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7121;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58214569 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0118;AVGPOST=0.9998;RSQ=0.9927;ERATE=0.0003;THETA=0.0002;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58214647 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0084;AVGPOST=0.9995;RSQ=0.9746;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58214656 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.3100;AVGPOST=0.9985;RSQ=0.9976;ERATE=0.0004;THETA=0.0005;AC=675;AN=2184 GT:DS:GL:BD 0.30906594 0 1 58214763 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0554;AVGPOST=0.9998;RSQ=0.9980;ERATE=0.0003;THETA=0.0004;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 58214784 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9858;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58214912 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.913;LDAF=0.0097;AVGPOST=0.9968;RSQ=0.8702;ERATE=0.0005;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58215034 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.985;LDAF=0.2003;AVGPOST=0.9964;RSQ=0.9923;ERATE=0.0005;THETA=0.0005;AC=436;AN=2184 GT:DS:GL:BD 0.19963370 0 1 58215113 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9282;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58215209 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9844;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58215377 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.965;LDAF=0.0136;AVGPOST=0.9989;RSQ=0.9683;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 58215415 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5726;AVGPOST=0.9979;RSQ=0.9962;ERATE=0.0005;THETA=0.0009;AC=1249;AN=2184 GT:DS:GL:BD 0.57188642 1 1 58215482 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58215492 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0069;AVGPOST=0.9982;RSQ=0.9031;ERATE=0.0008;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58215537 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7658;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58215611 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.918;LDAF=0.0467;AVGPOST=0.9897;RSQ=0.9072;ERATE=0.0004;THETA=0.0005;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 58215615 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.9128;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58215666 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58215724 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0006;AVGPOST=0.9991;RSQ=0.3992;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58215818 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6392;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58215828 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1431;AVGPOST=0.9970;RSQ=0.9915;ERATE=0.0004;THETA=0.0016;AC=308;AN=2184 GT:DS:GL:BD 0.14102565 0 1 58215858 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.5652;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58215902 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8148;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58216216 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0151;AVGPOST=0.9985;RSQ=0.9579;ERATE=0.0004;THETA=0.0008;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58216499 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.8381;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58216567 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0147;AVGPOST=0.9999;RSQ=0.9954;ERATE=0.0003;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58216634 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5979;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58216750 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0374;AVGPOST=0.9995;RSQ=0.9942;ERATE=0.0003;THETA=0.0050;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 58216771 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.628;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.5127;ERATE=0.0003;THETA=0.0049;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58216802 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.716;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58216878 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58217007 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0048;AVGPOST=0.9990;RSQ=0.9114;ERATE=0.0003;THETA=0.0027;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58217010 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0003;THETA=0.0072;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58217055 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0827;AVGPOST=0.9983;RSQ=0.9904;ERATE=0.0003;THETA=0.0005;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 58217067 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58217106 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58217135 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.722;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5212;ERATE=0.0004;THETA=0.0084;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58217331 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58217337 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7390;ERATE=0.0005;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58217386 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7748;ERATE=0.0003;THETA=0.0051;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58217400 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0067;AVGPOST=0.9993;RSQ=0.9541;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58217444 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.974;LDAF=0.0595;AVGPOST=0.9965;RSQ=0.9745;ERATE=0.0009;THETA=0.0011;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 58217448 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.983;LDAF=0.1391;AVGPOST=0.9977;RSQ=0.9929;ERATE=0.0004;THETA=0.0109;AC=301;AN=2184 GT:DS:GL:BD 0.13782051 0 1 58217513 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1435;AVGPOST=0.9935;RSQ=0.9827;ERATE=0.0008;THETA=0.0006;AC=309;AN=2184 GT:DS:GL:BD 0.14148352 0 1 58217570 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.735;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8118;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58217618 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5285;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58217776 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0471;AVGPOST=0.9979;RSQ=0.9820;ERATE=0.0004;THETA=0.0050;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 58217784 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.4704;AVGPOST=0.9940;RSQ=0.9906;ERATE=0.0015;THETA=0.0005;AC=1026;AN=2184 GT:DS:GL:BD 0.46978021 0 1 58217811 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9539;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58217875 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6047;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58217916 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5636;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58218261 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0216;AVGPOST=0.9993;RSQ=0.9858;ERATE=0.0003;THETA=0.0002;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 58218263 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9553;ERATE=0.0008;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58218419 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58218458 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58218498 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6913;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58218563 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4782;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58218661 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9385;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58218690 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58218699 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0188;AVGPOST=0.9997;RSQ=0.9937;ERATE=0.0003;THETA=0.0003;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 58218808 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9451;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58218932 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58218936 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9607;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58219043 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4979;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58219130 . T TC 249 PASS INDEL;BAVGPOST=0.999;BRSQ=0.771;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7474;ERATE=0.0005;THETA=0.0040;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58219167 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4814;AVGPOST=0.9977;RSQ=0.9965;ERATE=0.0004;THETA=0.0004;AC=1051;AN=2184 GT:DS:GL:BD 0.48122710 0 1 58219258 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.4809;AVGPOST=0.9989;RSQ=0.9982;ERATE=0.0005;THETA=0.0003;AC=1051;AN=2184 GT:DS:GL:BD 0.48122710 0 1 58219292 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9443;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58219538 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9858;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58219635 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6940;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58219639 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0048;AVGPOST=0.9989;RSQ=0.9017;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58219652 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1379;AVGPOST=0.9977;RSQ=0.9934;ERATE=0.0004;THETA=0.0004;AC=299;AN=2184 GT:DS:GL:BD 0.13690476 0 1 58219674 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0679;AVGPOST=0.9981;RSQ=0.9880;ERATE=0.0004;THETA=0.0003;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 58219823 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.7130;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58219883 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0033;AVGPOST=0.9995;RSQ=0.9432;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58220103 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0164;AVGPOST=0.9975;RSQ=0.9361;ERATE=0.0005;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 58220128 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.653;LDAF=0.0055;AVGPOST=0.9959;RSQ=0.7174;ERATE=0.0009;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58220134 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.748;LDAF=0.0019;AVGPOST=0.9982;RSQ=0.6144;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58220213 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.973;LDAF=0.6125;AVGPOST=0.9791;RSQ=0.9669;ERATE=0.0030;THETA=0.0005;AC=1346;AN=2184 GT:DS:GL:BD 0.61630034 1 1 58220230 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.792;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6311;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58220259 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0041;AVGPOST=0.9950;RSQ=0.5358;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58220334 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.6229;AVGPOST=0.9963;RSQ=0.9937;ERATE=0.0005;THETA=0.0002;AC=1362;AN=2184 GT:DS:GL:BD 0.62362635 1 1 58220365 . TAAAC T 141 PASS INDEL;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0024;AVGPOST=0.9981;RSQ=0.6821;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58220429 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.850;LDAF=0.0031;AVGPOST=0.9990;RSQ=0.8720;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58220471 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0453;AVGPOST=0.9998;RSQ=0.9980;ERATE=0.0003;THETA=0.0005;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 58220476 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.742;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6343;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58220525 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.706;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8241;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58220546 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0457;AVGPOST=0.9985;RSQ=0.9857;ERATE=0.0005;THETA=0.0004;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 58220680 rs71246210 C CA 16611 PASS INDEL;BAVGPOST=0.994;BRSQ=0.978;LDAF=0.1372;AVGPOST=0.9959;RSQ=0.9887;ERATE=0.0005;THETA=0.0004;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 58220711 . AAC A 124 PASS INDEL;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6010;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58220789 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0454;AVGPOST=0.9995;RSQ=0.9954;ERATE=0.0003;THETA=0.0002;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 58220799 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0030;AVGPOST=0.9990;RSQ=0.8536;ERATE=0.0008;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58220825 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4938;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58220843 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7494;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58220867 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.745;LDAF=0.0041;AVGPOST=0.9973;RSQ=0.7326;ERATE=0.0004;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58220894 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1405;AVGPOST=0.9948;RSQ=0.9846;ERATE=0.0006;THETA=0.0004;AC=301;AN=2184 GT:DS:GL:BD 0.13782051 0 1 58220959 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.802;LDAF=0.0077;AVGPOST=0.9983;RSQ=0.9012;ERATE=0.0006;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58220969 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1379;AVGPOST=0.9991;RSQ=0.9973;ERATE=0.0003;THETA=0.0004;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 58220984 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7877;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58221056 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9213;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58221074 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1385;AVGPOST=0.9989;RSQ=0.9962;ERATE=0.0004;THETA=0.0002;AC=300;AN=2184 GT:DS:GL:BD 0.13736264 0 1 58221075 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8236;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58221433 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=0.9991;RSQ=0.3160;ERATE=0.0004;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 58221435 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0169;AVGPOST=0.9999;RSQ=0.9973;ERATE=0.0003;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 58221490 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5630;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58221501 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0125;AVGPOST=0.9998;RSQ=0.9924;ERATE=0.0003;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58221567 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6553;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58221673 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0138;AVGPOST=0.9992;RSQ=0.9756;ERATE=0.0003;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58221694 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9865;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58221706 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.1993;AVGPOST=0.9945;RSQ=0.9887;ERATE=0.0004;THETA=0.0004;AC=437;AN=2184 GT:DS:GL:BD 0.20009157 0 1 58221709 rs60327143 CA C 13220 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1297;AVGPOST=0.9938;RSQ=0.9796;ERATE=0.0004;THETA=0.0003;AC=285;AN=2184 GT:DS:GL:BD 0.13049451 0 1 58221711 . AC A 778 PASS INDEL;BAVGPOST=0.991;BRSQ=0.960;LDAF=0.1281;AVGPOST=0.9936;RSQ=0.9794;ERATE=0.0003;THETA=0.0004;AC=279;AN=2184 GT:DS:GL:BD 0.12774725 0 1 58221720 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58221785 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1379;AVGPOST=0.9986;RSQ=0.9963;ERATE=0.0004;THETA=0.0006;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 58221945 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5764;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58221976 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8888;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58221978 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6409;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58221987 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0037;AVGPOST=0.9984;RSQ=0.8401;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58221988 rs111547224 AG A 1873 PASS INDEL;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0124;AVGPOST=0.9998;RSQ=0.9918;ERATE=0.0003;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58221989 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.729;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4939;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58221992 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.673;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5866;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58222145 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7230;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58222222 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0419;AVGPOST=0.9994;RSQ=0.9949;ERATE=0.0003;THETA=0.0004;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 58222290 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9266;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58222291 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6381;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58222333 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.800;LDAF=0.0025;AVGPOST=0.9979;RSQ=0.6501;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58222359 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0056;AVGPOST=0.9997;RSQ=0.9766;ERATE=0.0004;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58222400 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0173;AVGPOST=0.9993;RSQ=0.9854;ERATE=0.0004;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 58222504 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5364;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58222516 rs57492918 AC A 13523 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1375;AVGPOST=0.9986;RSQ=0.9956;ERATE=0.0004;THETA=0.0003;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 58222519 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0463;AVGPOST=0.9988;RSQ=0.9888;ERATE=0.0004;THETA=0.0005;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 58222735 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5980;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58222892 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.909;BRSQ=0.817;LDAF=0.4974;AVGPOST=0.8616;RSQ=0.7660;ERATE=0.0502;THETA=0.0002;AC=1101;AN=2184 GT:DS:GL:BD 0.50412089 1 1 58222892 . T TG 18260 PASS INDEL;BAVGPOST=0.964;BRSQ=0.934;LDAF=0.5974;AVGPOST=0.9443;RSQ=0.9119;ERATE=0.0068;THETA=0.0002;AC=1315;AN=2184 GT:DS:GL:BD 0.60210621 1 1 58222900 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0696;AVGPOST=0.9978;RSQ=0.9870;ERATE=0.0004;THETA=0.0004;AC=151;AN=2184 GT:DS:GL:BD 0.06913920 0 1 58222968 . AT A 390 PASS INDEL;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0037;AVGPOST=0.9985;RSQ=0.8294;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58223128 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5149;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58223279 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0022;AVGPOST=0.9985;RSQ=0.7269;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58223372 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0019;AVGPOST=0.9994;RSQ=0.8507;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58223379 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6068;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0003;THETA=0.0003;AC=1323;AN=2184 GT:DS:GL:BD 0.60576922 1 1 58223402 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6783;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58223430 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1375;AVGPOST=0.9996;RSQ=0.9986;ERATE=0.0003;THETA=0.0007;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 58223432 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9996;RSQ=0.9413;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58223514 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9993;RSQ=0.9346;ERATE=0.0003;THETA=0.0001;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58223521 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6889;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58223628 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6136;AVGPOST=0.9971;RSQ=0.9948;ERATE=0.0007;THETA=0.0003;AC=1339;AN=2184 GT:DS:GL:BD 0.61309522 1 1 58223644 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0101;AVGPOST=0.9991;RSQ=0.9668;ERATE=0.0004;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58223653 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1302;AVGPOST=0.9989;RSQ=0.9957;ERATE=0.0004;THETA=0.0004;AC=285;AN=2184 GT:DS:GL:BD 0.13049451 0 1 58223891 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0086;AVGPOST=0.9993;RSQ=0.9602;ERATE=0.0004;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58224048 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58224094 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58224163 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.773;LDAF=0.0018;AVGPOST=0.9995;RSQ=0.8842;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58224212 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0849;AVGPOST=0.9993;RSQ=0.9971;ERATE=0.0003;THETA=0.0003;AC=186;AN=2184 GT:DS:GL:BD 0.08516484 0 1 58224259 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9612;ERATE=0.0007;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58224300 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7883;ERATE=0.0006;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58224332 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0417;AVGPOST=0.9997;RSQ=0.9964;ERATE=0.0003;THETA=0.0002;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 58224350 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.732;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6967;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58224352 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4988;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58224371 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.787;LDAF=0.0043;AVGPOST=0.9964;RSQ=0.6803;ERATE=0.0007;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58224426 . T TC 39 PASS INDEL;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6176;ERATE=0.0005;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58224457 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0114;AVGPOST=0.9988;RSQ=0.9515;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58224606 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1726;AVGPOST=0.9981;RSQ=0.9947;ERATE=0.0005;THETA=0.0002;AC=376;AN=2184 GT:DS:GL:BD 0.17216118 0 1 58224621 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0033;AVGPOST=0.9980;RSQ=0.7849;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58224717 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9443;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58224723 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.8389;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58224813 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58224865 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.8910;ERATE=0.0006;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58224887 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1376;AVGPOST=0.9994;RSQ=0.9980;ERATE=0.0004;THETA=0.0024;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 58225264 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7402;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58225332 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0049;AVGPOST=0.9996;RSQ=0.9641;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58225341 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0034;AVGPOST=0.9991;RSQ=0.9262;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58225354 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.648;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5845;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58225373 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.2663;AVGPOST=0.9990;RSQ=0.9982;ERATE=0.0004;THETA=0.0004;AC=583;AN=2184 GT:DS:GL:BD 0.26694140 0 1 58225396 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0155;AVGPOST=0.9995;RSQ=0.9858;ERATE=0.0003;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58225404 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0061;AVGPOST=0.9998;RSQ=0.9819;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58225442 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0082;AVGPOST=0.9999;RSQ=0.9922;ERATE=0.0003;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58225450 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5798;AVGPOST=0.9973;RSQ=0.9962;ERATE=0.0004;THETA=0.0002;AC=1266;AN=2184 GT:DS:GL:BD 0.57967031 1 1 58225460 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0017;AVGPOST=0.9996;RSQ=0.9210;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58225485 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6200;AVGPOST=0.9990;RSQ=0.9981;ERATE=0.0004;THETA=0.0002;AC=1352;AN=2184 GT:DS:GL:BD 0.61904764 1 1 58225542 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0471;AVGPOST=0.9997;RSQ=0.9967;ERATE=0.0003;THETA=0.0019;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 58225668 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3922;AVGPOST=0.9991;RSQ=0.9984;ERATE=0.0004;THETA=0.0002;AC=858;AN=2184 GT:DS:GL:BD 0.39285713 0 1 58225705 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7509;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58225731 rs34797182 AAG A 10380 PASS INDEL;BAVGPOST=0.972;BRSQ=0.897;LDAF=0.1371;AVGPOST=0.9956;RSQ=0.9861;ERATE=0.0004;THETA=0.0002;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 58225751 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5706;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58225761 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.5761;AVGPOST=0.9976;RSQ=0.9966;ERATE=0.0004;THETA=0.0004;AC=1258;AN=2184 GT:DS:GL:BD 0.57600731 1 1 58225829 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8148;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58225872 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5253;AVGPOST=0.9993;RSQ=0.9988;ERATE=0.0003;THETA=0.0004;AC=1147;AN=2184 GT:DS:GL:BD 0.52518314 1 1 58225919 . CCA C 18 PASS INDEL;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.5749;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58225930 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0217;AVGPOST=0.9988;RSQ=0.9769;ERATE=0.0003;THETA=0.0002;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 58226023 . ACTT A 668 PASS INDEL;BAVGPOST=0.998;BRSQ=0.912;LDAF=0.0059;AVGPOST=0.9982;RSQ=0.8888;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58226047 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9755;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58226059 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0040;AVGPOST=0.9992;RSQ=0.9112;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58226061 . CA C 417 PASS INDEL;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0070;AVGPOST=0.9963;RSQ=0.8068;ERATE=0.0004;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58226116 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0020;AVGPOST=0.9991;RSQ=0.8201;ERATE=0.0003;THETA=0.0001;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58226143 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.5504;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58226293 rs72365119 C CTTTT 2266 PASS INDEL;BAVGPOST=0.964;BRSQ=0.500;LDAF=0.0447;AVGPOST=0.9471;RSQ=0.5088;ERATE=0.0072;THETA=0.0003;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 58226315 . GAC G 26563 PASS INDEL;BAVGPOST=0.999;BRSQ=0.432;LDAF=0.9947;AVGPOST=0.9920;RSQ=0.3816;ERATE=0.0009;THETA=0.0002;AC=2180;AN=2184 GT:DS:GL:BD 0.99816847 1 1 58226522 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5751;AVGPOST=0.9978;RSQ=0.9965;ERATE=0.0005;THETA=0.0002;AC=1256;AN=2184 GT:DS:GL:BD 0.57509160 1 1 58226535 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7671;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58226536 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.6164;AVGPOST=0.9981;RSQ=0.9969;ERATE=0.0004;THETA=0.0002;AC=1344;AN=2184 GT:DS:GL:BD 0.61538464 1 1 58226592 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2832;AVGPOST=0.9992;RSQ=0.9988;ERATE=0.0003;THETA=0.0004;AC=620;AN=2184 GT:DS:GL:BD 0.28388280 0 1 58226667 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2833;AVGPOST=0.9988;RSQ=0.9979;ERATE=0.0004;THETA=0.0005;AC=620;AN=2184 GT:DS:GL:BD 0.28388280 0 1 58226786 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3925;AVGPOST=0.9985;RSQ=0.9976;ERATE=0.0004;THETA=0.0004;AC=858;AN=2184 GT:DS:GL:BD 0.39285713 0 1 58226856 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0420;AVGPOST=0.9989;RSQ=0.9892;ERATE=0.0003;THETA=0.0002;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 58226900 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1374;AVGPOST=0.9994;RSQ=0.9980;ERATE=0.0003;THETA=0.0002;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 58226987 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8795;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58227052 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5742;AVGPOST=0.9985;RSQ=0.9973;ERATE=0.0007;THETA=0.0002;AC=1254;AN=2184 GT:DS:GL:BD 0.57417583 1 1 58227100 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5467;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58227117 . G GA 543 PASS INDEL;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9067;ERATE=0.0006;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58227171 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9203;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58227195 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5744;AVGPOST=0.9987;RSQ=0.9979;ERATE=0.0004;THETA=0.0011;AC=1253;AN=2184 GT:DS:GL:BD 0.57371795 1 1 58227310 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9990;RSQ=0.9104;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58227337 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0046;AVGPOST=0.9991;RSQ=0.9310;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58227379 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58227404 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.6114;AVGPOST=0.9962;RSQ=0.9934;ERATE=0.0010;THETA=0.0003;AC=1334;AN=2184 GT:DS:GL:BD 0.61080587 1 1 58227487 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58227507 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0035;AVGPOST=0.9991;RSQ=0.8947;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58227539 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6334;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58227575 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58227609 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0055;AVGPOST=0.9998;RSQ=0.9805;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58227690 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.699;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5263;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58227691 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7697;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58228005 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9673;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58228129 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8771;ERATE=0.0007;THETA=0.0031;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58228153 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6589;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58228162 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5004;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58228244 . TA T 2484 PASS INDEL;BAVGPOST=0.994;BRSQ=0.934;LDAF=0.0508;AVGPOST=0.9880;RSQ=0.9088;ERATE=0.0015;THETA=0.0016;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 58228344 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0002;AVGPOST=0.9995;RSQ=0.0796;ERATE=0.0003;THETA=0.0018;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 58228412 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1390;AVGPOST=0.9979;RSQ=0.9940;ERATE=0.0004;THETA=0.0002;AC=299;AN=2184 GT:DS:GL:BD 0.13690476 0 1 58228464 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.705;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5785;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58228472 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0077;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58228613 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0027;AVGPOST=0.9982;RSQ=0.7654;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58228619 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58228742 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9914;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58228780 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0434;AVGPOST=0.9988;RSQ=0.9894;ERATE=0.0004;THETA=0.0002;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 58228789 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58228891 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6432;ERATE=0.0004;THETA=0.0029;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58228971 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6817;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58229012 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0293;AVGPOST=0.9996;RSQ=0.9945;ERATE=0.0003;THETA=0.0003;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 58229076 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0060;AVGPOST=0.9997;RSQ=0.9756;ERATE=0.0004;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58229085 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0448;AVGPOST=0.9999;RSQ=0.9990;ERATE=0.0003;THETA=0.0004;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 58229086 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0068;AVGPOST=0.9993;RSQ=0.9486;ERATE=0.0004;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58229111 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7702;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58229123 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.5981;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58229172 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2256;AVGPOST=0.9977;RSQ=0.9951;ERATE=0.0003;THETA=0.0003;AC=494;AN=2184 GT:DS:GL:BD 0.22619048 0 1 58229206 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.965;LDAF=0.0132;AVGPOST=0.9984;RSQ=0.9455;ERATE=0.0003;THETA=0.0002;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 58229208 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6742;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58229245 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6511;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58229263 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0453;AVGPOST=0.9987;RSQ=0.9883;ERATE=0.0004;THETA=0.0004;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 58229360 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.786;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58229421 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58229622 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7640;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58229635 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2930;AVGPOST=0.9984;RSQ=0.9971;ERATE=0.0005;THETA=0.0002;AC=642;AN=2184 GT:DS:GL:BD 0.29395604 0 1 58229690 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0004;AVGPOST=0.9992;RSQ=0.3142;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 58229832 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58229883 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.7137;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58229895 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.880;LDAF=0.0199;AVGPOST=0.9936;RSQ=0.8749;ERATE=0.0005;THETA=0.0005;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 58229981 . AAC A 151 PASS INDEL;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58230019 rs67536814 CAT C 11654 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0666;AVGPOST=0.9989;RSQ=0.9938;ERATE=0.0004;THETA=0.0003;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 58230024 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0448;AVGPOST=0.9998;RSQ=0.9977;ERATE=0.0003;THETA=0.0003;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 58230029 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0429;AVGPOST=0.9989;RSQ=0.9914;ERATE=0.0003;THETA=0.0005;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 58230044 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9761;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58230100 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0448;AVGPOST=0.9996;RSQ=0.9957;ERATE=0.0003;THETA=0.0002;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 58230112 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.985;LDAF=0.0447;AVGPOST=0.9998;RSQ=0.9977;ERATE=0.0003;THETA=0.0003;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 58230133 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8538;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58230217 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0024;AVGPOST=0.9981;RSQ=0.6774;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58230235 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0018;AVGPOST=0.9997;RSQ=0.9231;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58230242 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1307;AVGPOST=0.9991;RSQ=0.9971;ERATE=0.0003;THETA=0.0005;AC=283;AN=2184 GT:DS:GL:BD 0.12957875 0 1 58230295 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0040;AVGPOST=0.9990;RSQ=0.8891;ERATE=0.0005;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58230320 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2928;AVGPOST=0.9945;RSQ=0.9909;ERATE=0.0011;THETA=0.0004;AC=639;AN=2184 GT:DS:GL:BD 0.29258242 0 1 58230346 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.941;LDAF=0.0098;AVGPOST=0.9979;RSQ=0.9122;ERATE=0.0004;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58230398 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0658;AVGPOST=0.9994;RSQ=0.9964;ERATE=0.0003;THETA=0.0004;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 58230460 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1306;AVGPOST=0.9990;RSQ=0.9965;ERATE=0.0004;THETA=0.0004;AC=282;AN=2184 GT:DS:GL:BD 0.12912089 0 1 58230519 . TTAACA T 16479 PASS INDEL;BAVGPOST=0.989;BRSQ=0.972;LDAF=0.1090;AVGPOST=0.9955;RSQ=0.9815;ERATE=0.0004;THETA=0.0003;AC=238;AN=2184 GT:DS:GL:BD 0.10897436 0 1 58230651 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.755;LDAF=0.0078;AVGPOST=0.9975;RSQ=0.8769;ERATE=0.0003;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58230803 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.0450;AVGPOST=0.9995;RSQ=0.9952;ERATE=0.0004;THETA=0.0003;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 58230865 . AG A 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7077;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58230883 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9233;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58230885 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9503;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58230886 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0450;AVGPOST=0.9994;RSQ=0.9939;ERATE=0.0003;THETA=0.0004;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 58231006 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0004;THETA=0.0022;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58231158 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.5578;AVGPOST=0.9973;RSQ=0.9956;ERATE=0.0004;THETA=0.0003;AC=1218;AN=2184 GT:DS:GL:BD 0.55769229 1 1 58231195 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0026;AVGPOST=0.9983;RSQ=0.7222;ERATE=0.0012;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58231212 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1518;AVGPOST=0.9995;RSQ=0.9985;ERATE=0.0003;THETA=0.0004;AC=329;AN=2184 GT:DS:GL:BD 0.15064102 0 1 58231221 . ACTTTCT A 2603 PASS INDEL;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0130;AVGPOST=0.9987;RSQ=0.9598;ERATE=0.0007;THETA=0.0007;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58231253 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58231264 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0027;AVGPOST=0.9986;RSQ=0.8087;ERATE=0.0004;THETA=0.0019;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58231377 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58231494 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.754;LDAF=0.0053;AVGPOST=0.9955;RSQ=0.6724;ERATE=0.0005;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58231559 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.5602;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58231562 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8777;ERATE=0.0004;THETA=0.0026;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58231601 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58231604 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8804;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58231627 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9443;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58231760 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58231762 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58232061 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.1261;AVGPOST=0.9988;RSQ=0.9965;ERATE=0.0003;THETA=0.0005;AC=273;AN=2184 GT:DS:GL:BD 0.12500000 0 1 58232077 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9682;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58232123 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1494;AVGPOST=0.9996;RSQ=0.9989;ERATE=0.0003;THETA=0.0002;AC=324;AN=2184 GT:DS:GL:BD 0.14835165 0 1 58232329 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5974;AVGPOST=0.9984;RSQ=0.9972;ERATE=0.0005;THETA=0.0005;AC=1304;AN=2184 GT:DS:GL:BD 0.59706962 1 1 58232340 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58232369 rs34902146 ACT A 24604 PASS INDEL;BAVGPOST=0.990;BRSQ=0.965;LDAF=0.1476;AVGPOST=0.9972;RSQ=0.9917;ERATE=0.0004;THETA=0.0003;AC=322;AN=2184 GT:DS:GL:BD 0.14743590 0 1 58232478 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5579;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58232484 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58232485 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5979;AVGPOST=0.9985;RSQ=0.9972;ERATE=0.0005;THETA=0.0003;AC=1304;AN=2184 GT:DS:GL:BD 0.59706962 1 1 58232507 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9128;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58232509 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1700;AVGPOST=0.9965;RSQ=0.9909;ERATE=0.0003;THETA=0.0002;AC=372;AN=2184 GT:DS:GL:BD 0.17032968 0 1 58232593 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0043;AVGPOST=0.9983;RSQ=0.8530;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58232600 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7303;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58232720 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5977;AVGPOST=0.9990;RSQ=0.9980;ERATE=0.0004;THETA=0.0003;AC=1304;AN=2184 GT:DS:GL:BD 0.59706962 1 1 58232759 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7425;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58232821 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8558;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58232925 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0148;AVGPOST=0.9982;RSQ=0.9513;ERATE=0.0004;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58233133 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.863;LDAF=0.9917;AVGPOST=0.9967;RSQ=0.8419;ERATE=0.0003;THETA=0.0003;AC=2168;AN=2184 GT:DS:GL:BD 0.99267399 1 1 58233181 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0024;AVGPOST=0.9986;RSQ=0.7459;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58233219 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7038;ERATE=0.0003;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58233343 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7512;ERATE=0.0006;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58233447 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0136;AVGPOST=0.9990;RSQ=0.9725;ERATE=0.0003;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58233466 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9197;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58233640 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.683;LDAF=0.0043;AVGPOST=0.9955;RSQ=0.5907;ERATE=0.0006;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58233642 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0032;AVGPOST=0.9962;RSQ=0.4551;ERATE=0.0013;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58233698 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.977;LDAF=0.5994;AVGPOST=0.9934;RSQ=0.9894;ERATE=0.0008;THETA=0.0004;AC=1308;AN=2184 GT:DS:GL:BD 0.59890109 1 1 58233761 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.613;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.6956;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58233782 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58233789 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.5898;AVGPOST=0.9903;RSQ=0.9838;ERATE=0.0021;THETA=0.0013;AC=1292;AN=2184 GT:DS:GL:BD 0.59157509 1 1 58233853 . A AAG 320 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0113;AVGPOST=0.9975;RSQ=0.9087;ERATE=0.0006;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58234014 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.5927;AVGPOST=0.9967;RSQ=0.9940;ERATE=0.0006;THETA=0.0002;AC=1292;AN=2184 GT:DS:GL:BD 0.59157509 1 1 58234025 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58234037 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0074;AVGPOST=0.9984;RSQ=0.9191;ERATE=0.0004;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58234133 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.992;LDAF=0.4461;AVGPOST=0.9919;RSQ=0.9878;ERATE=0.0012;THETA=0.0001;AC=974;AN=2184 GT:DS:GL:BD 0.44597068 0 1 58234250 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0069;AVGPOST=0.9966;RSQ=0.7915;ERATE=0.0007;THETA=0.0085;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58234474 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=0.9990;RSQ=0.9610;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58234759 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6011;AVGPOST=0.9965;RSQ=0.9947;ERATE=0.0005;THETA=0.0010;AC=1310;AN=2184 GT:DS:GL:BD 0.59981686 1 1 58234801 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.6563;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58234860 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0079;AVGPOST=0.9996;RSQ=0.9776;ERATE=0.0004;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58234861 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4543;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58235040 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.846;LDAF=0.0057;AVGPOST=0.9984;RSQ=0.9209;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58235041 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.943;LDAF=0.0096;AVGPOST=0.9984;RSQ=0.9300;ERATE=0.0003;THETA=0.0008;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58235203 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6903;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58235253 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0023;AVGPOST=0.9980;RSQ=0.6494;ERATE=0.0010;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58235412 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.936;LDAF=0.0051;AVGPOST=0.9994;RSQ=0.9468;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58235444 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6404;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58235497 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.4523;AVGPOST=0.9973;RSQ=0.9962;ERATE=0.0004;THETA=0.0006;AC=987;AN=2184 GT:DS:GL:BD 0.45192307 0 1 58235534 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0097;AVGPOST=0.9998;RSQ=0.9909;ERATE=0.0003;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58235552 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6966;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58235557 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6745;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58235590 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.957;LDAF=0.0042;AVGPOST=0.9982;RSQ=0.8210;ERATE=0.0005;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58235809 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58235949 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0049;AVGPOST=0.9992;RSQ=0.9291;ERATE=0.0004;THETA=0.0001;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58235997 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58236090 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0013;AVGPOST=0.9980;RSQ=0.3924;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58236147 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4477;AVGPOST=0.9981;RSQ=0.9969;ERATE=0.0005;THETA=0.0002;AC=979;AN=2184 GT:DS:GL:BD 0.44826007 0 1 58236402 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1461;AVGPOST=0.9977;RSQ=0.9935;ERATE=0.0003;THETA=0.0005;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 58236465 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0023;AVGPOST=0.9993;RSQ=0.8573;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58236582 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0017;AVGPOST=0.9996;RSQ=0.9092;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58236714 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0097;AVGPOST=0.9997;RSQ=0.9871;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58236736 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0075;AVGPOST=0.9989;RSQ=0.9357;ERATE=0.0009;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58236843 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0056;AVGPOST=0.9997;RSQ=0.9730;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58236918 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5426;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58236946 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.915;LDAF=0.0225;AVGPOST=0.9981;RSQ=0.9698;ERATE=0.0003;THETA=0.0007;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 58237008 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.759;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6228;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58237100 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0115;AVGPOST=0.9987;RSQ=0.9468;ERATE=0.0004;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58237270 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7102;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58237321 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0412;AVGPOST=0.9985;RSQ=0.9855;ERATE=0.0003;THETA=0.0003;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 58237352 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6204;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58237369 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6696;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58237448 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8081;ERATE=0.0016;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58237611 . TC T 270 PASS INDEL;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58237651 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9469;ERATE=0.0003;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58237673 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7684;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58237695 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0025;AVGPOST=0.9985;RSQ=0.7550;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58237712 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.824;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.6993;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58237731 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58237734 . C CA 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5410;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58237857 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0008;AVGPOST=0.9986;RSQ=0.3630;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58237921 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6442;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58237933 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0036;AVGPOST=0.9991;RSQ=0.9012;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58238081 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58238132 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0421;AVGPOST=0.9994;RSQ=0.9933;ERATE=0.0003;THETA=0.0003;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 58238167 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6366;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58238200 . C CAAGT 437 PASS INDEL;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0025;AVGPOST=0.9973;RSQ=0.5848;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58238246 . ATGTTTAACT A 3043 PASS INDEL;BAVGPOST=0.998;BRSQ=0.890;LDAF=0.0129;AVGPOST=0.9997;RSQ=0.9879;ERATE=0.0003;THETA=0.0002;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 58238298 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.601;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8030;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58238365 . A AT 45 PASS INDEL;BAVGPOST=0.993;BRSQ=0.633;LDAF=0.0074;AVGPOST=0.9907;RSQ=0.5432;ERATE=0.0011;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58238511 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0032;AVGPOST=0.9980;RSQ=0.7506;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58238545 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1447;AVGPOST=0.9988;RSQ=0.9959;ERATE=0.0004;THETA=0.0002;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 58238549 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0020;AVGPOST=0.9981;RSQ=0.6080;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58238627 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6856;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58238660 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.958;LDAF=0.0109;AVGPOST=0.9989;RSQ=0.9661;ERATE=0.0003;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58238669 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6599;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58238680 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.9085;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58238692 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5942;AVGPOST=0.9939;RSQ=0.9907;ERATE=0.0016;THETA=0.0002;AC=1299;AN=2184 GT:DS:GL:BD 0.59478021 1 1 58238714 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.815;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9005;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58238789 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58238892 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7467;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58238931 . G GTA 1513 PASS INDEL;BAVGPOST=0.997;BRSQ=0.889;LDAF=0.0159;AVGPOST=0.9979;RSQ=0.9429;ERATE=0.0005;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58238936 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7509;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58238939 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58239073 . TA T 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58239237 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.9987;AVGPOST=0.9991;RSQ=0.6966;ERATE=0.0004;THETA=0.0002;AC=2182;AN=2184 GT:DS:GL:BD 0.99908423 1 1 58239416 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0040;AVGPOST=0.9989;RSQ=0.8954;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58239603 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8350;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58239653 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.983;LDAF=0.1303;AVGPOST=0.9992;RSQ=0.9970;ERATE=0.0004;THETA=0.0004;AC=282;AN=2184 GT:DS:GL:BD 0.12912089 0 1 58239661 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.1072;AVGPOST=0.9959;RSQ=0.9828;ERATE=0.0004;THETA=0.0003;AC=232;AN=2184 GT:DS:GL:BD 0.10622711 0 1 58239735 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0029;AVGPOST=0.9979;RSQ=0.7260;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58239742 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0107;AVGPOST=0.9990;RSQ=0.9602;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58239808 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4488;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58239812 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0041;AVGPOST=0.9977;RSQ=0.8040;ERATE=0.0006;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58239827 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.989;LDAF=0.4482;AVGPOST=0.9811;RSQ=0.9709;ERATE=0.0036;THETA=0.0004;AC=981;AN=2184 GT:DS:GL:BD 0.44917583 0 1 58239836 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.1305;AVGPOST=0.9990;RSQ=0.9965;ERATE=0.0004;THETA=0.0008;AC=282;AN=2184 GT:DS:GL:BD 0.12912089 0 1 58239854 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0434;AVGPOST=0.9984;RSQ=0.9825;ERATE=0.0003;THETA=0.0002;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 58239936 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0026;AVGPOST=0.9989;RSQ=0.8090;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58240030 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0099;AVGPOST=0.9993;RSQ=0.9646;ERATE=0.0005;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58240124 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7553;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58240343 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1306;AVGPOST=0.9990;RSQ=0.9964;ERATE=0.0005;THETA=0.0003;AC=282;AN=2184 GT:DS:GL:BD 0.12912089 0 1 58240503 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0040;AVGPOST=0.9983;RSQ=0.8328;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58240504 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.565;LDAF=0.0011;AVGPOST=0.9984;RSQ=0.3527;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58240584 . AG A 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.3593;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58240604 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.938;LDAF=0.0104;AVGPOST=0.9976;RSQ=0.9063;ERATE=0.0005;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58240728 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1441;AVGPOST=0.9992;RSQ=0.9974;ERATE=0.0004;THETA=0.0006;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 58240785 . CCT C 718 PASS INDEL;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0098;AVGPOST=0.9971;RSQ=0.8940;ERATE=0.0004;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58240822 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9241;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58240839 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4234;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58240917 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0067;AVGPOST=0.9981;RSQ=0.8800;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58240923 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0100;AVGPOST=0.9992;RSQ=0.9625;ERATE=0.0003;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58240933 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0031;AVGPOST=0.9989;RSQ=0.8380;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58240970 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0032;AVGPOST=0.9986;RSQ=0.8276;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58241040 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1309;AVGPOST=0.9984;RSQ=0.9955;ERATE=0.0004;THETA=0.0004;AC=284;AN=2184 GT:DS:GL:BD 0.13003664 0 1 58241064 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5722;ERATE=0.0008;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58241118 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0048;AVGPOST=0.9989;RSQ=0.9024;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58241127 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0042;AVGPOST=0.9975;RSQ=0.7764;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58241437 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4490;AVGPOST=0.9974;RSQ=0.9962;ERATE=0.0003;THETA=0.0005;AC=982;AN=2184 GT:DS:GL:BD 0.44963369 0 1 58241468 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.775;LDAF=0.0087;AVGPOST=0.9935;RSQ=0.7253;ERATE=0.0007;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58241485 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1320;AVGPOST=0.9976;RSQ=0.9930;ERATE=0.0004;THETA=0.0017;AC=286;AN=2184 GT:DS:GL:BD 0.13095239 0 1 58241491 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.647;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.3736;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58241494 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6414;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58241514 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8333;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58241825 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.994;LDAF=0.6013;AVGPOST=0.9959;RSQ=0.9934;ERATE=0.0009;THETA=0.0004;AC=1311;AN=2184 GT:DS:GL:BD 0.60027474 1 1 58241907 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5599;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58242019 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9366;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58242156 . AT A 4804 PASS INDEL;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0425;AVGPOST=0.9981;RSQ=0.9817;ERATE=0.0003;THETA=0.0005;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 58242706 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5979;AVGPOST=0.9936;RSQ=0.9892;ERATE=0.0013;THETA=0.0002;AC=1307;AN=2184 GT:DS:GL:BD 0.59844321 1 1 58242877 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.648;LDAF=0.0065;AVGPOST=0.9954;RSQ=0.6927;ERATE=0.0007;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58243015 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0146;AVGPOST=0.9981;RSQ=0.9408;ERATE=0.0004;THETA=0.0002;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 58243031 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0028;AVGPOST=0.9970;RSQ=0.5904;ERATE=0.0012;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58243057 . A ATT 14385 PASS INDEL;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5943;AVGPOST=0.9861;RSQ=0.9772;ERATE=0.0016;THETA=0.0007;AC=1301;AN=2184 GT:DS:GL:BD 0.59569597 1 1 58243098 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.947;LDAF=0.1472;AVGPOST=0.9917;RSQ=0.9781;ERATE=0.0010;THETA=0.0011;AC=321;AN=2184 GT:DS:GL:BD 0.14697802 0 1 58243128 . GTC G 96 PASS INDEL;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0033;AVGPOST=0.9963;RSQ=0.5708;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58243173 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5949;AVGPOST=0.9920;RSQ=0.9860;ERATE=0.0009;THETA=0.0007;AC=1299;AN=2184 GT:DS:GL:BD 0.59478021 1 1 58243186 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4648;ERATE=0.0004;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58243230 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7511;ERATE=0.0003;THETA=0.0029;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58243248 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.958;LDAF=0.0137;AVGPOST=0.9972;RSQ=0.9244;ERATE=0.0004;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 58243284 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0418;AVGPOST=0.9964;RSQ=0.9674;ERATE=0.0003;THETA=0.0029;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 58243310 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58243340 rs71747740 GTTTCC G 1315 PASS INDEL;BAVGPOST=0.992;BRSQ=0.677;LDAF=0.0127;AVGPOST=0.9904;RSQ=0.6983;ERATE=0.0006;THETA=0.0010;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58243355 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.661;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.5579;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58243460 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5682;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58243493 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1442;AVGPOST=0.9969;RSQ=0.9905;ERATE=0.0005;THETA=0.0009;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 58243570 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0221;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58243583 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0042;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58243654 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7946;ERATE=0.0003;THETA=0.0051;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58243665 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.847;LDAF=0.0034;AVGPOST=0.9993;RSQ=0.9080;ERATE=0.0008;THETA=0.0025;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58243831 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7255;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58243932 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9359;ERATE=0.0003;THETA=0.0048;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58243935 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9858;ERATE=0.0004;THETA=0.0192;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58243953 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6055;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58244052 . TC T 32 PASS INDEL;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4509;ERATE=0.0004;THETA=0.0146;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58244099 . A AG 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6860;ERATE=0.0004;THETA=0.0066;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58244116 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9401;ERATE=0.0003;THETA=0.0111;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58244256 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0030;AVGPOST=0.9980;RSQ=0.7614;ERATE=0.0006;THETA=0.0039;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58244364 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0038;AVGPOST=0.9978;RSQ=0.7601;ERATE=0.0020;THETA=0.0100;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58244862 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5917;ERATE=0.0003;THETA=0.0104;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58244904 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0004;THETA=0.0045;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58244928 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.987;LDAF=0.3478;AVGPOST=0.9926;RSQ=0.9868;ERATE=0.0004;THETA=0.0007;AC=757;AN=2184 GT:DS:GL:BD 0.34661171 0 1 58244952 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1223;AVGPOST=0.9967;RSQ=0.9903;ERATE=0.0005;THETA=0.0003;AC=264;AN=2184 GT:DS:GL:BD 0.12087912 0 1 58244986 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0080;AVGPOST=0.9977;RSQ=0.8806;ERATE=0.0003;THETA=0.0054;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58245254 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0003;THETA=0.0048;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58245255 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8224;ERATE=0.0004;THETA=0.0055;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58245322 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.8262;AVGPOST=0.9965;RSQ=0.9905;ERATE=0.0004;THETA=0.0006;AC=1805;AN=2184 GT:DS:GL:BD 0.82646519 1 1 58245359 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58245434 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5970;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58245466 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0040;AVGPOST=0.9989;RSQ=0.9065;ERATE=0.0003;THETA=0.0015;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58245488 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58245513 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6929;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58245530 . TC T 64 PASS INDEL;BAVGPOST=1.000;BRSQ=0.724;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4723;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58245575 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0004;THETA=0.0029;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58245641 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5199;AVGPOST=0.9981;RSQ=0.9970;ERATE=0.0004;THETA=0.0004;AC=1137;AN=2184 GT:DS:GL:BD 0.52060437 1 1 58245668 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.824;LDAF=0.0044;AVGPOST=0.9980;RSQ=0.8084;ERATE=0.0006;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58245781 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4901;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58245829 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.625;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6199;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58245856 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0580;AVGPOST=0.9989;RSQ=0.9926;ERATE=0.0006;THETA=0.0007;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 58245909 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58245940 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.5170;AVGPOST=0.9967;RSQ=0.9944;ERATE=0.0009;THETA=0.0003;AC=1130;AN=2184 GT:DS:GL:BD 0.51739925 1 1 58246064 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0023;AVGPOST=0.9988;RSQ=0.7649;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58246111 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.899;LDAF=0.0108;AVGPOST=0.9962;RSQ=0.8758;ERATE=0.0007;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58246141 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0098;AVGPOST=0.9994;RSQ=0.9722;ERATE=0.0003;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58246228 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.9104;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58246259 . GA G 327 PASS INDEL;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0076;AVGPOST=0.9965;RSQ=0.8407;ERATE=0.0005;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58246298 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5156;AVGPOST=0.9963;RSQ=0.9936;ERATE=0.0009;THETA=0.0005;AC=1129;AN=2184 GT:DS:GL:BD 0.51694137 1 1 58246302 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.951;LDAF=0.0165;AVGPOST=0.9989;RSQ=0.9711;ERATE=0.0004;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 58246376 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58246432 . T TC 8449 PASS INDEL;BAVGPOST=0.930;BRSQ=0.879;LDAF=0.4910;AVGPOST=0.9586;RSQ=0.9369;ERATE=0.0018;THETA=0.0005;AC=1108;AN=2184 GT:DS:GL:BD 0.50732601 1 1 58246433 . C CT 261 PASS INDEL;BAVGPOST=0.988;BRSQ=0.507;LDAF=0.0326;AVGPOST=0.9612;RSQ=0.5290;ERATE=0.0040;THETA=0.0006;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 58246434 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.958;BRSQ=0.922;LDAF=0.4782;AVGPOST=0.9243;RSQ=0.8898;ERATE=0.0107;THETA=0.0012;AC=1055;AN=2184 GT:DS:GL:BD 0.48305860 0 1 58247020 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1605;AVGPOST=0.9990;RSQ=0.9966;ERATE=0.0004;THETA=0.0002;AC=350;AN=2184 GT:DS:GL:BD 0.16025642 0 1 58247148 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8096;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58247182 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1607;AVGPOST=0.9979;RSQ=0.9936;ERATE=0.0005;THETA=0.0003;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 58247217 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0100;AVGPOST=0.9991;RSQ=0.9564;ERATE=0.0004;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58247294 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1585;AVGPOST=0.9974;RSQ=0.9935;ERATE=0.0004;THETA=0.0001;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 58247409 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.983;LDAF=0.1607;AVGPOST=0.9916;RSQ=0.9772;ERATE=0.0004;THETA=0.0005;AC=350;AN=2184 GT:DS:GL:BD 0.16025642 0 1 58247444 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0086;AVGPOST=0.9992;RSQ=0.9599;ERATE=0.0003;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58247445 . A AG 27 PASS INDEL;BAVGPOST=1.000;BRSQ=0.727;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.4547;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58247447 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.714;LDAF=0.0030;AVGPOST=0.9984;RSQ=0.7851;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58247578 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1598;AVGPOST=0.9983;RSQ=0.9948;ERATE=0.0004;THETA=0.0003;AC=348;AN=2184 GT:DS:GL:BD 0.15934066 0 1 58247623 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5646;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58247670 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5542;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58247692 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0040;AVGPOST=0.9992;RSQ=0.9066;ERATE=0.0004;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58247711 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.779;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.7918;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58247723 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7579;AVGPOST=0.9982;RSQ=0.9965;ERATE=0.0003;THETA=0.0004;AC=1654;AN=2184 GT:DS:GL:BD 0.75732601 1 1 58247772 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1596;AVGPOST=0.9984;RSQ=0.9954;ERATE=0.0004;THETA=0.0002;AC=347;AN=2184 GT:DS:GL:BD 0.15888278 0 1 58247837 rs63351960 A AT 79293 PASS INDEL;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.7369;AVGPOST=0.9958;RSQ=0.9914;ERATE=0.0010;THETA=0.0004;AC=1611;AN=2184 GT:DS:GL:BD 0.73763734 1 1 58247848 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7572;AVGPOST=0.9975;RSQ=0.9947;ERATE=0.0004;THETA=0.0006;AC=1653;AN=2184 GT:DS:GL:BD 0.75686812 1 1 58247962 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1595;AVGPOST=0.9986;RSQ=0.9959;ERATE=0.0004;THETA=0.0003;AC=348;AN=2184 GT:DS:GL:BD 0.15934066 0 1 58248159 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58248203 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.841;LDAF=0.0029;AVGPOST=0.9979;RSQ=0.7163;ERATE=0.0006;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58248372 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3565;AVGPOST=0.9973;RSQ=0.9949;ERATE=0.0006;THETA=0.0003;AC=781;AN=2184 GT:DS:GL:BD 0.35760072 0 1 58248514 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5951;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58248523 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0020;AVGPOST=0.9976;RSQ=0.5225;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58248553 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7116;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58248656 . TCCC T 76 PASS INDEL;BAVGPOST=0.995;BRSQ=0.333;LDAF=0.0064;AVGPOST=0.9895;RSQ=0.3359;ERATE=0.0017;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58248709 . C CTCTT 5866 PASS INDEL;BAVGPOST=0.838;BRSQ=0.666;LDAF=0.3394;AVGPOST=0.7775;RSQ=0.6127;ERATE=0.0499;THETA=0.0002;AC=643;AN=2184 GT:DS:GL:BD 0.29441392 0 1 58248720 rs3081036 T TTTCC 1245 PASS INDEL;BAVGPOST=0.848;BRSQ=0.647;LDAF=0.2341;AVGPOST=0.8184;RSQ=0.5983;ERATE=0.0182;THETA=0.0002;AC=426;AN=2184 GT:DS:GL:BD 0.19505495 0 1 58248757 rs71051259 TTCTC T 7574 PASS INDEL;BAVGPOST=0.959;BRSQ=0.825;LDAF=0.1554;AVGPOST=0.9807;RSQ=0.9464;ERATE=0.0007;THETA=0.0006;AC=343;AN=2184 GT:DS:GL:BD 0.15705128 0 1 58248769 . C CT 136 PASS INDEL;BAVGPOST=0.946;BRSQ=0.508;LDAF=0.0629;AVGPOST=0.9489;RSQ=0.6784;ERATE=0.0017;THETA=0.0002;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 58248770 . TCTC T 1729 PASS INDEL;BAVGPOST=0.962;BRSQ=0.834;LDAF=0.1434;AVGPOST=0.9758;RSQ=0.9230;ERATE=0.0012;THETA=0.0002;AC=318;AN=2184 GT:DS:GL:BD 0.14560440 0 1 58248867 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0087;AVGPOST=0.9975;RSQ=0.8778;ERATE=0.0005;THETA=0.0009;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58249034 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58249119 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.6377;AVGPOST=0.9991;RSQ=0.9984;ERATE=0.0004;THETA=0.0003;AC=1391;AN=2184 GT:DS:GL:BD 0.63690478 1 1 58249148 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.7644;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58249184 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0097;AVGPOST=0.9998;RSQ=0.9909;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58249268 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0563;AVGPOST=0.9986;RSQ=0.9928;ERATE=0.0004;THETA=0.0002;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 58249283 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0162;AVGPOST=0.9995;RSQ=0.9859;ERATE=0.0003;THETA=0.0006;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 58249359 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6848;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58249545 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0160;AVGPOST=0.9999;RSQ=0.9974;ERATE=0.0003;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 58249569 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0040;AVGPOST=0.9983;RSQ=0.8529;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58249575 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0098;AVGPOST=0.9995;RSQ=0.9777;ERATE=0.0004;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58249658 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5133;AVGPOST=0.9984;RSQ=0.9977;ERATE=0.0003;THETA=0.0004;AC=1122;AN=2184 GT:DS:GL:BD 0.51373625 1 1 58249736 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.8028;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58249894 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0289;AVGPOST=0.9996;RSQ=0.9933;ERATE=0.0004;THETA=0.0003;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 58249967 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0062;AVGPOST=0.9989;RSQ=0.9171;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58250020 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.690;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7184;ERATE=0.0007;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58250064 . C CA 91 PASS INDEL;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.6445;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58250067 . AAAAC A 250 PASS INDEL;BAVGPOST=0.999;BRSQ=0.811;LDAF=0.0032;AVGPOST=0.9973;RSQ=0.7103;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58250083 . C CAAAA 458 PASS INDEL;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0034;AVGPOST=0.9971;RSQ=0.6612;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58250122 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6265;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58250196 . G GA 293 PASS INDEL;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0036;AVGPOST=0.9984;RSQ=0.8062;ERATE=0.0005;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58250362 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58250485 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0032;AVGPOST=0.9985;RSQ=0.8426;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58250543 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7938;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58250800 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0036;AVGPOST=0.9970;RSQ=0.6721;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58250815 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6447;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58250816 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0152;AVGPOST=0.9984;RSQ=0.9604;ERATE=0.0004;THETA=0.0002;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58250857 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0047;AVGPOST=0.9982;RSQ=0.8565;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58250864 . G GA 34 PASS INDEL;BAVGPOST=0.999;BRSQ=0.637;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5771;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58250933 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9282;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58250992 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4801;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58251060 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5590;AVGPOST=0.9982;RSQ=0.9971;ERATE=0.0006;THETA=0.0004;AC=1221;AN=2184 GT:DS:GL:BD 0.55906594 1 1 58251248 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7372;AVGPOST=0.9958;RSQ=0.9923;ERATE=0.0011;THETA=0.0005;AC=1609;AN=2184 GT:DS:GL:BD 0.73672163 1 1 58251305 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0041;AVGPOST=0.9992;RSQ=0.9223;ERATE=0.0004;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58251320 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.851;LDAF=0.0108;AVGPOST=0.9964;RSQ=0.8803;ERATE=0.0003;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58251321 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5625;AVGPOST=0.9979;RSQ=0.9965;ERATE=0.0005;THETA=0.0003;AC=1228;AN=2184 GT:DS:GL:BD 0.56227106 1 1 58251554 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8418;ERATE=0.0003;THETA=0.0030;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58251574 . G GCAT 499 PASS INDEL;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0031;AVGPOST=0.9992;RSQ=0.8911;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58251625 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58251649 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58251802 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2454;AVGPOST=0.9989;RSQ=0.9978;ERATE=0.0003;THETA=0.0004;AC=535;AN=2184 GT:DS:GL:BD 0.24496336 0 1 58251841 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0128;AVGPOST=0.9988;RSQ=0.9639;ERATE=0.0004;THETA=0.0002;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 58251948 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.726;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5354;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58251988 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5585;AVGPOST=0.9958;RSQ=0.9938;ERATE=0.0006;THETA=0.0004;AC=1218;AN=2184 GT:DS:GL:BD 0.55769229 1 1 58252029 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.5073;ERATE=0.0004;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58252057 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58252152 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8702;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58252292 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0065;AVGPOST=0.9991;RSQ=0.9461;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58252342 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.780;LDAF=0.0029;AVGPOST=0.9970;RSQ=0.6057;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58252383 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0154;AVGPOST=0.9990;RSQ=0.9727;ERATE=0.0005;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58252385 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.7955;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58252511 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58252553 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8116;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58252830 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0362;AVGPOST=0.9986;RSQ=0.9853;ERATE=0.0004;THETA=0.0009;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 58252831 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0045;AVGPOST=0.9988;RSQ=0.9001;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58252861 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0575;AVGPOST=0.9987;RSQ=0.9920;ERATE=0.0004;THETA=0.0002;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 58252985 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0042;AVGPOST=0.9993;RSQ=0.9274;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58253042 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8277;AVGPOST=0.9973;RSQ=0.9923;ERATE=0.0004;THETA=0.0002;AC=1809;AN=2184 GT:DS:GL:BD 0.82829672 1 1 58253057 . A AT 134 PASS INDEL;BAVGPOST=0.996;BRSQ=0.598;LDAF=0.0109;AVGPOST=0.9847;RSQ=0.4192;ERATE=0.0036;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58253215 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0071;AVGPOST=0.9989;RSQ=0.9300;ERATE=0.0004;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58253363 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0098;AVGPOST=0.9995;RSQ=0.9776;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58253364 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.692;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7557;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58253422 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0699;AVGPOST=0.9989;RSQ=0.9941;ERATE=0.0004;THETA=0.0002;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 58253483 . T TA 26 PASS INDEL;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6397;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58253505 . AT A 6043 PASS INDEL;BAVGPOST=0.994;BRSQ=0.960;LDAF=0.0564;AVGPOST=0.9974;RSQ=0.9842;ERATE=0.0005;THETA=0.0003;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 58253660 . A AT 70 PASS INDEL;BAVGPOST=0.940;BRSQ=0.294;LDAF=0.0492;AVGPOST=0.9308;RSQ=0.4233;ERATE=0.0064;THETA=0.0012;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 58253677 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.787;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.7275;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58253703 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2605;AVGPOST=0.9989;RSQ=0.9977;ERATE=0.0004;THETA=0.0003;AC=569;AN=2184 GT:DS:GL:BD 0.26053113 0 1 58253751 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5882;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58253896 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7941;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58253910 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7492;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58253966 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58253970 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7399;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58254245 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7202;AVGPOST=0.9853;RSQ=0.9738;ERATE=0.0028;THETA=0.0006;AC=1576;AN=2184 GT:DS:GL:BD 0.72161174 1 1 58254263 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0146;AVGPOST=0.9996;RSQ=0.9886;ERATE=0.0003;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58254286 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0090;AVGPOST=0.9990;RSQ=0.9565;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58254317 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.937;BRSQ=0.901;LDAF=0.4186;AVGPOST=0.9485;RSQ=0.9327;ERATE=0.0009;THETA=0.0004;AC=902;AN=2184 GT:DS:GL:BD 0.41300365 0 1 58254340 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58254631 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6025;AVGPOST=0.9978;RSQ=0.9961;ERATE=0.0006;THETA=0.0003;AC=1317;AN=2184 GT:DS:GL:BD 0.60302198 1 1 58254860 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1368;AVGPOST=0.9989;RSQ=0.9962;ERATE=0.0005;THETA=0.0001;AC=296;AN=2184 GT:DS:GL:BD 0.13553114 0 1 58254869 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0080;AVGPOST=0.9950;RSQ=0.7406;ERATE=0.0007;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58254933 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.943;LDAF=0.0190;AVGPOST=0.9972;RSQ=0.9398;ERATE=0.0003;THETA=0.0003;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 58255002 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6105;AVGPOST=0.9981;RSQ=0.9969;ERATE=0.0004;THETA=0.0003;AC=1335;AN=2184 GT:DS:GL:BD 0.61126375 1 1 58255018 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.730;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7817;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58255076 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0031;AVGPOST=0.9994;RSQ=0.9149;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58255090 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0062;AVGPOST=0.9973;RSQ=0.8259;ERATE=0.0004;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58255182 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.978;LDAF=0.1012;AVGPOST=0.9956;RSQ=0.9831;ERATE=0.0004;THETA=0.0004;AC=219;AN=2184 GT:DS:GL:BD 0.10027473 0 1 58255214 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6100;AVGPOST=0.9977;RSQ=0.9961;ERATE=0.0006;THETA=0.0003;AC=1335;AN=2184 GT:DS:GL:BD 0.61126375 1 1 58255332 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0008;AVGPOST=0.9999;RSQ=0.9310;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58255339 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58255528 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0603;AVGPOST=0.9992;RSQ=0.9952;ERATE=0.0003;THETA=0.0005;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 58255552 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9612;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58255593 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0565;AVGPOST=0.9981;RSQ=0.9884;ERATE=0.0003;THETA=0.0003;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 58255633 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.855;LDAF=0.0032;AVGPOST=1.0000;RSQ=0.9932;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58255642 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0078;AVGPOST=0.9986;RSQ=0.9397;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58255692 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.938;LDAF=0.0385;AVGPOST=0.9944;RSQ=0.9415;ERATE=0.0003;THETA=0.0004;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 58255701 . TA T 104 PASS INDEL;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0017;AVGPOST=0.9987;RSQ=0.7098;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58255732 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58255774 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.863;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9370;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58255823 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7175;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58255845 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0098;AVGPOST=0.9997;RSQ=0.9844;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58255942 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4052;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58255955 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.978;LDAF=0.0282;AVGPOST=0.9988;RSQ=0.9853;ERATE=0.0003;THETA=0.0004;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 58255956 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.7869;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58256000 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0223;AVGPOST=0.9992;RSQ=0.9862;ERATE=0.0003;THETA=0.0005;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 58256001 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.599;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7793;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58256023 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58256148 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3656;AVGPOST=0.9966;RSQ=0.9938;ERATE=0.0004;THETA=0.0002;AC=800;AN=2184 GT:DS:GL:BD 0.36630037 0 1 58256184 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58256191 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3656;AVGPOST=0.9991;RSQ=0.9983;ERATE=0.0003;THETA=0.0002;AC=800;AN=2184 GT:DS:GL:BD 0.36630037 0 1 58256214 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0849;AVGPOST=0.9997;RSQ=0.9985;ERATE=0.0003;THETA=0.0002;AC=186;AN=2184 GT:DS:GL:BD 0.08516484 0 1 58256228 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0088;AVGPOST=0.9990;RSQ=0.9539;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58256301 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58256311 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0041;AVGPOST=0.9981;RSQ=0.8090;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58256441 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58256459 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58256479 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7617;AVGPOST=0.9993;RSQ=0.9984;ERATE=0.0005;THETA=0.0002;AC=1663;AN=2184 GT:DS:GL:BD 0.76144689 1 1 58256497 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58256537 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0853;AVGPOST=0.9994;RSQ=0.9971;ERATE=0.0004;THETA=0.0002;AC=186;AN=2184 GT:DS:GL:BD 0.08516484 0 1 58256544 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.3656;AVGPOST=0.9958;RSQ=0.9923;ERATE=0.0011;THETA=0.0003;AC=800;AN=2184 GT:DS:GL:BD 0.36630037 0 1 58256586 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8879;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58256837 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0563;AVGPOST=0.9998;RSQ=0.9984;ERATE=0.0003;THETA=0.0002;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 58256909 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7481;AVGPOST=0.9988;RSQ=0.9972;ERATE=0.0005;THETA=0.0002;AC=1633;AN=2184 GT:DS:GL:BD 0.74771065 1 1 58256986 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58257007 . TC T 145 PASS INDEL;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.6975;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58257032 . ACTT A 70 PASS INDEL;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58257086 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1375;AVGPOST=0.9982;RSQ=0.9955;ERATE=0.0004;THETA=0.0003;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 58257088 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7684;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58257109 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0028;AVGPOST=0.9963;RSQ=0.4874;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58257250 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3659;AVGPOST=0.9981;RSQ=0.9970;ERATE=0.0005;THETA=0.0003;AC=799;AN=2184 GT:DS:GL:BD 0.36584249 0 1 58257359 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.9026;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58257367 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0340;AVGPOST=0.9986;RSQ=0.9854;ERATE=0.0003;THETA=0.0010;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 58257408 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0146;AVGPOST=0.9998;RSQ=0.9944;ERATE=0.0003;THETA=0.0002;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58257437 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0564;AVGPOST=0.9996;RSQ=0.9971;ERATE=0.0004;THETA=0.0002;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 58257497 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58257536 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.860;LDAF=0.0033;AVGPOST=0.9988;RSQ=0.8652;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58257587 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4219;AVGPOST=0.9991;RSQ=0.9984;ERATE=0.0003;THETA=0.0002;AC=923;AN=2184 GT:DS:GL:BD 0.42261904 0 1 58257601 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6728;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58257668 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.738;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.4866;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58257671 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7445;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58257808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0130;AVGPOST=0.9983;RSQ=0.9572;ERATE=0.0003;THETA=0.0007;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 58258049 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0234;AVGPOST=0.9997;RSQ=0.9934;ERATE=0.0003;THETA=0.0006;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 58258134 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.7100;AVGPOST=0.9984;RSQ=0.9970;ERATE=0.0004;THETA=0.0002;AC=1549;AN=2184 GT:DS:GL:BD 0.70924908 1 1 58258197 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0095;AVGPOST=0.9997;RSQ=0.9862;ERATE=0.0003;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58258242 . TCA T 61 PASS INDEL;BAVGPOST=0.999;BRSQ=0.651;LDAF=0.0020;AVGPOST=0.9972;RSQ=0.5425;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58258276 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1227;AVGPOST=0.9995;RSQ=0.9982;ERATE=0.0004;THETA=0.0003;AC=265;AN=2184 GT:DS:GL:BD 0.12133700 0 1 58258337 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58258649 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4908;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58258854 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.697;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58258898 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58259108 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0169;AVGPOST=0.9991;RSQ=0.9781;ERATE=0.0003;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 58259156 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5852;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58259168 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0576;AVGPOST=0.9985;RSQ=0.9917;ERATE=0.0004;THETA=0.0006;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 58259263 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0167;AVGPOST=0.9995;RSQ=0.9843;ERATE=0.0004;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 58259330 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6619;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58259348 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5219;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58259463 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6327;AVGPOST=0.9974;RSQ=0.9959;ERATE=0.0008;THETA=0.0002;AC=1385;AN=2184 GT:DS:GL:BD 0.63415754 1 1 58259509 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6319;AVGPOST=0.9989;RSQ=0.9982;ERATE=0.0004;THETA=0.0002;AC=1381;AN=2184 GT:DS:GL:BD 0.63232601 1 1 58259705 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1225;AVGPOST=0.9976;RSQ=0.9930;ERATE=0.0004;THETA=0.0004;AC=265;AN=2184 GT:DS:GL:BD 0.12133700 0 1 58259725 . TG T 150 PASS INDEL;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6829;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58259945 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0699;AVGPOST=0.9999;RSQ=0.9994;ERATE=0.0003;THETA=0.0003;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 58260028 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1299;AVGPOST=0.9986;RSQ=0.9957;ERATE=0.0003;THETA=0.0002;AC=281;AN=2184 GT:DS:GL:BD 0.12866300 0 1 58260034 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0074;AVGPOST=0.9997;RSQ=0.9811;ERATE=0.0004;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58260067 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.7582;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58260093 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1302;AVGPOST=0.9990;RSQ=0.9968;ERATE=0.0003;THETA=0.0002;AC=281;AN=2184 GT:DS:GL:BD 0.12866300 0 1 58260149 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58260172 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5667;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58260181 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58260332 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0055;AVGPOST=0.9998;RSQ=0.9801;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58260442 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0092;AVGPOST=0.9999;RSQ=0.9952;ERATE=0.0003;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58260466 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9763;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58260532 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0564;AVGPOST=0.9973;RSQ=0.9844;ERATE=0.0004;THETA=0.0003;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 58260540 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6303;AVGPOST=0.9971;RSQ=0.9959;ERATE=0.0004;THETA=0.0010;AC=1376;AN=2184 GT:DS:GL:BD 0.63003665 1 1 58260558 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7042;ERATE=0.0003;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58260645 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58260655 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58260760 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5694;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58260781 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6431;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58260808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58260924 . TA T 647 PASS INDEL;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0182;AVGPOST=0.9937;RSQ=0.8571;ERATE=0.0006;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 58260944 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.677;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5526;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58260994 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.3821;AVGPOST=0.9970;RSQ=0.9950;ERATE=0.0004;THETA=0.0003;AC=832;AN=2184 GT:DS:GL:BD 0.38095239 0 1 58261186 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.693;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4912;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58261224 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1213;AVGPOST=0.9952;RSQ=0.9836;ERATE=0.0008;THETA=0.0008;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 58261241 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0070;AVGPOST=0.9978;RSQ=0.8623;ERATE=0.0007;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58261342 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0171;AVGPOST=0.9963;RSQ=0.9079;ERATE=0.0007;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58261533 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0022;AVGPOST=0.9973;RSQ=0.5111;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58261659 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.621;LDAF=0.0020;AVGPOST=0.9968;RSQ=0.3337;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58261668 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0038;AVGPOST=0.9988;RSQ=0.8628;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58261685 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.982;LDAF=0.1285;AVGPOST=0.9959;RSQ=0.9861;ERATE=0.0006;THETA=0.0005;AC=277;AN=2184 GT:DS:GL:BD 0.12683150 0 1 58261799 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58261817 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0035;AVGPOST=0.9977;RSQ=0.7358;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58261922 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0026;AVGPOST=0.9992;RSQ=0.8616;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58261929 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0099;AVGPOST=0.9982;RSQ=0.9238;ERATE=0.0004;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58261963 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.986;LDAF=0.1613;AVGPOST=0.9953;RSQ=0.9861;ERATE=0.0007;THETA=0.0002;AC=349;AN=2184 GT:DS:GL:BD 0.15979853 0 1 58261975 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.542;LDAF=0.0206;AVGPOST=0.9736;RSQ=0.4646;ERATE=0.0051;THETA=0.0002;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58261995 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.541;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6628;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58262178 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0047;AVGPOST=0.9972;RSQ=0.7588;ERATE=0.0005;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58262223 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8515;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58262226 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0149;AVGPOST=0.9995;RSQ=0.9833;ERATE=0.0003;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58262229 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.958;LDAF=0.0281;AVGPOST=0.9921;RSQ=0.8935;ERATE=0.0017;THETA=0.0003;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 58262229 rs57299540 AATAATC A 9684 PASS INDEL;BAVGPOST=0.992;BRSQ=0.959;LDAF=0.0664;AVGPOST=0.9920;RSQ=0.9610;ERATE=0.0006;THETA=0.0002;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 58262308 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.965;LDAF=0.0290;AVGPOST=0.9986;RSQ=0.9797;ERATE=0.0003;THETA=0.0003;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 58262315 . AGGCTGT A 2788 PASS INDEL;BAVGPOST=0.995;BRSQ=0.923;LDAF=0.0304;AVGPOST=0.9955;RSQ=0.9395;ERATE=0.0004;THETA=0.0002;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 58262331 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.675;LDAF=0.0039;AVGPOST=0.9966;RSQ=0.7185;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58262353 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0157;AVGPOST=0.9994;RSQ=0.9829;ERATE=0.0004;THETA=0.0002;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58262522 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9996;RSQ=0.9298;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58262752 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.5029;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58262753 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=1.0000;RSQ=0.9941;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58262773 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58262854 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0062;AVGPOST=0.9994;RSQ=0.9520;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58263104 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58263118 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1600;AVGPOST=0.9989;RSQ=0.9968;ERATE=0.0003;THETA=0.0006;AC=349;AN=2184 GT:DS:GL:BD 0.15979853 0 1 58263323 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0034;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58263538 . G GT 14388 PASS INDEL;BAVGPOST=0.968;BRSQ=0.925;LDAF=0.7334;AVGPOST=0.9410;RSQ=0.8886;ERATE=0.0186;THETA=0.0003;AC=1616;AN=2184 GT:DS:GL:BD 0.73992676 1 1 58263539 rs11430324 T TA 103774 PASS INDEL;BAVGPOST=0.991;BRSQ=0.978;LDAF=0.7664;AVGPOST=0.9956;RSQ=0.9901;ERATE=0.0004;THETA=0.0002;AC=1672;AN=2184 GT:DS:GL:BD 0.76556778 1 1 58263612 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.713;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7770;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58263621 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0568;AVGPOST=0.9997;RSQ=0.9978;ERATE=0.0003;THETA=0.0003;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 58263671 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58263767 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3655;AVGPOST=0.9981;RSQ=0.9964;ERATE=0.0005;THETA=0.0004;AC=800;AN=2184 GT:DS:GL:BD 0.36630037 0 1 58263787 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0026;AVGPOST=0.9992;RSQ=0.8676;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58263822 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58263902 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58263941 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58264053 . CAG C 70 PASS INDEL;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0035;AVGPOST=0.9971;RSQ=0.6581;ERATE=0.0006;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58264068 . CAA C 1005 PASS INDEL;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0099;AVGPOST=0.9991;RSQ=0.9588;ERATE=0.0004;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58264121 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0023;AVGPOST=0.9986;RSQ=0.8020;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58264185 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8987;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58264268 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0701;AVGPOST=0.9995;RSQ=0.9966;ERATE=0.0003;THETA=0.0004;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 58264323 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.641;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6947;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58264508 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9905;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58264540 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.806;LDAF=0.0036;AVGPOST=0.9990;RSQ=0.8923;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58264575 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.927;LDAF=0.0116;AVGPOST=0.9985;RSQ=0.9558;ERATE=0.0004;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 58264637 . T TCATG 343 PASS INDEL;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7592;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58264789 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.835;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6473;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58264791 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0066;AVGPOST=0.9978;RSQ=0.8654;ERATE=0.0003;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58264792 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0072;AVGPOST=0.9987;RSQ=0.9188;ERATE=0.0003;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58264877 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7459;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58264878 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.7522;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58264945 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0027;AVGPOST=0.9980;RSQ=0.7118;ERATE=0.0007;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58265166 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0075;AVGPOST=0.9978;RSQ=0.8935;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58265256 . CT C 338 PASS INDEL;BAVGPOST=0.881;BRSQ=0.394;LDAF=0.1456;AVGPOST=0.8330;RSQ=0.4671;ERATE=0.0201;THETA=0.0004;AC=211;AN=2184 GT:DS:GL:BD 0.09661172 0 1 58265352 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.991;LDAF=0.5211;AVGPOST=0.9968;RSQ=0.9952;ERATE=0.0004;THETA=0.0004;AC=1138;AN=2184 GT:DS:GL:BD 0.52106225 1 1 58265353 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5736;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58265406 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.847;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8884;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58265437 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.819;LDAF=0.0071;AVGPOST=0.9971;RSQ=0.8310;ERATE=0.0006;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58265454 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0029;AVGPOST=0.9987;RSQ=0.8083;ERATE=0.0005;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58265579 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9824;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58265651 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0035;AVGPOST=0.9993;RSQ=0.9198;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58265704 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0717;AVGPOST=0.9995;RSQ=0.9980;ERATE=0.0003;THETA=0.0005;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 58265769 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6902;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58265851 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.893;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9489;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58265869 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5980;AVGPOST=0.9988;RSQ=0.9979;ERATE=0.0003;THETA=0.0002;AC=1306;AN=2184 GT:DS:GL:BD 0.59798533 1 1 58265911 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0578;AVGPOST=0.9986;RSQ=0.9923;ERATE=0.0004;THETA=0.0002;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 58265984 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.7002;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58266119 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58266160 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0041;AVGPOST=0.9990;RSQ=0.9141;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58266231 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58266460 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58266474 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58266497 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58266502 . CT C 6 PASS INDEL;BAVGPOST=0.999;BRSQ=0.653;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4523;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58266584 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58266618 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58266765 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0035;AVGPOST=0.9966;RSQ=0.6352;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58266827 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.9988;AVGPOST=0.9994;RSQ=0.7573;ERATE=0.0006;THETA=0.0002;AC=2182;AN=2184 GT:DS:GL:BD 0.99908423 1 1 58266854 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.9060;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58267046 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58267112 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0040;AVGPOST=0.9985;RSQ=0.8402;ERATE=0.0005;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58267152 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0019;AVGPOST=0.9974;RSQ=0.4839;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58267153 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0570;AVGPOST=0.9990;RSQ=0.9938;ERATE=0.0004;THETA=0.0002;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 58267169 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9451;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58267217 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.753;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.7059;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58267219 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1527;AVGPOST=0.9988;RSQ=0.9962;ERATE=0.0005;THETA=0.0007;AC=331;AN=2184 GT:DS:GL:BD 0.15155677 0 1 58267233 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.853;LDAF=0.0043;AVGPOST=0.9978;RSQ=0.7980;ERATE=0.0005;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58267332 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0159;AVGPOST=0.9993;RSQ=0.9799;ERATE=0.0003;THETA=0.0006;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58267355 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.570;LDAF=0.0038;AVGPOST=0.9973;RSQ=0.7367;ERATE=0.0005;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58267531 . TG T 202 PASS INDEL;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58267540 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.989;LDAF=0.1591;AVGPOST=0.9981;RSQ=0.9942;ERATE=0.0004;THETA=0.0003;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 58267577 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0025;AVGPOST=0.9989;RSQ=0.8081;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58267583 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.855;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7496;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58267660 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0018;AVGPOST=0.9997;RSQ=0.9471;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58267833 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0069;AVGPOST=0.9996;RSQ=0.9753;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58267853 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1596;AVGPOST=0.9997;RSQ=0.9989;ERATE=0.0003;THETA=0.0004;AC=348;AN=2184 GT:DS:GL:BD 0.15934066 0 1 58267860 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6494;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58267934 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7713;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58267990 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1527;AVGPOST=0.9997;RSQ=0.9991;ERATE=0.0003;THETA=0.0007;AC=331;AN=2184 GT:DS:GL:BD 0.15155677 0 1 58268031 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9258;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58268058 . T TG 240 PASS INDEL;BAVGPOST=0.998;BRSQ=0.767;LDAF=0.0043;AVGPOST=0.9970;RSQ=0.7300;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58268177 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1370;AVGPOST=0.9996;RSQ=0.9986;ERATE=0.0003;THETA=0.0003;AC=297;AN=2184 GT:DS:GL:BD 0.13598901 0 1 58268179 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8169;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58268231 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3629;AVGPOST=0.9980;RSQ=0.9967;ERATE=0.0004;THETA=0.0002;AC=793;AN=2184 GT:DS:GL:BD 0.36309522 0 1 58268240 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58268283 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6646;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58268361 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6838;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58268455 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9997;RSQ=0.9538;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58268513 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1536;AVGPOST=0.9992;RSQ=0.9975;ERATE=0.0003;THETA=0.0003;AC=333;AN=2184 GT:DS:GL:BD 0.15247253 0 1 58268579 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7215;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58268614 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9687;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58268732 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0583;AVGPOST=0.9976;RSQ=0.9864;ERATE=0.0004;THETA=0.0007;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 58268818 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5552;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58268824 . G GA 202 PASS INDEL;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0053;AVGPOST=0.9949;RSQ=0.6515;ERATE=0.0007;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58268837 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.664;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58268921 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3622;AVGPOST=0.9984;RSQ=0.9973;ERATE=0.0004;THETA=0.0018;AC=792;AN=2184 GT:DS:GL:BD 0.36263737 0 1 58269042 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8394;AVGPOST=0.9980;RSQ=0.9941;ERATE=0.0005;THETA=0.0005;AC=1834;AN=2184 GT:DS:GL:BD 0.83974361 1 1 58269104 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1373;AVGPOST=0.9980;RSQ=0.9942;ERATE=0.0003;THETA=0.0008;AC=297;AN=2184 GT:DS:GL:BD 0.13598901 0 1 58269133 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9602;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58269143 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5833;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58269315 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0197;AVGPOST=0.9992;RSQ=0.9817;ERATE=0.0004;THETA=0.0006;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 58269469 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58269502 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0063;AVGPOST=0.9992;RSQ=0.9446;ERATE=0.0004;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58269754 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0148;AVGPOST=0.9997;RSQ=0.9903;ERATE=0.0003;THETA=0.0002;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58270011 MERGED_DEL_2_3686 A . . SV;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6423;ERATE=0.0003;THETA=0.0003;CIEND=-17,33;CIPOS=-18,19;END=58273078;SOURCE=GenomeStrip_58270011_58273078;SVTYPE=DEL;AC=1;AN=21 GT:DS:GL:BD 0.00045788 0 1 58270068 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9695;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58270148 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9824;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58270159 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0036;AVGPOST=0.9995;RSQ=0.9433;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58270434 . GAA G 81 PASS INDEL;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0018;AVGPOST=0.9978;RSQ=0.5520;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58270512 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.694;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5462;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58270657 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9654;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58270675 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7939;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58271009 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1544;AVGPOST=0.9989;RSQ=0.9965;ERATE=0.0004;THETA=0.0004;AC=334;AN=2184 GT:DS:GL:BD 0.15293041 0 1 58271215 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6557;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58271285 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1514;AVGPOST=0.9995;RSQ=0.9982;ERATE=0.0003;THETA=0.0003;AC=328;AN=2184 GT:DS:GL:BD 0.15018316 0 1 58271338 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0071;AVGPOST=0.9991;RSQ=0.9440;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58271414 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0096;AVGPOST=0.9999;RSQ=0.9954;ERATE=0.0003;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58271512 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0084;AVGPOST=0.9995;RSQ=0.9710;ERATE=0.0004;THETA=0.0018;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58271542 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8025;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58271723 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.850;LDAF=0.0043;AVGPOST=0.9986;RSQ=0.8885;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58271871 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0893;AVGPOST=0.9963;RSQ=0.9849;ERATE=0.0003;THETA=0.0052;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 58271917 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9799;ERATE=0.0004;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58272000 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0003;THETA=0.0103;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58272079 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58272157 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6140;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58272200 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0125;AVGPOST=0.9994;RSQ=0.9792;ERATE=0.0003;THETA=0.0019;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58272236 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7755;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58272324 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.936;LDAF=0.0094;AVGPOST=0.9986;RSQ=0.9510;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58272361 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9580;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58272390 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0077;AVGPOST=0.9998;RSQ=0.9894;ERATE=0.0003;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58272490 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8381;ERATE=0.0004;THETA=0.0060;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58272497 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8276;ERATE=0.0003;THETA=0.0031;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58272543 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0134;AVGPOST=0.9984;RSQ=0.9549;ERATE=0.0003;THETA=0.0063;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 58272683 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0034;AVGPOST=0.9974;RSQ=0.7201;ERATE=0.0003;THETA=0.0031;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58272916 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1197;AVGPOST=0.9984;RSQ=0.9944;ERATE=0.0004;THETA=0.0014;AC=259;AN=2184 GT:DS:GL:BD 0.11858974 0 1 58272997 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9342;ERATE=0.0004;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58272999 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0165;AVGPOST=0.9988;RSQ=0.9663;ERATE=0.0006;THETA=0.0059;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 58273046 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.1191;AVGPOST=0.9987;RSQ=0.9956;ERATE=0.0004;THETA=0.0032;AC=258;AN=2184 GT:DS:GL:BD 0.11813187 0 1 58273064 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.973;LDAF=0.0545;AVGPOST=0.9951;RSQ=0.9706;ERATE=0.0006;THETA=0.0003;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 58273158 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1267;AVGPOST=0.9984;RSQ=0.9946;ERATE=0.0003;THETA=0.0022;AC=273;AN=2184 GT:DS:GL:BD 0.12500000 0 1 58273184 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.760;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8923;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58273270 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.942;LDAF=0.0120;AVGPOST=0.9979;RSQ=0.9290;ERATE=0.0008;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 58273325 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0187;AVGPOST=0.9989;RSQ=0.9753;ERATE=0.0004;THETA=0.0037;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 58273341 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.720;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.4767;ERATE=0.0006;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58273360 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0090;AVGPOST=0.9984;RSQ=0.9378;ERATE=0.0005;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58273441 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0036;AVGPOST=0.9993;RSQ=0.9083;ERATE=0.0003;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58273604 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9460;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58273610 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=0.9989;RSQ=0.9260;ERATE=0.0004;THETA=0.0011;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58273613 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6856;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58273673 . TA T 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.7563;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58273678 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0851;AVGPOST=0.9994;RSQ=0.9964;ERATE=0.0003;THETA=0.0004;AC=186;AN=2184 GT:DS:GL:BD 0.08516484 0 1 58273733 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9073;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58273734 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0046;AVGPOST=0.9988;RSQ=0.9051;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58273806 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6347;ERATE=0.0003;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58273809 . CCT C 45 PASS INDEL;BAVGPOST=0.993;BRSQ=0.628;LDAF=0.0176;AVGPOST=0.9812;RSQ=0.5709;ERATE=0.0057;THETA=0.0007;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 58273810 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.862;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9185;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58273842 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0865;AVGPOST=0.9988;RSQ=0.9932;ERATE=0.0004;THETA=0.0004;AC=189;AN=2184 GT:DS:GL:BD 0.08653846 0 1 58273900 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.9086;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58273977 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9244;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58273989 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0037;AVGPOST=0.9987;RSQ=0.8651;ERATE=0.0009;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58274164 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8807;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58274431 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0052;AVGPOST=0.9971;RSQ=0.7589;ERATE=0.0010;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58274475 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4451;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58274527 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0137;AVGPOST=0.9997;RSQ=0.9913;ERATE=0.0003;THETA=0.0016;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58274555 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8214;ERATE=0.0003;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58274572 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2363;AVGPOST=0.9972;RSQ=0.9934;ERATE=0.0006;THETA=0.0007;AC=515;AN=2184 GT:DS:GL:BD 0.23580585 0 1 58274575 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6430;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58274710 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0093;AVGPOST=0.9997;RSQ=0.9834;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58275144 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.909;LDAF=0.0235;AVGPOST=0.9951;RSQ=0.9234;ERATE=0.0004;THETA=0.0006;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 58275187 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0212;AVGPOST=0.9988;RSQ=0.9749;ERATE=0.0004;THETA=0.0003;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 58275273 . CTG C 26 PASS INDEL;BAVGPOST=0.985;BRSQ=0.119;LDAF=0.0723;AVGPOST=0.8882;RSQ=0.3571;ERATE=0.0063;THETA=0.0005;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 58275331 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.687;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58275521 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=0.9997;RSQ=0.9437;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58275537 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58275738 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0770;AVGPOST=0.9983;RSQ=0.9906;ERATE=0.0004;THETA=0.0006;AC=169;AN=2184 GT:DS:GL:BD 0.07738096 0 1 58275860 . GA G 1158 PASS INDEL;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0115;AVGPOST=0.9979;RSQ=0.9389;ERATE=0.0004;THETA=0.0022;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 58275871 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5553;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58276001 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7659;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58276045 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58276125 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58276142 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0066;AVGPOST=0.9996;RSQ=0.9764;ERATE=0.0004;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58276162 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58276343 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58276452 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58276488 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58276635 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.931;LDAF=0.0182;AVGPOST=0.9958;RSQ=0.9098;ERATE=0.0003;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 58276642 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5118;AVGPOST=0.9964;RSQ=0.9938;ERATE=0.0004;THETA=0.0002;AC=1119;AN=2184 GT:DS:GL:BD 0.51236266 1 1 58276684 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0031;AVGPOST=0.9981;RSQ=0.7611;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58276802 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.8054;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58276940 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1255;AVGPOST=0.9986;RSQ=0.9949;ERATE=0.0004;THETA=0.0005;AC=274;AN=2184 GT:DS:GL:BD 0.12545788 0 1 58276964 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58276979 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0130;AVGPOST=0.9992;RSQ=0.9762;ERATE=0.0003;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 58277179 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3817;AVGPOST=0.9956;RSQ=0.9934;ERATE=0.0004;THETA=0.0002;AC=832;AN=2184 GT:DS:GL:BD 0.38095239 0 1 58277257 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2348;AVGPOST=0.9993;RSQ=0.9983;ERATE=0.0003;THETA=0.0008;AC=513;AN=2184 GT:DS:GL:BD 0.23489010 0 1 58277375 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.893;LDAF=0.0056;AVGPOST=0.9984;RSQ=0.8839;ERATE=0.0004;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58277544 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0142;AVGPOST=0.9991;RSQ=0.9809;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58277595 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58277607 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0559;AVGPOST=0.9982;RSQ=0.9884;ERATE=0.0013;THETA=0.0003;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 58277639 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8061;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58277648 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0033;AVGPOST=0.9988;RSQ=0.8704;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58277807 . A AC 18 PASS INDEL;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4270;ERATE=0.0004;THETA=0.0049;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58277827 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.805;LDAF=0.0076;AVGPOST=0.9962;RSQ=0.8118;ERATE=0.0004;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58277836 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6295;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58277839 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0193;AVGPOST=0.9988;RSQ=0.9744;ERATE=0.0004;THETA=0.0004;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 58278015 . G GA 92 PASS INDEL;BAVGPOST=0.998;BRSQ=0.601;LDAF=0.0042;AVGPOST=0.9939;RSQ=0.4302;ERATE=0.0015;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58278052 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.941;LDAF=0.9619;AVGPOST=0.9957;RSQ=0.9587;ERATE=0.0004;THETA=0.0002;AC=2102;AN=2184 GT:DS:GL:BD 0.96245420 1 1 58278151 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0031;AVGPOST=0.9971;RSQ=0.6875;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58278248 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58278336 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7679;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58278358 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0037;AVGPOST=0.9997;RSQ=0.9603;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58278635 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.942;LDAF=0.0382;AVGPOST=0.9943;RSQ=0.9433;ERATE=0.0003;THETA=0.0003;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 58278667 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9626;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58278695 . TTA T 321 PASS INDEL;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0018;AVGPOST=0.9988;RSQ=0.7821;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58278738 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7607;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58278774 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0106;AVGPOST=0.9995;RSQ=0.9795;ERATE=0.0003;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58278958 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0069;AVGPOST=0.9980;RSQ=0.8823;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58279063 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0092;AVGPOST=0.9998;RSQ=0.9879;ERATE=0.0003;THETA=0.0009;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58279079 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6343;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58279094 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9141;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58279101 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.974;LDAF=0.0475;AVGPOST=0.9989;RSQ=0.9899;ERATE=0.0003;THETA=0.0008;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 58279102 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.974;LDAF=0.0476;AVGPOST=0.9986;RSQ=0.9876;ERATE=0.0004;THETA=0.0002;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 58279107 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3872;AVGPOST=0.9971;RSQ=0.9949;ERATE=0.0005;THETA=0.0004;AC=846;AN=2184 GT:DS:GL:BD 0.38736263 0 1 58279117 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0148;AVGPOST=0.9996;RSQ=0.9896;ERATE=0.0003;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58279173 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58279226 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0038;AVGPOST=0.9985;RSQ=0.8344;ERATE=0.0015;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58279315 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6616;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58279319 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.628;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58279484 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6265;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58279771 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.835;LDAF=0.0082;AVGPOST=0.9981;RSQ=0.9049;ERATE=0.0005;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58279999 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6694;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58280033 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58280109 . G GA 217 PASS INDEL;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7946;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58280174 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9900;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58280243 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9741;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58280295 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7811;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58280380 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2803;AVGPOST=0.9989;RSQ=0.9978;ERATE=0.0003;THETA=0.0004;AC=612;AN=2184 GT:DS:GL:BD 0.28021979 0 1 58280461 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.6955;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58280479 . CTG C 632 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9990;RSQ=0.8996;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58280490 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4582;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58280509 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2786;AVGPOST=0.9983;RSQ=0.9966;ERATE=0.0004;THETA=0.0002;AC=606;AN=2184 GT:DS:GL:BD 0.27747253 0 1 58280515 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6055;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58280532 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0050;AVGPOST=0.9981;RSQ=0.8567;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58280542 . CCT C 176 PASS INDEL;BAVGPOST=0.999;BRSQ=0.757;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.6895;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58280622 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2783;AVGPOST=0.9991;RSQ=0.9981;ERATE=0.0004;THETA=0.0005;AC=606;AN=2184 GT:DS:GL:BD 0.27747253 0 1 58280693 . T TA 187 PASS INDEL;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0024;AVGPOST=0.9974;RSQ=0.6079;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58280733 . G GT 30 PASS INDEL;BAVGPOST=0.997;BRSQ=0.597;LDAF=0.0086;AVGPOST=0.9909;RSQ=0.6071;ERATE=0.0020;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58280738 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0103;AVGPOST=0.9975;RSQ=0.9040;ERATE=0.0006;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58280742 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.767;LDAF=0.0140;AVGPOST=0.9840;RSQ=0.5659;ERATE=0.0053;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58280755 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.785;LDAF=0.0041;AVGPOST=0.9952;RSQ=0.5996;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58280758 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0146;AVGPOST=0.9996;RSQ=0.9871;ERATE=0.0004;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58280890 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.870;LDAF=0.0144;AVGPOST=0.9962;RSQ=0.8928;ERATE=0.0005;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 58280933 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.950;BRSQ=0.892;LDAF=0.3045;AVGPOST=0.9509;RSQ=0.9129;ERATE=0.0104;THETA=0.0002;AC=677;AN=2184 GT:DS:GL:BD 0.30998167 0 1 58281020 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.974;LDAF=0.3168;AVGPOST=0.9927;RSQ=0.9860;ERATE=0.0018;THETA=0.0004;AC=694;AN=2184 GT:DS:GL:BD 0.31776556 0 1 58281182 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0118;AVGPOST=0.9980;RSQ=0.9430;ERATE=0.0003;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58281188 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5142;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58281264 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2793;AVGPOST=0.9969;RSQ=0.9944;ERATE=0.0004;THETA=0.0003;AC=608;AN=2184 GT:DS:GL:BD 0.27838829 0 1 58281268 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0147;AVGPOST=0.9997;RSQ=0.9900;ERATE=0.0003;THETA=0.0007;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58281425 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2809;AVGPOST=0.9976;RSQ=0.9953;ERATE=0.0007;THETA=0.0003;AC=610;AN=2184 GT:DS:GL:BD 0.27930403 0 1 58281426 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0146;AVGPOST=0.9999;RSQ=0.9971;ERATE=0.0003;THETA=0.0002;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58281472 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58281562 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58281564 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.893;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9358;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58281677 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0107;AVGPOST=0.9996;RSQ=0.9830;ERATE=0.0003;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58281694 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6919;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58281735 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5994;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58281894 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7094;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58281972 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58282044 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2506;AVGPOST=0.9974;RSQ=0.9951;ERATE=0.0004;THETA=0.0005;AC=545;AN=2184 GT:DS:GL:BD 0.24954212 0 1 58282047 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0053;AVGPOST=0.9994;RSQ=0.9620;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58282099 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0021;AVGPOST=0.9979;RSQ=0.6541;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58282166 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2810;AVGPOST=0.9995;RSQ=0.9990;ERATE=0.0003;THETA=0.0003;AC=612;AN=2184 GT:DS:GL:BD 0.28021979 0 1 58282215 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58282222 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7238;ERATE=0.0003;THETA=0.0040;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58282249 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.8384;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58282351 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0088;AVGPOST=0.9973;RSQ=0.8866;ERATE=0.0007;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58282393 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9695;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58282399 . ACTT A 221 PASS INDEL;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.7334;ERATE=0.0003;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58282439 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.926;LDAF=0.0105;AVGPOST=0.9980;RSQ=0.9273;ERATE=0.0003;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58282521 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0060;AVGPOST=0.9985;RSQ=0.8912;ERATE=0.0004;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58282548 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0011;AVGPOST=0.9984;RSQ=0.4592;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58282739 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2917;AVGPOST=0.9979;RSQ=0.9962;ERATE=0.0003;THETA=0.0004;AC=635;AN=2184 GT:DS:GL:BD 0.29075092 0 1 58282789 rs10639735 G GAATA 76211 PASS INDEL;BAVGPOST=0.973;BRSQ=0.948;LDAF=0.3803;AVGPOST=0.9875;RSQ=0.9794;ERATE=0.0023;THETA=0.0005;AC=831;AN=2184 GT:DS:GL:BD 0.38049451 0 1 58282791 . A ATAAG 21388 PASS INDEL;BAVGPOST=0.965;BRSQ=0.933;LDAF=0.3627;AVGPOST=0.9493;RSQ=0.9177;ERATE=0.0151;THETA=0.0004;AC=793;AN=2184 GT:DS:GL:BD 0.36309522 0 1 58282919 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0156;AVGPOST=0.9998;RSQ=0.9946;ERATE=0.0003;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58282953 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0408;AVGPOST=0.9989;RSQ=0.9902;ERATE=0.0003;THETA=0.0007;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 58283006 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58283039 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58283066 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5771;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58283118 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2832;AVGPOST=0.9968;RSQ=0.9939;ERATE=0.0009;THETA=0.0003;AC=617;AN=2184 GT:DS:GL:BD 0.28250915 0 1 58283145 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9991;RSQ=0.8918;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58283276 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6892;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58283280 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.913;LDAF=0.0052;AVGPOST=0.9972;RSQ=0.8406;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58283443 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0013;AVGPOST=0.9981;RSQ=0.5229;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58283445 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6293;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58283612 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8299;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58283618 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.988;LDAF=0.6699;AVGPOST=0.9936;RSQ=0.9890;ERATE=0.0009;THETA=0.0003;AC=1462;AN=2184 GT:DS:GL:BD 0.66941392 1 1 58283676 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.824;LDAF=0.0044;AVGPOST=0.9992;RSQ=0.9154;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58283692 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.659;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6875;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58283750 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.6141;AVGPOST=0.9970;RSQ=0.9950;ERATE=0.0005;THETA=0.0041;AC=1338;AN=2184 GT:DS:GL:BD 0.61263734 1 1 58283826 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.686;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8439;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58283994 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58284010 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8614;ERATE=0.0013;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58284170 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5760;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58284209 . TA T 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.671;LDAF=0.0022;AVGPOST=0.9966;RSQ=0.3630;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58284236 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.2812;AVGPOST=0.9974;RSQ=0.9951;ERATE=0.0005;THETA=0.0005;AC=614;AN=2184 GT:DS:GL:BD 0.28113553 0 1 58284259 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8108;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58284283 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7403;ERATE=0.0004;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58284462 . A ATG 69 PASS INDEL;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0038;AVGPOST=0.9966;RSQ=0.5997;ERATE=0.0007;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58284508 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.2858;AVGPOST=0.9983;RSQ=0.9963;ERATE=0.0005;THETA=0.0002;AC=622;AN=2184 GT:DS:GL:BD 0.28479853 0 1 58284516 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0096;AVGPOST=0.9980;RSQ=0.9175;ERATE=0.0005;THETA=0.0022;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58284660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.834;LDAF=0.0029;AVGPOST=0.9982;RSQ=0.7422;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58284672 . A AT 504 PASS INDEL;BAVGPOST=0.876;BRSQ=0.449;LDAF=0.1433;AVGPOST=0.8707;RSQ=0.5884;ERATE=0.0176;THETA=0.0001;AC=245;AN=2184 GT:DS:GL:BD 0.11217949 0 1 58284679 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.696;LDAF=0.0048;AVGPOST=0.9967;RSQ=0.7472;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58284680 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.988;LDAF=0.2907;AVGPOST=0.9905;RSQ=0.9831;ERATE=0.0007;THETA=0.0021;AC=629;AN=2184 GT:DS:GL:BD 0.28800365 0 1 58284698 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.976;LDAF=0.0413;AVGPOST=0.9980;RSQ=0.9826;ERATE=0.0003;THETA=0.0002;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 58284880 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7298;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58284924 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2927;AVGPOST=0.9986;RSQ=0.9971;ERATE=0.0004;THETA=0.0002;AC=637;AN=2184 GT:DS:GL:BD 0.29166666 0 1 58284926 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0010;AVGPOST=0.9987;RSQ=0.4979;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58285027 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2763;AVGPOST=0.9983;RSQ=0.9964;ERATE=0.0005;THETA=0.0002;AC=601;AN=2184 GT:DS:GL:BD 0.27518314 0 1 58285225 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6200;ERATE=0.0003;THETA=0.0054;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58285262 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.774;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7661;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58285289 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.985;LDAF=0.1607;AVGPOST=0.9931;RSQ=0.9800;ERATE=0.0005;THETA=0.0007;AC=349;AN=2184 GT:DS:GL:BD 0.15979853 0 1 58285358 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4548;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58285413 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2829;AVGPOST=0.9970;RSQ=0.9946;ERATE=0.0005;THETA=0.0004;AC=616;AN=2184 GT:DS:GL:BD 0.28205130 0 1 58285421 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0027;AVGPOST=0.9997;RSQ=0.9531;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58285425 . G GA 1893 PASS INDEL;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0126;AVGPOST=0.9979;RSQ=0.9315;ERATE=0.0005;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58285593 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2813;AVGPOST=0.9983;RSQ=0.9970;ERATE=0.0004;THETA=0.0002;AC=613;AN=2184 GT:DS:GL:BD 0.28067765 0 1 58285640 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0103;AVGPOST=0.9996;RSQ=0.9826;ERATE=0.0003;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58285652 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6901;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58285709 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9293;ERATE=0.0004;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58285787 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0803;AVGPOST=0.9990;RSQ=0.9941;ERATE=0.0003;THETA=0.0002;AC=175;AN=2184 GT:DS:GL:BD 0.08012821 0 1 58285845 . C CA 42 PASS INDEL;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5801;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58285850 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8236;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58285929 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0089;AVGPOST=0.9996;RSQ=0.9808;ERATE=0.0003;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58285947 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7505;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58286016 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0147;AVGPOST=0.9997;RSQ=0.9919;ERATE=0.0003;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58286256 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=0.9986;RSQ=0.8907;ERATE=0.0004;THETA=0.0033;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58286301 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0157;AVGPOST=0.9998;RSQ=0.9932;ERATE=0.0003;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58286423 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0113;AVGPOST=0.9989;RSQ=0.9640;ERATE=0.0004;THETA=0.0002;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58286486 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.8005;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58286508 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.991;LDAF=0.3483;AVGPOST=0.9972;RSQ=0.9951;ERATE=0.0006;THETA=0.0002;AC=760;AN=2184 GT:DS:GL:BD 0.34798536 0 1 58286554 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7424;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58286562 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6940;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58286795 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8987;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58286949 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58286973 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.8085;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58286974 . CATA C 84 PASS INDEL;BAVGPOST=0.994;BRSQ=0.619;LDAF=0.0192;AVGPOST=0.9767;RSQ=0.5164;ERATE=0.0057;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58286988 . TA T 242 PASS INDEL;BAVGPOST=0.998;BRSQ=0.749;LDAF=0.0037;AVGPOST=0.9987;RSQ=0.8640;ERATE=0.0005;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58286991 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0161;AVGPOST=0.9984;RSQ=0.9564;ERATE=0.0010;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58287091 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.811;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9293;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58287123 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0001;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58287206 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7324;ERATE=0.0006;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58287213 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0005;AVGPOST=0.9994;RSQ=0.5543;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58287224 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2828;AVGPOST=0.9980;RSQ=0.9956;ERATE=0.0008;THETA=0.0004;AC=616;AN=2184 GT:DS:GL:BD 0.28205130 0 1 58287279 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0059;AVGPOST=0.9990;RSQ=0.9415;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58287305 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0082;AVGPOST=0.9975;RSQ=0.8766;ERATE=0.0004;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58287430 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7199;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58287477 . A AT 2477 PASS INDEL;BAVGPOST=0.995;BRSQ=0.943;LDAF=0.0324;AVGPOST=0.9928;RSQ=0.9110;ERATE=0.0010;THETA=0.0003;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 58287494 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.757;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5650;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58287563 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8955;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58287613 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.739;LDAF=0.0046;AVGPOST=0.9976;RSQ=0.8328;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58287622 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6139;AVGPOST=0.9979;RSQ=0.9961;ERATE=0.0004;THETA=0.0004;AC=1340;AN=2184 GT:DS:GL:BD 0.61355311 1 1 58287638 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.731;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7837;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58287671 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8665;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58287750 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9997;RSQ=0.9473;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58287911 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.6622;AVGPOST=0.9953;RSQ=0.9926;ERATE=0.0005;THETA=0.0003;AC=1443;AN=2184 GT:DS:GL:BD 0.66071427 1 1 58288023 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.987;LDAF=0.1959;AVGPOST=0.9989;RSQ=0.9968;ERATE=0.0004;THETA=0.0002;AC=426;AN=2184 GT:DS:GL:BD 0.19505495 0 1 58288125 . C CTG 47 PASS INDEL;BAVGPOST=1.000;BRSQ=0.702;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6473;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58288209 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0088;AVGPOST=0.9997;RSQ=0.9850;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58288273 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6696;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58288291 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58288317 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1970;AVGPOST=0.9980;RSQ=0.9945;ERATE=0.0003;THETA=0.0004;AC=426;AN=2184 GT:DS:GL:BD 0.19505495 0 1 58288383 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0125;AVGPOST=0.9978;RSQ=0.9213;ERATE=0.0004;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 58288512 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6211;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58288536 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0023;AVGPOST=0.9984;RSQ=0.7016;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58288547 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.726;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6176;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58288552 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.6361;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58288635 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.977;LDAF=0.0364;AVGPOST=0.9982;RSQ=0.9810;ERATE=0.0003;THETA=0.0003;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 58288711 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0140;AVGPOST=0.9926;RSQ=0.7984;ERATE=0.0007;THETA=0.0002;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58288803 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.713;LDAF=0.0080;AVGPOST=0.9946;RSQ=0.7188;ERATE=0.0011;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58288845 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.955;BRSQ=0.915;LDAF=0.5847;AVGPOST=0.9569;RSQ=0.9299;ERATE=0.0056;THETA=0.0002;AC=1291;AN=2184 GT:DS:GL:BD 0.59111720 1 1 58288897 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0028;AVGPOST=0.9976;RSQ=0.6178;ERATE=0.0007;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58288946 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.650;LDAF=0.0050;AVGPOST=0.9928;RSQ=0.4280;ERATE=0.0020;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58288972 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.764;LDAF=0.0196;AVGPOST=0.9927;RSQ=0.8593;ERATE=0.0004;THETA=0.0002;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 58289096 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2784;AVGPOST=0.9987;RSQ=0.9975;ERATE=0.0004;THETA=0.0002;AC=605;AN=2184 GT:DS:GL:BD 0.27701464 0 1 58289195 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58289369 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58289527 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5948;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58289662 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8704;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58289874 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8802;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58290034 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0058;AVGPOST=0.9991;RSQ=0.9335;ERATE=0.0011;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58290088 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58290149 . TA T 1300 PASS INDEL;BAVGPOST=0.996;BRSQ=0.856;LDAF=0.0130;AVGPOST=0.9939;RSQ=0.8230;ERATE=0.0006;THETA=0.0002;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58290175 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0088;AVGPOST=0.9999;RSQ=0.9924;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58290196 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58290316 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7635;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58290332 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58290483 . CA C 134 PASS INDEL;BAVGPOST=0.998;BRSQ=0.856;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7494;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58290561 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6129;AVGPOST=0.9987;RSQ=0.9976;ERATE=0.0004;THETA=0.0005;AC=1338;AN=2184 GT:DS:GL:BD 0.61263734 1 1 58290624 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=1.0000;RSQ=0.9932;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58290772 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6120;AVGPOST=0.9979;RSQ=0.9962;ERATE=0.0004;THETA=0.0003;AC=1336;AN=2184 GT:DS:GL:BD 0.61172163 1 1 58290787 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0114;AVGPOST=1.0000;RSQ=0.9981;ERATE=0.0003;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 58290801 . AT A 21 PASS INDEL;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0020;AVGPOST=0.9976;RSQ=0.5237;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58290883 . AG A 2205 PASS INDEL;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0171;AVGPOST=0.9966;RSQ=0.9240;ERATE=0.0008;THETA=0.0006;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 58291073 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9497;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58291089 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0025;AVGPOST=0.9994;RSQ=0.8919;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58291212 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0010;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58291432 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0088;AVGPOST=0.9997;RSQ=0.9860;ERATE=0.0003;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58291558 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8452;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58291567 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6983;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58291585 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6856;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58291794 . CAG C 234 PASS INDEL;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.7153;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58291824 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0043;AVGPOST=0.9979;RSQ=0.8257;ERATE=0.0008;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58292007 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58292008 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0044;AVGPOST=0.9995;RSQ=0.9553;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58292031 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0431;AVGPOST=0.9989;RSQ=0.9926;ERATE=0.0003;THETA=0.0006;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 58292054 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0156;AVGPOST=0.9997;RSQ=0.9907;ERATE=0.0003;THETA=0.0002;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58292106 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6527;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58292322 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58292340 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0088;AVGPOST=0.9999;RSQ=0.9928;ERATE=0.0003;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58292345 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58292358 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0496;AVGPOST=0.9989;RSQ=0.9923;ERATE=0.0003;THETA=0.0004;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 58292481 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0036;AVGPOST=0.9993;RSQ=0.9180;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58292504 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.1434;AVGPOST=0.9961;RSQ=0.9877;ERATE=0.0003;THETA=0.0003;AC=311;AN=2184 GT:DS:GL:BD 0.14239927 0 1 58292621 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.6158;AVGPOST=0.9961;RSQ=0.9932;ERATE=0.0012;THETA=0.0003;AC=1344;AN=2184 GT:DS:GL:BD 0.61538464 1 1 58292669 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.713;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8448;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58292674 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0448;AVGPOST=0.9989;RSQ=0.9922;ERATE=0.0003;THETA=0.0005;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 58292693 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58292834 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.704;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6714;ERATE=0.0004;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58292927 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5852;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58293081 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58293114 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0502;AVGPOST=0.9995;RSQ=0.9955;ERATE=0.0003;THETA=0.0003;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 58293116 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2884;AVGPOST=0.9992;RSQ=0.9983;ERATE=0.0004;THETA=0.0004;AC=628;AN=2184 GT:DS:GL:BD 0.28754580 0 1 58293235 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2858;AVGPOST=0.9982;RSQ=0.9962;ERATE=0.0004;THETA=0.0008;AC=622;AN=2184 GT:DS:GL:BD 0.28479853 0 1 58293457 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0089;AVGPOST=0.9995;RSQ=0.9736;ERATE=0.0004;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58293530 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6527;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58293649 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0083;AVGPOST=0.9984;RSQ=0.9205;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58293678 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.758;LDAF=0.0097;AVGPOST=0.9942;RSQ=0.7844;ERATE=0.0006;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58293767 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0511;AVGPOST=0.9973;RSQ=0.9800;ERATE=0.0005;THETA=0.0004;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 58293869 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0042;AVGPOST=0.9979;RSQ=0.8062;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58293870 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0179;AVGPOST=0.9948;RSQ=0.9000;ERATE=0.0003;THETA=0.0002;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 58293974 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6355;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58294084 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58294115 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5775;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58294290 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6701;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58294463 . A AT 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0030;AVGPOST=0.9967;RSQ=0.5287;ERATE=0.0007;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58294538 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6151;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58294552 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0091;AVGPOST=0.9990;RSQ=0.9475;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58294640 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.7237;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58294710 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.6139;AVGPOST=0.9966;RSQ=0.9938;ERATE=0.0007;THETA=0.0004;AC=1340;AN=2184 GT:DS:GL:BD 0.61355311 1 1 58294729 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4434;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58294764 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.6086;AVGPOST=0.9861;RSQ=0.9773;ERATE=0.0035;THETA=0.0004;AC=1329;AN=2184 GT:DS:GL:BD 0.60851645 1 1 58294765 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0160;AVGPOST=0.9981;RSQ=0.9439;ERATE=0.0005;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58294768 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7605;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58294788 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5455;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58294846 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0107;AVGPOST=0.9993;RSQ=0.9713;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58294939 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7651;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58295014 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.744;LDAF=0.0040;AVGPOST=0.9984;RSQ=0.8482;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58295060 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0089;AVGPOST=0.9996;RSQ=0.9779;ERATE=0.0003;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58295080 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.674;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6596;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58295212 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5711;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58295325 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58295421 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5553;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58295457 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0087;AVGPOST=0.9999;RSQ=0.9949;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58295509 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0017;AVGPOST=0.9987;RSQ=0.7082;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58295623 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58295692 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58295694 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58295697 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0162;AVGPOST=0.9981;RSQ=0.9592;ERATE=0.0004;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 58295896 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6904;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58295927 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7598;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58295965 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8188;ERATE=0.0011;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58295986 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0054;AVGPOST=0.9993;RSQ=0.9512;ERATE=0.0004;THETA=0.0001;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58296063 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2253;AVGPOST=0.9981;RSQ=0.9956;ERATE=0.0004;THETA=0.0002;AC=491;AN=2184 GT:DS:GL:BD 0.22481684 0 1 58296068 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0115;AVGPOST=0.9990;RSQ=0.9609;ERATE=0.0008;THETA=0.0002;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58296149 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0049;AVGPOST=0.9984;RSQ=0.8561;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58296184 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7390;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58296262 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.986;LDAF=0.2855;AVGPOST=0.9878;RSQ=0.9793;ERATE=0.0019;THETA=0.0003;AC=619;AN=2184 GT:DS:GL:BD 0.28342491 0 1 58296372 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6749;ERATE=0.0008;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58296616 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9483;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58296780 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0019;AVGPOST=0.9968;RSQ=0.3309;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58296875 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0038;AVGPOST=0.9984;RSQ=0.8067;ERATE=0.0005;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58296881 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.3368;AVGPOST=0.9946;RSQ=0.9913;ERATE=0.0005;THETA=0.0003;AC=731;AN=2184 GT:DS:GL:BD 0.33470696 0 1 58296910 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.987;LDAF=0.6733;AVGPOST=0.9950;RSQ=0.9917;ERATE=0.0004;THETA=0.0004;AC=1470;AN=2184 GT:DS:GL:BD 0.67307693 1 1 58296933 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58297018 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4989;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58297023 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7446;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58297045 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2893;AVGPOST=0.9986;RSQ=0.9971;ERATE=0.0006;THETA=0.0002;AC=630;AN=2184 GT:DS:GL:BD 0.28846154 0 1 58297107 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58297146 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0090;AVGPOST=0.9995;RSQ=0.9736;ERATE=0.0003;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58297190 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0043;AVGPOST=0.9979;RSQ=0.8002;ERATE=0.0005;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58297348 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.6083;AVGPOST=0.9979;RSQ=0.9962;ERATE=0.0005;THETA=0.0003;AC=1327;AN=2184 GT:DS:GL:BD 0.60760075 1 1 58297399 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2056;AVGPOST=0.9979;RSQ=0.9940;ERATE=0.0004;THETA=0.0004;AC=447;AN=2184 GT:DS:GL:BD 0.20467032 0 1 58297664 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6550;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58297693 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58297700 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.7006;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58297711 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58297832 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0061;AVGPOST=0.9986;RSQ=0.9168;ERATE=0.0005;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58297887 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2259;AVGPOST=0.9976;RSQ=0.9950;ERATE=0.0003;THETA=0.0003;AC=493;AN=2184 GT:DS:GL:BD 0.22573259 0 1 58297953 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0364;AVGPOST=0.9980;RSQ=0.9830;ERATE=0.0003;THETA=0.0005;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 58297990 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8303;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58298016 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58298019 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7257;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58298201 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0030;AVGPOST=0.9993;RSQ=0.9151;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58298230 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8407;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58298469 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0153;AVGPOST=0.9995;RSQ=0.9864;ERATE=0.0003;THETA=0.0005;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58298524 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0097;AVGPOST=0.9987;RSQ=0.9478;ERATE=0.0003;THETA=0.0030;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58298759 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0033;AVGPOST=0.9960;RSQ=0.5009;ERATE=0.0008;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58298810 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0026;AVGPOST=0.9980;RSQ=0.7111;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58299025 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0408;AVGPOST=0.9988;RSQ=0.9884;ERATE=0.0004;THETA=0.0003;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 58299059 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0089;AVGPOST=0.9995;RSQ=0.9736;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58299158 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.517;LDAF=0.0008;AVGPOST=0.9989;RSQ=0.4491;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58299177 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4441;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58299425 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8818;ERATE=0.0006;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58299542 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0087;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58299679 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9539;ERATE=0.0005;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58299749 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58299858 . TCA T 57 PASS INDEL;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5294;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58300097 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.973;LDAF=0.0476;AVGPOST=0.9962;RSQ=0.9688;ERATE=0.0008;THETA=0.0005;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 58300144 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0045;AVGPOST=0.9986;RSQ=0.8983;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58300297 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6758;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58300307 . T TTA 16 PASS INDEL;BAVGPOST=0.998;BRSQ=0.533;LDAF=0.0040;AVGPOST=0.9933;RSQ=0.3459;ERATE=0.0009;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58300424 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0103;AVGPOST=0.9995;RSQ=0.9769;ERATE=0.0004;THETA=0.0014;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58300477 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.866;LDAF=0.0093;AVGPOST=0.9972;RSQ=0.8831;ERATE=0.0004;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58300536 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.5116;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58300565 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0068;AVGPOST=0.9966;RSQ=0.8190;ERATE=0.0004;THETA=0.0017;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58300646 . A AT 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5007;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58300729 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0088;AVGPOST=0.9998;RSQ=0.9899;ERATE=0.0003;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58300820 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8039;ERATE=0.0007;THETA=0.0022;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58300823 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0036;AVGPOST=0.9997;RSQ=0.9586;ERATE=0.0003;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58300895 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9865;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58300939 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9812;ERATE=0.0007;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58300973 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58301069 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0023;AVGPOST=0.9973;RSQ=0.5702;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58301214 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8916;ERATE=0.0004;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58301215 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.809;LDAF=0.0089;AVGPOST=0.9971;RSQ=0.8664;ERATE=0.0004;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58301351 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9249;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58301390 . GCC G 57 PASS INDEL;BAVGPOST=0.999;BRSQ=0.628;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.6788;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58301490 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0002;AVGPOST=0.9997;RSQ=0.1354;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 58301491 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2782;AVGPOST=0.9977;RSQ=0.9954;ERATE=0.0004;THETA=0.0005;AC=605;AN=2184 GT:DS:GL:BD 0.27701464 0 1 58301546 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0096;AVGPOST=0.9986;RSQ=0.9549;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58301627 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0399;AVGPOST=0.9996;RSQ=0.9955;ERATE=0.0004;THETA=0.0003;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 58301666 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0088;AVGPOST=0.9998;RSQ=0.9874;ERATE=0.0003;THETA=0.0020;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58301869 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0154;AVGPOST=0.9995;RSQ=0.9888;ERATE=0.0003;THETA=0.0040;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58301972 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0088;AVGPOST=0.9998;RSQ=0.9907;ERATE=0.0003;THETA=0.0008;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58302000 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9988;RSQ=0.8931;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58302081 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9605;ERATE=0.0005;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58302091 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58302100 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.888;LDAF=0.0178;AVGPOST=0.9975;RSQ=0.9405;ERATE=0.0004;THETA=0.0005;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 58302102 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.1447;AVGPOST=0.9953;RSQ=0.9853;ERATE=0.0003;THETA=0.0005;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 58302134 . GA G 50 PASS INDEL;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4385;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58302235 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6474;ERATE=0.0003;THETA=0.0033;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58302300 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0104;AVGPOST=0.9992;RSQ=0.9725;ERATE=0.0004;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58302318 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5914;ERATE=0.0004;THETA=0.0100;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58302319 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0156;AVGPOST=0.9997;RSQ=0.9920;ERATE=0.0003;THETA=0.0008;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58302347 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0004;THETA=0.0046;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58302395 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0089;AVGPOST=0.9994;RSQ=0.9742;ERATE=0.0003;THETA=0.0017;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58302498 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5135;ERATE=0.0003;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58302592 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0084;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58302605 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9812;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58302757 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0030;AVGPOST=0.9993;RSQ=0.8872;ERATE=0.0005;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58302770 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5646;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58302785 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9876;ERATE=0.0003;THETA=0.0058;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58302907 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58302913 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9294;ERATE=0.0003;THETA=0.0118;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58302928 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8214;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58303205 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7422;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58303219 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8810;ERATE=0.0004;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58303316 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58303334 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0101;AVGPOST=0.9998;RSQ=0.9893;ERATE=0.0003;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58303461 . A ACCAC 2387 PASS INDEL;BAVGPOST=0.965;BRSQ=0.750;LDAF=0.0751;AVGPOST=0.9541;RSQ=0.7410;ERATE=0.0057;THETA=0.0009;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 58303721 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.913;LDAF=0.0092;AVGPOST=0.9985;RSQ=0.9320;ERATE=0.0006;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58303837 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5650;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58303853 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0056;AVGPOST=0.9997;RSQ=0.9727;ERATE=0.0004;THETA=0.0071;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58303882 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0054;AVGPOST=0.9992;RSQ=0.9469;ERATE=0.0004;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58303889 . C CA 2376 PASS INDEL;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0240;AVGPOST=0.9982;RSQ=0.9728;ERATE=0.0003;THETA=0.0074;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 58303940 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.731;LDAF=0.0035;AVGPOST=0.9979;RSQ=0.7495;ERATE=0.0003;THETA=0.0070;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58303993 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.965;LDAF=0.1024;AVGPOST=0.9909;RSQ=0.9619;ERATE=0.0007;THETA=0.0003;AC=224;AN=2184 GT:DS:GL:BD 0.10256410 0 1 58304000 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0042;AVGPOST=0.9971;RSQ=0.7578;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58304038 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0037;AVGPOST=0.9994;RSQ=0.9241;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58304131 rs34042993 G GA 38 PASS INDEL;BAVGPOST=0.987;BRSQ=0.576;LDAF=0.0291;AVGPOST=0.9607;RSQ=0.4641;ERATE=0.0067;THETA=0.0059;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58304298 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7282;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58304326 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.860;LDAF=0.0155;AVGPOST=0.9969;RSQ=0.9098;ERATE=0.0004;THETA=0.0008;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 58304360 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4783;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58304365 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58304368 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5707;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58304387 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6781;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58304530 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0174;AVGPOST=0.9977;RSQ=0.9433;ERATE=0.0004;THETA=0.0006;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 58304601 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8940;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58304730 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6588;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58305244 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6409;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58305412 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9209;ERATE=0.0003;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58305432 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1846;AVGPOST=0.9976;RSQ=0.9937;ERATE=0.0004;THETA=0.0014;AC=403;AN=2184 GT:DS:GL:BD 0.18452381 0 1 58305465 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5706;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58305551 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1704;AVGPOST=0.9975;RSQ=0.9927;ERATE=0.0003;THETA=0.0010;AC=370;AN=2184 GT:DS:GL:BD 0.16941392 0 1 58305767 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8648;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58305857 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0352;AVGPOST=0.9999;RSQ=0.9982;ERATE=0.0003;THETA=0.0014;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 58305876 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6667;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58305912 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58306075 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0064;AVGPOST=0.9998;RSQ=0.9863;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58306190 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8005;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58306231 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0036;AVGPOST=0.9985;RSQ=0.8209;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58306290 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58306324 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0017;AVGPOST=0.9982;RSQ=0.6448;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58306389 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1783;AVGPOST=0.9975;RSQ=0.9933;ERATE=0.0003;THETA=0.0003;AC=386;AN=2184 GT:DS:GL:BD 0.17673993 0 1 58306645 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.785;LDAF=0.0061;AVGPOST=0.9961;RSQ=0.7541;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58306721 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8474;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58306814 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7566;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58306840 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0030;AVGPOST=0.9982;RSQ=0.7818;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58306888 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6418;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58306919 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9767;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58306937 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.580;LDAF=0.0039;AVGPOST=0.9963;RSQ=0.6296;ERATE=0.0007;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58307056 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8884;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58307194 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8962;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58307199 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0079;AVGPOST=0.9990;RSQ=0.9647;ERATE=0.0003;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58307258 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8526;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58307271 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.5395;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58307283 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0139;AVGPOST=0.9994;RSQ=0.9819;ERATE=0.0004;THETA=0.0002;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58307311 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1773;AVGPOST=0.9981;RSQ=0.9949;ERATE=0.0003;THETA=0.0012;AC=385;AN=2184 GT:DS:GL:BD 0.17628205 0 1 58307317 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1848;AVGPOST=0.9974;RSQ=0.9928;ERATE=0.0006;THETA=0.0002;AC=403;AN=2184 GT:DS:GL:BD 0.18452381 0 1 58307382 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.860;LDAF=0.0116;AVGPOST=0.9976;RSQ=0.9140;ERATE=0.0004;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58307392 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.957;LDAF=0.0463;AVGPOST=0.9923;RSQ=0.9297;ERATE=0.0005;THETA=0.0003;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 58307490 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5927;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58307532 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6701;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58307849 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0335;AVGPOST=0.9998;RSQ=0.9974;ERATE=0.0003;THETA=0.0002;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 58308042 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1789;AVGPOST=0.9992;RSQ=0.9974;ERATE=0.0004;THETA=0.0005;AC=389;AN=2184 GT:DS:GL:BD 0.17811355 0 1 58308089 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9647;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58308123 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0142;AVGPOST=0.9999;RSQ=0.9953;ERATE=0.0003;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 58308159 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58308214 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0036;AVGPOST=0.9992;RSQ=0.9088;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58308328 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0806;AVGPOST=0.9988;RSQ=0.9926;ERATE=0.0004;THETA=0.0002;AC=176;AN=2184 GT:DS:GL:BD 0.08058608 0 1 58308335 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1777;AVGPOST=0.9985;RSQ=0.9956;ERATE=0.0005;THETA=0.0004;AC=386;AN=2184 GT:DS:GL:BD 0.17673993 0 1 58308440 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6327;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58308454 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0822;AVGPOST=0.9991;RSQ=0.9950;ERATE=0.0004;THETA=0.0003;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 58308529 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58308534 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0824;AVGPOST=0.9992;RSQ=0.9956;ERATE=0.0003;THETA=0.0002;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 58308584 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6819;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58308602 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0275;AVGPOST=0.9992;RSQ=0.9888;ERATE=0.0003;THETA=0.0005;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 58308651 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.952;LDAF=0.0276;AVGPOST=0.9949;RSQ=0.9329;ERATE=0.0004;THETA=0.0004;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 58308720 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7640;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58308821 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0066;AVGPOST=0.9996;RSQ=0.9733;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58308971 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58308976 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.6007;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58309052 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58309177 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.895;LDAF=0.0076;AVGPOST=0.9994;RSQ=0.9633;ERATE=0.0004;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58309370 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0533;AVGPOST=0.9983;RSQ=0.9869;ERATE=0.0004;THETA=0.0003;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 58309379 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58309389 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0015;AVGPOST=0.9992;RSQ=0.8046;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58309575 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58309577 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58309597 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0023;AVGPOST=0.9998;RSQ=0.9548;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58309800 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0058;AVGPOST=0.9994;RSQ=0.9526;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58309815 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.730;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0004;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58309993 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0140;AVGPOST=0.9994;RSQ=0.9825;ERATE=0.0005;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58310007 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=0.9999;RSQ=0.9762;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58310340 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0144;AVGPOST=0.9993;RSQ=0.9783;ERATE=0.0004;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 58310465 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9154;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58310466 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0014;AVGPOST=0.9993;RSQ=0.7897;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58310471 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9799;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58310535 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0827;AVGPOST=0.9992;RSQ=0.9958;ERATE=0.0003;THETA=0.0004;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 58310563 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6374;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58310587 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4778;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58310677 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8366;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58310702 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0141;AVGPOST=0.9999;RSQ=0.9968;ERATE=0.0003;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 58310808 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0088;AVGPOST=0.9989;RSQ=0.9586;ERATE=0.0005;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58310880 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58311260 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6374;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58311591 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.994;LDAF=0.6125;AVGPOST=0.9963;RSQ=0.9930;ERATE=0.0006;THETA=0.0004;AC=1337;AN=2184 GT:DS:GL:BD 0.61217946 1 1 58311637 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.561;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7111;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58311681 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.575;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5882;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58311796 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0146;AVGPOST=0.9992;RSQ=0.9800;ERATE=0.0003;THETA=0.0007;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58311886 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0040;AVGPOST=0.9964;RSQ=0.6638;ERATE=0.0006;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58311902 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.943;LDAF=0.5507;AVGPOST=0.9330;RSQ=0.8992;ERATE=0.0083;THETA=0.0003;AC=1230;AN=2184 GT:DS:GL:BD 0.56318682 1 1 58312068 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0080;AVGPOST=0.9980;RSQ=0.9070;ERATE=0.0004;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58312108 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0066;AVGPOST=0.9945;RSQ=0.6729;ERATE=0.0008;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58312196 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.786;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.7952;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58312228 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6398;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58312229 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58312355 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0208;AVGPOST=0.9982;RSQ=0.9664;ERATE=0.0003;THETA=0.0002;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 58312467 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0823;AVGPOST=0.9997;RSQ=0.9984;ERATE=0.0003;THETA=0.0003;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 58312486 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0857;AVGPOST=0.9963;RSQ=0.9844;ERATE=0.0005;THETA=0.0007;AC=185;AN=2184 GT:DS:GL:BD 0.08470696 0 1 58312490 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.855;LDAF=0.0663;AVGPOST=0.9638;RSQ=0.7805;ERATE=0.0201;THETA=0.0006;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 58312491 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8696;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58312612 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0023;AVGPOST=0.9988;RSQ=0.7912;ERATE=0.0009;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58312692 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.879;LDAF=0.9881;AVGPOST=0.9976;RSQ=0.9127;ERATE=0.0003;THETA=0.0004;AC=2159;AN=2184 GT:DS:GL:BD 0.98855311 1 1 58312831 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6620;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58312834 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0335;AVGPOST=0.9997;RSQ=0.9955;ERATE=0.0004;THETA=0.0003;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 58312863 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7702;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58312914 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0032;AVGPOST=0.9986;RSQ=0.8432;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58313069 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0825;AVGPOST=0.9992;RSQ=0.9956;ERATE=0.0004;THETA=0.0002;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 58313091 . A AACTGGTTT 5820 PASS INDEL;BAVGPOST=0.994;BRSQ=0.897;LDAF=0.0332;AVGPOST=0.9994;RSQ=0.9917;ERATE=0.0003;THETA=0.0003;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 58313099 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.831;LDAF=0.0105;AVGPOST=0.9934;RSQ=0.7691;ERATE=0.0005;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58313102 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.909;LDAF=0.0283;AVGPOST=0.9954;RSQ=0.9406;ERATE=0.0004;THETA=0.0004;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 58313156 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0805;AVGPOST=0.9998;RSQ=0.9986;ERATE=0.0003;THETA=0.0004;AC=176;AN=2184 GT:DS:GL:BD 0.08058608 0 1 58313171 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0200;AVGPOST=0.9992;RSQ=0.9861;ERATE=0.0003;THETA=0.0003;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 58313180 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0546;AVGPOST=0.9976;RSQ=0.9852;ERATE=0.0003;THETA=0.0003;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 58313186 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.850;LDAF=0.0036;AVGPOST=0.9978;RSQ=0.7463;ERATE=0.0009;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58313190 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8940;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58313370 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4821;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58313391 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.781;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6834;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58313533 . T TA 23 PASS INDEL;BAVGPOST=0.999;BRSQ=0.730;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5826;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58313628 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7940;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58313631 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.786;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6713;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58313662 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5891;AVGPOST=0.9974;RSQ=0.9954;ERATE=0.0004;THETA=0.0003;AC=1286;AN=2184 GT:DS:GL:BD 0.58882785 1 1 58313939 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0136;AVGPOST=0.9999;RSQ=0.9958;ERATE=0.0003;THETA=0.0002;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58314187 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0823;AVGPOST=1.0000;RSQ=0.9997;ERATE=0.0003;THETA=0.0003;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 58314191 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8916;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58314242 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0303;AVGPOST=0.9993;RSQ=0.9909;ERATE=0.0003;THETA=0.0022;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 58314247 . TAAG T 416 PASS INDEL;BAVGPOST=0.999;BRSQ=0.759;LDAF=0.0038;AVGPOST=0.9984;RSQ=0.8088;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58314254 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0336;AVGPOST=0.9995;RSQ=0.9930;ERATE=0.0003;THETA=0.0004;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 58314451 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.7419;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58314509 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0065;AVGPOST=0.9999;RSQ=0.9898;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58314644 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7482;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58314645 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58314972 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0046;AVGPOST=0.9987;RSQ=0.8938;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58314984 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8702;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58315036 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58315059 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0012;AVGPOST=0.9996;RSQ=0.8685;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58315224 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58315233 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0031;AVGPOST=0.9992;RSQ=0.9038;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58315271 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58315608 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7543;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58315624 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0124;AVGPOST=0.9998;RSQ=0.9933;ERATE=0.0003;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58315822 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0057;AVGPOST=0.9996;RSQ=0.9690;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58315826 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58315920 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9691;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58316159 . A AT 334 PASS INDEL;BAVGPOST=0.995;BRSQ=0.705;LDAF=0.0080;AVGPOST=0.9940;RSQ=0.6960;ERATE=0.0006;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58316257 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0035;AVGPOST=0.9948;RSQ=0.3975;ERATE=0.0006;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58316275 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.838;LDAF=0.0050;AVGPOST=0.9976;RSQ=0.7883;ERATE=0.0006;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58316355 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0582;AVGPOST=0.9978;RSQ=0.9845;ERATE=0.0006;THETA=0.0003;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 58316452 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7303;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58316492 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8864;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58316507 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6684;ERATE=0.0004;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58316570 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58316803 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0006;AVGPOST=0.9992;RSQ=0.4679;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58316842 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58316854 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0571;AVGPOST=0.9984;RSQ=0.9905;ERATE=0.0003;THETA=0.0028;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 58317110 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0919;AVGPOST=0.9989;RSQ=0.9943;ERATE=0.0004;THETA=0.0002;AC=200;AN=2184 GT:DS:GL:BD 0.09157509 0 1 58317161 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7640;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58317190 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58317303 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0063;AVGPOST=0.9992;RSQ=0.9526;ERATE=0.0005;THETA=0.0023;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58317330 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7238;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58317347 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0920;AVGPOST=0.9996;RSQ=0.9979;ERATE=0.0003;THETA=0.0004;AC=201;AN=2184 GT:DS:GL:BD 0.09203297 0 1 58317400 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0896;AVGPOST=0.9992;RSQ=0.9960;ERATE=0.0004;THETA=0.0002;AC=196;AN=2184 GT:DS:GL:BD 0.08974359 0 1 58317419 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0142;AVGPOST=0.9998;RSQ=0.9922;ERATE=0.0003;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 58317579 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58317603 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6898;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58317779 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3865;AVGPOST=0.9978;RSQ=0.9958;ERATE=0.0004;THETA=0.0002;AC=843;AN=2184 GT:DS:GL:BD 0.38598901 0 1 58317833 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5925;AVGPOST=0.9974;RSQ=0.9960;ERATE=0.0004;THETA=0.0002;AC=1292;AN=2184 GT:DS:GL:BD 0.59157509 1 1 58317868 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.8015;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58317895 . GA G 28 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6204;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58317903 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1742;AVGPOST=0.9990;RSQ=0.9974;ERATE=0.0003;THETA=0.0002;AC=380;AN=2184 GT:DS:GL:BD 0.17399268 0 1 58317981 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0065;AVGPOST=0.9997;RSQ=0.9767;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58317981 rs67106850 AC A 1751 PASS INDEL;BAVGPOST=0.998;BRSQ=0.938;LDAF=0.0143;AVGPOST=0.9997;RSQ=0.9891;ERATE=0.0003;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 58317990 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0330;AVGPOST=0.9998;RSQ=0.9968;ERATE=0.0003;THETA=0.0003;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 58317997 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8123;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58318019 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58318032 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0547;AVGPOST=0.9994;RSQ=0.9951;ERATE=0.0003;THETA=0.0003;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 58318062 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7344;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58318333 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6606;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58318449 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0027;AVGPOST=0.9988;RSQ=0.8197;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58318493 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.753;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.6973;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58318903 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0916;AVGPOST=0.9983;RSQ=0.9927;ERATE=0.0004;THETA=0.0003;AC=201;AN=2184 GT:DS:GL:BD 0.09203297 0 1 58318938 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.714;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.7078;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58319014 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58319068 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.6918;ERATE=0.0008;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58319154 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0544;AVGPOST=0.9998;RSQ=0.9984;ERATE=0.0003;THETA=0.0003;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 58319229 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0148;AVGPOST=0.9990;RSQ=0.9767;ERATE=0.0003;THETA=0.0005;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58319230 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7337;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58319252 . TTAA T 29581 PASS INDEL;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.1876;AVGPOST=0.9985;RSQ=0.9956;ERATE=0.0003;THETA=0.0002;AC=408;AN=2184 GT:DS:GL:BD 0.18681319 0 1 58319265 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3997;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58319278 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3632;AVGPOST=0.9977;RSQ=0.9956;ERATE=0.0006;THETA=0.0002;AC=791;AN=2184 GT:DS:GL:BD 0.36217949 0 1 58319283 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.0919;AVGPOST=0.9986;RSQ=0.9932;ERATE=0.0004;THETA=0.0005;AC=201;AN=2184 GT:DS:GL:BD 0.09203297 0 1 58319383 . A AT 681 PASS INDEL;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0088;AVGPOST=0.9985;RSQ=0.9245;ERATE=0.0004;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58319534 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5952;AVGPOST=0.9958;RSQ=0.9932;ERATE=0.0004;THETA=0.0005;AC=1298;AN=2184 GT:DS:GL:BD 0.59432232 1 1 58319607 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.690;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6978;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58319612 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.4249;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58319681 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8344;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58319682 . ATAGAG A 268 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58319724 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0037;AVGPOST=0.9995;RSQ=0.9373;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58319756 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0065;AVGPOST=0.9997;RSQ=0.9764;ERATE=0.0004;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58319828 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.956;LDAF=0.0268;AVGPOST=0.9949;RSQ=0.9259;ERATE=0.0006;THETA=0.0002;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 58319935 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9347;ERATE=0.0003;THETA=0.0035;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58319961 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5251;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58320063 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.764;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8116;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58320165 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0522;AVGPOST=0.9997;RSQ=0.9975;ERATE=0.0003;THETA=0.0004;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 58320186 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58320383 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8495;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58320501 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5540;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58320570 . TC T 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7153;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58320618 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8448;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58320724 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58320756 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0252;AVGPOST=0.9989;RSQ=0.9854;ERATE=0.0003;THETA=0.0005;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 58320869 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7183;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58320894 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.900;LDAF=0.0075;AVGPOST=0.9985;RSQ=0.9160;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58320933 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0285;AVGPOST=0.9991;RSQ=0.9892;ERATE=0.0003;THETA=0.0005;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 58321020 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1883;AVGPOST=0.9988;RSQ=0.9967;ERATE=0.0004;THETA=0.0003;AC=410;AN=2184 GT:DS:GL:BD 0.18772894 0 1 58321117 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7764;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58321209 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5569;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58321251 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7385;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58321338 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.672;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8261;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58321339 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58321419 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8389;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58321511 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6656;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58321601 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0521;AVGPOST=0.9984;RSQ=0.9898;ERATE=0.0003;THETA=0.0003;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 58321602 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58321630 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58321696 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58321698 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1892;AVGPOST=0.9987;RSQ=0.9964;ERATE=0.0003;THETA=0.0005;AC=411;AN=2184 GT:DS:GL:BD 0.18818681 0 1 58321824 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.616;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6504;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58321849 . AAG A 366 PASS INDEL;BAVGPOST=0.987;BRSQ=0.932;LDAF=0.0888;AVGPOST=0.9950;RSQ=0.9761;ERATE=0.0006;THETA=0.0004;AC=198;AN=2184 GT:DS:GL:BD 0.09065934 0 1 58321851 rs35900535 GAGA G 10422 PASS INDEL;BAVGPOST=0.988;BRSQ=0.942;LDAF=0.0893;AVGPOST=0.9951;RSQ=0.9763;ERATE=0.0005;THETA=0.0003;AC=198;AN=2184 GT:DS:GL:BD 0.09065934 0 1 58321857 . AAGC A 1519 PASS INDEL;BAVGPOST=0.987;BRSQ=0.938;LDAF=0.0890;AVGPOST=0.9955;RSQ=0.9786;ERATE=0.0003;THETA=0.0004;AC=198;AN=2184 GT:DS:GL:BD 0.09065934 0 1 58321909 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3865;AVGPOST=0.9965;RSQ=0.9936;ERATE=0.0003;THETA=0.0002;AC=842;AN=2184 GT:DS:GL:BD 0.38553113 0 1 58321989 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6343;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58322133 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58322183 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.966;LDAF=0.0343;AVGPOST=0.9988;RSQ=0.9851;ERATE=0.0004;THETA=0.0004;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 58322196 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4410;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58322344 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.5805;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58322481 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0250;AVGPOST=0.9993;RSQ=0.9919;ERATE=0.0003;THETA=0.0008;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 58322495 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58322507 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0514;AVGPOST=0.9996;RSQ=0.9964;ERATE=0.0003;THETA=0.0004;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 58322529 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58322563 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58322620 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58322803 . TAGA T 24 PASS INDEL;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0025;AVGPOST=0.9961;RSQ=0.4301;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58322881 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58322884 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58323027 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0032;AVGPOST=0.9998;RSQ=0.9661;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58323049 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5771;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58323121 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7089;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58323145 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0576;AVGPOST=0.9998;RSQ=0.9981;ERATE=0.0003;THETA=0.0003;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 58323178 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58323196 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0577;AVGPOST=0.9997;RSQ=0.9977;ERATE=0.0003;THETA=0.0003;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 58323252 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5077;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58323310 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9422;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58323333 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.920;LDAF=0.0102;AVGPOST=0.9998;RSQ=0.9891;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58323398 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58323431 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4655;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58323656 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.711;LDAF=0.0043;AVGPOST=0.9980;RSQ=0.8201;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58323708 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8864;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58323829 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0576;AVGPOST=0.9999;RSQ=0.9989;ERATE=0.0003;THETA=0.0004;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 58323832 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9676;ERATE=0.0003;THETA=0.0020;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58323916 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0023;AVGPOST=0.9996;RSQ=0.9281;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58323943 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3619;AVGPOST=0.9975;RSQ=0.9963;ERATE=0.0003;THETA=0.0004;AC=788;AN=2184 GT:DS:GL:BD 0.36080587 0 1 58323953 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58323954 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58324010 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1730;AVGPOST=0.9989;RSQ=0.9965;ERATE=0.0004;THETA=0.0002;AC=378;AN=2184 GT:DS:GL:BD 0.17307693 0 1 58324034 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0899;AVGPOST=0.9988;RSQ=0.9946;ERATE=0.0004;THETA=0.0001;AC=197;AN=2184 GT:DS:GL:BD 0.09020147 0 1 58324138 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9141;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58324281 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0922;AVGPOST=0.9994;RSQ=0.9970;ERATE=0.0003;THETA=0.0003;AC=201;AN=2184 GT:DS:GL:BD 0.09203297 0 1 58324284 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6144;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58324356 . ACTGT A 196 PASS INDEL;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5155;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58324476 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9865;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58324482 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3667;AVGPOST=0.9986;RSQ=0.9975;ERATE=0.0005;THETA=0.0002;AC=799;AN=2184 GT:DS:GL:BD 0.36584249 0 1 58324512 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0136;AVGPOST=0.9995;RSQ=0.9838;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58324586 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6350;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58324593 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4052;AVGPOST=0.9958;RSQ=0.9926;ERATE=0.0008;THETA=0.0004;AC=882;AN=2184 GT:DS:GL:BD 0.40384614 0 1 58324711 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5782;AVGPOST=0.9994;RSQ=0.9988;ERATE=0.0003;THETA=0.0003;AC=1261;AN=2184 GT:DS:GL:BD 0.57738096 1 1 58324761 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1165;AVGPOST=0.9993;RSQ=0.9972;ERATE=0.0003;THETA=0.0005;AC=255;AN=2184 GT:DS:GL:BD 0.11675824 0 1 58324779 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.5921;AVGPOST=0.9987;RSQ=0.9974;ERATE=0.0004;THETA=0.0004;AC=1292;AN=2184 GT:DS:GL:BD 0.59157509 1 1 58324930 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58325013 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.741;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7351;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58325014 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0921;AVGPOST=0.9995;RSQ=0.9972;ERATE=0.0003;THETA=0.0003;AC=201;AN=2184 GT:DS:GL:BD 0.09203297 0 1 58325306 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.964;LDAF=0.0152;AVGPOST=0.9988;RSQ=0.9683;ERATE=0.0004;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58325493 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.963;LDAF=0.0513;AVGPOST=0.9981;RSQ=0.9840;ERATE=0.0003;THETA=0.0002;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 58325494 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.963;LDAF=0.0513;AVGPOST=0.9984;RSQ=0.9866;ERATE=0.0003;THETA=0.0004;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 58325536 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.6988;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58325646 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58325663 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8697;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58325861 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7632;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58326056 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0018;AVGPOST=0.9977;RSQ=0.6162;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58326194 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.977;LDAF=0.0648;AVGPOST=0.9961;RSQ=0.9754;ERATE=0.0003;THETA=0.0006;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 58326222 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7393;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58326294 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.754;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4427;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58326357 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4924;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58326491 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0142;AVGPOST=1.0000;RSQ=0.9984;ERATE=0.0003;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 58326747 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58326758 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58326760 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.682;LDAF=0.0026;AVGPOST=0.9978;RSQ=0.6623;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58326855 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5672;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58326888 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8876;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58327019 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1495;AVGPOST=0.9993;RSQ=0.9974;ERATE=0.0004;THETA=0.0002;AC=326;AN=2184 GT:DS:GL:BD 0.14926741 0 1 58327094 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0932;AVGPOST=0.9980;RSQ=0.9920;ERATE=0.0004;THETA=0.0003;AC=203;AN=2184 GT:DS:GL:BD 0.09294872 0 1 58327235 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.772;LDAF=0.0052;AVGPOST=0.9965;RSQ=0.7452;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58327503 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.982;LDAF=0.0977;AVGPOST=0.9973;RSQ=0.9876;ERATE=0.0005;THETA=0.0002;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 58327555 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.715;LDAF=0.0036;AVGPOST=0.9969;RSQ=0.6762;ERATE=0.0005;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58327889 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6936;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58328090 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.1008;AVGPOST=0.9970;RSQ=0.9874;ERATE=0.0005;THETA=0.0003;AC=220;AN=2184 GT:DS:GL:BD 0.10073260 0 1 58328226 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.931;LDAF=0.0043;AVGPOST=0.9985;RSQ=0.8953;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58328459 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.829;LDAF=0.0035;AVGPOST=0.9991;RSQ=0.8870;ERATE=0.0005;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58328516 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4678;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58328735 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6904;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58328821 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0029;AVGPOST=0.9987;RSQ=0.8427;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58328982 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0032;AVGPOST=0.9984;RSQ=0.8256;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58329016 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58329037 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6289;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58329114 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0146;AVGPOST=0.9990;RSQ=0.9723;ERATE=0.0003;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 58329157 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.5823;AVGPOST=0.9973;RSQ=0.9953;ERATE=0.0006;THETA=0.0004;AC=1269;AN=2184 GT:DS:GL:BD 0.58104396 1 1 58329317 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.957;LDAF=0.0438;AVGPOST=0.9977;RSQ=0.9802;ERATE=0.0003;THETA=0.0003;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 58329412 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0530;AVGPOST=0.9998;RSQ=0.9983;ERATE=0.0003;THETA=0.0005;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 58329745 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0515;AVGPOST=0.9984;RSQ=0.9890;ERATE=0.0004;THETA=0.0003;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 58330059 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58330181 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.945;LDAF=0.0138;AVGPOST=0.9965;RSQ=0.9058;ERATE=0.0003;THETA=0.0006;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 58330204 . T TGC 835 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0137;AVGPOST=0.9960;RSQ=0.8802;ERATE=0.0006;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58330319 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.906;LDAF=0.0162;AVGPOST=0.9964;RSQ=0.9002;ERATE=0.0008;THETA=0.0004;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58330335 rs72207916 TTTATTTATTTATTTATTTAA T 3693 PASS INDEL;BAVGPOST=0.975;BRSQ=0.765;LDAF=0.0661;AVGPOST=0.9862;RSQ=0.9099;ERATE=0.0013;THETA=0.0018;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 58330355 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.892;BRSQ=0.801;LDAF=0.5072;AVGPOST=0.8360;RSQ=0.7474;ERATE=0.0359;THETA=0.0003;AC=1135;AN=2184 GT:DS:GL:BD 0.51968867 1 1 58330355 rs66585720 A AT 1490 PASS INDEL;BAVGPOST=0.798;BRSQ=0.327;LDAF=0.2457;AVGPOST=0.7277;RSQ=0.3748;ERATE=0.0499;THETA=0.0004;AC=333;AN=2184 GT:DS:GL:BD 0.15247253 0 1 58330413 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0582;AVGPOST=0.9981;RSQ=0.9852;ERATE=0.0005;THETA=0.0003;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 58330448 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0316;AVGPOST=0.9928;RSQ=0.9150;ERATE=0.0006;THETA=0.0007;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 58330463 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.693;LDAF=0.0147;AVGPOST=0.9886;RSQ=0.7081;ERATE=0.0005;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58330724 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0091;AVGPOST=0.9992;RSQ=0.9674;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58330725 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.821;LDAF=0.0053;AVGPOST=0.9986;RSQ=0.8828;ERATE=0.0006;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58330765 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.847;LDAF=0.0026;AVGPOST=0.9989;RSQ=0.8216;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58330801 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1901;AVGPOST=0.9982;RSQ=0.9953;ERATE=0.0004;THETA=0.0004;AC=413;AN=2184 GT:DS:GL:BD 0.18910256 0 1 58330810 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58331099 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.5502;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58331214 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7258;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58331228 . CTGGGCA C 7880 PASS INDEL;BAVGPOST=0.997;BRSQ=0.956;LDAF=0.0303;AVGPOST=0.9936;RSQ=0.9220;ERATE=0.0003;THETA=0.0003;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 58331251 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9905;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58331345 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7052;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58331350 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6707;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58331425 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0300;AVGPOST=0.9992;RSQ=0.9886;ERATE=0.0004;THETA=0.0004;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 58331441 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0047;AVGPOST=0.9977;RSQ=0.8430;ERATE=0.0004;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58331480 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6173;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58331594 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6703;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58331595 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6062;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58331627 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0578;AVGPOST=0.9995;RSQ=0.9963;ERATE=0.0003;THETA=0.0004;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 58331776 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.1958;AVGPOST=0.9956;RSQ=0.9892;ERATE=0.0009;THETA=0.0003;AC=427;AN=2184 GT:DS:GL:BD 0.19551282 0 1 58331844 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58331857 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0183;AVGPOST=0.9993;RSQ=0.9823;ERATE=0.0003;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 58331909 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58331959 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7344;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58332145 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58332196 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9859;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58332224 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0031;AVGPOST=0.9994;RSQ=0.9024;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58332264 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9677;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58332330 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0035;AVGPOST=0.9992;RSQ=0.9070;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58332384 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5624;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58332579 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9676;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58332595 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8856;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58332636 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5979;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58332742 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0531;AVGPOST=0.9998;RSQ=0.9983;ERATE=0.0003;THETA=0.0003;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 58332757 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58332845 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7702;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58332873 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8044;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58332941 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7862;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58332947 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0975;AVGPOST=0.9978;RSQ=0.9889;ERATE=0.0004;THETA=0.0002;AC=212;AN=2184 GT:DS:GL:BD 0.09706960 0 1 58332957 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1854;AVGPOST=0.9984;RSQ=0.9956;ERATE=0.0003;THETA=0.0003;AC=403;AN=2184 GT:DS:GL:BD 0.18452381 0 1 58332984 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0144;AVGPOST=0.9995;RSQ=0.9835;ERATE=0.0003;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 58332985 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8844;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58332990 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=0.9998;RSQ=0.9812;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58333022 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58333156 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.877;LDAF=0.0058;AVGPOST=0.9984;RSQ=0.8960;ERATE=0.0004;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58333255 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0531;AVGPOST=0.9994;RSQ=0.9946;ERATE=0.0003;THETA=0.0003;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 58333282 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9293;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58333292 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0047;AVGPOST=0.9991;RSQ=0.9302;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58333369 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0311;AVGPOST=0.9999;RSQ=0.9980;ERATE=0.0003;THETA=0.0003;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 58333464 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0177;AVGPOST=0.9982;RSQ=0.9633;ERATE=0.0003;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 58333488 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0071;AVGPOST=0.9995;RSQ=0.9681;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58333600 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0530;AVGPOST=0.9999;RSQ=0.9987;ERATE=0.0003;THETA=0.0005;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 58333820 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9451;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58333976 . T TA 6393 PASS INDEL;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0312;AVGPOST=0.9988;RSQ=0.9835;ERATE=0.0005;THETA=0.0004;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 58334008 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0142;AVGPOST=0.9999;RSQ=0.9968;ERATE=0.0003;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 58334025 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0016;AVGPOST=0.9976;RSQ=0.4635;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58334164 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0019;AVGPOST=0.9993;RSQ=0.8421;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58334191 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9936;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58334211 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58334289 . T TG 1355 PASS INDEL;BAVGPOST=0.995;BRSQ=0.858;LDAF=0.0197;AVGPOST=0.9897;RSQ=0.7978;ERATE=0.0020;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 58334322 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1864;AVGPOST=0.9991;RSQ=0.9972;ERATE=0.0004;THETA=0.0003;AC=406;AN=2184 GT:DS:GL:BD 0.18589744 0 1 58334384 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58334388 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58334432 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58334510 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0532;AVGPOST=0.9995;RSQ=0.9956;ERATE=0.0003;THETA=0.0003;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 58334623 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.870;LDAF=0.0133;AVGPOST=0.9963;RSQ=0.9003;ERATE=0.0005;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 58334639 . A AC 34 PASS INDEL;BAVGPOST=0.999;BRSQ=0.715;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.6834;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58334806 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.719;LDAF=0.0034;AVGPOST=0.9984;RSQ=0.8010;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58334845 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58334851 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9767;ERATE=0.0003;THETA=0.0001;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58334872 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0064;AVGPOST=0.9988;RSQ=0.9407;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58334907 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0037;AVGPOST=0.9996;RSQ=0.9591;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58335012 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5066;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58335097 . GCA G 344 PASS INDEL;BAVGPOST=0.980;BRSQ=0.814;LDAF=0.0483;AVGPOST=0.9933;RSQ=0.9537;ERATE=0.0003;THETA=0.0004;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 58335098 rs112579838 CACAA C 10193 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0590;AVGPOST=0.9983;RSQ=0.9904;ERATE=0.0003;THETA=0.0006;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 58335172 . GAGA G 384 PASS INDEL;BAVGPOST=0.998;BRSQ=0.760;LDAF=0.0059;AVGPOST=0.9973;RSQ=0.8395;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58335280 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58335321 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6495;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58335338 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9670;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58335431 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58335445 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.765;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.8114;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58335504 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.0991;AVGPOST=0.9993;RSQ=0.9967;ERATE=0.0004;THETA=0.0005;AC=217;AN=2184 GT:DS:GL:BD 0.09935898 0 1 58335533 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58335646 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0141;AVGPOST=0.9998;RSQ=0.9923;ERATE=0.0003;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 58335775 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.627;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5888;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58336058 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3430;AVGPOST=0.9990;RSQ=0.9981;ERATE=0.0004;THETA=0.0003;AC=749;AN=2184 GT:DS:GL:BD 0.34294870 0 1 58336186 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7637;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58336349 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.6184;AVGPOST=0.9940;RSQ=0.9897;ERATE=0.0009;THETA=0.0003;AC=1352;AN=2184 GT:DS:GL:BD 0.61904764 1 1 58336574 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58336578 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.0995;AVGPOST=0.9985;RSQ=0.9936;ERATE=0.0003;THETA=0.0002;AC=217;AN=2184 GT:DS:GL:BD 0.09935898 0 1 58336656 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58336725 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6392;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58336746 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9921;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58336766 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58336797 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.870;LDAF=0.0101;AVGPOST=0.9978;RSQ=0.9197;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58336945 rs55726940 ACTAT A 31903 PASS INDEL;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1851;AVGPOST=0.9962;RSQ=0.9891;ERATE=0.0010;THETA=0.0002;AC=402;AN=2184 GT:DS:GL:BD 0.18406594 0 1 58336977 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7853;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58336981 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9451;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58337011 rs71737983 ATTTAT A 1878 PASS INDEL;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0144;AVGPOST=0.9994;RSQ=0.9799;ERATE=0.0004;THETA=0.0002;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 58337164 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0063;AVGPOST=0.9993;RSQ=0.9464;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58337219 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0064;AVGPOST=0.9980;RSQ=0.8729;ERATE=0.0008;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58337412 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8619;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58337440 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9620;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58337487 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58337515 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1921;AVGPOST=0.9984;RSQ=0.9955;ERATE=0.0006;THETA=0.0002;AC=418;AN=2184 GT:DS:GL:BD 0.19139194 0 1 58337560 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9713;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58337634 . TA T 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7105;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58337642 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0076;AVGPOST=0.9988;RSQ=0.9486;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58337836 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7298;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58337889 . CAT C 315 PASS INDEL;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7664;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58338041 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7151;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58338219 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7109;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58338259 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9460;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58338293 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8864;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58338309 . GA G 11 PASS INDEL;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0015;AVGPOST=0.9976;RSQ=0.3274;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58338418 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58338419 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58338690 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58338696 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6535;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58338789 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2631;AVGPOST=0.9985;RSQ=0.9968;ERATE=0.0004;THETA=0.0004;AC=574;AN=2184 GT:DS:GL:BD 0.26282051 0 1 58338819 . TTTATCATA T 3984 PASS INDEL;BAVGPOST=0.992;BRSQ=0.772;LDAF=0.0170;AVGPOST=0.9930;RSQ=0.8557;ERATE=0.0005;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 58338947 . CTCTATAT C 1213 PASS INDEL;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0060;AVGPOST=0.9993;RSQ=0.9494;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58339016 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7408;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58339099 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.835;LDAF=0.0045;AVGPOST=0.9989;RSQ=0.9072;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58339114 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0043;AVGPOST=0.9991;RSQ=0.9207;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58339257 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0025;AVGPOST=0.9975;RSQ=0.6226;ERATE=0.0011;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58339267 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4432;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58339284 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6340;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58339380 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0004;AVGPOST=0.9993;RSQ=0.3773;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 58339451 . ATAGATG A 1675 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9936;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58339643 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6019;AVGPOST=0.9987;RSQ=0.9975;ERATE=0.0004;THETA=0.0002;AC=1313;AN=2184 GT:DS:GL:BD 0.60119045 1 1 58339716 . AG A 44 PASS INDEL;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6404;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58339909 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0062;AVGPOST=0.9995;RSQ=0.9650;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58339986 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0260;AVGPOST=1.0000;RSQ=0.9993;ERATE=0.0003;THETA=0.0002;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 58340089 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9212;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58340123 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=0.9999;RSQ=0.9929;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58340139 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1945;AVGPOST=0.9988;RSQ=0.9970;ERATE=0.0003;THETA=0.0004;AC=424;AN=2184 GT:DS:GL:BD 0.19413920 0 1 58340158 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0064;AVGPOST=0.9991;RSQ=0.9385;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58340203 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58340296 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58340322 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6620;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58340323 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7918;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58340371 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7390;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58340414 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0533;AVGPOST=0.9991;RSQ=0.9926;ERATE=0.0003;THETA=0.0002;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 58340418 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0025;AVGPOST=0.9979;RSQ=0.6752;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58340485 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7568;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58340506 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58340524 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58340562 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5558;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58340612 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0062;AVGPOST=0.9994;RSQ=0.9673;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58340675 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.666;LDAF=0.0020;AVGPOST=0.9992;RSQ=0.8262;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58340693 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6186;AVGPOST=0.9983;RSQ=0.9970;ERATE=0.0006;THETA=0.0002;AC=1349;AN=2184 GT:DS:GL:BD 0.61767399 1 1 58340729 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4728;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58340795 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9797;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58340902 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.8031;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58340968 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7815;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58341050 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2854;AVGPOST=0.9982;RSQ=0.9967;ERATE=0.0003;THETA=0.0002;AC=623;AN=2184 GT:DS:GL:BD 0.28525642 0 1 58341123 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5229;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58341203 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58341261 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58341277 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9195;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58341287 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6889;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58341360 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7373;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58341444 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6190;AVGPOST=0.9977;RSQ=0.9959;ERATE=0.0008;THETA=0.0004;AC=1351;AN=2184 GT:DS:GL:BD 0.61858976 1 1 58341445 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0020;AVGPOST=0.9978;RSQ=0.6497;ERATE=0.0004;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58341569 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9854;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58341627 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6747;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58341632 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5936;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58341641 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0019;AVGPOST=0.9977;RSQ=0.5208;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58341648 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.843;LDAF=0.0020;AVGPOST=0.9989;RSQ=0.7848;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58341780 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0038;AVGPOST=0.9986;RSQ=0.8524;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58341826 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58341981 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58341982 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58342059 . GA G 127 PASS INDEL;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7103;ERATE=0.0006;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58342061 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8889;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58342064 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58342126 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7526;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58342266 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0070;AVGPOST=0.9995;RSQ=0.9655;ERATE=0.0004;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58342391 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6570;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58342421 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58342435 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0635;AVGPOST=0.9996;RSQ=0.9976;ERATE=0.0003;THETA=0.0003;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 58342439 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58342765 . TATG T 120 PASS INDEL;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58342769 . AT A 179 PASS INDEL;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58342772 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8016;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58342826 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58342848 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58342862 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0125;AVGPOST=0.9995;RSQ=0.9818;ERATE=0.0003;THETA=0.0002;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58342956 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0659;AVGPOST=0.9998;RSQ=0.9989;ERATE=0.0003;THETA=0.0002;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 58343039 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9102;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58343217 rs58070219 A AT 375 PASS INDEL;BAVGPOST=0.487;BRSQ=0.105;LDAF=0.2937;AVGPOST=0.6937;RSQ=0.3896;ERATE=0.0183;THETA=0.0006;AC=436;AN=2184 GT:DS:GL:BD 0.19963370 0 1 58343643 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0029;AVGPOST=0.9987;RSQ=0.8228;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58343669 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.881;LDAF=0.0156;AVGPOST=0.9962;RSQ=0.8892;ERATE=0.0004;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 58343827 rs5774376 TG T 22115 PASS INDEL;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1894;AVGPOST=0.9936;RSQ=0.9848;ERATE=0.0009;THETA=0.0005;AC=407;AN=2184 GT:DS:GL:BD 0.18635531 0 1 58343972 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5594;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58343983 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1872;AVGPOST=0.9979;RSQ=0.9945;ERATE=0.0006;THETA=0.0002;AC=406;AN=2184 GT:DS:GL:BD 0.18589744 0 1 58343990 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6903;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58344148 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9997;RSQ=0.9778;ERATE=0.0003;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58344255 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.673;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4934;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58344351 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4189;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58344405 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8531;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58344479 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0048;AVGPOST=0.9990;RSQ=0.9194;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58344610 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3159;AVGPOST=0.9967;RSQ=0.9935;ERATE=0.0006;THETA=0.0002;AC=687;AN=2184 GT:DS:GL:BD 0.31456044 0 1 58344615 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0305;AVGPOST=0.9991;RSQ=0.9902;ERATE=0.0003;THETA=0.0003;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 58344647 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58344695 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0191;AVGPOST=0.9982;RSQ=0.9589;ERATE=0.0003;THETA=0.0002;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 58344802 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.947;LDAF=0.0257;AVGPOST=0.9977;RSQ=0.9647;ERATE=0.0003;THETA=0.0003;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 58344833 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1937;AVGPOST=0.9992;RSQ=0.9977;ERATE=0.0003;THETA=0.0003;AC=422;AN=2184 GT:DS:GL:BD 0.19322345 0 1 58344965 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1539;AVGPOST=0.9975;RSQ=0.9920;ERATE=0.0004;THETA=0.0005;AC=336;AN=2184 GT:DS:GL:BD 0.15384616 0 1 58344968 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0532;AVGPOST=0.9991;RSQ=0.9933;ERATE=0.0003;THETA=0.0004;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 58345025 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9073;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58345076 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.907;LDAF=0.0198;AVGPOST=0.9946;RSQ=0.9000;ERATE=0.0004;THETA=0.0002;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 58345104 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58345139 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58345182 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58345238 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.0990;AVGPOST=0.9993;RSQ=0.9964;ERATE=0.0003;THETA=0.0004;AC=217;AN=2184 GT:DS:GL:BD 0.09935898 0 1 58345247 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0069;AVGPOST=0.9989;RSQ=0.9289;ERATE=0.0004;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58345256 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.855;LDAF=0.0045;AVGPOST=0.9989;RSQ=0.8896;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58345298 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.727;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.6414;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58345319 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58345499 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.817;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9764;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58345508 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1855;AVGPOST=0.9985;RSQ=0.9956;ERATE=0.0004;THETA=0.0003;AC=403;AN=2184 GT:DS:GL:BD 0.18452381 0 1 58345643 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0143;AVGPOST=0.9995;RSQ=0.9833;ERATE=0.0003;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 58345648 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.0521;AVGPOST=0.9989;RSQ=0.9925;ERATE=0.0004;THETA=0.0002;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 58345777 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0018;AVGPOST=0.9978;RSQ=0.4899;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58345779 . TA T 356 PASS INDEL;BAVGPOST=0.993;BRSQ=0.614;LDAF=0.0103;AVGPOST=0.9909;RSQ=0.6574;ERATE=0.0005;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58345785 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0040;AVGPOST=0.9981;RSQ=0.8184;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58345890 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1934;AVGPOST=0.9984;RSQ=0.9956;ERATE=0.0005;THETA=0.0007;AC=422;AN=2184 GT:DS:GL:BD 0.19322345 0 1 58345932 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0055;AVGPOST=0.9998;RSQ=0.9801;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58345943 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1947;AVGPOST=0.9989;RSQ=0.9969;ERATE=0.0004;THETA=0.0003;AC=424;AN=2184 GT:DS:GL:BD 0.19413920 0 1 58345996 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0029;AVGPOST=0.9987;RSQ=0.7984;ERATE=0.0005;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58346008 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58346181 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58346207 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1539;AVGPOST=0.9985;RSQ=0.9953;ERATE=0.0003;THETA=0.0007;AC=336;AN=2184 GT:DS:GL:BD 0.15384616 0 1 58346221 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6947;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58346253 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5471;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58346263 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7129;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58346339 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58346382 . C CT 22 PASS INDEL;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5771;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58346433 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6181;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58346531 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0551;AVGPOST=0.9987;RSQ=0.9893;ERATE=0.0004;THETA=0.0008;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 58346679 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8261;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58346793 . GATTAA G 852 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0064;AVGPOST=0.9989;RSQ=0.9198;ERATE=0.0004;THETA=0.0084;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58347198 . T TA 24 PASS INDEL;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5663;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58347433 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9667;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58347601 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1859;AVGPOST=0.9966;RSQ=0.9913;ERATE=0.0004;THETA=0.0007;AC=403;AN=2184 GT:DS:GL:BD 0.18452381 0 1 58347606 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0038;AVGPOST=0.9998;RSQ=0.9767;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58347839 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.716;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5921;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58347957 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0037;AVGPOST=0.9980;RSQ=0.8365;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58347973 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58348157 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0070;AVGPOST=0.9995;RSQ=0.9690;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58348283 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=0.9996;RSQ=0.9759;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58348295 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0064;AVGPOST=0.9999;RSQ=0.9932;ERATE=0.0003;THETA=0.0019;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58348376 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0080;AVGPOST=0.9995;RSQ=0.9680;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58348413 . T TA 296 PASS INDEL;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6752;ERATE=0.0010;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58348437 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0065;AVGPOST=0.9989;RSQ=0.9222;ERATE=0.0005;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58348492 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58348554 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7971;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58348560 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58348728 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.0979;AVGPOST=0.9995;RSQ=0.9974;ERATE=0.0003;THETA=0.0006;AC=214;AN=2184 GT:DS:GL:BD 0.09798535 0 1 58348886 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7944;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58348937 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6701;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58349005 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.994;LDAF=0.6243;AVGPOST=0.9949;RSQ=0.9922;ERATE=0.0006;THETA=0.0002;AC=1362;AN=2184 GT:DS:GL:BD 0.62362635 1 1 58349039 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0013;AVGPOST=0.9996;RSQ=0.8649;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58349062 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8399;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58349358 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0044;AVGPOST=0.9988;RSQ=0.9007;ERATE=0.0003;THETA=0.0012;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58349448 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7126;ERATE=0.0006;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58349468 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0065;AVGPOST=0.9998;RSQ=0.9868;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58349534 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8156;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58349698 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6737;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58349715 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9483;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58349719 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7667;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58349808 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.817;LDAF=0.0030;AVGPOST=0.9973;RSQ=0.6837;ERATE=0.0006;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58349931 . CAGGGTG C 77 PASS INDEL;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0029;AVGPOST=0.9984;RSQ=0.7658;ERATE=0.0006;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58349952 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0013;AVGPOST=0.9999;RSQ=0.9516;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58350048 . T TG 229 PASS INDEL;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5590;ERATE=0.0006;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58350112 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0101;AVGPOST=0.9986;RSQ=0.9397;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58350144 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.866;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9385;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58350239 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.862;LDAF=0.0044;AVGPOST=0.9979;RSQ=0.7975;ERATE=0.0009;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58350287 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5817;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58350296 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8303;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58350364 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.6157;AVGPOST=0.9956;RSQ=0.9932;ERATE=0.0003;THETA=0.0005;AC=1343;AN=2184 GT:DS:GL:BD 0.61492676 1 1 58350399 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9997;RSQ=0.9766;ERATE=0.0003;THETA=0.0040;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58350767 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1028;AVGPOST=0.9977;RSQ=0.9894;ERATE=0.0004;THETA=0.0011;AC=224;AN=2184 GT:DS:GL:BD 0.10256410 0 1 58350805 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0174;AVGPOST=0.9985;RSQ=0.9621;ERATE=0.0003;THETA=0.0030;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 58350991 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0027;AVGPOST=0.9998;RSQ=0.9702;ERATE=0.0003;THETA=0.0029;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58351118 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8845;ERATE=0.0003;THETA=0.0042;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58351154 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=1.0000;RSQ=0.9932;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58351163 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0055;AVGPOST=0.9976;RSQ=0.8234;ERATE=0.0004;THETA=0.0033;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58351207 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8441;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58351240 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58351268 . C CCTT 769 PASS INDEL;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9057;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58351707 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.625;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6550;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58351888 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0147;AVGPOST=0.9985;RSQ=0.9571;ERATE=0.0004;THETA=0.0033;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58351889 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.900;LDAF=0.0109;AVGPOST=0.9990;RSQ=0.9619;ERATE=0.0004;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58351945 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4164;ERATE=0.0005;THETA=0.0083;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58352159 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6494;ERATE=0.0003;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58352189 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8737;ERATE=0.0006;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58352196 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7129;ERATE=0.0003;THETA=0.0039;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58352213 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8540;ERATE=0.0003;THETA=0.0080;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58352417 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5893;ERATE=0.0003;THETA=0.0071;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58352422 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6494;ERATE=0.0004;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58352472 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.2502;AVGPOST=0.9914;RSQ=0.9839;ERATE=0.0005;THETA=0.0014;AC=543;AN=2184 GT:DS:GL:BD 0.24862637 0 1 58352478 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6911;ERATE=0.0004;THETA=0.0119;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58352643 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.5954;AVGPOST=0.9934;RSQ=0.9894;ERATE=0.0005;THETA=0.0002;AC=1300;AN=2184 GT:DS:GL:BD 0.59523809 1 1 58352672 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7582;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58352673 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0050;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58352688 . C CT 61 PASS INDEL;BAVGPOST=0.999;BRSQ=0.667;LDAF=0.0027;AVGPOST=0.9960;RSQ=0.4352;ERATE=0.0010;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58352715 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.2006;AVGPOST=0.9973;RSQ=0.9934;ERATE=0.0003;THETA=0.0008;AC=435;AN=2184 GT:DS:GL:BD 0.19917582 0 1 58352716 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1590;AVGPOST=0.9974;RSQ=0.9933;ERATE=0.0003;THETA=0.0037;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 58352745 . AC A 36 PASS INDEL;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4565;ERATE=0.0005;THETA=0.0058;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58352808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0074;AVGPOST=0.9996;RSQ=0.9763;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58352816 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58352913 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9236;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58352916 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.960;LDAF=0.0107;AVGPOST=0.9989;RSQ=0.9598;ERATE=0.0009;THETA=0.0008;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58352954 . G GA 18 PASS INDEL;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.5258;ERATE=0.0006;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58353028 . T TACTC 12707 PASS INDEL;BAVGPOST=0.971;BRSQ=0.951;LDAF=0.4987;AVGPOST=0.9798;RSQ=0.9724;ERATE=0.0004;THETA=0.0005;AC=1089;AN=2184 GT:DS:GL:BD 0.49862638 0 1 58353034 rs113341272 C CTAAG 124466 PASS INDEL;BAVGPOST=0.971;BRSQ=0.954;LDAF=0.5002;AVGPOST=0.9808;RSQ=0.9739;ERATE=0.0004;THETA=0.0004;AC=1091;AN=2184 GT:DS:GL:BD 0.49954212 0 1 58353035 rs58296098 T TAAGC 38427 PASS INDEL;BAVGPOST=0.969;BRSQ=0.947;LDAF=0.4854;AVGPOST=0.9618;RSQ=0.9462;ERATE=0.0082;THETA=0.0004;AC=1060;AN=2184 GT:DS:GL:BD 0.48534799 0 1 58353054 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58353163 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8746;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58353173 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9233;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58353229 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58353293 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0004;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58353346 . CTGTT C 758 PASS INDEL;BAVGPOST=0.998;BRSQ=0.790;LDAF=0.0061;AVGPOST=0.9985;RSQ=0.8957;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58353372 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0169;AVGPOST=0.9968;RSQ=0.9219;ERATE=0.0003;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 58353378 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.698;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7884;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58353453 . G GAA 1222 PASS INDEL;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0057;AVGPOST=0.9988;RSQ=0.9111;ERATE=0.0004;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58353634 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7651;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58353641 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58353696 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.4798;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58353721 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0065;AVGPOST=0.9997;RSQ=0.9798;ERATE=0.0003;THETA=0.0022;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58353786 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0309;AVGPOST=0.9985;RSQ=0.9839;ERATE=0.0004;THETA=0.0004;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 58353789 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8861;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58353887 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0021;AVGPOST=0.9971;RSQ=0.4848;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58353946 . CCGAGA C 160 PASS INDEL;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0084;AVGPOST=0.9947;RSQ=0.7322;ERATE=0.0014;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58354027 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7787;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58354181 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58354217 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.7028;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58354237 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.6288;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58354447 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.5167;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58354576 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.9054;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58354578 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7374;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58354614 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58354674 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58354729 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0017;AVGPOST=0.9995;RSQ=0.8729;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58354766 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0040;AVGPOST=0.9987;RSQ=0.8801;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58354815 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9323;ERATE=0.0003;THETA=0.0040;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58354826 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5253;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58354929 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0135;AVGPOST=0.9996;RSQ=0.9870;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 58354975 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9690;ERATE=0.0003;THETA=0.0040;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58355088 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0140;AVGPOST=0.9995;RSQ=0.9824;ERATE=0.0004;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58355173 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0096;AVGPOST=0.9990;RSQ=0.9691;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58355175 . T TA 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0020;AVGPOST=0.9976;RSQ=0.5299;ERATE=0.0005;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58355420 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6009;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58355478 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7158;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58355553 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6802;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58355572 rs68120488 G GGC 459 PASS INDEL;BAVGPOST=0.961;BRSQ=0.507;LDAF=0.0693;AVGPOST=0.9227;RSQ=0.5321;ERATE=0.0059;THETA=0.0003;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 58355577 . G GC 126 PASS INDEL;BAVGPOST=0.986;BRSQ=0.291;LDAF=0.0205;AVGPOST=0.9664;RSQ=0.3474;ERATE=0.0020;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58355632 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8854;ERATE=0.0006;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58355684 . AAC A 55 PASS INDEL;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5536;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58355718 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8830;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58355724 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0087;AVGPOST=0.9981;RSQ=0.9109;ERATE=0.0004;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58355726 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9741;ERATE=0.0003;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58355771 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=0.9994;RSQ=0.9598;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58355909 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.633;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6094;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58355969 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1473;AVGPOST=0.9988;RSQ=0.9962;ERATE=0.0004;THETA=0.0006;AC=321;AN=2184 GT:DS:GL:BD 0.14697802 0 1 58355975 . T TG 18 PASS INDEL;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5743;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58356047 . C CCCAT 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5888;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58356184 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58356204 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0038;AVGPOST=0.9985;RSQ=0.8434;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58356480 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0119;AVGPOST=0.9996;RSQ=0.9851;ERATE=0.0003;THETA=0.0002;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58356770 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.636;LDAF=0.0089;AVGPOST=0.9915;RSQ=0.6468;ERATE=0.0011;THETA=0.0010;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58356887 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0048;AVGPOST=0.9996;RSQ=0.9631;ERATE=0.0004;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58356911 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6195;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58356961 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5938;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58357036 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0120;AVGPOST=0.9998;RSQ=0.9909;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58357076 . TTGG T 145 PASS INDEL;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0026;AVGPOST=0.9962;RSQ=0.4751;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58357262 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.988;LDAF=0.1498;AVGPOST=0.9975;RSQ=0.9931;ERATE=0.0006;THETA=0.0006;AC=326;AN=2184 GT:DS:GL:BD 0.14926741 0 1 58357285 . GC G 317 PASS INDEL;BAVGPOST=0.998;BRSQ=0.904;LDAF=0.0077;AVGPOST=0.9991;RSQ=0.9459;ERATE=0.0004;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58357417 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5300;AVGPOST=0.9963;RSQ=0.9937;ERATE=0.0004;THETA=0.0013;AC=1156;AN=2184 GT:DS:GL:BD 0.52930403 1 1 58357505 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.708;LDAF=0.0039;AVGPOST=0.9969;RSQ=0.6479;ERATE=0.0006;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58357609 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.5682;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58357631 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0303;AVGPOST=0.9991;RSQ=0.9917;ERATE=0.0003;THETA=0.0004;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 58357648 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7853;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58357705 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58357834 rs59053073 G GTCT 3889 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0220;AVGPOST=0.9980;RSQ=0.9675;ERATE=0.0004;THETA=0.0003;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 58357854 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8470;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58357875 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0489;AVGPOST=0.9977;RSQ=0.9804;ERATE=0.0003;THETA=0.0004;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 58358048 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9682;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58358076 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6493;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58358141 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6029;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58358145 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0125;AVGPOST=0.9989;RSQ=0.9741;ERATE=0.0003;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58358172 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.750;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58358212 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58358226 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.818;LDAF=0.0041;AVGPOST=0.9978;RSQ=0.8407;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58358258 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.8054;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58358335 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8656;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58358353 . T TG 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4945;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58358503 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5240;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58358670 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6025;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58358700 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7703;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58358858 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0402;AVGPOST=0.9979;RSQ=0.9834;ERATE=0.0003;THETA=0.0004;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 58358884 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0253;AVGPOST=0.9996;RSQ=0.9927;ERATE=0.0003;THETA=0.0006;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 58359066 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58359107 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.847;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.9224;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58359310 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.5545;AVGPOST=0.9970;RSQ=0.9951;ERATE=0.0006;THETA=0.0004;AC=1208;AN=2184 GT:DS:GL:BD 0.55311358 1 1 58359383 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6520;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58359451 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9664;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58359551 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=0.9989;RSQ=0.9495;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58359598 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0696;AVGPOST=0.9971;RSQ=0.9882;ERATE=0.0005;THETA=0.0011;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 58359650 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0026;AVGPOST=0.9976;RSQ=0.6870;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58359668 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0028;AVGPOST=0.9996;RSQ=0.9314;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58359691 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8284;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58359704 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.590;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.7433;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58359768 rs5774377 AC A 1014 PASS INDEL;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0112;AVGPOST=0.9978;RSQ=0.9274;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58359778 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58359863 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0069;AVGPOST=0.9990;RSQ=0.9482;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58359865 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9640;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58359896 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1546;AVGPOST=0.9993;RSQ=0.9976;ERATE=0.0003;THETA=0.0003;AC=337;AN=2184 GT:DS:GL:BD 0.15430403 0 1 58359914 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58359927 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0120;AVGPOST=0.9998;RSQ=0.9909;ERATE=0.0003;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58360004 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0034;AVGPOST=0.9983;RSQ=0.8382;ERATE=0.0003;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58360035 rs75779489 CAG C 412 PASS INDEL;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.7845;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58360091 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0070;AVGPOST=0.9997;RSQ=0.9811;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58360111 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1555;AVGPOST=0.9995;RSQ=0.9983;ERATE=0.0004;THETA=0.0003;AC=339;AN=2184 GT:DS:GL:BD 0.15521978 0 1 58360150 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9522;ERATE=0.0003;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58360156 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58360319 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6978;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58360339 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5559;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58360392 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9559;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58360409 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0122;AVGPOST=0.9994;RSQ=0.9763;ERATE=0.0003;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58360413 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0237;AVGPOST=0.9998;RSQ=0.9958;ERATE=0.0003;THETA=0.0002;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 58360413 . GC G 10 PASS INDEL;BAVGPOST=0.998;BRSQ=0.836;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5681;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58360559 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58360565 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1557;AVGPOST=0.9985;RSQ=0.9957;ERATE=0.0003;THETA=0.0004;AC=339;AN=2184 GT:DS:GL:BD 0.15521978 0 1 58360568 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7577;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58360880 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8182;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58360933 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0050;AVGPOST=0.9990;RSQ=0.9082;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58360948 . A AT 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4787;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58361066 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5802;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58361116 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9571;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58361292 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.956;LDAF=0.1861;AVGPOST=0.9873;RSQ=0.9708;ERATE=0.0003;THETA=0.0003;AC=405;AN=2184 GT:DS:GL:BD 0.18543956 0 1 58361293 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.955;LDAF=0.1863;AVGPOST=0.9863;RSQ=0.9683;ERATE=0.0003;THETA=0.0007;AC=408;AN=2184 GT:DS:GL:BD 0.18681319 0 1 58361327 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0080;AVGPOST=0.9995;RSQ=0.9774;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58361347 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5979;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58361527 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0004;AVGPOST=0.9995;RSQ=0.4829;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 58361567 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1931;AVGPOST=0.9976;RSQ=0.9938;ERATE=0.0004;THETA=0.0001;AC=420;AN=2184 GT:DS:GL:BD 0.19230770 0 1 58361569 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0046;AVGPOST=0.9998;RSQ=0.9779;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58361620 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58361638 . C CT 2083 PASS INDEL;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0123;AVGPOST=0.9990;RSQ=0.9650;ERATE=0.0003;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58361656 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5817;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58361665 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7091;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58361713 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0035;AVGPOST=0.9993;RSQ=0.9322;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58361739 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58361880 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58361885 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2106;AVGPOST=0.9990;RSQ=0.9974;ERATE=0.0003;THETA=0.0002;AC=459;AN=2184 GT:DS:GL:BD 0.21016483 0 1 58361954 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0138;AVGPOST=0.9996;RSQ=0.9879;ERATE=0.0004;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58361959 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9888;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58362038 . TATGCTTGTCA T 480 PASS INDEL;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9524;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58362041 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.750;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5199;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58362063 . AT A 316 PASS INDEL;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0047;AVGPOST=0.9953;RSQ=0.6630;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58362107 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0077;AVGPOST=0.9990;RSQ=0.9549;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58362123 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1477;AVGPOST=0.9981;RSQ=0.9938;ERATE=0.0004;THETA=0.0003;AC=321;AN=2184 GT:DS:GL:BD 0.14697802 0 1 58362256 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5694;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58362291 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0120;AVGPOST=0.9998;RSQ=0.9909;ERATE=0.0003;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58362318 . G GCAGAGAT 1142 PASS INDEL;BAVGPOST=0.998;BRSQ=0.808;LDAF=0.0076;AVGPOST=0.9991;RSQ=0.9468;ERATE=0.0004;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58362364 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0040;AVGPOST=0.9992;RSQ=0.9038;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58362395 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2998;AVGPOST=0.9971;RSQ=0.9943;ERATE=0.0004;THETA=0.0007;AC=654;AN=2184 GT:DS:GL:BD 0.29945055 0 1 58362494 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8259;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58362543 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0126;AVGPOST=0.9994;RSQ=0.9787;ERATE=0.0004;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58362560 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0032;AVGPOST=0.9995;RSQ=0.9288;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58362766 . TA T 171 PASS INDEL;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0041;AVGPOST=0.9991;RSQ=0.8859;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58362833 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0056;AVGPOST=0.9997;RSQ=0.9805;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58362879 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58362881 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0029;AVGPOST=0.9987;RSQ=0.8388;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58363004 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9798;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58363019 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.694;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58363108 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1942;AVGPOST=0.9970;RSQ=0.9928;ERATE=0.0004;THETA=0.0006;AC=422;AN=2184 GT:DS:GL:BD 0.19322345 0 1 58363125 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7220;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58363289 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.945;LDAF=0.0118;AVGPOST=0.9997;RSQ=0.9889;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58363303 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0124;AVGPOST=0.9989;RSQ=0.9627;ERATE=0.0003;THETA=0.0002;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58363321 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7518;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58363323 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58363398 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0125;AVGPOST=0.9998;RSQ=0.9919;ERATE=0.0003;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58363401 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9936;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58363417 . T TA 300 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9429;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58363475 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0029;AVGPOST=0.9989;RSQ=0.8349;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58363488 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58363490 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0121;AVGPOST=0.9994;RSQ=0.9745;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58363656 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2106;AVGPOST=0.9989;RSQ=0.9969;ERATE=0.0004;THETA=0.0009;AC=459;AN=2184 GT:DS:GL:BD 0.21016483 0 1 58363815 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8400;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58363825 . TA T 24 PASS INDEL;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58363911 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58363980 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0119;AVGPOST=0.9995;RSQ=0.9819;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58364227 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0111;AVGPOST=0.9976;RSQ=0.9169;ERATE=0.0003;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58364237 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58364268 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0120;AVGPOST=0.9997;RSQ=0.9889;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58364304 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5892;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58364306 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0398;AVGPOST=0.9996;RSQ=0.9954;ERATE=0.0003;THETA=0.0005;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 58364311 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6262;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58364333 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.976;LDAF=0.1991;AVGPOST=0.9964;RSQ=0.9905;ERATE=0.0008;THETA=0.0004;AC=432;AN=2184 GT:DS:GL:BD 0.19780220 0 1 58364355 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4947;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58364362 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0141;AVGPOST=0.9992;RSQ=0.9804;ERATE=0.0003;THETA=0.0008;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58364377 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0120;AVGPOST=0.9999;RSQ=0.9944;ERATE=0.0003;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58364381 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0120;AVGPOST=0.9999;RSQ=0.9944;ERATE=0.0003;THETA=0.0010;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58364408 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58364444 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58364512 . TTG T 31 PASS INDEL;BAVGPOST=0.989;BRSQ=0.626;LDAF=0.0234;AVGPOST=0.9761;RSQ=0.5804;ERATE=0.0094;THETA=0.0004;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58364553 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.2013;AVGPOST=0.9957;RSQ=0.9892;ERATE=0.0010;THETA=0.0002;AC=436;AN=2184 GT:DS:GL:BD 0.19963370 0 1 58364602 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58365299 . GA G 958 PASS INDEL;BAVGPOST=0.997;BRSQ=0.836;LDAF=0.0105;AVGPOST=0.9953;RSQ=0.8424;ERATE=0.0004;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58365396 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1506;AVGPOST=0.9977;RSQ=0.9933;ERATE=0.0005;THETA=0.0002;AC=328;AN=2184 GT:DS:GL:BD 0.15018316 0 1 58365434 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58365464 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0006;AVGPOST=0.9992;RSQ=0.4974;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58365483 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7547;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58365488 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8259;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58365540 . GA G 1361 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0121;AVGPOST=0.9995;RSQ=0.9799;ERATE=0.0004;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58365577 . GT G 1250 PASS INDEL;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0068;AVGPOST=0.9978;RSQ=0.8732;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58365614 . T TC 42 PASS INDEL;BAVGPOST=0.999;BRSQ=0.561;LDAF=0.0028;AVGPOST=0.9955;RSQ=0.4288;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58365985 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9544;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58365988 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8648;ERATE=0.0004;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58365994 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5241;AVGPOST=0.9971;RSQ=0.9955;ERATE=0.0004;THETA=0.0003;AC=1143;AN=2184 GT:DS:GL:BD 0.52335167 1 1 58366028 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.7890;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58366054 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9076;ERATE=0.0003;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58366224 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5554;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58366340 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58366353 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.6429;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58366504 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58366520 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8664;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58366566 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7109;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58366595 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8057;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58366680 . AAGT A 10617 PASS INDEL;BAVGPOST=0.971;BRSQ=0.882;LDAF=0.1259;AVGPOST=0.9735;RSQ=0.9256;ERATE=0.0006;THETA=0.0005;AC=274;AN=2184 GT:DS:GL:BD 0.12545788 0 1 58366682 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.952;BRSQ=0.753;LDAF=0.0978;AVGPOST=0.9587;RSQ=0.8499;ERATE=0.0004;THETA=0.0002;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 58366685 . CTTT C 9958 PASS INDEL;BAVGPOST=0.971;BRSQ=0.883;LDAF=0.1247;AVGPOST=0.9751;RSQ=0.9302;ERATE=0.0004;THETA=0.0002;AC=275;AN=2184 GT:DS:GL:BD 0.12591575 0 1 58366771 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6454;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58366856 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0135;AVGPOST=0.9995;RSQ=0.9850;ERATE=0.0004;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 58366939 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.985;LDAF=0.1339;AVGPOST=0.9925;RSQ=0.9759;ERATE=0.0005;THETA=0.0002;AC=289;AN=2184 GT:DS:GL:BD 0.13232601 0 1 58366970 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0039;AVGPOST=0.9984;RSQ=0.8287;ERATE=0.0005;THETA=0.0019;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58366994 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9670;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58367019 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8410;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58367071 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0036;AVGPOST=0.9984;RSQ=0.8393;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58367147 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7921;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58367209 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1481;AVGPOST=0.9988;RSQ=0.9965;ERATE=0.0003;THETA=0.0002;AC=323;AN=2184 GT:DS:GL:BD 0.14789377 0 1 58367209 . CAAAT C 134 PASS INDEL;BAVGPOST=1.000;BRSQ=0.691;LDAF=0.0020;AVGPOST=0.9969;RSQ=0.3611;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58367236 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.2312;AVGPOST=0.9974;RSQ=0.9937;ERATE=0.0007;THETA=0.0002;AC=503;AN=2184 GT:DS:GL:BD 0.23031135 0 1 58367515 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0032;AVGPOST=0.9998;RSQ=0.9663;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58367519 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0395;AVGPOST=0.9995;RSQ=0.9948;ERATE=0.0004;THETA=0.0005;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 58367531 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8448;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58367560 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58367612 . AAAAC A 617 PASS INDEL;BAVGPOST=0.997;BRSQ=0.826;LDAF=0.0087;AVGPOST=0.9938;RSQ=0.7130;ERATE=0.0012;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58367620 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.889;LDAF=0.0106;AVGPOST=0.9981;RSQ=0.9324;ERATE=0.0003;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58367635 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0069;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58367643 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2001;AVGPOST=0.9985;RSQ=0.9965;ERATE=0.0003;THETA=0.0004;AC=436;AN=2184 GT:DS:GL:BD 0.19963370 0 1 58367691 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1967;AVGPOST=0.9980;RSQ=0.9953;ERATE=0.0004;THETA=0.0003;AC=427;AN=2184 GT:DS:GL:BD 0.19551282 0 1 58367733 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.861;LDAF=0.0247;AVGPOST=0.9931;RSQ=0.8966;ERATE=0.0003;THETA=0.0006;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 58367770 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1536;AVGPOST=0.9964;RSQ=0.9888;ERATE=0.0006;THETA=0.0003;AC=332;AN=2184 GT:DS:GL:BD 0.15201466 0 1 58367863 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1490;AVGPOST=0.9991;RSQ=0.9972;ERATE=0.0003;THETA=0.0004;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 58367864 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.724;LDAF=0.0028;AVGPOST=0.9994;RSQ=0.8937;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58367973 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0309;AVGPOST=0.9994;RSQ=0.9906;ERATE=0.0004;THETA=0.0004;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 58368024 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1551;AVGPOST=0.9975;RSQ=0.9924;ERATE=0.0005;THETA=0.0005;AC=338;AN=2184 GT:DS:GL:BD 0.15476191 0 1 58368118 rs111518079 GA G 26530 PASS INDEL;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.1885;AVGPOST=0.9982;RSQ=0.9953;ERATE=0.0003;THETA=0.0003;AC=409;AN=2184 GT:DS:GL:BD 0.18727106 0 1 58368204 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1535;AVGPOST=0.9989;RSQ=0.9969;ERATE=0.0004;THETA=0.0002;AC=335;AN=2184 GT:DS:GL:BD 0.15338828 0 1 58368216 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.720;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5353;ERATE=0.0006;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58368224 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58368336 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0394;AVGPOST=0.9998;RSQ=0.9979;ERATE=0.0003;THETA=0.0006;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 58368400 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0341;AVGPOST=0.9994;RSQ=0.9935;ERATE=0.0004;THETA=0.0004;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 58368405 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.982;LDAF=0.5301;AVGPOST=0.9841;RSQ=0.9776;ERATE=0.0034;THETA=0.0006;AC=1152;AN=2184 GT:DS:GL:BD 0.52747256 1 1 58368458 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.7089;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58368477 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.583;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58368481 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0270;AVGPOST=0.9999;RSQ=0.9985;ERATE=0.0003;THETA=0.0035;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 58368525 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.8025;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58368541 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.5217;AVGPOST=0.9957;RSQ=0.9938;ERATE=0.0006;THETA=0.0002;AC=1138;AN=2184 GT:DS:GL:BD 0.52106225 1 1 58368574 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0119;AVGPOST=0.9997;RSQ=0.9884;ERATE=0.0003;THETA=0.0043;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58368594 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58368596 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1520;AVGPOST=0.9974;RSQ=0.9919;ERATE=0.0009;THETA=0.0015;AC=331;AN=2184 GT:DS:GL:BD 0.15155677 0 1 58368641 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.748;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7516;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58368659 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.4683;ERATE=0.0005;THETA=0.0088;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58368684 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0118;AVGPOST=0.9996;RSQ=0.9872;ERATE=0.0003;THETA=0.0002;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58368694 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7744;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58368805 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.1593;AVGPOST=0.9981;RSQ=0.9939;ERATE=0.0007;THETA=0.0006;AC=347;AN=2184 GT:DS:GL:BD 0.15888278 0 1 58368842 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.855;LDAF=0.0096;AVGPOST=0.9979;RSQ=0.9038;ERATE=0.0005;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58368843 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.781;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.4152;ERATE=0.0004;THETA=0.0035;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58368922 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.7813;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58368990 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0026;AVGPOST=0.9990;RSQ=0.8580;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58369027 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1585;AVGPOST=0.9994;RSQ=0.9980;ERATE=0.0003;THETA=0.0021;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 58369055 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8462;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58369303 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0205;AVGPOST=0.9999;RSQ=0.9972;ERATE=0.0003;THETA=0.0005;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 58369311 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0210;AVGPOST=0.9991;RSQ=0.9854;ERATE=0.0003;THETA=0.0006;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 58369339 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.4728;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 58369362 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0206;AVGPOST=0.9999;RSQ=0.9972;ERATE=0.0003;THETA=0.0006;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 58369478 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5541;AVGPOST=0.9987;RSQ=0.9981;ERATE=0.0004;THETA=0.0003;AC=1208;AN=2184 GT:DS:GL:BD 0.55311358 1 1 58369662 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1899;AVGPOST=0.9989;RSQ=0.9972;ERATE=0.0003;THETA=0.0004;AC=414;AN=2184 GT:DS:GL:BD 0.18956044 0 1 58369680 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7674;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58369685 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4834;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58369687 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0207;AVGPOST=0.9998;RSQ=0.9954;ERATE=0.0003;THETA=0.0004;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 58369702 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6817;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58370017 . T TG 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6809;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58370026 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0329;AVGPOST=0.9997;RSQ=0.9961;ERATE=0.0003;THETA=0.0004;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 58370098 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5709;AVGPOST=0.9980;RSQ=0.9965;ERATE=0.0005;THETA=0.0004;AC=1244;AN=2184 GT:DS:GL:BD 0.56959707 1 1 58370129 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9215;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58370201 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1909;AVGPOST=0.9985;RSQ=0.9962;ERATE=0.0004;THETA=0.0003;AC=417;AN=2184 GT:DS:GL:BD 0.19093406 0 1 58370356 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0203;AVGPOST=0.9996;RSQ=0.9928;ERATE=0.0003;THETA=0.0004;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 58370367 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7702;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58370412 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0297;AVGPOST=0.9995;RSQ=0.9929;ERATE=0.0003;THETA=0.0004;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 58370438 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58370439 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58370506 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0040;AVGPOST=0.9989;RSQ=0.8890;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58370654 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1781;AVGPOST=0.9992;RSQ=0.9978;ERATE=0.0004;THETA=0.0002;AC=388;AN=2184 GT:DS:GL:BD 0.17765568 0 1 58370739 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0319;AVGPOST=0.9996;RSQ=0.9952;ERATE=0.0003;THETA=0.0006;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 58370750 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0212;AVGPOST=0.9989;RSQ=0.9840;ERATE=0.0003;THETA=0.0003;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 58370808 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5384;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58370853 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.774;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8538;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58370947 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1574;AVGPOST=0.9962;RSQ=0.9892;ERATE=0.0007;THETA=0.0007;AC=342;AN=2184 GT:DS:GL:BD 0.15659341 0 1 58370988 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0216;AVGPOST=0.9998;RSQ=0.9964;ERATE=0.0003;THETA=0.0010;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 58371042 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.981;LDAF=0.0893;AVGPOST=0.9968;RSQ=0.9868;ERATE=0.0003;THETA=0.0022;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 58371104 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58371105 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.847;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.8142;ERATE=0.0004;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58371181 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9830;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58371226 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58371285 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58371288 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.991;LDAF=0.4450;AVGPOST=0.9923;RSQ=0.9883;ERATE=0.0005;THETA=0.0015;AC=969;AN=2184 GT:DS:GL:BD 0.44368133 0 1 58371309 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1897;AVGPOST=0.9979;RSQ=0.9949;ERATE=0.0003;THETA=0.0074;AC=414;AN=2184 GT:DS:GL:BD 0.18956044 0 1 58371496 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0170;AVGPOST=0.9984;RSQ=0.9656;ERATE=0.0005;THETA=0.0058;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 58371516 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.765;LDAF=0.0024;AVGPOST=0.9984;RSQ=0.7695;ERATE=0.0004;THETA=0.0022;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58371579 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0036;AVGPOST=0.9999;RSQ=0.9836;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58371714 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0040;AVGPOST=0.9981;RSQ=0.8184;ERATE=0.0005;THETA=0.0067;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58371727 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.987;LDAF=0.1045;AVGPOST=0.9952;RSQ=0.9825;ERATE=0.0003;THETA=0.0028;AC=226;AN=2184 GT:DS:GL:BD 0.10347985 0 1 58371768 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0030;AVGPOST=0.9984;RSQ=0.7782;ERATE=0.0005;THETA=0.0016;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58371840 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0161;AVGPOST=0.9998;RSQ=0.9930;ERATE=0.0003;THETA=0.0016;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 58371854 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0127;AVGPOST=0.9993;RSQ=0.9770;ERATE=0.0004;THETA=0.0011;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58371912 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0075;AVGPOST=0.9996;RSQ=0.9768;ERATE=0.0003;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58372040 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1486;AVGPOST=0.9955;RSQ=0.9872;ERATE=0.0004;THETA=0.0036;AC=324;AN=2184 GT:DS:GL:BD 0.14835165 0 1 58372050 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.947;LDAF=0.0237;AVGPOST=0.9983;RSQ=0.9753;ERATE=0.0004;THETA=0.0003;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 58372240 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9824;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58372393 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.6576;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58372400 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0079;AVGPOST=0.9995;RSQ=0.9697;ERATE=0.0004;THETA=0.0020;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58372565 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8039;ERATE=0.0004;THETA=0.0059;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58372576 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0134;AVGPOST=0.9986;RSQ=0.9632;ERATE=0.0003;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 58372593 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0094;AVGPOST=0.9973;RSQ=0.8939;ERATE=0.0003;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58372762 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0111;AVGPOST=0.9995;RSQ=0.9784;ERATE=0.0004;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58372837 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.6243;AVGPOST=0.9968;RSQ=0.9943;ERATE=0.0007;THETA=0.0005;AC=1363;AN=2184 GT:DS:GL:BD 0.62408423 1 1 58372846 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.6054;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58372869 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0275;AVGPOST=0.9998;RSQ=0.9970;ERATE=0.0003;THETA=0.0004;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 58372949 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6233;AVGPOST=0.9984;RSQ=0.9971;ERATE=0.0003;THETA=0.0003;AC=1361;AN=2184 GT:DS:GL:BD 0.62316847 1 1 58373002 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0043;AVGPOST=0.9988;RSQ=0.8946;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58373054 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58373232 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7731;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58373239 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0277;AVGPOST=0.9995;RSQ=0.9926;ERATE=0.0003;THETA=0.0003;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 58373329 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58373340 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5714;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58373450 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.982;LDAF=0.1530;AVGPOST=0.9936;RSQ=0.9824;ERATE=0.0003;THETA=0.0002;AC=332;AN=2184 GT:DS:GL:BD 0.15201466 0 1 58373512 rs72407623 TTACA T 46346 PASS INDEL;BAVGPOST=0.990;BRSQ=0.983;LDAF=0.4332;AVGPOST=0.9884;RSQ=0.9821;ERATE=0.0011;THETA=0.0003;AC=948;AN=2184 GT:DS:GL:BD 0.43406594 0 1 58373531 . ATG A 206 PASS INDEL;BAVGPOST=0.938;BRSQ=0.695;LDAF=0.1045;AVGPOST=0.9372;RSQ=0.7620;ERATE=0.0024;THETA=0.0003;AC=218;AN=2184 GT:DS:GL:BD 0.09981685 0 1 58373548 rs35933816 TAC T 352 PASS INDEL;BAVGPOST=0.938;BRSQ=0.722;LDAF=0.1131;AVGPOST=0.9463;RSQ=0.8147;ERATE=0.0011;THETA=0.0005;AC=236;AN=2184 GT:DS:GL:BD 0.10805861 0 1 58373574 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0294;AVGPOST=0.9961;RSQ=0.9508;ERATE=0.0005;THETA=0.0003;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 58373696 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0041;AVGPOST=0.9993;RSQ=0.9295;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58373824 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0015;AVGPOST=0.9991;RSQ=0.7629;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58373872 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1606;AVGPOST=0.9993;RSQ=0.9976;ERATE=0.0003;THETA=0.0002;AC=350;AN=2184 GT:DS:GL:BD 0.16025642 0 1 58373941 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1551;AVGPOST=0.9992;RSQ=0.9975;ERATE=0.0004;THETA=0.0005;AC=338;AN=2184 GT:DS:GL:BD 0.15476191 0 1 58373980 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0284;AVGPOST=0.9999;RSQ=0.9985;ERATE=0.0003;THETA=0.0003;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 58373990 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0284;AVGPOST=0.9999;RSQ=0.9985;ERATE=0.0003;THETA=0.0006;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 58374027 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5187;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58374029 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5910;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58374090 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1543;AVGPOST=0.9982;RSQ=0.9955;ERATE=0.0004;THETA=0.0002;AC=336;AN=2184 GT:DS:GL:BD 0.15384616 0 1 58374125 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58374278 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58374280 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58374289 rs66469556 AG A 36422 PASS INDEL;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4367;AVGPOST=0.9953;RSQ=0.9928;ERATE=0.0006;THETA=0.0002;AC=953;AN=2184 GT:DS:GL:BD 0.43635532 0 1 58374291 . GC G 4349 PASS INDEL;BAVGPOST=0.946;BRSQ=0.901;LDAF=0.4077;AVGPOST=0.9479;RSQ=0.9212;ERATE=0.0057;THETA=0.0003;AC=913;AN=2184 GT:DS:GL:BD 0.41804031 0 1 58374317 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4327;AVGPOST=0.9973;RSQ=0.9957;ERATE=0.0006;THETA=0.0003;AC=944;AN=2184 GT:DS:GL:BD 0.43223444 0 1 58374513 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58374665 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0121;AVGPOST=0.9993;RSQ=0.9777;ERATE=0.0003;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58374787 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0042;AVGPOST=0.9997;RSQ=0.9637;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58374826 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1881;AVGPOST=0.9989;RSQ=0.9974;ERATE=0.0005;THETA=0.0002;AC=411;AN=2184 GT:DS:GL:BD 0.18818681 0 1 58374934 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6983;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58374976 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0059;AVGPOST=0.9992;RSQ=0.9549;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58374984 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58375090 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5491;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58375100 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.817;LDAF=0.0036;AVGPOST=0.9993;RSQ=0.9032;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58375217 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.1582;AVGPOST=0.9968;RSQ=0.9914;ERATE=0.0004;THETA=0.0006;AC=347;AN=2184 GT:DS:GL:BD 0.15888278 0 1 58375612 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0278;AVGPOST=0.9997;RSQ=0.9956;ERATE=0.0003;THETA=0.0006;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 58375834 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.968;LDAF=0.0294;AVGPOST=0.9991;RSQ=0.9895;ERATE=0.0003;THETA=0.0004;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 58375835 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0143;AVGPOST=0.9991;RSQ=0.9780;ERATE=0.0003;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58375894 . AC A 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.762;LDAF=0.0018;AVGPOST=0.9975;RSQ=0.4798;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58375966 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.4549;AVGPOST=0.9980;RSQ=0.9968;ERATE=0.0006;THETA=0.0004;AC=992;AN=2184 GT:DS:GL:BD 0.45421246 0 1 58375990 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7742;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58376014 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6242;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58376134 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58376151 . A AT 96 PASS INDEL;BAVGPOST=0.992;BRSQ=0.580;LDAF=0.0141;AVGPOST=0.9827;RSQ=0.5388;ERATE=0.0026;THETA=0.0020;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58376174 . TAACA T 39 PASS INDEL;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58376247 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6097;AVGPOST=0.9979;RSQ=0.9964;ERATE=0.0005;THETA=0.0005;AC=1331;AN=2184 GT:DS:GL:BD 0.60943222 1 1 58376252 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6495;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58376296 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8177;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58376305 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.6148;AVGPOST=0.9977;RSQ=0.9961;ERATE=0.0004;THETA=0.0003;AC=1342;AN=2184 GT:DS:GL:BD 0.61446887 1 1 58376382 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58376411 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.5070;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58376445 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1804;AVGPOST=0.9989;RSQ=0.9969;ERATE=0.0004;THETA=0.0003;AC=393;AN=2184 GT:DS:GL:BD 0.17994505 0 1 58376532 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.9159;ERATE=0.0003;THETA=0.0027;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58376582 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0218;AVGPOST=0.9989;RSQ=0.9801;ERATE=0.0005;THETA=0.0004;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 58376594 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58376627 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0093;AVGPOST=0.9989;RSQ=0.9555;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58376747 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0029;AVGPOST=0.9992;RSQ=0.8871;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58376778 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1594;AVGPOST=0.9988;RSQ=0.9963;ERATE=0.0004;THETA=0.0003;AC=347;AN=2184 GT:DS:GL:BD 0.15888278 0 1 58376812 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58376867 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8842;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58376942 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58377027 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.745;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7607;ERATE=0.0004;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58377170 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8830;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58377182 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0159;AVGPOST=0.9975;RSQ=0.9430;ERATE=0.0003;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 58377199 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8120;ERATE=0.0004;THETA=0.0021;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58377240 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9717;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58377299 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.9551;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58377333 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0077;AVGPOST=0.9994;RSQ=0.9661;ERATE=0.0004;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58377402 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2699;AVGPOST=0.9993;RSQ=0.9984;ERATE=0.0003;THETA=0.0004;AC=588;AN=2184 GT:DS:GL:BD 0.26923078 0 1 58377621 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=0.9991;RSQ=0.9076;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58377713 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7394;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58377862 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58377948 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0038;AVGPOST=0.9994;RSQ=0.9400;ERATE=0.0003;THETA=0.0001;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58377996 . G GC 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4726;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58378019 rs35645037 G GA 19112 PASS INDEL;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1675;AVGPOST=0.9965;RSQ=0.9903;ERATE=0.0007;THETA=0.0015;AC=365;AN=2184 GT:DS:GL:BD 0.16712454 0 1 58378047 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7811;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58378185 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0393;AVGPOST=0.9983;RSQ=0.9840;ERATE=0.0004;THETA=0.0024;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 58378363 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0392;AVGPOST=0.9982;RSQ=0.9828;ERATE=0.0003;THETA=0.0005;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 58378368 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.4513;AVGPOST=0.9919;RSQ=0.9872;ERATE=0.0008;THETA=0.0006;AC=989;AN=2184 GT:DS:GL:BD 0.45283884 0 1 58378583 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.933;BRSQ=0.870;LDAF=0.5778;AVGPOST=0.9335;RSQ=0.8951;ERATE=0.0079;THETA=0.0002;AC=1288;AN=2184 GT:DS:GL:BD 0.58974361 1 1 58378651 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.925;LDAF=0.4215;AVGPOST=0.9206;RSQ=0.8783;ERATE=0.0178;THETA=0.0005;AC=930;AN=2184 GT:DS:GL:BD 0.42582417 0 1 58378850 . A AC 707 PASS INDEL;BAVGPOST=0.974;BRSQ=0.548;LDAF=0.0525;AVGPOST=0.9370;RSQ=0.4850;ERATE=0.0130;THETA=0.0006;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 58378880 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.763;BRSQ=0.653;LDAF=0.4234;AVGPOST=0.7726;RSQ=0.6832;ERATE=0.0241;THETA=0.0035;AC=963;AN=2184 GT:DS:GL:BD 0.44093406 0 1 58378915 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.746;BRSQ=0.600;LDAF=0.3431;AVGPOST=0.7648;RSQ=0.6393;ERATE=0.0275;THETA=0.0003;AC=693;AN=2184 GT:DS:GL:BD 0.31730768 0 1 58378999 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.601;LDAF=0.0049;AVGPOST=0.9959;RSQ=0.6849;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58379003 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.920;LDAF=0.0404;AVGPOST=0.9973;RSQ=0.9758;ERATE=0.0006;THETA=0.0031;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 58379016 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.521;LDAF=0.0069;AVGPOST=0.9936;RSQ=0.6159;ERATE=0.0011;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58379208 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.916;LDAF=0.1555;AVGPOST=0.9868;RSQ=0.9640;ERATE=0.0010;THETA=0.0004;AC=342;AN=2184 GT:DS:GL:BD 0.15659341 0 1 58379218 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.921;LDAF=0.0146;AVGPOST=0.9890;RSQ=0.7138;ERATE=0.0006;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 58379249 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.741;LDAF=0.0034;AVGPOST=0.9985;RSQ=0.8241;ERATE=0.0004;THETA=0.0036;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58379424 . AAAAC A 909 PASS INDEL;BAVGPOST=0.961;BRSQ=0.489;LDAF=0.0495;AVGPOST=0.9457;RSQ=0.5656;ERATE=0.0076;THETA=0.0011;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 58379448 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.806;LDAF=0.0727;AVGPOST=0.9653;RSQ=0.8327;ERATE=0.0003;THETA=0.0005;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 58379452 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.813;LDAF=0.0764;AVGPOST=0.9670;RSQ=0.8437;ERATE=0.0007;THETA=0.0003;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 58379579 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.866;LDAF=0.1477;AVGPOST=0.9851;RSQ=0.9559;ERATE=0.0007;THETA=0.0011;AC=331;AN=2184 GT:DS:GL:BD 0.15155677 0 1 58379664 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5703;ERATE=0.0004;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58379755 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.753;LDAF=0.0025;AVGPOST=0.9977;RSQ=0.6629;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58380001 . CA C 4348 PASS INDEL;BAVGPOST=0.998;BRSQ=0.974;LDAF=0.0330;AVGPOST=0.9984;RSQ=0.9811;ERATE=0.0004;THETA=0.0002;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 58380004 . AC A 215 PASS INDEL;BAVGPOST=0.985;BRSQ=0.816;LDAF=0.0600;AVGPOST=0.9655;RSQ=0.7564;ERATE=0.0012;THETA=0.0004;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 58380057 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7008;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58380100 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.834;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7245;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58380106 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.967;LDAF=0.1574;AVGPOST=0.9920;RSQ=0.9771;ERATE=0.0013;THETA=0.0002;AC=344;AN=2184 GT:DS:GL:BD 0.15750916 0 1 58380206 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.792;LDAF=0.0027;AVGPOST=0.9985;RSQ=0.7443;ERATE=0.0007;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58380297 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.744;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6244;ERATE=0.0003;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58380318 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1588;AVGPOST=0.9962;RSQ=0.9886;ERATE=0.0003;THETA=0.0003;AC=347;AN=2184 GT:DS:GL:BD 0.15888278 0 1 58380452 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.989;LDAF=0.4576;AVGPOST=0.9857;RSQ=0.9790;ERATE=0.0005;THETA=0.0038;AC=999;AN=2184 GT:DS:GL:BD 0.45741758 0 1 58380607 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0085;AVGPOST=0.9995;RSQ=0.9697;ERATE=0.0004;THETA=0.0104;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58380637 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9600;ERATE=0.0003;THETA=0.0030;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58380659 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0127;AVGPOST=0.9987;RSQ=0.9571;ERATE=0.0004;THETA=0.0067;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58380711 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.705;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6047;ERATE=0.0004;THETA=0.0073;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58380712 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.956;LDAF=0.1991;AVGPOST=0.9853;RSQ=0.9669;ERATE=0.0006;THETA=0.0186;AC=431;AN=2184 GT:DS:GL:BD 0.19734432 0 1 58380747 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.581;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5287;ERATE=0.0004;THETA=0.0239;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58380833 . A AC 20927 PASS INDEL;BAVGPOST=0.938;BRSQ=0.900;LDAF=0.6421;AVGPOST=0.9351;RSQ=0.9059;ERATE=0.0006;THETA=0.0018;AC=1416;AN=2184 GT:DS:GL:BD 0.64835167 1 1 58380836 rs11418611 C CT 63459 PASS INDEL;BAVGPOST=0.938;BRSQ=0.900;LDAF=0.6426;AVGPOST=0.9363;RSQ=0.9076;ERATE=0.0004;THETA=0.0150;AC=1415;AN=2184 GT:DS:GL:BD 0.64789379 1 1 58381002 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.650;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5229;ERATE=0.0003;THETA=0.0082;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58381041 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6075;ERATE=0.0003;THETA=0.0271;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58381223 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.820;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7855;ERATE=0.0006;THETA=0.0211;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58381232 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.659;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0231;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58381275 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.940;LDAF=0.0176;AVGPOST=0.9966;RSQ=0.9231;ERATE=0.0004;THETA=0.0138;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 58381292 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8450;ERATE=0.0004;THETA=0.0044;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58381399 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0003;AVGPOST=0.9994;RSQ=0.1995;ERATE=0.0004;THETA=0.0147;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 58381404 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0133;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58381414 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6107;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58381521 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.970;LDAF=0.1263;AVGPOST=0.9856;RSQ=0.9565;ERATE=0.0005;THETA=0.0079;AC=270;AN=2184 GT:DS:GL:BD 0.12362637 0 1 58381522 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.721;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7206;ERATE=0.0003;THETA=0.0222;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58381573 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6915;ERATE=0.0003;THETA=0.0059;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58381599 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9716;ERATE=0.0003;THETA=0.0028;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58381604 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.806;LDAF=0.0058;AVGPOST=0.9978;RSQ=0.8613;ERATE=0.0003;THETA=0.0117;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58381616 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0073;AVGPOST=0.9993;RSQ=0.9705;ERATE=0.0003;THETA=0.0027;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58381726 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.671;LDAF=0.0025;AVGPOST=0.9973;RSQ=0.6132;ERATE=0.0005;THETA=0.0035;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58381906 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0040;AVGPOST=0.9984;RSQ=0.8389;ERATE=0.0005;THETA=0.0038;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58381980 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.955;LDAF=0.6080;AVGPOST=0.9732;RSQ=0.9607;ERATE=0.0007;THETA=0.0007;AC=1331;AN=2184 GT:DS:GL:BD 0.60943222 1 1 58382030 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58382058 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9797;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58382077 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6172;ERATE=0.0003;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58382147 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58382165 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.950;LDAF=0.0173;AVGPOST=0.9982;RSQ=0.9648;ERATE=0.0003;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 58382187 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0048;AVGPOST=0.9990;RSQ=0.9088;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58382335 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.484;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.5561;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58382367 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.980;LDAF=0.1275;AVGPOST=0.9907;RSQ=0.9681;ERATE=0.0003;THETA=0.0003;AC=276;AN=2184 GT:DS:GL:BD 0.12637363 0 1 58382396 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.571;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3720;ERATE=0.0007;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58382487 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5223;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58382547 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0047;AVGPOST=0.9994;RSQ=0.9404;ERATE=0.0003;THETA=0.0013;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58382625 . A AC 895 PASS INDEL;BAVGPOST=0.995;BRSQ=0.867;LDAF=0.0109;AVGPOST=0.9984;RSQ=0.9354;ERATE=0.0004;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58382636 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.973;LDAF=0.1136;AVGPOST=0.9915;RSQ=0.9712;ERATE=0.0004;THETA=0.0009;AC=246;AN=2184 GT:DS:GL:BD 0.11263736 0 1 58382735 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0003;AVGPOST=0.9994;RSQ=0.3782;ERATE=0.0003;THETA=0.0016;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 58382874 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6273;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58382903 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0142;AVGPOST=0.9971;RSQ=0.9244;ERATE=0.0004;THETA=0.0014;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 58382987 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0046;AVGPOST=0.9998;RSQ=0.9764;ERATE=0.0003;THETA=0.0010;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58383004 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58383026 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.943;LDAF=0.1194;AVGPOST=0.9862;RSQ=0.9501;ERATE=0.0004;THETA=0.0010;AC=259;AN=2184 GT:DS:GL:BD 0.11858974 0 1 58383056 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58383077 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.8541;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58383302 . GT G 321 PASS INDEL;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0050;AVGPOST=0.9991;RSQ=0.9234;ERATE=0.0004;THETA=0.0011;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58383372 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9812;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58383379 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0034;AVGPOST=0.9990;RSQ=0.8812;ERATE=0.0005;THETA=0.0032;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58383446 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6337;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58383504 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.5748;ERATE=0.0004;THETA=0.0066;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58383595 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.758;LDAF=0.0034;AVGPOST=0.9984;RSQ=0.7853;ERATE=0.0004;THETA=0.0021;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58383780 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.548;LDAF=0.0189;AVGPOST=0.9767;RSQ=0.5199;ERATE=0.0027;THETA=0.0017;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58384016 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.977;LDAF=0.1278;AVGPOST=0.9916;RSQ=0.9727;ERATE=0.0007;THETA=0.0044;AC=277;AN=2184 GT:DS:GL:BD 0.12683150 0 1 58384148 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8735;ERATE=0.0004;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58384268 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.879;LDAF=0.0065;AVGPOST=0.9975;RSQ=0.8307;ERATE=0.0005;THETA=0.0063;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58384291 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9422;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58384299 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.436;LDAF=0.0019;AVGPOST=0.9974;RSQ=0.5279;ERATE=0.0003;THETA=0.0032;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58384321 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.971;LDAF=0.0938;AVGPOST=0.9908;RSQ=0.9578;ERATE=0.0005;THETA=0.0012;AC=203;AN=2184 GT:DS:GL:BD 0.09294872 0 1 58384352 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.697;LDAF=0.0046;AVGPOST=0.9938;RSQ=0.4859;ERATE=0.0007;THETA=0.0126;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58384483 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.889;LDAF=0.0925;AVGPOST=0.9737;RSQ=0.8907;ERATE=0.0005;THETA=0.0030;AC=196;AN=2184 GT:DS:GL:BD 0.08974359 0 1 58384495 . C CA 561 PASS INDEL;BAVGPOST=0.946;BRSQ=0.522;LDAF=0.1063;AVGPOST=0.8727;RSQ=0.4427;ERATE=0.0304;THETA=0.0086;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 58384789 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6624;ERATE=0.0004;THETA=0.0055;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58384861 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.5252;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58385133 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0014;AVGPOST=0.9994;RSQ=0.8249;ERATE=0.0003;THETA=0.0044;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58385137 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7915;ERATE=0.0003;THETA=0.0043;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58385187 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7921;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58385239 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9244;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58385248 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6933;ERATE=0.0003;THETA=0.0038;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58385309 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6881;ERATE=0.0005;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58385355 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0027;AVGPOST=0.9990;RSQ=0.8432;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58385646 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5052;ERATE=0.0004;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58385691 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5782;ERATE=0.0003;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58385733 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.983;LDAF=0.0810;AVGPOST=0.9957;RSQ=0.9806;ERATE=0.0004;THETA=0.0034;AC=174;AN=2184 GT:DS:GL:BD 0.07967033 0 1 58385772 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.4124;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58385817 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.729;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5650;ERATE=0.0004;THETA=0.0063;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58385847 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58385882 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0029;AVGPOST=0.9984;RSQ=0.7937;ERATE=0.0003;THETA=0.0016;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58385898 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7064;ERATE=0.0003;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58385902 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8259;ERATE=0.0003;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58385979 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.959;LDAF=0.0138;AVGPOST=0.9993;RSQ=0.9781;ERATE=0.0003;THETA=0.0007;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58386010 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.966;LDAF=0.1133;AVGPOST=0.9932;RSQ=0.9749;ERATE=0.0007;THETA=0.0048;AC=247;AN=2184 GT:DS:GL:BD 0.11309524 0 1 58386207 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5817;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58386247 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.5837;ERATE=0.0004;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58386270 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.6943;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58386273 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7476;ERATE=0.0003;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58386374 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0032;AVGPOST=0.9997;RSQ=0.9547;ERATE=0.0004;THETA=0.0060;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58386489 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.593;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7497;ERATE=0.0003;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58386556 . C CT 520 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0026;AVGPOST=0.9988;RSQ=0.8300;ERATE=0.0004;THETA=0.0041;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58386623 rs36062180 CT C 15065 PASS INDEL;BAVGPOST=0.997;BRSQ=0.986;LDAF=0.1151;AVGPOST=0.9946;RSQ=0.9819;ERATE=0.0004;THETA=0.0012;AC=251;AN=2184 GT:DS:GL:BD 0.11492674 0 1 58386727 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.984;LDAF=0.1147;AVGPOST=0.9930;RSQ=0.9766;ERATE=0.0007;THETA=0.0006;AC=248;AN=2184 GT:DS:GL:BD 0.11355311 0 1 58386728 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6151;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58386732 . GAATT G 89 PASS INDEL;BAVGPOST=0.999;BRSQ=0.602;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.4925;ERATE=0.0005;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58386785 . TG T 563 PASS INDEL;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0062;AVGPOST=0.9960;RSQ=0.7870;ERATE=0.0004;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58386848 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0042;AVGPOST=0.9997;RSQ=0.9639;ERATE=0.0003;THETA=0.0051;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58387094 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.972;LDAF=0.6574;AVGPOST=0.9807;RSQ=0.9710;ERATE=0.0010;THETA=0.0100;AC=1435;AN=2184 GT:DS:GL:BD 0.65705127 1 1 58387107 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0155;AVGPOST=0.9984;RSQ=0.9642;ERATE=0.0003;THETA=0.0013;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58387276 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58387519 . C CAA 46 PASS INDEL;BAVGPOST=0.999;BRSQ=0.581;LDAF=0.0049;AVGPOST=0.9920;RSQ=0.3493;ERATE=0.0005;THETA=0.0133;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58387534 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.834;LDAF=0.0117;AVGPOST=0.9981;RSQ=0.9339;ERATE=0.0005;THETA=0.0120;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58387569 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9927;ERATE=0.0003;THETA=0.0112;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58387703 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0020;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58387709 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0044;AVGPOST=0.9991;RSQ=0.9226;ERATE=0.0003;THETA=0.0038;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58387711 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.5800;AVGPOST=0.9901;RSQ=0.9856;ERATE=0.0010;THETA=0.0108;AC=1268;AN=2184 GT:DS:GL:BD 0.58058608 1 1 58387729 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0028;AVGPOST=0.9995;RSQ=0.9195;ERATE=0.0004;THETA=0.0015;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58387807 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.985;LDAF=0.5101;AVGPOST=0.9902;RSQ=0.9861;ERATE=0.0017;THETA=0.0009;AC=1114;AN=2184 GT:DS:GL:BD 0.51007324 1 1 58387849 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6057;ERATE=0.0003;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58388045 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58388099 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6772;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58388101 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58388139 . GGAAGCT G 204 PASS INDEL;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0004;THETA=0.0074;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58388241 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0317;AVGPOST=0.9997;RSQ=0.9959;ERATE=0.0003;THETA=0.0020;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 58388361 rs111920870 C CA 34 PASS INDEL;BAVGPOST=0.995;BRSQ=0.499;LDAF=0.0128;AVGPOST=0.9829;RSQ=0.4683;ERATE=0.0016;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58388379 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0055;AVGPOST=0.9970;RSQ=0.7887;ERATE=0.0004;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58388382 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.986;LDAF=0.1868;AVGPOST=0.9949;RSQ=0.9861;ERATE=0.0007;THETA=0.0009;AC=410;AN=2184 GT:DS:GL:BD 0.18772894 0 1 58388440 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.577;LDAF=0.0063;AVGPOST=0.9951;RSQ=0.6873;ERATE=0.0008;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58388467 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.944;LDAF=0.1578;AVGPOST=0.9932;RSQ=0.9791;ERATE=0.0011;THETA=0.0007;AC=344;AN=2184 GT:DS:GL:BD 0.15750916 0 1 58388513 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.939;BRSQ=0.805;LDAF=0.1823;AVGPOST=0.9645;RSQ=0.9165;ERATE=0.0022;THETA=0.0004;AC=394;AN=2184 GT:DS:GL:BD 0.18040293 0 1 58388572 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1569;AVGPOST=0.9975;RSQ=0.9926;ERATE=0.0003;THETA=0.0044;AC=344;AN=2184 GT:DS:GL:BD 0.15750916 0 1 58388756 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.860;LDAF=0.0043;AVGPOST=0.9986;RSQ=0.8778;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58388758 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.863;LDAF=0.0033;AVGPOST=0.9970;RSQ=0.6616;ERATE=0.0005;THETA=0.0021;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58388867 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5396;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58388876 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58388894 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8611;ERATE=0.0003;THETA=0.0024;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58388899 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.738;LDAF=0.0018;AVGPOST=0.9995;RSQ=0.8855;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58388984 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.816;LDAF=0.0029;AVGPOST=0.9982;RSQ=0.7695;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58389061 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6555;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58389323 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0325;AVGPOST=0.9999;RSQ=0.9987;ERATE=0.0003;THETA=0.0005;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 58389760 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58389816 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3145;AVGPOST=0.9984;RSQ=0.9974;ERATE=0.0004;THETA=0.0006;AC=686;AN=2184 GT:DS:GL:BD 0.31410256 0 1 58389870 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0318;AVGPOST=0.9995;RSQ=0.9936;ERATE=0.0003;THETA=0.0003;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 58389926 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0031;AVGPOST=0.9992;RSQ=0.8931;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58389945 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0057;AVGPOST=0.9994;RSQ=0.9582;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58390082 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7971;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58390193 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.958;LDAF=0.1913;AVGPOST=0.9947;RSQ=0.9863;ERATE=0.0007;THETA=0.0002;AC=419;AN=2184 GT:DS:GL:BD 0.19184981 0 1 58390208 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.728;LDAF=0.0030;AVGPOST=0.9972;RSQ=0.5957;ERATE=0.0006;THETA=0.0018;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58390227 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.938;BRSQ=0.895;LDAF=0.4985;AVGPOST=0.9254;RSQ=0.8917;ERATE=0.0117;THETA=0.0002;AC=1121;AN=2184 GT:DS:GL:BD 0.51327837 1 1 58390261 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6246;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58390289 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.962;LDAF=0.1930;AVGPOST=0.9889;RSQ=0.9725;ERATE=0.0010;THETA=0.0002;AC=422;AN=2184 GT:DS:GL:BD 0.19322345 0 1 58390296 . T TA 15684 PASS INDEL;BAVGPOST=0.956;BRSQ=0.920;LDAF=0.3187;AVGPOST=0.9803;RSQ=0.9684;ERATE=0.0008;THETA=0.0007;AC=706;AN=2184 GT:DS:GL:BD 0.32326007 0 1 58390298 rs56001231 A AAT 17899 PASS INDEL;BAVGPOST=0.952;BRSQ=0.914;LDAF=0.3263;AVGPOST=0.9563;RSQ=0.9304;ERATE=0.0048;THETA=0.0004;AC=716;AN=2184 GT:DS:GL:BD 0.32783884 0 1 58390323 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.869;LDAF=0.0130;AVGPOST=0.9940;RSQ=0.8195;ERATE=0.0006;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58390447 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.3343;AVGPOST=0.9959;RSQ=0.9935;ERATE=0.0006;THETA=0.0006;AC=730;AN=2184 GT:DS:GL:BD 0.33424908 0 1 58390462 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6776;ERATE=0.0004;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58390496 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58390615 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.877;LDAF=0.0066;AVGPOST=0.9984;RSQ=0.9030;ERATE=0.0005;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58390618 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0327;AVGPOST=0.9988;RSQ=0.9869;ERATE=0.0004;THETA=0.0005;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 58390624 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5608;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58390752 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7424;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58391080 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8176;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58391152 . A AG 62 PASS INDEL;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4222;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58391240 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8421;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58391245 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58391282 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58391316 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0004;AVGPOST=0.9996;RSQ=0.6330;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58391362 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9567;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58391363 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6817;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58391475 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0031;AVGPOST=0.9995;RSQ=0.9321;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58391533 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0321;AVGPOST=0.9999;RSQ=0.9980;ERATE=0.0003;THETA=0.0006;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 58391577 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1548;AVGPOST=0.9980;RSQ=0.9947;ERATE=0.0005;THETA=0.0003;AC=340;AN=2184 GT:DS:GL:BD 0.15567766 0 1 58391621 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1608;AVGPOST=0.9987;RSQ=0.9967;ERATE=0.0003;THETA=0.0008;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 58391659 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58391678 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0320;AVGPOST=1.0000;RSQ=0.9993;ERATE=0.0003;THETA=0.0009;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 58391707 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6394;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58391841 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58391864 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8448;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58391865 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.917;LDAF=0.0039;AVGPOST=0.9984;RSQ=0.8274;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58391939 . T TGA 12494 PASS INDEL;BAVGPOST=0.958;BRSQ=0.925;LDAF=0.2953;AVGPOST=0.9709;RSQ=0.9557;ERATE=0.0005;THETA=0.0009;AC=662;AN=2184 GT:DS:GL:BD 0.30311355 0 1 58391952 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.958;BRSQ=0.925;LDAF=0.2693;AVGPOST=0.9560;RSQ=0.9335;ERATE=0.0025;THETA=0.0004;AC=599;AN=2184 GT:DS:GL:BD 0.27426741 0 1 58391985 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0189;AVGPOST=0.9982;RSQ=0.9645;ERATE=0.0003;THETA=0.0003;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 58391992 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1605;AVGPOST=0.9992;RSQ=0.9978;ERATE=0.0003;THETA=0.0004;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 58392059 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0175;AVGPOST=0.9989;RSQ=0.9749;ERATE=0.0003;THETA=0.0002;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 58392117 . G GA 28 PASS INDEL;BAVGPOST=0.995;BRSQ=0.602;LDAF=0.0106;AVGPOST=0.9861;RSQ=0.4973;ERATE=0.0029;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58392178 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58392245 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58392448 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58392501 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58392618 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58392657 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0021;AVGPOST=0.9969;RSQ=0.4400;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58392765 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1609;AVGPOST=0.9988;RSQ=0.9973;ERATE=0.0003;THETA=0.0004;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 58392775 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58392902 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0322;AVGPOST=0.9995;RSQ=0.9927;ERATE=0.0003;THETA=0.0006;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 58392942 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0183;AVGPOST=0.9984;RSQ=0.9662;ERATE=0.0004;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 58393097 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58393206 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9300;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58393310 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8497;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58393396 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58393431 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0129;AVGPOST=0.9999;RSQ=0.9955;ERATE=0.0003;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 58393441 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1931;AVGPOST=0.9988;RSQ=0.9967;ERATE=0.0004;THETA=0.0004;AC=422;AN=2184 GT:DS:GL:BD 0.19322345 0 1 58393557 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5545;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58393750 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9870;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58393841 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0129;AVGPOST=0.9997;RSQ=0.9910;ERATE=0.0003;THETA=0.0001;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 58393918 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0212;AVGPOST=0.9992;RSQ=0.9849;ERATE=0.0003;THETA=0.0002;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 58394108 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0128;AVGPOST=0.9999;RSQ=0.9970;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 58394120 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58394144 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0032;AVGPOST=0.9984;RSQ=0.8738;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58394145 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9812;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58394192 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58394215 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58394231 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1604;AVGPOST=0.9993;RSQ=0.9976;ERATE=0.0004;THETA=0.0004;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 58394341 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9528;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58394351 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.7219;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58394379 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0311;AVGPOST=0.9997;RSQ=0.9951;ERATE=0.0003;THETA=0.0005;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 58394395 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8198;ERATE=0.0005;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58394572 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8540;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58394595 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0128;AVGPOST=1.0000;RSQ=0.9985;ERATE=0.0003;THETA=0.0006;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 58394641 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5223;AVGPOST=0.9986;RSQ=0.9976;ERATE=0.0005;THETA=0.0007;AC=1142;AN=2184 GT:DS:GL:BD 0.52289379 1 1 58394656 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58394684 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2910;AVGPOST=0.9973;RSQ=0.9951;ERATE=0.0004;THETA=0.0006;AC=637;AN=2184 GT:DS:GL:BD 0.29166666 0 1 58394690 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.970;LDAF=0.0354;AVGPOST=0.9954;RSQ=0.9552;ERATE=0.0004;THETA=0.0003;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 58394752 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1919;AVGPOST=0.9976;RSQ=0.9932;ERATE=0.0005;THETA=0.0005;AC=421;AN=2184 GT:DS:GL:BD 0.19276556 0 1 58394864 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58394921 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0080;AVGPOST=0.9994;RSQ=0.9687;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58394922 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6661;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58394938 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.5148;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58395123 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0322;AVGPOST=0.9994;RSQ=0.9912;ERATE=0.0004;THETA=0.0002;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 58395161 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0046;AVGPOST=0.9998;RSQ=0.9767;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58395205 . A AT 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.6738;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58395238 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5351;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58395276 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0319;AVGPOST=0.9996;RSQ=0.9947;ERATE=0.0003;THETA=0.0017;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 58395280 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0069;AVGPOST=0.9980;RSQ=0.8864;ERATE=0.0005;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58395348 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2911;AVGPOST=0.9985;RSQ=0.9972;ERATE=0.0005;THETA=0.0004;AC=636;AN=2184 GT:DS:GL:BD 0.29120880 0 1 58395366 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.846;LDAF=0.0055;AVGPOST=0.9981;RSQ=0.8746;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58395386 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0037;AVGPOST=0.9990;RSQ=0.8820;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58395390 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.5217;AVGPOST=0.9978;RSQ=0.9962;ERATE=0.0005;THETA=0.0004;AC=1141;AN=2184 GT:DS:GL:BD 0.52243590 1 1 58395407 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7664;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58395440 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9992;RSQ=0.8531;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58395508 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58395556 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0047;AVGPOST=0.9995;RSQ=0.9542;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58395627 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6524;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58395674 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6983;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58395719 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.703;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6707;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58395899 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58395916 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.932;LDAF=0.0098;AVGPOST=0.9985;RSQ=0.9337;ERATE=0.0004;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58395982 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0323;AVGPOST=0.9993;RSQ=0.9897;ERATE=0.0004;THETA=0.0010;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 58396119 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0129;AVGPOST=0.9997;RSQ=0.9910;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 58396163 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.893;LDAF=0.0029;AVGPOST=0.9984;RSQ=0.7453;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58396164 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6223;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58396231 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9602;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58396240 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58396281 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0324;AVGPOST=0.9992;RSQ=0.9896;ERATE=0.0003;THETA=0.0004;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 58396292 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58396297 . G GT 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5054;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58396311 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1603;AVGPOST=0.9978;RSQ=0.9943;ERATE=0.0003;THETA=0.0002;AC=349;AN=2184 GT:DS:GL:BD 0.15979853 0 1 58396312 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6093;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58396364 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0314;AVGPOST=0.9993;RSQ=0.9891;ERATE=0.0004;THETA=0.0007;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 58396409 . TC T 90 PASS INDEL;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4966;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58396509 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0313;AVGPOST=0.9995;RSQ=0.9932;ERATE=0.0003;THETA=0.0005;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 58396669 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0015;AVGPOST=0.9992;RSQ=0.7912;ERATE=0.0003;THETA=0.0051;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58396721 . T TG 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5176;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58396772 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0023;AVGPOST=0.9985;RSQ=0.7636;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58396783 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.957;LDAF=0.1360;AVGPOST=0.9880;RSQ=0.9663;ERATE=0.0003;THETA=0.0004;AC=293;AN=2184 GT:DS:GL:BD 0.13415751 0 1 58396787 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5491;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58396885 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58396956 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9473;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58397069 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5175;AVGPOST=0.9976;RSQ=0.9961;ERATE=0.0006;THETA=0.0004;AC=1131;AN=2184 GT:DS:GL:BD 0.51785713 1 1 58397106 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0048;AVGPOST=0.9996;RSQ=0.9631;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58397143 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7454;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58397170 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0065;AVGPOST=0.9999;RSQ=0.9898;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58397254 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5226;AVGPOST=0.9968;RSQ=0.9953;ERATE=0.0003;THETA=0.0004;AC=1142;AN=2184 GT:DS:GL:BD 0.52289379 1 1 58397332 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.7301;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58397365 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.989;LDAF=0.1997;AVGPOST=0.9936;RSQ=0.9857;ERATE=0.0013;THETA=0.0004;AC=439;AN=2184 GT:DS:GL:BD 0.20100732 0 1 58397442 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.5730;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58397444 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.982;LDAF=0.1005;AVGPOST=0.9971;RSQ=0.9874;ERATE=0.0004;THETA=0.0026;AC=218;AN=2184 GT:DS:GL:BD 0.09981685 0 1 58397553 . TCTGCTTA T 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0023;AVGPOST=0.9966;RSQ=0.4546;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58397644 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0026;AVGPOST=0.9992;RSQ=0.8588;ERATE=0.0005;THETA=0.0083;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58397679 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0029;AVGPOST=0.9972;RSQ=0.5756;ERATE=0.0006;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58397741 . AT A 26 PASS INDEL;BAVGPOST=0.958;BRSQ=0.085;LDAF=0.1055;AVGPOST=0.8467;RSQ=0.3628;ERATE=0.0067;THETA=0.0008;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 58397779 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.973;LDAF=0.0395;AVGPOST=0.9984;RSQ=0.9832;ERATE=0.0006;THETA=0.0004;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 58397797 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0048;AVGPOST=0.9986;RSQ=0.8902;ERATE=0.0005;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58397809 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.973;LDAF=0.0388;AVGPOST=0.9995;RSQ=0.9944;ERATE=0.0003;THETA=0.0002;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 58397935 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5642;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58397973 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1762;AVGPOST=0.9991;RSQ=0.9973;ERATE=0.0004;THETA=0.0004;AC=385;AN=2184 GT:DS:GL:BD 0.17628205 0 1 58398008 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0021;AVGPOST=0.9977;RSQ=0.5393;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58398060 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6021;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58398123 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.678;LDAF=0.0037;AVGPOST=0.9974;RSQ=0.7021;ERATE=0.0006;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58398161 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.922;LDAF=0.1701;AVGPOST=0.9906;RSQ=0.9770;ERATE=0.0011;THETA=0.0004;AC=375;AN=2184 GT:DS:GL:BD 0.17170329 0 1 58398168 . AGAGACGG A 2058 PASS INDEL;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0132;AVGPOST=0.9990;RSQ=0.9697;ERATE=0.0003;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 58398191 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.720;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58398217 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0390;AVGPOST=0.9995;RSQ=0.9943;ERATE=0.0003;THETA=0.0013;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 58398331 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0391;AVGPOST=0.9993;RSQ=0.9919;ERATE=0.0003;THETA=0.0004;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 58398492 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.2100;AVGPOST=0.9992;RSQ=0.9978;ERATE=0.0005;THETA=0.0003;AC=459;AN=2184 GT:DS:GL:BD 0.21016483 0 1 58398638 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0390;AVGPOST=0.9997;RSQ=0.9960;ERATE=0.0004;THETA=0.0004;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 58398659 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0391;AVGPOST=0.9995;RSQ=0.9937;ERATE=0.0004;THETA=0.0005;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 58398664 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58398753 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5245;AVGPOST=0.9973;RSQ=0.9957;ERATE=0.0005;THETA=0.0007;AC=1147;AN=2184 GT:DS:GL:BD 0.52518314 1 1 58398773 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6942;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58399032 . CTTG C 210 PASS INDEL;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0033;AVGPOST=0.9990;RSQ=0.8693;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58399042 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0400;AVGPOST=0.9991;RSQ=0.9914;ERATE=0.0003;THETA=0.0006;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 58399067 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.721;LDAF=0.0023;AVGPOST=0.9975;RSQ=0.5831;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58399097 rs111258164 C CT 12144 PASS INDEL;BAVGPOST=0.988;BRSQ=0.973;LDAF=0.2159;AVGPOST=0.9647;RSQ=0.9238;ERATE=0.0056;THETA=0.0004;AC=458;AN=2184 GT:DS:GL:BD 0.20970696 0 1 58399102 . T TA 6 PASS INDEL;BAVGPOST=0.990;BRSQ=0.341;LDAF=0.0152;AVGPOST=0.9779;RSQ=0.4415;ERATE=0.0017;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58399176 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5218;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58399191 . CATA C 168 PASS INDEL;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5000;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58399217 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0068;AVGPOST=0.9981;RSQ=0.8997;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58399318 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0321;AVGPOST=0.9991;RSQ=0.9895;ERATE=0.0003;THETA=0.0003;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 58399331 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.1711;AVGPOST=0.9993;RSQ=0.9978;ERATE=0.0004;THETA=0.0002;AC=374;AN=2184 GT:DS:GL:BD 0.17124543 0 1 58399372 . ATCT A 1768 PASS INDEL;BAVGPOST=0.995;BRSQ=0.817;LDAF=0.0152;AVGPOST=0.9943;RSQ=0.8554;ERATE=0.0004;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58399617 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.720;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4776;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58399716 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.942;LDAF=0.0383;AVGPOST=0.9888;RSQ=0.8868;ERATE=0.0016;THETA=0.0003;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 58399842 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0039;AVGPOST=0.9948;RSQ=0.4848;ERATE=0.0011;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58399896 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.938;LDAF=0.2131;AVGPOST=0.9777;RSQ=0.9535;ERATE=0.0011;THETA=0.0007;AC=460;AN=2184 GT:DS:GL:BD 0.21062271 0 1 58399928 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1872;AVGPOST=0.9977;RSQ=0.9941;ERATE=0.0005;THETA=0.0004;AC=410;AN=2184 GT:DS:GL:BD 0.18772894 0 1 58399973 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0321;AVGPOST=0.9988;RSQ=0.9858;ERATE=0.0004;THETA=0.0004;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 58400217 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58400235 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.779;LDAF=0.0073;AVGPOST=0.9961;RSQ=0.8040;ERATE=0.0007;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58400239 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58400320 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0004;AVGPOST=0.9997;RSQ=0.7164;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58400363 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0031;AVGPOST=0.9986;RSQ=0.8285;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58400376 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5894;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58400416 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0022;AVGPOST=0.9982;RSQ=0.6464;ERATE=0.0012;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58400432 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5539;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58400433 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7783;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58400600 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0026;AVGPOST=0.9988;RSQ=0.8083;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58400936 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9107;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58401104 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0321;AVGPOST=0.9989;RSQ=0.9883;ERATE=0.0003;THETA=0.0002;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 58401398 . A AAAC 10576 PASS INDEL;BAVGPOST=0.997;BRSQ=0.987;LDAF=0.0685;AVGPOST=0.9904;RSQ=0.9469;ERATE=0.0007;THETA=0.0003;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 58401421 . A AC 128 PASS INDEL;BAVGPOST=0.987;BRSQ=0.676;LDAF=0.0226;AVGPOST=0.9794;RSQ=0.6782;ERATE=0.0013;THETA=0.0005;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 58401480 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8519;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58401485 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58401573 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.946;LDAF=0.0171;AVGPOST=0.9972;RSQ=0.9422;ERATE=0.0003;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 58401586 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9417;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58401623 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58401672 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0077;AVGPOST=0.9995;RSQ=0.9707;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58401796 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9999;RSQ=0.9898;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58401933 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.551;LDAF=0.0069;AVGPOST=0.9904;RSQ=0.5002;ERATE=0.0017;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58401950 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.3674;AVGPOST=0.9966;RSQ=0.9946;ERATE=0.0004;THETA=0.0016;AC=804;AN=2184 GT:DS:GL:BD 0.36813188 0 1 58401976 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0152;AVGPOST=0.9998;RSQ=0.9941;ERATE=0.0003;THETA=0.0005;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58402021 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.942;LDAF=0.0109;AVGPOST=0.9970;RSQ=0.9108;ERATE=0.0004;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58402040 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0039;AVGPOST=0.9996;RSQ=0.9608;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58402054 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58402260 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3437;AVGPOST=0.9966;RSQ=0.9944;ERATE=0.0005;THETA=0.0004;AC=752;AN=2184 GT:DS:GL:BD 0.34432235 0 1 58402271 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6392;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58402295 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0152;AVGPOST=0.9997;RSQ=0.9912;ERATE=0.0003;THETA=0.0004;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58402345 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.986;LDAF=0.3434;AVGPOST=0.9978;RSQ=0.9961;ERATE=0.0004;THETA=0.0007;AC=752;AN=2184 GT:DS:GL:BD 0.34432235 0 1 58402364 . A AT 1260 PASS INDEL;BAVGPOST=0.971;BRSQ=0.726;LDAF=0.0783;AVGPOST=0.9383;RSQ=0.6665;ERATE=0.0091;THETA=0.0005;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 58402367 . TA T 10773 PASS INDEL;BAVGPOST=0.928;BRSQ=0.869;LDAF=0.3002;AVGPOST=0.9183;RSQ=0.8719;ERATE=0.0118;THETA=0.0006;AC=682;AN=2184 GT:DS:GL:BD 0.31227106 0 1 58402368 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.968;LDAF=0.3364;AVGPOST=0.9949;RSQ=0.9910;ERATE=0.0006;THETA=0.0006;AC=739;AN=2184 GT:DS:GL:BD 0.33836997 0 1 58402372 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0025;AVGPOST=0.9983;RSQ=0.7655;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58402388 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=0.9982;RSQ=0.8957;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58402473 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.921;LDAF=0.0074;AVGPOST=0.9988;RSQ=0.9391;ERATE=0.0004;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58402686 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3441;AVGPOST=0.9981;RSQ=0.9970;ERATE=0.0006;THETA=0.0003;AC=751;AN=2184 GT:DS:GL:BD 0.34386447 0 1 58402877 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.5510;AVGPOST=0.9980;RSQ=0.9968;ERATE=0.0004;THETA=0.0005;AC=1205;AN=2184 GT:DS:GL:BD 0.55173993 1 1 58402915 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3423;AVGPOST=0.9999;RSQ=0.9997;ERATE=0.0003;THETA=0.0003;AC=748;AN=2184 GT:DS:GL:BD 0.34249085 0 1 58403053 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3426;AVGPOST=0.9989;RSQ=0.9982;ERATE=0.0004;THETA=0.0004;AC=748;AN=2184 GT:DS:GL:BD 0.34249085 0 1 58403253 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5394;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58403306 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.896;LDAF=0.0215;AVGPOST=0.9913;RSQ=0.8303;ERATE=0.0013;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 58403375 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.8182;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58403411 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3424;AVGPOST=0.9993;RSQ=0.9987;ERATE=0.0004;THETA=0.0003;AC=748;AN=2184 GT:DS:GL:BD 0.34249085 0 1 58403459 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58403487 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0121;AVGPOST=0.9996;RSQ=0.9858;ERATE=0.0004;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58403510 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3430;AVGPOST=0.9980;RSQ=0.9967;ERATE=0.0008;THETA=0.0006;AC=749;AN=2184 GT:DS:GL:BD 0.34294870 0 1 58403623 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3442;AVGPOST=0.9987;RSQ=0.9978;ERATE=0.0004;THETA=0.0002;AC=752;AN=2184 GT:DS:GL:BD 0.34432235 0 1 58403684 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.893;LDAF=0.0044;AVGPOST=0.9986;RSQ=0.8751;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58403912 . C CA 1548 PASS INDEL;BAVGPOST=0.996;BRSQ=0.706;LDAF=0.0078;AVGPOST=0.9968;RSQ=0.8339;ERATE=0.0006;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58403925 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0312;AVGPOST=0.9997;RSQ=0.9958;ERATE=0.0003;THETA=0.0002;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 58403927 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7863;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58404000 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58404118 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3425;AVGPOST=0.9979;RSQ=0.9965;ERATE=0.0006;THETA=0.0003;AC=748;AN=2184 GT:DS:GL:BD 0.34249085 0 1 58404241 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3415;AVGPOST=0.9975;RSQ=0.9963;ERATE=0.0004;THETA=0.0010;AC=746;AN=2184 GT:DS:GL:BD 0.34157509 0 1 58404266 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3423;AVGPOST=0.9991;RSQ=0.9985;ERATE=0.0003;THETA=0.0006;AC=748;AN=2184 GT:DS:GL:BD 0.34249085 0 1 58404291 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58404401 . A AT 11932 PASS INDEL;BAVGPOST=0.987;BRSQ=0.977;LDAF=0.5123;AVGPOST=0.9948;RSQ=0.9924;ERATE=0.0004;THETA=0.0002;AC=1117;AN=2184 GT:DS:GL:BD 0.51144689 1 1 58404404 rs34945099 T TC 64507 PASS INDEL;BAVGPOST=0.987;BRSQ=0.977;LDAF=0.5133;AVGPOST=0.9934;RSQ=0.9902;ERATE=0.0007;THETA=0.0007;AC=1118;AN=2184 GT:DS:GL:BD 0.51190478 1 1 58404445 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.3419;AVGPOST=0.9945;RSQ=0.9912;ERATE=0.0011;THETA=0.0042;AC=748;AN=2184 GT:DS:GL:BD 0.34249085 0 1 58404454 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0019;AVGPOST=0.9978;RSQ=0.5703;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58404545 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9989;RSQ=0.9472;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58404613 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.9040;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58404623 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1649;AVGPOST=0.9984;RSQ=0.9959;ERATE=0.0004;THETA=0.0003;AC=360;AN=2184 GT:DS:GL:BD 0.16483517 0 1 58404672 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9073;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58404693 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3419;AVGPOST=0.9996;RSQ=0.9993;ERATE=0.0003;THETA=0.0004;AC=747;AN=2184 GT:DS:GL:BD 0.34203297 0 1 58404729 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8811;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58404853 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.853;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58404856 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58404906 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.694;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.6119;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58405123 . CG C 277 PASS INDEL;BAVGPOST=0.998;BRSQ=0.526;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5567;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58405124 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3419;AVGPOST=0.9997;RSQ=0.9995;ERATE=0.0004;THETA=0.0004;AC=747;AN=2184 GT:DS:GL:BD 0.34203297 0 1 58405184 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8148;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58405316 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1636;AVGPOST=0.9988;RSQ=0.9970;ERATE=0.0004;THETA=0.0003;AC=359;AN=2184 GT:DS:GL:BD 0.16437729 0 1 58405376 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0034;AVGPOST=0.9988;RSQ=0.8428;ERATE=0.0005;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58405452 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0113;AVGPOST=0.9972;RSQ=0.9158;ERATE=0.0003;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58405510 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0050;AVGPOST=0.9986;RSQ=0.8729;ERATE=0.0007;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58405604 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58405724 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.9109;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58405784 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3418;AVGPOST=0.9992;RSQ=0.9986;ERATE=0.0004;THETA=0.0003;AC=747;AN=2184 GT:DS:GL:BD 0.34203297 0 1 58405816 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0129;AVGPOST=0.9999;RSQ=0.9948;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 58405854 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7286;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58405857 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.5111;AVGPOST=0.9980;RSQ=0.9966;ERATE=0.0006;THETA=0.0005;AC=1117;AN=2184 GT:DS:GL:BD 0.51144689 1 1 58405919 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5088;AVGPOST=0.9981;RSQ=0.9967;ERATE=0.0006;THETA=0.0002;AC=1113;AN=2184 GT:DS:GL:BD 0.50961536 1 1 58405982 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0018;AVGPOST=0.9986;RSQ=0.7275;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58405993 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58406071 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5782;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58406157 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0018;AVGPOST=0.9987;RSQ=0.7309;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58406179 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58406267 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3421;AVGPOST=0.9989;RSQ=0.9980;ERATE=0.0004;THETA=0.0012;AC=747;AN=2184 GT:DS:GL:BD 0.34203297 0 1 58406439 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3418;AVGPOST=0.9993;RSQ=0.9988;ERATE=0.0003;THETA=0.0002;AC=747;AN=2184 GT:DS:GL:BD 0.34203297 0 1 58406482 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3422;AVGPOST=0.9983;RSQ=0.9975;ERATE=0.0003;THETA=0.0004;AC=747;AN=2184 GT:DS:GL:BD 0.34203297 0 1 58406492 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3413;AVGPOST=0.9982;RSQ=0.9975;ERATE=0.0003;THETA=0.0004;AC=746;AN=2184 GT:DS:GL:BD 0.34157509 0 1 58406543 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0128;AVGPOST=0.9998;RSQ=0.9931;ERATE=0.0003;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 58406547 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0098;AVGPOST=0.9995;RSQ=0.9774;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58406552 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.9283;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58406786 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8724;ERATE=0.0003;THETA=0.0049;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58406853 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58407048 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.5509;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58407229 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0027;AVGPOST=0.9978;RSQ=0.6984;ERATE=0.0007;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58407357 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0104;AVGPOST=0.9986;RSQ=0.9413;ERATE=0.0004;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58407387 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.980;LDAF=0.3414;AVGPOST=0.9789;RSQ=0.9654;ERATE=0.0032;THETA=0.0002;AC=749;AN=2184 GT:DS:GL:BD 0.34294870 0 1 58407424 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.859;LDAF=0.0110;AVGPOST=0.9963;RSQ=0.8541;ERATE=0.0005;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58407465 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0096;AVGPOST=0.9962;RSQ=0.8442;ERATE=0.0006;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58407483 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.674;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.5738;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58407485 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0031;AVGPOST=0.9973;RSQ=0.6190;ERATE=0.0008;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58407536 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.568;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.4734;ERATE=0.0007;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58407629 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0008;AVGPOST=0.9998;RSQ=0.8876;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58407640 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0098;AVGPOST=0.9996;RSQ=0.9840;ERATE=0.0003;THETA=0.0059;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58407646 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58407690 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0251;AVGPOST=0.9971;RSQ=0.9558;ERATE=0.0003;THETA=0.0004;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 58407698 . TC T 29 PASS INDEL;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7941;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58407801 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8526;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58407834 . GCA G 178 PASS INDEL;BAVGPOST=1.000;BRSQ=0.772;LDAF=0.0006;AVGPOST=0.9988;RSQ=0.2658;ERATE=0.0004;THETA=0.0012;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 58407882 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=0.9992;RSQ=0.9323;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58408003 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.7100;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58408183 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7930;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58408379 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7607;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58408421 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9880;ERATE=0.0003;THETA=0.0026;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58408424 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3426;AVGPOST=0.9990;RSQ=0.9983;ERATE=0.0004;THETA=0.0013;AC=749;AN=2184 GT:DS:GL:BD 0.34294870 0 1 58408470 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4935;AVGPOST=0.9984;RSQ=0.9975;ERATE=0.0004;THETA=0.0004;AC=1080;AN=2184 GT:DS:GL:BD 0.49450549 0 1 58408606 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0078;AVGPOST=0.9973;RSQ=0.8581;ERATE=0.0022;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58408611 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7882;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58408683 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5519;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58408810 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58408855 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4715;AVGPOST=0.9985;RSQ=0.9975;ERATE=0.0005;THETA=0.0006;AC=1031;AN=2184 GT:DS:GL:BD 0.47206959 0 1 58408898 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58409058 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0018;AVGPOST=0.9995;RSQ=0.8858;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58409069 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58409203 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5782;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58409246 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7320;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58409346 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0032;AVGPOST=0.9967;RSQ=0.6091;ERATE=0.0008;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58409419 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.9149;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58409426 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9177;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58409445 . TC T 470 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58409491 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0146;AVGPOST=0.9989;RSQ=0.9762;ERATE=0.0003;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 58409568 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0008;AVGPOST=0.9998;RSQ=0.9110;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58409755 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5008;AVGPOST=0.9988;RSQ=0.9983;ERATE=0.0004;THETA=0.0004;AC=1094;AN=2184 GT:DS:GL:BD 0.50091577 1 1 58409783 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5502;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58409800 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58409820 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9429;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58409899 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7116;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58409904 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3482;AVGPOST=0.9995;RSQ=0.9990;ERATE=0.0004;THETA=0.0004;AC=761;AN=2184 GT:DS:GL:BD 0.34844321 0 1 58409918 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0348;AVGPOST=0.9983;RSQ=0.9816;ERATE=0.0003;THETA=0.0003;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 58409953 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.717;LDAF=0.0043;AVGPOST=0.9970;RSQ=0.7144;ERATE=0.0011;THETA=0.0020;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58409987 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9392;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58410053 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8016;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58410069 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0004;AVGPOST=0.9994;RSQ=0.4329;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58410074 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0031;AVGPOST=0.9970;RSQ=0.6352;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58410235 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0037;AVGPOST=0.9990;RSQ=0.8825;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58410406 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7369;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58410476 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9558;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58410570 . CAG C 18 PASS INDEL;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0036;AVGPOST=0.9960;RSQ=0.5859;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58410671 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58410674 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7233;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58410699 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3418;AVGPOST=0.9992;RSQ=0.9985;ERATE=0.0005;THETA=0.0004;AC=747;AN=2184 GT:DS:GL:BD 0.34203297 0 1 58410712 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8470;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58410790 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5436;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58410829 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3418;AVGPOST=0.9990;RSQ=0.9982;ERATE=0.0006;THETA=0.0003;AC=747;AN=2184 GT:DS:GL:BD 0.34203297 0 1 58410919 . GTCA G 41 PASS INDEL;BAVGPOST=0.995;BRSQ=0.677;LDAF=0.0193;AVGPOST=0.9818;RSQ=0.6417;ERATE=0.0034;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 58411083 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0209;AVGPOST=0.9991;RSQ=0.9811;ERATE=0.0003;THETA=0.0005;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 58411117 . TA T 1711 PASS INDEL;BAVGPOST=0.980;BRSQ=0.876;LDAF=0.0929;AVGPOST=0.9825;RSQ=0.9276;ERATE=0.0006;THETA=0.0007;AC=204;AN=2184 GT:DS:GL:BD 0.09340660 0 1 58411123 . TA T 4320 PASS INDEL;BAVGPOST=0.974;BRSQ=0.880;LDAF=0.1203;AVGPOST=0.9748;RSQ=0.9228;ERATE=0.0006;THETA=0.0003;AC=262;AN=2184 GT:DS:GL:BD 0.11996337 0 1 58411124 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.838;LDAF=0.1211;AVGPOST=0.9647;RSQ=0.8825;ERATE=0.0032;THETA=0.0003;AC=268;AN=2184 GT:DS:GL:BD 0.12271062 0 1 58411125 . TTA T 4273 PASS INDEL;BAVGPOST=0.973;BRSQ=0.876;LDAF=0.1232;AVGPOST=0.9681;RSQ=0.8980;ERATE=0.0009;THETA=0.0005;AC=262;AN=2184 GT:DS:GL:BD 0.11996337 0 1 58411126 . TA T 4352 PASS INDEL;BAVGPOST=0.973;BRSQ=0.878;LDAF=0.1243;AVGPOST=0.9724;RSQ=0.9152;ERATE=0.0007;THETA=0.0003;AC=271;AN=2184 GT:DS:GL:BD 0.12408425 0 1 58411269 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0020;AVGPOST=0.9989;RSQ=0.7975;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58411283 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3994;AVGPOST=0.9949;RSQ=0.9922;ERATE=0.0006;THETA=0.0010;AC=871;AN=2184 GT:DS:GL:BD 0.39880952 0 1 58411690 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0202;AVGPOST=0.9989;RSQ=0.9803;ERATE=0.0003;THETA=0.0003;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 58411847 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0112;AVGPOST=0.9993;RSQ=0.9703;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58412042 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=0.9999;RSQ=0.9931;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58412209 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9133;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58412275 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1366;AVGPOST=0.9970;RSQ=0.9915;ERATE=0.0005;THETA=0.0004;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 58412282 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0118;AVGPOST=0.9984;RSQ=0.9577;ERATE=0.0003;THETA=0.0002;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 58412287 . G GAT 306 PASS INDEL;BAVGPOST=0.997;BRSQ=0.743;LDAF=0.0092;AVGPOST=0.9915;RSQ=0.6379;ERATE=0.0013;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58412374 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0077;AVGPOST=0.9998;RSQ=0.9889;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58412467 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.3197;AVGPOST=0.9986;RSQ=0.9976;ERATE=0.0004;THETA=0.0004;AC=698;AN=2184 GT:DS:GL:BD 0.31959707 0 1 58412582 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58412671 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58412695 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9319;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58412711 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7121;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58412717 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1507;AVGPOST=0.9974;RSQ=0.9927;ERATE=0.0004;THETA=0.0005;AC=328;AN=2184 GT:DS:GL:BD 0.15018316 0 1 58412804 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58412808 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3205;AVGPOST=0.9980;RSQ=0.9968;ERATE=0.0003;THETA=0.0004;AC=699;AN=2184 GT:DS:GL:BD 0.32005495 0 1 58412896 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6633;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58412917 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9881;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58412966 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.7316;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58413055 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3196;AVGPOST=0.9989;RSQ=0.9980;ERATE=0.0004;THETA=0.0010;AC=698;AN=2184 GT:DS:GL:BD 0.31959707 0 1 58413082 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6808;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58413083 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0345;AVGPOST=0.9993;RSQ=0.9918;ERATE=0.0003;THETA=0.0004;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 58413084 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3420;AVGPOST=0.9991;RSQ=0.9984;ERATE=0.0004;THETA=0.0002;AC=747;AN=2184 GT:DS:GL:BD 0.34203297 0 1 58413121 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3419;AVGPOST=0.9990;RSQ=0.9983;ERATE=0.0004;THETA=0.0005;AC=747;AN=2184 GT:DS:GL:BD 0.34203297 0 1 58413214 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0004;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58413273 . T TA 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5448;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58413348 rs35037502 A AG 55528 PASS INDEL;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3414;AVGPOST=0.9963;RSQ=0.9940;ERATE=0.0009;THETA=0.0003;AC=746;AN=2184 GT:DS:GL:BD 0.34157509 0 1 58413393 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0008;AVGPOST=0.9989;RSQ=0.4964;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58413426 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0017;AVGPOST=0.9995;RSQ=0.9023;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58413515 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3419;AVGPOST=0.9997;RSQ=0.9994;ERATE=0.0003;THETA=0.0005;AC=747;AN=2184 GT:DS:GL:BD 0.34203297 0 1 58413552 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9905;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58413631 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=0.9999;RSQ=0.9932;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58413639 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0022;AVGPOST=0.9997;RSQ=0.9445;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58413640 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.9098;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58413706 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58413741 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3422;AVGPOST=0.9988;RSQ=0.9979;ERATE=0.0004;THETA=0.0004;AC=747;AN=2184 GT:DS:GL:BD 0.34203297 0 1 58413743 . CT C 1978 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0111;AVGPOST=0.9998;RSQ=0.9902;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58413762 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58413763 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58413780 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0117;AVGPOST=0.9993;RSQ=0.9770;ERATE=0.0003;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58414135 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.748;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58414148 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3419;AVGPOST=0.9991;RSQ=0.9983;ERATE=0.0004;THETA=0.0002;AC=747;AN=2184 GT:DS:GL:BD 0.34203297 0 1 58414154 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0062;AVGPOST=0.9986;RSQ=0.9120;ERATE=0.0005;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58414218 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0101;AVGPOST=0.9997;RSQ=0.9877;ERATE=0.0003;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58414389 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3199;AVGPOST=0.9981;RSQ=0.9969;ERATE=0.0005;THETA=0.0002;AC=698;AN=2184 GT:DS:GL:BD 0.31959707 0 1 58414433 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3422;AVGPOST=0.9972;RSQ=0.9956;ERATE=0.0007;THETA=0.0003;AC=746;AN=2184 GT:DS:GL:BD 0.34157509 0 1 58414446 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9107;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58414507 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7568;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58414663 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9327;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58414715 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5138;AVGPOST=0.9985;RSQ=0.9977;ERATE=0.0004;THETA=0.0010;AC=1124;AN=2184 GT:DS:GL:BD 0.51465201 1 1 58414761 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5883;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58414770 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.3253;AVGPOST=0.9992;RSQ=0.9985;ERATE=0.0004;THETA=0.0006;AC=710;AN=2184 GT:DS:GL:BD 0.32509157 0 1 58414835 . T TG 89 PASS INDEL;BAVGPOST=0.991;BRSQ=0.606;LDAF=0.0279;AVGPOST=0.9617;RSQ=0.4385;ERATE=0.0072;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 58414836 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0085;AVGPOST=0.9995;RSQ=0.9691;ERATE=0.0003;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58414842 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0146;AVGPOST=0.9989;RSQ=0.9694;ERATE=0.0004;THETA=0.0010;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 58414871 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6061;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58414907 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8750;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58414922 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3249;AVGPOST=0.9986;RSQ=0.9974;ERATE=0.0004;THETA=0.0003;AC=710;AN=2184 GT:DS:GL:BD 0.32509157 0 1 58414935 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.8956;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58414999 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0082;AVGPOST=0.9992;RSQ=0.9602;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58415181 . A ATC 1204 PASS INDEL;BAVGPOST=0.971;BRSQ=0.751;LDAF=0.0763;AVGPOST=0.9279;RSQ=0.5886;ERATE=0.0230;THETA=0.0011;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 58415183 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.807;LDAF=0.0912;AVGPOST=0.9340;RSQ=0.6765;ERATE=0.0251;THETA=0.0011;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 58415203 . GTCTA G 2371 PASS INDEL;BAVGPOST=0.986;BRSQ=0.850;LDAF=0.0503;AVGPOST=0.9832;RSQ=0.8647;ERATE=0.0035;THETA=0.0003;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 58415207 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.792;LDAF=0.0302;AVGPOST=0.9909;RSQ=0.8788;ERATE=0.0012;THETA=0.0015;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 58415213 . CATCT C 11822 PASS INDEL;BAVGPOST=0.984;BRSQ=0.939;LDAF=0.1337;AVGPOST=0.9973;RSQ=0.9910;ERATE=0.0006;THETA=0.0005;AC=293;AN=2184 GT:DS:GL:BD 0.13415751 0 1 58415250 . TAA T 373 PASS INDEL;BAVGPOST=0.930;BRSQ=0.551;LDAF=0.0843;AVGPOST=0.9405;RSQ=0.7085;ERATE=0.0053;THETA=0.0005;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 58415258 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8401;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58415275 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0030;AVGPOST=0.9987;RSQ=0.8422;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58415293 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0075;AVGPOST=0.9978;RSQ=0.8860;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58415384 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0021;AVGPOST=0.9989;RSQ=0.7716;ERATE=0.0006;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58415435 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7222;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58415547 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58415655 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0240;AVGPOST=0.9991;RSQ=0.9851;ERATE=0.0003;THETA=0.0006;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 58415726 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0069;AVGPOST=0.9989;RSQ=0.9360;ERATE=0.0004;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58415727 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5802;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58415734 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3478;AVGPOST=0.9983;RSQ=0.9972;ERATE=0.0005;THETA=0.0007;AC=760;AN=2184 GT:DS:GL:BD 0.34798536 0 1 58415761 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9576;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58415812 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58415845 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0022;AVGPOST=0.9989;RSQ=0.8350;ERATE=0.0003;THETA=0.0032;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58415886 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3486;AVGPOST=0.9976;RSQ=0.9960;ERATE=0.0006;THETA=0.0005;AC=760;AN=2184 GT:DS:GL:BD 0.34798536 0 1 58415922 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0033;AVGPOST=0.9983;RSQ=0.8036;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58415937 . TAA T 25 PASS INDEL;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58416105 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.0714;AVGPOST=0.9973;RSQ=0.9843;ERATE=0.0004;THETA=0.0008;AC=156;AN=2184 GT:DS:GL:BD 0.07142857 0 1 58416118 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58416155 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.3482;AVGPOST=0.9979;RSQ=0.9965;ERATE=0.0005;THETA=0.0004;AC=760;AN=2184 GT:DS:GL:BD 0.34798536 0 1 58416198 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6843;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58416233 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6952;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58416237 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.8206;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58416256 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7014;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58416297 rs35413511 CA C 12059 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1344;AVGPOST=0.9978;RSQ=0.9924;ERATE=0.0004;THETA=0.0008;AC=293;AN=2184 GT:DS:GL:BD 0.13415751 0 1 58416364 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58416373 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7105;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58416427 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5888;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58416441 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1349;AVGPOST=0.9995;RSQ=0.9980;ERATE=0.0004;THETA=0.0003;AC=295;AN=2184 GT:DS:GL:BD 0.13507326 0 1 58416534 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8058;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58416588 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58416679 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8227;ERATE=0.0005;THETA=0.0062;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58416761 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8557;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58416766 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58417031 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.741;LDAF=0.0037;AVGPOST=0.9953;RSQ=0.5127;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58417095 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0251;AVGPOST=0.9983;RSQ=0.9750;ERATE=0.0004;THETA=0.0004;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 58417264 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3009;AVGPOST=0.9987;RSQ=0.9978;ERATE=0.0003;THETA=0.0006;AC=658;AN=2184 GT:DS:GL:BD 0.30128205 0 1 58417296 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0244;AVGPOST=0.9996;RSQ=0.9929;ERATE=0.0004;THETA=0.0010;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 58417335 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.853;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.8029;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58417342 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6049;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58417348 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.5267;AVGPOST=0.9965;RSQ=0.9953;ERATE=0.0004;THETA=0.0013;AC=1153;AN=2184 GT:DS:GL:BD 0.52793038 1 1 58417374 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58417435 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7613;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58417482 . TA T 49 PASS INDEL;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.3759;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58417538 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0109;AVGPOST=0.9984;RSQ=0.9378;ERATE=0.0004;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58417572 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.767;LDAF=0.0029;AVGPOST=0.9990;RSQ=0.8764;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58417577 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0025;AVGPOST=0.9993;RSQ=0.8614;ERATE=0.0005;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58417652 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9289;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58417662 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0824;AVGPOST=0.9998;RSQ=0.9986;ERATE=0.0003;THETA=0.0003;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 58417668 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7921;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58417698 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58417732 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3018;AVGPOST=0.9987;RSQ=0.9976;ERATE=0.0004;THETA=0.0005;AC=659;AN=2184 GT:DS:GL:BD 0.30173993 0 1 58417738 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58417815 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0079;AVGPOST=0.9979;RSQ=0.8891;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58417841 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0066;AVGPOST=0.9996;RSQ=0.9740;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58417871 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8798;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58418133 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6898;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58418184 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7143;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58418385 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0097;AVGPOST=0.9980;RSQ=0.9257;ERATE=0.0003;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58418495 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3013;AVGPOST=0.9985;RSQ=0.9975;ERATE=0.0003;THETA=0.0004;AC=659;AN=2184 GT:DS:GL:BD 0.30173993 0 1 58418500 . TC T 2108 PASS INDEL;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0124;AVGPOST=0.9972;RSQ=0.9049;ERATE=0.0005;THETA=0.0007;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 58418519 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58418565 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58418594 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0048;AVGPOST=0.9986;RSQ=0.8972;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58418601 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0013;AVGPOST=0.9999;RSQ=0.9551;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58418885 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0253;AVGPOST=0.9991;RSQ=0.9849;ERATE=0.0003;THETA=0.0003;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 58418887 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1724;AVGPOST=0.9992;RSQ=0.9981;ERATE=0.0003;THETA=0.0003;AC=378;AN=2184 GT:DS:GL:BD 0.17307693 0 1 58418897 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58419050 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.970;LDAF=0.0469;AVGPOST=0.9966;RSQ=0.9711;ERATE=0.0004;THETA=0.0003;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 58419271 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0033;AVGPOST=0.9996;RSQ=0.9476;ERATE=0.0005;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58419318 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58419440 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.8071;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58419472 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.5638;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58419498 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58419522 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5043;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58419536 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0245;AVGPOST=0.9995;RSQ=0.9900;ERATE=0.0003;THETA=0.0004;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 58419556 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7880;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58419573 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0229;AVGPOST=0.9998;RSQ=0.9962;ERATE=0.0003;THETA=0.0009;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 58419691 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0197;AVGPOST=1.0000;RSQ=0.9990;ERATE=0.0003;THETA=0.0005;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 58419755 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1346;AVGPOST=0.9990;RSQ=0.9965;ERATE=0.0004;THETA=0.0006;AC=294;AN=2184 GT:DS:GL:BD 0.13461539 0 1 58419770 . TG T 127 PASS INDEL;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6057;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58419792 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3017;AVGPOST=0.9988;RSQ=0.9978;ERATE=0.0004;THETA=0.0010;AC=659;AN=2184 GT:DS:GL:BD 0.30173993 0 1 58419883 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7717;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58419893 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0020;AVGPOST=0.9992;RSQ=0.8249;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58420026 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0032;AVGPOST=0.9993;RSQ=0.9077;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58420099 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0019;AVGPOST=0.9983;RSQ=0.6964;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58420108 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8303;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58420118 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58420166 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58420167 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5234;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58420175 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0050;AVGPOST=0.9999;RSQ=0.9913;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58420232 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8476;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58420235 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7428;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58420272 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58420338 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58420351 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58420447 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.817;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6875;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58420517 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0036;AVGPOST=0.9992;RSQ=0.9226;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58420661 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.3003;AVGPOST=0.9977;RSQ=0.9961;ERATE=0.0004;THETA=0.0003;AC=657;AN=2184 GT:DS:GL:BD 0.30082417 0 1 58420711 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58420729 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58420809 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0250;AVGPOST=0.9993;RSQ=0.9888;ERATE=0.0004;THETA=0.0005;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 58420835 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8288;AVGPOST=0.9989;RSQ=0.9972;ERATE=0.0003;THETA=0.0003;AC=1810;AN=2184 GT:DS:GL:BD 0.82875460 1 1 58420860 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.8651;AVGPOST=0.9981;RSQ=0.9937;ERATE=0.0005;THETA=0.0002;AC=1890;AN=2184 GT:DS:GL:BD 0.86538464 1 1 58421100 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9414;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58421210 rs72499001 C CTAA 94856 PASS INDEL;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.8261;AVGPOST=0.9940;RSQ=0.9838;ERATE=0.0012;THETA=0.0010;AC=1806;AN=2184 GT:DS:GL:BD 0.82692307 1 1 58421272 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.795;LDAF=0.0043;AVGPOST=0.9982;RSQ=0.8201;ERATE=0.0004;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58421279 . CT C 133 PASS INDEL;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.6153;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58421406 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0067;AVGPOST=0.9994;RSQ=0.9638;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58421407 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58421431 . GTT G 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0022;AVGPOST=0.9979;RSQ=0.5656;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58421560 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0110;AVGPOST=0.9997;RSQ=0.9881;ERATE=0.0003;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58421594 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58421615 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58421883 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0106;AVGPOST=0.9986;RSQ=0.9540;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58421900 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0111;AVGPOST=0.9998;RSQ=0.9900;ERATE=0.0003;THETA=0.0011;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58421956 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5387;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58421971 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0265;AVGPOST=0.9992;RSQ=0.9855;ERATE=0.0003;THETA=0.0004;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 58422021 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0247;AVGPOST=0.9990;RSQ=0.9850;ERATE=0.0003;THETA=0.0003;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 58422037 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7085;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58422087 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0110;AVGPOST=0.9999;RSQ=0.9960;ERATE=0.0003;THETA=0.0007;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58422159 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9531;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58422183 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7811;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58422207 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58422211 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58422223 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.7219;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58422229 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58422354 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9265;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58422394 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58422494 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.6043;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58422562 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6669;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58422566 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5253;AVGPOST=0.9979;RSQ=0.9970;ERATE=0.0004;THETA=0.0004;AC=1146;AN=2184 GT:DS:GL:BD 0.52472526 1 1 58422651 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58422752 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9152;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58422760 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.3008;AVGPOST=0.9995;RSQ=0.9991;ERATE=0.0003;THETA=0.0005;AC=657;AN=2184 GT:DS:GL:BD 0.30082417 0 1 58422830 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8646;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58422846 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0093;AVGPOST=0.9995;RSQ=0.9765;ERATE=0.0004;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58422857 . TAAG T 30 PASS INDEL;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58422954 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9228;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58422958 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8283;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58422977 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.7021;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58423026 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7724;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58423544 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58423622 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.2782;AVGPOST=0.9987;RSQ=0.9978;ERATE=0.0004;THETA=0.0004;AC=608;AN=2184 GT:DS:GL:BD 0.27838829 0 1 58423732 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.758;LDAF=0.0024;AVGPOST=0.9981;RSQ=0.6881;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58423813 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5951;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58423838 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0040;AVGPOST=0.9976;RSQ=0.7317;ERATE=0.0007;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58423940 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0098;AVGPOST=0.9970;RSQ=0.9018;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58423993 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.6092;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58424034 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9181;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58424080 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0071;AVGPOST=0.9995;RSQ=0.9722;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58424106 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5261;AVGPOST=0.9982;RSQ=0.9974;ERATE=0.0005;THETA=0.0004;AC=1148;AN=2184 GT:DS:GL:BD 0.52564102 1 1 58424153 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9370;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58424250 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8356;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58424363 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9546;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58424372 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0052;AVGPOST=0.9982;RSQ=0.8652;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58424597 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0030;AVGPOST=0.9992;RSQ=0.8852;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58424858 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58424877 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.667;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58424884 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0065;AVGPOST=0.9978;RSQ=0.8853;ERATE=0.0004;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58424920 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9186;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58424939 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2791;AVGPOST=0.9984;RSQ=0.9968;ERATE=0.0005;THETA=0.0006;AC=609;AN=2184 GT:DS:GL:BD 0.27884614 0 1 58425040 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.5082;AVGPOST=0.9978;RSQ=0.9966;ERATE=0.0004;THETA=0.0003;AC=1109;AN=2184 GT:DS:GL:BD 0.50778389 1 1 58425264 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9133;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58425291 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.749;LDAF=0.0041;AVGPOST=0.9950;RSQ=0.5021;ERATE=0.0016;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58425311 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58425410 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5611;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58425457 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.783;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9558;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58425541 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58425609 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58425689 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8824;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58425720 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0027;AVGPOST=0.9988;RSQ=0.8431;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58425721 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.6937;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58425741 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0102;AVGPOST=0.9983;RSQ=0.9413;ERATE=0.0003;THETA=0.0023;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58425742 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58425760 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7467;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58425956 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0034;AVGPOST=0.9992;RSQ=0.8926;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58426187 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.704;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7661;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58426241 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7393;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58426247 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7425;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58426379 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=0.9999;RSQ=0.9932;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58426497 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0068;AVGPOST=0.9994;RSQ=0.9615;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58426545 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0243;AVGPOST=0.9997;RSQ=0.9948;ERATE=0.0003;THETA=0.0005;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 58426556 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.954;LDAF=0.0494;AVGPOST=0.9937;RSQ=0.9555;ERATE=0.0004;THETA=0.0003;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 58426636 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58426896 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.978;LDAF=0.8633;AVGPOST=0.9965;RSQ=0.9875;ERATE=0.0006;THETA=0.0004;AC=1888;AN=2184 GT:DS:GL:BD 0.86446887 1 1 58426908 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.967;LDAF=0.3009;AVGPOST=0.9928;RSQ=0.9888;ERATE=0.0004;THETA=0.0002;AC=663;AN=2184 GT:DS:GL:BD 0.30357143 0 1 58426913 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.966;LDAF=0.3012;AVGPOST=0.9928;RSQ=0.9888;ERATE=0.0004;THETA=0.0003;AC=663;AN=2184 GT:DS:GL:BD 0.30357143 0 1 58426943 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.698;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4653;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58426997 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0029;AVGPOST=0.9992;RSQ=0.9143;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58427042 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5468;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58427159 . CT C 407 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0067;AVGPOST=0.9992;RSQ=0.9452;ERATE=0.0004;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58427270 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3054;AVGPOST=0.9989;RSQ=0.9982;ERATE=0.0003;THETA=0.0003;AC=667;AN=2184 GT:DS:GL:BD 0.30540293 0 1 58427294 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58427393 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.3056;AVGPOST=0.9973;RSQ=0.9950;ERATE=0.0007;THETA=0.0005;AC=667;AN=2184 GT:DS:GL:BD 0.30540293 0 1 58427510 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5049;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58427548 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0024;AVGPOST=0.9982;RSQ=0.6972;ERATE=0.0006;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58427567 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.968;LDAF=0.4940;AVGPOST=0.9771;RSQ=0.9701;ERATE=0.0022;THETA=0.0005;AC=1091;AN=2184 GT:DS:GL:BD 0.49954212 0 1 58427600 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.473;LDAF=0.0036;AVGPOST=0.9967;RSQ=0.6334;ERATE=0.0006;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58427639 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0075;AVGPOST=0.9982;RSQ=0.9034;ERATE=0.0005;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58427714 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0042;AVGPOST=0.9970;RSQ=0.7391;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58427790 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58427847 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0022;AVGPOST=0.9973;RSQ=0.5336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58427983 . C CATT 115 PASS INDEL;BAVGPOST=0.998;BRSQ=0.749;LDAF=0.0060;AVGPOST=0.9928;RSQ=0.5606;ERATE=0.0013;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58427986 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.792;LDAF=0.0030;AVGPOST=0.9978;RSQ=0.6998;ERATE=0.0006;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58428014 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0633;AVGPOST=0.9988;RSQ=0.9919;ERATE=0.0003;THETA=0.0003;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 58428108 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.901;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8497;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58428189 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6188;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58428196 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3051;AVGPOST=0.9993;RSQ=0.9987;ERATE=0.0004;THETA=0.0004;AC=667;AN=2184 GT:DS:GL:BD 0.30540293 0 1 58428207 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7585;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58428286 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.982;LDAF=0.8652;AVGPOST=0.9965;RSQ=0.9882;ERATE=0.0007;THETA=0.0003;AC=1889;AN=2184 GT:DS:GL:BD 0.86492676 1 1 58428310 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9346;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58428338 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3067;AVGPOST=0.9965;RSQ=0.9951;ERATE=0.0004;THETA=0.0003;AC=667;AN=2184 GT:DS:GL:BD 0.30540293 0 1 58428347 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.3059;AVGPOST=0.9983;RSQ=0.9971;ERATE=0.0004;THETA=0.0005;AC=668;AN=2184 GT:DS:GL:BD 0.30586082 0 1 58428372 . A AT 2275 PASS INDEL;BAVGPOST=0.975;BRSQ=0.780;LDAF=0.0778;AVGPOST=0.9367;RSQ=0.6543;ERATE=0.0154;THETA=0.0003;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 58428383 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.674;LDAF=0.0021;AVGPOST=0.9977;RSQ=0.5610;ERATE=0.0012;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58428545 . C CA 303 PASS INDEL;BAVGPOST=0.968;BRSQ=0.547;LDAF=0.0737;AVGPOST=0.9074;RSQ=0.4486;ERATE=0.0215;THETA=0.0004;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 58428551 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0037;AVGPOST=0.9972;RSQ=0.7169;ERATE=0.0006;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58428560 . AC A 487 PASS INDEL;BAVGPOST=0.977;BRSQ=0.584;LDAF=0.0325;AVGPOST=0.9697;RSQ=0.6376;ERATE=0.0060;THETA=0.0004;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 58428561 . C CA 103 PASS INDEL;BAVGPOST=0.984;BRSQ=0.563;LDAF=0.0341;AVGPOST=0.9563;RSQ=0.4688;ERATE=0.0096;THETA=0.0014;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 58428566 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.966;LDAF=0.2769;AVGPOST=0.9843;RSQ=0.9730;ERATE=0.0038;THETA=0.0013;AC=607;AN=2184 GT:DS:GL:BD 0.27793041 0 1 58428580 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5835;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58428581 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.800;LDAF=0.0027;AVGPOST=0.9968;RSQ=0.4994;ERATE=0.0011;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58428649 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.850;LDAF=0.0018;AVGPOST=0.9995;RSQ=0.8688;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58428663 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0124;AVGPOST=1.0000;RSQ=0.9982;ERATE=0.0003;THETA=0.0002;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58428673 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0112;AVGPOST=0.9995;RSQ=0.9806;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58428779 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4840;AVGPOST=0.9983;RSQ=0.9975;ERATE=0.0004;THETA=0.0002;AC=1056;AN=2184 GT:DS:GL:BD 0.48351648 0 1 58428822 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.800;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58428929 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6529;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58429018 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58429031 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6355;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58429070 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58429110 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0057;AVGPOST=0.9992;RSQ=0.9353;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58429116 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0027;AVGPOST=0.9977;RSQ=0.6861;ERATE=0.0017;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58429117 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.651;LDAF=0.0032;AVGPOST=0.9948;RSQ=0.3925;ERATE=0.0007;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58429142 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4833;AVGPOST=0.9972;RSQ=0.9956;ERATE=0.0007;THETA=0.0003;AC=1055;AN=2184 GT:DS:GL:BD 0.48305860 0 1 58429210 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0367;AVGPOST=0.9997;RSQ=0.9965;ERATE=0.0003;THETA=0.0013;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 58429292 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0028;AVGPOST=0.9988;RSQ=0.8662;ERATE=0.0003;THETA=0.0018;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58429302 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58429303 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58429344 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0268;AVGPOST=0.9993;RSQ=0.9877;ERATE=0.0004;THETA=0.0004;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 58429351 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9858;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58429445 . C CT 47311 PASS INDEL;BAVGPOST=0.995;BRSQ=0.941;LDAF=0.9607;AVGPOST=0.9897;RSQ=0.9002;ERATE=0.0030;THETA=0.0003;AC=2104;AN=2184 GT:DS:GL:BD 0.96336997 1 1 58429508 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0030;AVGPOST=0.9986;RSQ=0.8135;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58429580 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7196;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58429590 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0110;AVGPOST=1.0000;RSQ=0.9980;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58429857 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0041;AVGPOST=0.9986;RSQ=0.8643;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58429860 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5510;ERATE=0.0003;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58429948 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8316;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58429989 . ATTAAG A 273 PASS INDEL;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6025;ERATE=0.0004;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58430051 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.7288;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58430099 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0829;AVGPOST=0.9997;RSQ=0.9983;ERATE=0.0003;THETA=0.0017;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 58430114 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4083;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58430177 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6817;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58430196 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.3438;AVGPOST=0.9931;RSQ=0.9895;ERATE=0.0009;THETA=0.0057;AC=749;AN=2184 GT:DS:GL:BD 0.34294870 0 1 58430221 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9650;ERATE=0.0003;THETA=0.0013;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58430385 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58430402 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.6151;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58430470 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58430492 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5603;AVGPOST=0.9958;RSQ=0.9945;ERATE=0.0007;THETA=0.0003;AC=1222;AN=2184 GT:DS:GL:BD 0.55952382 1 1 58430524 . TA T 86 PASS INDEL;BAVGPOST=0.999;BRSQ=0.656;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8519;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58430591 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.595;LDAF=0.0033;AVGPOST=0.9973;RSQ=0.6580;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58430592 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0259;AVGPOST=0.9994;RSQ=0.9882;ERATE=0.0004;THETA=0.0004;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 58430611 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8821;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58430664 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0104;AVGPOST=0.9993;RSQ=0.9735;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58430757 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.738;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6015;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58430786 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58430807 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.707;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.5741;ERATE=0.0004;THETA=0.0026;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58430920 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.720;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6980;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58431014 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0250;AVGPOST=0.9994;RSQ=0.9922;ERATE=0.0003;THETA=0.0049;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 58431083 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0032;AVGPOST=0.9987;RSQ=0.8390;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58431112 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.0723;AVGPOST=0.9984;RSQ=0.9904;ERATE=0.0003;THETA=0.0003;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 58431135 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5695;AVGPOST=0.9985;RSQ=0.9978;ERATE=0.0003;THETA=0.0004;AC=1243;AN=2184 GT:DS:GL:BD 0.56913918 1 1 58431201 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.698;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58431317 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6534;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58431544 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7921;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58431561 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9718;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58431613 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.929;LDAF=0.0842;AVGPOST=0.9904;RSQ=0.9568;ERATE=0.0006;THETA=0.0007;AC=179;AN=2184 GT:DS:GL:BD 0.08195971 0 1 58431614 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6237;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58431682 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.0572;AVGPOST=0.9999;RSQ=0.9989;ERATE=0.0003;THETA=0.0002;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 58431690 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.9029;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58431749 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0066;AVGPOST=0.9997;RSQ=0.9776;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58431788 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0626;AVGPOST=0.9980;RSQ=0.9871;ERATE=0.0004;THETA=0.0004;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 58431788 . AG A 97 PASS INDEL;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5729;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58431848 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8569;AVGPOST=0.9987;RSQ=0.9966;ERATE=0.0003;THETA=0.0004;AC=1872;AN=2184 GT:DS:GL:BD 0.85714287 1 1 58431851 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58431868 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0051;AVGPOST=0.9997;RSQ=0.9701;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58432141 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7715;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58432162 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0020;AVGPOST=0.9975;RSQ=0.6071;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58432175 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0573;AVGPOST=0.9996;RSQ=0.9973;ERATE=0.0003;THETA=0.0003;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 58432201 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0571;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 58432276 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0573;AVGPOST=0.9997;RSQ=0.9978;ERATE=0.0003;THETA=0.0007;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 58432308 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0253;AVGPOST=0.9992;RSQ=0.9875;ERATE=0.0003;THETA=0.0006;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 58432362 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58432407 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6077;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58432524 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7682;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58432549 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7822;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58432550 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58432610 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58432630 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5293;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58432631 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7855;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58432690 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0136;AVGPOST=0.9992;RSQ=0.9776;ERATE=0.0004;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 58432700 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6610;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58432732 . TAC T 41 PASS INDEL;BAVGPOST=0.992;BRSQ=0.633;LDAF=0.0195;AVGPOST=0.9777;RSQ=0.5502;ERATE=0.0086;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58432737 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7251;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58432755 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3060;AVGPOST=0.9985;RSQ=0.9975;ERATE=0.0004;THETA=0.0002;AC=668;AN=2184 GT:DS:GL:BD 0.30586082 0 1 58432781 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6798;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58432782 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6118;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58432909 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5054;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58432927 . TA T 6908 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0572;AVGPOST=0.9989;RSQ=0.9913;ERATE=0.0005;THETA=0.0003;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 58433135 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8290;ERATE=0.0008;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58433167 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8037;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58433203 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6200;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58433288 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.855;LDAF=0.0043;AVGPOST=0.9976;RSQ=0.7759;ERATE=0.0004;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58433289 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0105;AVGPOST=0.9999;RSQ=0.9937;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58433309 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5188;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58433369 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6586;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58433412 rs66590183 TTAAA T 56363 PASS INDEL;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2840;AVGPOST=0.9969;RSQ=0.9944;ERATE=0.0005;THETA=0.0002;AC=621;AN=2184 GT:DS:GL:BD 0.28434065 0 1 58433463 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.735;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6351;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58433491 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0107;AVGPOST=0.9995;RSQ=0.9800;ERATE=0.0003;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58433589 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.3565;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58433621 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6065;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58433647 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0066;AVGPOST=0.9988;RSQ=0.9251;ERATE=0.0003;THETA=0.0010;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58433663 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5607;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58433774 . ATG A 81 PASS INDEL;BAVGPOST=0.990;BRSQ=0.635;LDAF=0.0217;AVGPOST=0.9769;RSQ=0.5857;ERATE=0.0080;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 58434003 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0394;AVGPOST=0.9959;RSQ=0.9635;ERATE=0.0003;THETA=0.0010;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 58434167 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7587;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58434331 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.582;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4819;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58434404 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.5685;AVGPOST=0.9959;RSQ=0.9943;ERATE=0.0004;THETA=0.0005;AC=1238;AN=2184 GT:DS:GL:BD 0.56684983 1 1 58434473 . A AG 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0024;AVGPOST=0.9967;RSQ=0.4718;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58434572 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.8758;AVGPOST=0.9985;RSQ=0.9946;ERATE=0.0003;THETA=0.0005;AC=1913;AN=2184 GT:DS:GL:BD 0.87591577 1 1 58434689 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.890;LDAF=0.0136;AVGPOST=0.9972;RSQ=0.9232;ERATE=0.0006;THETA=0.0006;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 58434698 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0035;AVGPOST=0.9987;RSQ=0.8620;ERATE=0.0004;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58434719 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.664;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7701;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58434723 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5667;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58434862 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.737;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8276;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58434949 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0576;AVGPOST=0.9984;RSQ=0.9879;ERATE=0.0005;THETA=0.0004;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 58434974 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.909;LDAF=0.0086;AVGPOST=0.9985;RSQ=0.9300;ERATE=0.0005;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58435026 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0107;AVGPOST=0.9988;RSQ=0.9522;ERATE=0.0004;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58435125 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.833;LDAF=0.0046;AVGPOST=0.9982;RSQ=0.8216;ERATE=0.0006;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58435219 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5530;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58435250 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0029;AVGPOST=0.9991;RSQ=0.8688;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58435370 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0023;AVGPOST=0.9998;RSQ=0.9548;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58435385 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0010;AVGPOST=0.9984;RSQ=0.3702;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58435534 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0572;AVGPOST=0.9995;RSQ=0.9958;ERATE=0.0003;THETA=0.0006;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 58435561 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.799;LDAF=0.0061;AVGPOST=0.9966;RSQ=0.7837;ERATE=0.0005;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58435608 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6616;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58435612 . CT C 2660 PASS INDEL;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0253;AVGPOST=0.9985;RSQ=0.9781;ERATE=0.0004;THETA=0.0005;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 58435664 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58435688 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0098;AVGPOST=0.9997;RSQ=0.9841;ERATE=0.0004;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58435710 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.726;LDAF=0.0024;AVGPOST=0.9969;RSQ=0.5685;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58435727 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0197;AVGPOST=0.9999;RSQ=0.9971;ERATE=0.0003;THETA=0.0005;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 58435741 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.7958;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58435796 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5408;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58435824 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6981;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58435863 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0037;AVGPOST=0.9992;RSQ=0.9150;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58435864 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7921;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58435964 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0019;AVGPOST=0.9977;RSQ=0.5706;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58436045 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.820;LDAF=0.0032;AVGPOST=0.9989;RSQ=0.8633;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58436054 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58436059 . T TG 1296 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0261;AVGPOST=0.9981;RSQ=0.9696;ERATE=0.0004;THETA=0.0004;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 58436062 . G GT 140 PASS INDEL;BAVGPOST=0.957;BRSQ=0.381;LDAF=0.0825;AVGPOST=0.9160;RSQ=0.5630;ERATE=0.0035;THETA=0.0003;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 58436120 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8261;AVGPOST=0.9974;RSQ=0.9931;ERATE=0.0004;THETA=0.0003;AC=1805;AN=2184 GT:DS:GL:BD 0.82646519 1 1 58436137 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.845;LDAF=0.0069;AVGPOST=0.9962;RSQ=0.7678;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58436152 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6141;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58436192 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9344;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58436331 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58436351 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0572;AVGPOST=0.9999;RSQ=0.9989;ERATE=0.0003;THETA=0.0002;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 58436539 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.864;LDAF=0.0119;AVGPOST=0.9963;RSQ=0.8761;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58436548 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.816;LDAF=0.0093;AVGPOST=0.9978;RSQ=0.8982;ERATE=0.0003;THETA=0.0009;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58436758 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0004;AVGPOST=0.9995;RSQ=0.5285;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58436784 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.907;LDAF=0.0181;AVGPOST=0.9973;RSQ=0.9446;ERATE=0.0003;THETA=0.0007;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 58436875 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7778;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58436902 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58436991 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.989;LDAF=0.2357;AVGPOST=0.9946;RSQ=0.9904;ERATE=0.0005;THETA=0.0005;AC=516;AN=2184 GT:DS:GL:BD 0.23626374 0 1 58437008 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.9078;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58437082 . CA C 1163 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0065;AVGPOST=0.9997;RSQ=0.9798;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58437133 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.983;LDAF=0.0798;AVGPOST=0.9983;RSQ=0.9910;ERATE=0.0004;THETA=0.0004;AC=175;AN=2184 GT:DS:GL:BD 0.08012821 0 1 58437183 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9682;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58437353 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7912;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58437371 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.853;LDAF=0.0097;AVGPOST=0.9973;RSQ=0.8849;ERATE=0.0006;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58437375 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7216;ERATE=0.0007;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58437610 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7093;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58437655 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9731;AVGPOST=0.9992;RSQ=0.9908;ERATE=0.0003;THETA=0.0003;AC=2125;AN=2184 GT:DS:GL:BD 0.97298533 1 1 58437666 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0682;AVGPOST=0.9988;RSQ=0.9924;ERATE=0.0004;THETA=0.0004;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 58437715 . CA C 43 PASS INDEL;BAVGPOST=1.000;BRSQ=0.762;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4583;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58437725 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0676;AVGPOST=0.9998;RSQ=0.9987;ERATE=0.0003;THETA=0.0004;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 58437915 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9213;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58437930 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58437963 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.7868;AVGPOST=0.9983;RSQ=0.9958;ERATE=0.0006;THETA=0.0005;AC=1718;AN=2184 GT:DS:GL:BD 0.78663003 1 1 58438011 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7386;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58438118 . T TG 63 PASS INDEL;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5124;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58438284 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6782;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58438356 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0185;AVGPOST=0.9982;RSQ=0.9639;ERATE=0.0004;THETA=0.0010;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 58438357 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9795;AVGPOST=0.9991;RSQ=0.9835;ERATE=0.0003;THETA=0.0004;AC=2139;AN=2184 GT:DS:GL:BD 0.97939563 1 1 58438415 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58438466 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7564;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58438639 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58438642 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0184;AVGPOST=0.9992;RSQ=0.9830;ERATE=0.0004;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 58438705 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7230;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58438841 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6817;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58438977 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8757;AVGPOST=0.9998;RSQ=0.9990;ERATE=0.0003;THETA=0.0002;AC=1912;AN=2184 GT:DS:GL:BD 0.87545788 1 1 58439026 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9344;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58439042 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58439160 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5835;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58439174 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.803;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5712;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58439229 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8448;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58439313 . A AG 20692 PASS INDEL;BAVGPOST=0.983;BRSQ=0.974;LDAF=0.5498;AVGPOST=0.9629;RSQ=0.9490;ERATE=0.0109;THETA=0.0004;AC=1212;AN=2184 GT:DS:GL:BD 0.55494505 1 1 58439316 rs35172824 G GT 68394 PASS INDEL;BAVGPOST=0.990;BRSQ=0.985;LDAF=0.5658;AVGPOST=0.9952;RSQ=0.9930;ERATE=0.0005;THETA=0.0013;AC=1235;AN=2184 GT:DS:GL:BD 0.56547618 1 1 58439378 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.626;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8656;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58439429 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9735;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58439497 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=1.0000;RSQ=0.9966;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58439556 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5453;AVGPOST=0.9990;RSQ=0.9985;ERATE=0.0004;THETA=0.0002;AC=1190;AN=2184 GT:DS:GL:BD 0.54487181 1 1 58439704 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8685;ERATE=0.0008;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58439896 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0016;AVGPOST=0.9980;RSQ=0.6245;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58439935 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.726;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5403;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58439962 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5443;AVGPOST=0.9989;RSQ=0.9983;ERATE=0.0004;THETA=0.0003;AC=1188;AN=2184 GT:DS:GL:BD 0.54395604 1 1 58439980 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9679;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58439989 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7501;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58440073 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4392;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58440160 . T TTA 20 PASS INDEL;BAVGPOST=0.998;BRSQ=0.617;LDAF=0.0070;AVGPOST=0.9888;RSQ=0.3585;ERATE=0.0020;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58440177 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0187;AVGPOST=0.9990;RSQ=0.9773;ERATE=0.0004;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 58440189 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.961;LDAF=0.9304;AVGPOST=0.9797;RSQ=0.8997;ERATE=0.0023;THETA=0.0003;AC=2043;AN=2184 GT:DS:GL:BD 0.93543959 1 1 58440227 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5347;AVGPOST=0.9986;RSQ=0.9978;ERATE=0.0005;THETA=0.0005;AC=1167;AN=2184 GT:DS:GL:BD 0.53434068 1 1 58440281 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9592;AVGPOST=0.9997;RSQ=0.9972;ERATE=0.0003;THETA=0.0005;AC=2095;AN=2184 GT:DS:GL:BD 0.95924908 1 1 58440411 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58440514 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.880;LDAF=0.0094;AVGPOST=0.9949;RSQ=0.7977;ERATE=0.0004;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58440517 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0019;AVGPOST=0.9982;RSQ=0.6523;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58440679 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8037;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58440710 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4801;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58440763 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0186;AVGPOST=0.9994;RSQ=0.9864;ERATE=0.0004;THETA=0.0006;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 58441103 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9593;AVGPOST=1.0000;RSQ=0.9995;ERATE=0.0003;THETA=0.0007;AC=2095;AN=2184 GT:DS:GL:BD 0.95924908 1 1 58441125 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9773;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58441151 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7357;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58441211 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0036;AVGPOST=0.9978;RSQ=0.7687;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58441303 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.8573;AVGPOST=0.9991;RSQ=0.9971;ERATE=0.0004;THETA=0.0004;AC=1872;AN=2184 GT:DS:GL:BD 0.85714287 1 1 58441340 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0185;AVGPOST=0.9995;RSQ=0.9898;ERATE=0.0003;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 58441361 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8083;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58441394 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9660;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58441395 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2862;AVGPOST=0.9984;RSQ=0.9972;ERATE=0.0005;THETA=0.0005;AC=625;AN=2184 GT:DS:GL:BD 0.28617215 0 1 58441407 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.987;LDAF=0.2343;AVGPOST=0.9935;RSQ=0.9868;ERATE=0.0006;THETA=0.0005;AC=509;AN=2184 GT:DS:GL:BD 0.23305860 0 1 58441433 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.843;LDAF=0.0085;AVGPOST=0.9958;RSQ=0.7993;ERATE=0.0003;THETA=0.0010;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58441530 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58441581 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0027;AVGPOST=0.9995;RSQ=0.9194;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58441644 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8648;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58441646 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7948;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58441667 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5665;AVGPOST=0.9978;RSQ=0.9967;ERATE=0.0004;THETA=0.0006;AC=1238;AN=2184 GT:DS:GL:BD 0.56684983 1 1 58441765 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9703;AVGPOST=0.9991;RSQ=0.9909;ERATE=0.0003;THETA=0.0003;AC=2119;AN=2184 GT:DS:GL:BD 0.97023809 1 1 58441800 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6644;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58441860 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.984;LDAF=0.1228;AVGPOST=0.9950;RSQ=0.9824;ERATE=0.0003;THETA=0.0003;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 58441923 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.7656;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58442213 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.623;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58442235 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7952;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58442243 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0248;AVGPOST=0.9996;RSQ=0.9923;ERATE=0.0003;THETA=0.0003;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 58442274 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7587;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58442348 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0124;AVGPOST=0.9994;RSQ=0.9804;ERATE=0.0003;THETA=0.0002;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58442498 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58442574 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0072;AVGPOST=0.9984;RSQ=0.9123;ERATE=0.0003;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58442824 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0577;AVGPOST=0.9983;RSQ=0.9891;ERATE=0.0003;THETA=0.0005;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 58443036 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9585;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58443059 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9137;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58443065 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9802;AVGPOST=0.9996;RSQ=0.9921;ERATE=0.0003;THETA=0.0006;AC=2141;AN=2184 GT:DS:GL:BD 0.98031133 1 1 58443103 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.730;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8141;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58443122 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5869;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58443123 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0109;AVGPOST=0.9992;RSQ=0.9676;ERATE=0.0003;THETA=0.0002;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58443141 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5910;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58443198 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7870;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58443199 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0028;AVGPOST=0.9980;RSQ=0.7187;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58443213 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0677;AVGPOST=0.9998;RSQ=0.9987;ERATE=0.0003;THETA=0.0004;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 58443254 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6425;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58443526 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58443546 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5001;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58443699 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7085;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58443709 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.974;LDAF=0.0676;AVGPOST=0.9996;RSQ=0.9972;ERATE=0.0003;THETA=0.0002;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 58443715 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58443728 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0074;AVGPOST=0.9992;RSQ=0.9559;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58443749 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0852;AVGPOST=0.9989;RSQ=0.9940;ERATE=0.0004;THETA=0.0003;AC=187;AN=2184 GT:DS:GL:BD 0.08562271 0 1 58443774 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5321;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58443906 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6077;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58443937 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6377;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58443964 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0396;AVGPOST=0.9971;RSQ=0.9690;ERATE=0.0005;THETA=0.0005;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 58444058 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0020;AVGPOST=0.9978;RSQ=0.5358;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58444074 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0095;AVGPOST=0.9988;RSQ=0.9463;ERATE=0.0004;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58444102 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0112;AVGPOST=0.9994;RSQ=0.9785;ERATE=0.0003;THETA=0.0007;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 58444127 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0027;AVGPOST=0.9987;RSQ=0.7955;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58444148 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58444258 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.963;LDAF=0.9568;AVGPOST=0.9972;RSQ=0.9749;ERATE=0.0005;THETA=0.0003;AC=2091;AN=2184 GT:DS:GL:BD 0.95741761 1 1 58444338 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.919;LDAF=0.7413;AVGPOST=0.9339;RSQ=0.8662;ERATE=0.0287;THETA=0.0003;AC=1658;AN=2184 GT:DS:GL:BD 0.75915754 1 1 58444453 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0199;AVGPOST=0.9993;RSQ=0.9857;ERATE=0.0004;THETA=0.0004;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 58444480 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.829;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7620;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58444579 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0010;AVGPOST=0.9987;RSQ=0.4967;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58444701 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5951;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58444927 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9512;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58444956 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6276;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58445097 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.759;LDAF=0.0007;AVGPOST=0.9989;RSQ=0.3772;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58445210 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.747;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.5856;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58445214 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.986;LDAF=0.0802;AVGPOST=0.9978;RSQ=0.9876;ERATE=0.0004;THETA=0.0003;AC=174;AN=2184 GT:DS:GL:BD 0.07967033 0 1 58445456 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.806;LDAF=0.0050;AVGPOST=0.9974;RSQ=0.7743;ERATE=0.0006;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58445462 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0207;AVGPOST=0.9992;RSQ=0.9848;ERATE=0.0003;THETA=0.0002;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 58445608 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.4904;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58445630 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7703;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58445653 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0070;AVGPOST=0.9996;RSQ=0.9750;ERATE=0.0004;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58445657 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0256;AVGPOST=0.9989;RSQ=0.9837;ERATE=0.0003;THETA=0.0005;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 58445704 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0065;AVGPOST=0.9980;RSQ=0.8978;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58445725 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9723;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58445767 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5664;AVGPOST=0.9965;RSQ=0.9953;ERATE=0.0006;THETA=0.0005;AC=1235;AN=2184 GT:DS:GL:BD 0.56547618 1 1 58445905 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.689;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.7021;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58445950 rs72500904 T TCA 32986 PASS INDEL;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.5654;AVGPOST=0.9803;RSQ=0.9732;ERATE=0.0050;THETA=0.0004;AC=1238;AN=2184 GT:DS:GL:BD 0.56684983 1 1 58446150 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0025;AVGPOST=0.9983;RSQ=0.7478;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58446172 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.811;LDAF=0.0031;AVGPOST=0.9979;RSQ=0.7207;ERATE=0.0006;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58446215 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6883;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58446448 . GT G 2487 PASS INDEL;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0251;AVGPOST=0.9990;RSQ=0.9824;ERATE=0.0004;THETA=0.0004;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 58446562 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.960;LDAF=0.0250;AVGPOST=0.9988;RSQ=0.9780;ERATE=0.0004;THETA=0.0005;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 58446584 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.658;LDAF=0.0420;AVGPOST=0.9559;RSQ=0.5794;ERATE=0.0061;THETA=0.0002;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 58446644 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.5361;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58446652 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0048;AVGPOST=0.9972;RSQ=0.7959;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58446738 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0574;AVGPOST=0.9994;RSQ=0.9952;ERATE=0.0003;THETA=0.0004;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 58446953 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0048;AVGPOST=0.9993;RSQ=0.9447;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58446971 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0028;AVGPOST=0.9970;RSQ=0.5749;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58446985 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0574;AVGPOST=0.9995;RSQ=0.9956;ERATE=0.0003;THETA=0.0004;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 58447070 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58447189 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9489;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58447425 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6606;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58447443 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58447476 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0101;AVGPOST=0.9989;RSQ=0.9526;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58447496 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0252;AVGPOST=0.9999;RSQ=0.9974;ERATE=0.0003;THETA=0.0004;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 58447545 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8795;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58447565 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0571;AVGPOST=0.9999;RSQ=0.9992;ERATE=0.0003;THETA=0.0003;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 58447692 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.9696;AVGPOST=0.9984;RSQ=0.9830;ERATE=0.0004;THETA=0.0003;AC=2117;AN=2184 GT:DS:GL:BD 0.96932232 1 1 58447708 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.875;LDAF=0.0053;AVGPOST=0.9977;RSQ=0.8492;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58447744 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.637;LDAF=0.0013;AVGPOST=0.9996;RSQ=0.8721;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58447776 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.4781;AVGPOST=0.9983;RSQ=0.9971;ERATE=0.0003;THETA=0.0005;AC=1043;AN=2184 GT:DS:GL:BD 0.47756410 0 1 58447820 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0048;AVGPOST=0.9994;RSQ=0.9621;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58447835 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0049;AVGPOST=0.9980;RSQ=0.8396;ERATE=0.0007;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58447840 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0087;AVGPOST=0.9990;RSQ=0.9569;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58447870 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5758;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58447885 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0195;AVGPOST=0.9983;RSQ=0.9677;ERATE=0.0003;THETA=0.0005;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 58447952 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.938;LDAF=0.0097;AVGPOST=0.9979;RSQ=0.9212;ERATE=0.0004;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58448070 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0253;AVGPOST=0.9988;RSQ=0.9840;ERATE=0.0003;THETA=0.0002;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 58448103 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.939;LDAF=0.0106;AVGPOST=0.9979;RSQ=0.9254;ERATE=0.0003;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58448131 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0255;AVGPOST=0.9992;RSQ=0.9884;ERATE=0.0004;THETA=0.0007;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 58448146 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0133;AVGPOST=0.9999;RSQ=0.9953;ERATE=0.0003;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 58448270 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58448390 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58448604 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.7986;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58448615 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4828;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58448717 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0031;AVGPOST=0.9998;RSQ=0.9666;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58448745 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6809;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58448771 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8570;AVGPOST=0.9993;RSQ=0.9979;ERATE=0.0003;THETA=0.0003;AC=1872;AN=2184 GT:DS:GL:BD 0.85714287 1 1 58448884 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.8520;AVGPOST=0.9983;RSQ=0.9951;ERATE=0.0004;THETA=0.0004;AC=1860;AN=2184 GT:DS:GL:BD 0.85164833 1 1 58448897 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7727;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58448900 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8222;ERATE=0.0005;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58449000 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.8018;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58449147 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0197;AVGPOST=0.9998;RSQ=0.9962;ERATE=0.0003;THETA=0.0005;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 58449156 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.830;LDAF=0.0085;AVGPOST=0.9967;RSQ=0.8414;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58449266 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.666;LDAF=0.0025;AVGPOST=0.9970;RSQ=0.5477;ERATE=0.0012;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58449645 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0186;AVGPOST=0.9992;RSQ=0.9831;ERATE=0.0004;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 58449669 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8434;AVGPOST=0.9987;RSQ=0.9959;ERATE=0.0005;THETA=0.0002;AC=1842;AN=2184 GT:DS:GL:BD 0.84340662 1 1 58449689 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5752;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58449836 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.741;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8182;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58449840 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9689;ERATE=0.0003;THETA=0.0013;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58449856 rs72119036 AAAAG A 2238 PASS INDEL;BAVGPOST=0.604;BRSQ=0.194;LDAF=0.3404;AVGPOST=0.6635;RSQ=0.3335;ERATE=0.0331;THETA=0.0005;AC=533;AN=2184 GT:DS:GL:BD 0.24404761 0 1 58449863 rs67297788 AG A 484 PASS INDEL;BAVGPOST=0.934;BRSQ=0.502;LDAF=0.1108;AVGPOST=0.8729;RSQ=0.4550;ERATE=0.0271;THETA=0.0005;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 58449908 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.686;LDAF=0.0153;AVGPOST=0.9914;RSQ=0.7935;ERATE=0.0004;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58449912 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.820;LDAF=0.0080;AVGPOST=0.9963;RSQ=0.8218;ERATE=0.0005;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58449928 rs71051264 GAA G 1791 PASS INDEL;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0212;AVGPOST=0.9995;RSQ=0.9900;ERATE=0.0004;THETA=0.0003;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 58449936 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.766;LDAF=0.0206;AVGPOST=0.9841;RSQ=0.6888;ERATE=0.0027;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 58449989 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.685;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6474;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58450029 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8841;AVGPOST=0.9994;RSQ=0.9971;ERATE=0.0003;THETA=0.0015;AC=1931;AN=2184 GT:DS:GL:BD 0.88415754 1 1 58450088 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58450272 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5730;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58450360 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0021;AVGPOST=0.9982;RSQ=0.6999;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58450408 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.0809;AVGPOST=0.9996;RSQ=0.9973;ERATE=0.0003;THETA=0.0003;AC=177;AN=2184 GT:DS:GL:BD 0.08104396 0 1 58450456 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.970;LDAF=0.8557;AVGPOST=0.9864;RSQ=0.9604;ERATE=0.0037;THETA=0.0004;AC=1874;AN=2184 GT:DS:GL:BD 0.85805863 1 1 58450546 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8674;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58450560 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0054;AVGPOST=0.9992;RSQ=0.9482;ERATE=0.0003;THETA=0.0021;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58450589 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0280;AVGPOST=0.9997;RSQ=0.9945;ERATE=0.0004;THETA=0.0003;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 58450618 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.7089;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58450728 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0085;AVGPOST=0.9995;RSQ=0.9742;ERATE=0.0004;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58450734 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58450792 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.731;LDAF=0.0025;AVGPOST=0.9992;RSQ=0.8707;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58450793 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58450794 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7340;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58450804 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.984;LDAF=0.2863;AVGPOST=0.9940;RSQ=0.9902;ERATE=0.0009;THETA=0.0005;AC=626;AN=2184 GT:DS:GL:BD 0.28663003 0 1 58450853 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.6127;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58450889 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0083;AVGPOST=0.9998;RSQ=0.9870;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58451042 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.852;LDAF=0.0061;AVGPOST=0.9966;RSQ=0.7661;ERATE=0.0004;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58451087 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5882;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58451109 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58451143 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9991;RSQ=0.8921;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58451244 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=1.0000;RSQ=0.9966;ERATE=0.0003;THETA=0.0017;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58451267 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58451286 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5381;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58451352 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0007;AVGPOST=0.9989;RSQ=0.3232;ERATE=0.0004;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 58451401 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7258;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58451542 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5518;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58451593 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0243;AVGPOST=0.9998;RSQ=0.9956;ERATE=0.0003;THETA=0.0003;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 58451620 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5817;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58451741 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.8119;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58451895 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.548;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6353;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58452020 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.7434;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58452079 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0212;AVGPOST=0.9997;RSQ=0.9952;ERATE=0.0003;THETA=0.0002;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 58452266 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58452314 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.8768;AVGPOST=0.9991;RSQ=0.9961;ERATE=0.0004;THETA=0.0005;AC=1915;AN=2184 GT:DS:GL:BD 0.87683153 1 1 58452426 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8596;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58452521 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9323;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58452627 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58452695 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58452842 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0111;AVGPOST=0.9979;RSQ=0.9369;ERATE=0.0003;THETA=0.0002;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58452848 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6396;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58452893 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.8835;AVGPOST=0.9995;RSQ=0.9979;ERATE=0.0003;THETA=0.0003;AC=1929;AN=2184 GT:DS:GL:BD 0.88324177 1 1 58453055 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0029;AVGPOST=0.9993;RSQ=0.9134;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58453057 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0102;AVGPOST=0.9992;RSQ=0.9757;ERATE=0.0003;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58453112 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5526;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58453161 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0105;AVGPOST=1.0000;RSQ=0.9979;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58453304 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.5685;AVGPOST=0.9982;RSQ=0.9972;ERATE=0.0004;THETA=0.0002;AC=1242;AN=2184 GT:DS:GL:BD 0.56868130 1 1 58453415 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5967;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58453474 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5954;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58453502 . G GT 1666 PASS INDEL;BAVGPOST=0.997;BRSQ=0.963;LDAF=0.0286;AVGPOST=0.9984;RSQ=0.9757;ERATE=0.0005;THETA=0.0018;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 58453510 . G GT 939 PASS INDEL;BAVGPOST=0.995;BRSQ=0.798;LDAF=0.0203;AVGPOST=0.9805;RSQ=0.6402;ERATE=0.0036;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58453587 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0006;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58453603 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0005;AVGPOST=0.9994;RSQ=0.5060;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58453741 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8303;ERATE=0.0003;THETA=0.0048;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58453801 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.4542;AVGPOST=0.9919;RSQ=0.9889;ERATE=0.0027;THETA=0.0007;AC=991;AN=2184 GT:DS:GL:BD 0.45375457 0 1 58453803 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6401;AVGPOST=0.9961;RSQ=0.9944;ERATE=0.0004;THETA=0.0003;AC=1397;AN=2184 GT:DS:GL:BD 0.63965201 1 1 58453817 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6571;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58453850 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5412;ERATE=0.0003;THETA=0.0147;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58453923 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58453996 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0070;AVGPOST=0.9988;RSQ=0.9264;ERATE=0.0004;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58454006 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0198;AVGPOST=0.9983;RSQ=0.9690;ERATE=0.0005;THETA=0.0002;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 58454400 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58454405 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7908;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58454436 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.920;LDAF=0.0356;AVGPOST=0.9936;RSQ=0.9340;ERATE=0.0004;THETA=0.0015;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 58454447 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0018;AVGPOST=0.9996;RSQ=0.9081;ERATE=0.0003;THETA=0.0038;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58454589 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58454632 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58454660 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0210;AVGPOST=1.0000;RSQ=0.9991;ERATE=0.0003;THETA=0.0004;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 58454701 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9429;ERATE=0.0003;THETA=0.0034;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58454784 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.4822;AVGPOST=0.9958;RSQ=0.9941;ERATE=0.0004;THETA=0.0002;AC=1054;AN=2184 GT:DS:GL:BD 0.48260072 0 1 58454930 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0211;AVGPOST=0.9999;RSQ=0.9973;ERATE=0.0003;THETA=0.0003;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 58454944 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58455019 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58455187 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0221;AVGPOST=0.9998;RSQ=0.9959;ERATE=0.0003;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 58455307 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58455381 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0229;AVGPOST=0.9995;RSQ=0.9917;ERATE=0.0006;THETA=0.0007;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 58455428 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58455511 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58455538 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8331;AVGPOST=0.9998;RSQ=0.9993;ERATE=0.0003;THETA=0.0005;AC=1819;AN=2184 GT:DS:GL:BD 0.83287543 1 1 58455603 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9122;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58455607 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0086;AVGPOST=0.9990;RSQ=0.9548;ERATE=0.0004;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58455642 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8549;AVGPOST=0.9995;RSQ=0.9982;ERATE=0.0004;THETA=0.0005;AC=1867;AN=2184 GT:DS:GL:BD 0.85485345 1 1 58455687 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8803;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58455729 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7560;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58455738 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0022;AVGPOST=0.9996;RSQ=0.9318;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58455834 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.806;LDAF=0.0025;AVGPOST=0.9984;RSQ=0.7450;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58455897 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9995;RSQ=0.9737;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58455914 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58456059 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8388;ERATE=0.0011;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58456076 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2435;AVGPOST=0.9981;RSQ=0.9969;ERATE=0.0003;THETA=0.0003;AC=531;AN=2184 GT:DS:GL:BD 0.24313186 0 1 58456116 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58456223 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0164;AVGPOST=0.9993;RSQ=0.9816;ERATE=0.0003;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 58456230 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0067;AVGPOST=0.9994;RSQ=0.9599;ERATE=0.0004;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58456287 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7298;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58456328 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1411;AVGPOST=0.9953;RSQ=0.9856;ERATE=0.0004;THETA=0.0003;AC=308;AN=2184 GT:DS:GL:BD 0.14102565 0 1 58456424 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.859;LDAF=0.0063;AVGPOST=0.9989;RSQ=0.9334;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58456432 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0220;AVGPOST=1.0000;RSQ=0.9991;ERATE=0.0003;THETA=0.0005;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 58456463 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58456474 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.932;LDAF=0.0216;AVGPOST=0.9963;RSQ=0.9266;ERATE=0.0003;THETA=0.0003;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 58456526 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.9757;AVGPOST=0.9996;RSQ=0.9936;ERATE=0.0003;THETA=0.0004;AC=2131;AN=2184 GT:DS:GL:BD 0.97573262 1 1 58456582 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0221;AVGPOST=0.9997;RSQ=0.9943;ERATE=0.0003;THETA=0.0005;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 58456618 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58456701 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8086;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58456722 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0267;AVGPOST=0.9995;RSQ=0.9925;ERATE=0.0003;THETA=0.0005;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 58456806 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0225;AVGPOST=0.9990;RSQ=0.9884;ERATE=0.0003;THETA=0.0023;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 58456853 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58456885 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0041;AVGPOST=0.9990;RSQ=0.8893;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58456899 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58457059 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58457071 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7529;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58457193 rs112486716 GC G 821 PASS INDEL;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0079;AVGPOST=0.9988;RSQ=0.9413;ERATE=0.0004;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58457297 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5286;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58457335 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.788;LDAF=0.0047;AVGPOST=0.9973;RSQ=0.7691;ERATE=0.0005;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58457353 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8161;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58457473 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0084;AVGPOST=0.9988;RSQ=0.9510;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58457536 . A AAAAC 1748 PASS INDEL;BAVGPOST=0.966;BRSQ=0.668;LDAF=0.0717;AVGPOST=0.9263;RSQ=0.5713;ERATE=0.0119;THETA=0.0003;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 58457604 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0524;AVGPOST=0.9984;RSQ=0.9868;ERATE=0.0003;THETA=0.0003;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 58457616 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0220;AVGPOST=0.9999;RSQ=0.9982;ERATE=0.0003;THETA=0.0002;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 58457658 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.4088;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58457761 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58457799 . C CA 787 PASS INDEL;BAVGPOST=0.997;BRSQ=0.807;LDAF=0.0078;AVGPOST=0.9953;RSQ=0.7809;ERATE=0.0007;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58457828 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.9507;AVGPOST=0.9993;RSQ=0.9948;ERATE=0.0004;THETA=0.0003;AC=2076;AN=2184 GT:DS:GL:BD 0.95054942 1 1 58457851 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0091;AVGPOST=0.9976;RSQ=0.9284;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58457852 . A AG 22 PASS INDEL;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.5548;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58457944 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0222;AVGPOST=0.9995;RSQ=0.9907;ERATE=0.0003;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 58457959 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.9733;AVGPOST=0.9993;RSQ=0.9889;ERATE=0.0003;THETA=0.0003;AC=2126;AN=2184 GT:DS:GL:BD 0.97344321 1 1 58457990 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0221;AVGPOST=0.9993;RSQ=0.9883;ERATE=0.0003;THETA=0.0010;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 58458183 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1271;AVGPOST=0.9988;RSQ=0.9952;ERATE=0.0004;THETA=0.0003;AC=278;AN=2184 GT:DS:GL:BD 0.12728938 0 1 58458280 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0231;AVGPOST=0.9990;RSQ=0.9857;ERATE=0.0003;THETA=0.0004;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 58458311 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0220;AVGPOST=0.9999;RSQ=0.9974;ERATE=0.0003;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 58458410 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58458432 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8523;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58458511 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6907;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58458647 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58458653 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58458665 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58458680 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0071;AVGPOST=0.9996;RSQ=0.9773;ERATE=0.0003;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58458807 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7136;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58458812 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0227;AVGPOST=0.9985;RSQ=0.9811;ERATE=0.0003;THETA=0.0003;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 58458879 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58458887 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58459140 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5763;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58459179 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58459266 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7954;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58459267 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.820;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8681;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58459284 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0220;AVGPOST=0.9998;RSQ=0.9957;ERATE=0.0003;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 58459393 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7186;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58459410 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.7329;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58459434 rs5774383 GA G 30660 PASS INDEL;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2431;AVGPOST=0.9978;RSQ=0.9951;ERATE=0.0004;THETA=0.0003;AC=530;AN=2184 GT:DS:GL:BD 0.24267399 0 1 58459470 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0153;AVGPOST=0.9984;RSQ=0.9658;ERATE=0.0003;THETA=0.0002;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58459489 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58459539 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58459556 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9805;AVGPOST=0.9993;RSQ=0.9869;ERATE=0.0003;THETA=0.0005;AC=2142;AN=2184 GT:DS:GL:BD 0.98076922 1 1 58459688 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9673;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58459720 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.9744;AVGPOST=0.9991;RSQ=0.9889;ERATE=0.0004;THETA=0.0002;AC=2128;AN=2184 GT:DS:GL:BD 0.97435898 1 1 58459811 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58459906 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6599;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58460122 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0032;AVGPOST=0.9997;RSQ=0.9698;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58460123 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=0.9999;RSQ=0.9932;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58460161 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.751;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6216;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58460283 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0221;AVGPOST=0.9998;RSQ=0.9957;ERATE=0.0003;THETA=0.0003;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 58460323 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8239;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58460330 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1367;AVGPOST=0.9983;RSQ=0.9948;ERATE=0.0005;THETA=0.0004;AC=299;AN=2184 GT:DS:GL:BD 0.13690476 0 1 58460361 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0032;AVGPOST=0.9992;RSQ=0.9008;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58460381 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6161;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58460621 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.9771;AVGPOST=0.9989;RSQ=0.9848;ERATE=0.0004;THETA=0.0004;AC=2135;AN=2184 GT:DS:GL:BD 0.97756410 1 1 58460786 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9931;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58460797 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0836;AVGPOST=0.9990;RSQ=0.9958;ERATE=0.0003;THETA=0.0005;AC=182;AN=2184 GT:DS:GL:BD 0.08333334 0 1 58460851 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9868;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58460882 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0247;AVGPOST=0.9999;RSQ=0.9974;ERATE=0.0003;THETA=0.0002;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 58460942 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58460951 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6086;AVGPOST=0.9980;RSQ=0.9967;ERATE=0.0004;THETA=0.0005;AC=1329;AN=2184 GT:DS:GL:BD 0.60851645 1 1 58460979 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58461071 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6151;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58461097 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0247;AVGPOST=0.9997;RSQ=0.9949;ERATE=0.0003;THETA=0.0003;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 58461122 . C CA 202 PASS INDEL;BAVGPOST=0.999;BRSQ=0.669;LDAF=0.0023;AVGPOST=0.9976;RSQ=0.5571;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58461180 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0021;AVGPOST=0.9971;RSQ=0.4771;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58461251 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6131;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58461337 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9997;RSQ=0.9711;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58461415 . TG T 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.756;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4294;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58461488 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0053;AVGPOST=0.9980;RSQ=0.8305;ERATE=0.0006;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58461497 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.545;LDAF=0.0035;AVGPOST=0.9973;RSQ=0.6632;ERATE=0.0006;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58461539 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0214;AVGPOST=0.9991;RSQ=0.9876;ERATE=0.0003;THETA=0.0003;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 58461548 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7636;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58461631 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8260;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58461651 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0108;AVGPOST=0.9995;RSQ=0.9789;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58461656 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.737;LDAF=0.0009;AVGPOST=0.9988;RSQ=0.4587;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58461758 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.931;LDAF=0.0229;AVGPOST=0.9891;RSQ=0.8214;ERATE=0.0008;THETA=0.0003;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 58461759 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.979;LDAF=0.4410;AVGPOST=0.9827;RSQ=0.9734;ERATE=0.0025;THETA=0.0002;AC=960;AN=2184 GT:DS:GL:BD 0.43956044 0 1 58461799 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0017;AVGPOST=0.9977;RSQ=0.5078;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58461863 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.549;LDAF=0.0020;AVGPOST=0.9976;RSQ=0.4852;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58461867 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.721;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7320;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58461972 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0144;AVGPOST=0.9984;RSQ=0.9551;ERATE=0.0004;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58462039 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.798;LDAF=0.0033;AVGPOST=0.9979;RSQ=0.7721;ERATE=0.0006;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58462120 . TG T 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5157;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58462158 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9932;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58462171 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58462172 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58462228 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9409;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58462234 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.8119;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58462310 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0220;AVGPOST=0.9999;RSQ=0.9974;ERATE=0.0003;THETA=0.0003;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 58462367 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0087;AVGPOST=0.9990;RSQ=0.9601;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58462368 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6070;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58462510 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0247;AVGPOST=0.9999;RSQ=0.9974;ERATE=0.0003;THETA=0.0005;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 58462527 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.7408;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58462590 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0082;AVGPOST=0.9979;RSQ=0.9010;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58462639 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5306;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58462706 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5715;AVGPOST=0.9987;RSQ=0.9976;ERATE=0.0005;THETA=0.0003;AC=1247;AN=2184 GT:DS:GL:BD 0.57097071 1 1 58462762 . T TA 34 PASS INDEL;BAVGPOST=1.000;BRSQ=0.691;LDAF=0.0031;AVGPOST=0.9967;RSQ=0.6016;ERATE=0.0005;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58462816 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0105;AVGPOST=0.9991;RSQ=0.9634;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58462832 . C CCT 213 PASS INDEL;BAVGPOST=1.000;BRSQ=0.767;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6651;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58462885 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58462929 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.4656;AVGPOST=0.9982;RSQ=0.9971;ERATE=0.0003;THETA=0.0004;AC=1015;AN=2184 GT:DS:GL:BD 0.46474358 0 1 58463139 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58463210 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7408;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58463212 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4697;AVGPOST=0.9988;RSQ=0.9978;ERATE=0.0005;THETA=0.0003;AC=1025;AN=2184 GT:DS:GL:BD 0.46932235 0 1 58463398 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7143;AVGPOST=0.9968;RSQ=0.9947;ERATE=0.0005;THETA=0.0003;AC=1561;AN=2184 GT:DS:GL:BD 0.71474361 1 1 58463403 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.692;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5805;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58463420 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7148;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58463437 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58463454 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.3615;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 58463466 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6637;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58463540 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.1410;AVGPOST=0.9932;RSQ=0.9795;ERATE=0.0003;THETA=0.0006;AC=306;AN=2184 GT:DS:GL:BD 0.14010990 0 1 58463552 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.6048;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58463563 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0032;AVGPOST=0.9998;RSQ=0.9668;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58463617 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58463653 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0212;AVGPOST=0.9997;RSQ=0.9946;ERATE=0.0003;THETA=0.0005;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 58463679 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58463763 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5370;AVGPOST=0.9980;RSQ=0.9972;ERATE=0.0004;THETA=0.0003;AC=1172;AN=2184 GT:DS:GL:BD 0.53663003 1 1 58463771 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0071;AVGPOST=0.9995;RSQ=0.9679;ERATE=0.0003;THETA=0.0009;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58463881 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0075;AVGPOST=0.9996;RSQ=0.9796;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58463882 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0052;AVGPOST=0.9995;RSQ=0.9539;ERATE=0.0005;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58463974 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8178;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58464104 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0249;AVGPOST=0.9995;RSQ=0.9898;ERATE=0.0004;THETA=0.0003;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 58464180 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6231;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58464225 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0258;AVGPOST=0.9989;RSQ=0.9812;ERATE=0.0005;THETA=0.0005;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 58464251 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0108;AVGPOST=0.9985;RSQ=0.9356;ERATE=0.0003;THETA=0.0002;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58464264 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0043;AVGPOST=0.9964;RSQ=0.6551;ERATE=0.0005;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58464266 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0297;AVGPOST=0.9976;RSQ=0.9626;ERATE=0.0007;THETA=0.0002;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 58464369 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0225;AVGPOST=0.9988;RSQ=0.9807;ERATE=0.0003;THETA=0.0003;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 58464385 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.4535;AVGPOST=0.9978;RSQ=0.9962;ERATE=0.0005;THETA=0.0003;AC=989;AN=2184 GT:DS:GL:BD 0.45283884 0 1 58464386 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7182;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58464397 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58464466 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0030;AVGPOST=0.9993;RSQ=0.9113;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58464471 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0032;AVGPOST=0.9995;RSQ=0.9322;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58464623 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58464755 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0065;AVGPOST=0.9998;RSQ=0.9831;ERATE=0.0004;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58464773 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0017;AVGPOST=0.9986;RSQ=0.6841;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58464842 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.731;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8236;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58464851 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0038;AVGPOST=0.9984;RSQ=0.8428;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58464867 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7003;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58465075 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58465176 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0033;AVGPOST=0.9988;RSQ=0.8622;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58465211 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.6048;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58465466 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0169;AVGPOST=0.9991;RSQ=0.9767;ERATE=0.0005;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 58465499 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=1.0000;RSQ=0.9966;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58465574 . A AG 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58465576 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.669;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.7427;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58465712 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5421;AVGPOST=0.9963;RSQ=0.9939;ERATE=0.0006;THETA=0.0004;AC=1184;AN=2184 GT:DS:GL:BD 0.54212457 1 1 58465861 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.698;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8864;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58466016 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.5468;AVGPOST=0.9978;RSQ=0.9963;ERATE=0.0007;THETA=0.0037;AC=1192;AN=2184 GT:DS:GL:BD 0.54578757 1 1 58466052 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0078;AVGPOST=0.9995;RSQ=0.9758;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58466068 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0059;AVGPOST=0.9995;RSQ=0.9607;ERATE=0.0005;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58466187 rs5774386 A ACTT 65110 PASS INDEL;BAVGPOST=0.976;BRSQ=0.966;LDAF=0.5675;AVGPOST=0.9901;RSQ=0.9849;ERATE=0.0016;THETA=0.0004;AC=1243;AN=2184 GT:DS:GL:BD 0.56913918 1 1 58466188 rs33933638 C CTTA 26955 PASS INDEL;BAVGPOST=0.972;BRSQ=0.961;LDAF=0.5573;AVGPOST=0.9586;RSQ=0.9380;ERATE=0.0110;THETA=0.0004;AC=1223;AN=2184 GT:DS:GL:BD 0.55998170 1 1 58466273 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.601;LDAF=0.0014;AVGPOST=0.9986;RSQ=0.5389;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58466323 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0314;AVGPOST=0.9994;RSQ=0.9908;ERATE=0.0004;THETA=0.0023;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 58466445 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6565;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58466446 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.630;LDAF=0.0042;AVGPOST=0.9946;RSQ=0.5501;ERATE=0.0007;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58466704 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.6862;AVGPOST=0.9965;RSQ=0.9936;ERATE=0.0006;THETA=0.0005;AC=1500;AN=2184 GT:DS:GL:BD 0.68681318 1 1 58466745 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0312;AVGPOST=0.9995;RSQ=0.9932;ERATE=0.0003;THETA=0.0008;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 58466853 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0040;AVGPOST=0.9987;RSQ=0.8933;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58466933 . T TTTTG 144 PASS INDEL;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6327;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58467028 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.943;LDAF=0.0142;AVGPOST=0.9973;RSQ=0.9309;ERATE=0.0003;THETA=0.0048;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 58467043 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.4493;AVGPOST=0.9982;RSQ=0.9967;ERATE=0.0005;THETA=0.0006;AC=980;AN=2184 GT:DS:GL:BD 0.44871795 0 1 58467184 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0108;AVGPOST=0.9993;RSQ=0.9718;ERATE=0.0003;THETA=0.0002;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58467201 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9312;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58467357 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0105;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58467375 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.887;LDAF=0.0091;AVGPOST=0.9984;RSQ=0.9211;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58467565 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.910;LDAF=0.0058;AVGPOST=0.9990;RSQ=0.9269;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58467624 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7306;AVGPOST=0.9968;RSQ=0.9946;ERATE=0.0005;THETA=0.0004;AC=1596;AN=2184 GT:DS:GL:BD 0.73076922 1 1 58467649 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.6910;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58467733 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7425;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58467751 . GC G 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4962;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58467765 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0053;AVGPOST=0.9982;RSQ=0.8807;ERATE=0.0006;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58467792 . C CA 69 PASS INDEL;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5381;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58467837 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6785;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58467847 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0027;AVGPOST=0.9987;RSQ=0.8117;ERATE=0.0006;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58467884 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0250;AVGPOST=0.9995;RSQ=0.9901;ERATE=0.0003;THETA=0.0012;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 58467889 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2413;AVGPOST=0.9992;RSQ=0.9980;ERATE=0.0004;THETA=0.0008;AC=528;AN=2184 GT:DS:GL:BD 0.24175824 0 1 58467914 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58468072 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6941;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58468144 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.2420;AVGPOST=0.9935;RSQ=0.9846;ERATE=0.0018;THETA=0.0009;AC=527;AN=2184 GT:DS:GL:BD 0.24130036 0 1 58468281 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2410;AVGPOST=0.9994;RSQ=0.9985;ERATE=0.0004;THETA=0.0004;AC=527;AN=2184 GT:DS:GL:BD 0.24130036 0 1 58468289 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58468328 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2400;AVGPOST=0.9974;RSQ=0.9940;ERATE=0.0006;THETA=0.0065;AC=525;AN=2184 GT:DS:GL:BD 0.24038461 0 1 58468352 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.913;BRSQ=0.817;LDAF=0.6025;AVGPOST=0.8804;RSQ=0.7937;ERATE=0.0683;THETA=0.0014;AC=1345;AN=2184 GT:DS:GL:BD 0.61584246 1 1 58468364 . CAG C 74 PASS INDEL;BAVGPOST=0.990;BRSQ=0.648;LDAF=0.0259;AVGPOST=0.9708;RSQ=0.5571;ERATE=0.0067;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 58468726 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58468770 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0034;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58468855 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0249;AVGPOST=0.9995;RSQ=0.9924;ERATE=0.0003;THETA=0.0002;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 58468883 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0053;AVGPOST=0.9976;RSQ=0.8103;ERATE=0.0006;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58468946 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58468952 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0040;AVGPOST=0.9975;RSQ=0.7261;ERATE=0.0015;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58468980 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0306;AVGPOST=0.9990;RSQ=0.9882;ERATE=0.0003;THETA=0.0004;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 58469065 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58469068 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6208;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58469263 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7610;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58469333 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0025;AVGPOST=0.9990;RSQ=0.8456;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58469491 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58469501 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0004;AVGPOST=0.9995;RSQ=0.5372;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58469522 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.754;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5447;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58469575 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9990;RSQ=0.9081;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58469610 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6426;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58469685 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8648;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58469963 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.732;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58469968 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.7782;ERATE=0.0003;THETA=0.0044;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58470077 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8456;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58470367 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0040;AVGPOST=0.9995;RSQ=0.9507;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58470423 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58470434 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.987;LDAF=0.7304;AVGPOST=0.9935;RSQ=0.9891;ERATE=0.0009;THETA=0.0003;AC=1597;AN=2184 GT:DS:GL:BD 0.73122710 1 1 58470435 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.965;LDAF=0.1696;AVGPOST=0.9949;RSQ=0.9857;ERATE=0.0004;THETA=0.0004;AC=372;AN=2184 GT:DS:GL:BD 0.17032968 0 1 58470516 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7136;AVGPOST=0.9984;RSQ=0.9971;ERATE=0.0004;THETA=0.0004;AC=1558;AN=2184 GT:DS:GL:BD 0.71336997 1 1 58470525 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4448;AVGPOST=0.9988;RSQ=0.9978;ERATE=0.0005;THETA=0.0005;AC=970;AN=2184 GT:DS:GL:BD 0.44413918 0 1 58470734 . G GAAAA 23530 PASS INDEL;BAVGPOST=0.988;BRSQ=0.958;LDAF=0.1545;AVGPOST=0.9932;RSQ=0.9792;ERATE=0.0007;THETA=0.0002;AC=337;AN=2184 GT:DS:GL:BD 0.15430403 0 1 58470735 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.536;LDAF=0.0019;AVGPOST=0.9966;RSQ=0.3289;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58470782 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0088;AVGPOST=0.9989;RSQ=0.9502;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58470799 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7588;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58470807 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58470823 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58470859 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0036;AVGPOST=0.9989;RSQ=0.8661;ERATE=0.0004;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58470987 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58471091 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7098;AVGPOST=0.9988;RSQ=0.9977;ERATE=0.0004;THETA=0.0002;AC=1551;AN=2184 GT:DS:GL:BD 0.71016484 1 1 58471237 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0041;AVGPOST=0.9991;RSQ=0.9156;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58471267 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.596;LDAF=0.0013;AVGPOST=0.9980;RSQ=0.4063;ERATE=0.0006;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58471273 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0131;AVGPOST=0.9962;RSQ=0.8795;ERATE=0.0006;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58471404 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0154;AVGPOST=0.9983;RSQ=0.9593;ERATE=0.0003;THETA=0.0005;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58471441 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58471496 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.799;LDAF=0.0028;AVGPOST=0.9980;RSQ=0.7216;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58471685 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58471689 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8286;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58471709 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4428;AVGPOST=0.9990;RSQ=0.9982;ERATE=0.0005;THETA=0.0007;AC=966;AN=2184 GT:DS:GL:BD 0.44230768 0 1 58471788 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7376;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58471866 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58471884 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58471890 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=0.9987;RSQ=0.9038;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58471899 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58472028 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58472034 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58472063 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0030;AVGPOST=0.9993;RSQ=0.9373;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58472067 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7137;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58472110 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6615;ERATE=0.0006;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58472186 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6609;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58472265 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0078;AVGPOST=0.9995;RSQ=0.9727;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58472273 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9463;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58472376 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7530;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58472433 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8264;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58472445 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58472458 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.9189;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58472529 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58472546 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4442;AVGPOST=0.9987;RSQ=0.9977;ERATE=0.0006;THETA=0.0002;AC=969;AN=2184 GT:DS:GL:BD 0.44368133 0 1 58472579 . A AG 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0052;AVGPOST=0.9953;RSQ=0.6778;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58472624 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0305;AVGPOST=0.9997;RSQ=0.9964;ERATE=0.0003;THETA=0.0003;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 58472665 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2445;AVGPOST=0.9993;RSQ=0.9983;ERATE=0.0004;THETA=0.0004;AC=535;AN=2184 GT:DS:GL:BD 0.24496336 0 1 58472763 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.957;LDAF=0.0296;AVGPOST=0.9968;RSQ=0.9615;ERATE=0.0003;THETA=0.0002;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 58472786 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4948;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58473015 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.933;LDAF=0.0979;AVGPOST=0.9888;RSQ=0.9559;ERATE=0.0005;THETA=0.0002;AC=212;AN=2184 GT:DS:GL:BD 0.09706960 0 1 58473028 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0039;AVGPOST=0.9988;RSQ=0.8881;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58473211 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58473268 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8241;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58473296 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0086;AVGPOST=0.9983;RSQ=0.9297;ERATE=0.0004;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58473370 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7533;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58473427 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7559;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58473445 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.7092;AVGPOST=0.9973;RSQ=0.9956;ERATE=0.0005;THETA=0.0003;AC=1549;AN=2184 GT:DS:GL:BD 0.70924908 1 1 58473448 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1646;AVGPOST=0.9971;RSQ=0.9918;ERATE=0.0004;THETA=0.0005;AC=358;AN=2184 GT:DS:GL:BD 0.16391942 0 1 58473645 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.975;LDAF=0.0327;AVGPOST=0.9972;RSQ=0.9722;ERATE=0.0003;THETA=0.0005;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 58473691 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8677;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58473726 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.6259;ERATE=0.0007;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58473738 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.9224;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58473741 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8916;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58473922 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0027;AVGPOST=0.9998;RSQ=0.9769;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58473987 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0023;AVGPOST=0.9982;RSQ=0.6758;ERATE=0.0004;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58473998 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9829;ERATE=0.0003;THETA=0.0001;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58474007 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2441;AVGPOST=0.9995;RSQ=0.9987;ERATE=0.0003;THETA=0.0009;AC=534;AN=2184 GT:DS:GL:BD 0.24450549 0 1 58474151 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58474206 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0049;AVGPOST=0.9990;RSQ=0.9196;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58474280 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.4669;AVGPOST=0.9956;RSQ=0.9931;ERATE=0.0017;THETA=0.0003;AC=1019;AN=2184 GT:DS:GL:BD 0.46657509 0 1 58474422 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0057;AVGPOST=0.9979;RSQ=0.8817;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58474538 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9273;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58474638 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.964;LDAF=0.0727;AVGPOST=0.9942;RSQ=0.9686;ERATE=0.0003;THETA=0.0003;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 58474787 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0243;AVGPOST=0.9998;RSQ=0.9957;ERATE=0.0003;THETA=0.0004;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 58474987 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1867;AVGPOST=0.9994;RSQ=0.9982;ERATE=0.0004;THETA=0.0010;AC=408;AN=2184 GT:DS:GL:BD 0.18681319 0 1 58475007 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7520;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58475129 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9832;ERATE=0.0004;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58475172 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0034;AVGPOST=0.9997;RSQ=0.9642;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58475183 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0054;AVGPOST=0.9979;RSQ=0.8530;ERATE=0.0004;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58475239 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9931;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58475327 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0084;AVGPOST=0.9997;RSQ=0.9834;ERATE=0.0004;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58475526 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7122;AVGPOST=0.9976;RSQ=0.9962;ERATE=0.0004;THETA=0.0003;AC=1554;AN=2184 GT:DS:GL:BD 0.71153843 1 1 58475622 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58475752 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58475842 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5975;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58476008 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58476022 . GAT G 59 PASS INDEL;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4827;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58476048 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7863;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58476115 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0035;AVGPOST=0.9988;RSQ=0.8562;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58476205 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0042;AVGPOST=0.9996;RSQ=0.9556;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58476261 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58476417 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0032;AVGPOST=0.9998;RSQ=0.9790;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58476436 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7952;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58476734 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0051;AVGPOST=0.9953;RSQ=0.6410;ERATE=0.0017;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58476754 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0411;AVGPOST=0.9996;RSQ=0.9952;ERATE=0.0003;THETA=0.0005;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 58476781 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7349;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58476784 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58476908 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0082;AVGPOST=0.9996;RSQ=0.9808;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58477012 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4431;AVGPOST=0.9977;RSQ=0.9962;ERATE=0.0006;THETA=0.0005;AC=966;AN=2184 GT:DS:GL:BD 0.44230768 0 1 58477150 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.6872;AVGPOST=0.9969;RSQ=0.9950;ERATE=0.0005;THETA=0.0003;AC=1500;AN=2184 GT:DS:GL:BD 0.68681318 1 1 58477334 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.660;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5963;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58477382 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4638;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58477422 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0035;AVGPOST=0.9990;RSQ=0.8953;ERATE=0.0005;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58477456 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0043;AVGPOST=0.9987;RSQ=0.8674;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58477457 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.8355;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58477614 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.668;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.4195;ERATE=0.0005;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58477615 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.848;LDAF=0.0039;AVGPOST=0.9985;RSQ=0.8199;ERATE=0.0005;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58477799 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6873;AVGPOST=0.9967;RSQ=0.9947;ERATE=0.0005;THETA=0.0012;AC=1502;AN=2184 GT:DS:GL:BD 0.68772894 1 1 58477966 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58477988 . T TCAGGAGG 329 PASS INDEL;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4990;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58478043 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0093;AVGPOST=0.9995;RSQ=0.9740;ERATE=0.0004;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58478076 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0050;AVGPOST=0.9989;RSQ=0.9095;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58478124 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0104;AVGPOST=0.9985;RSQ=0.9346;ERATE=0.0004;THETA=0.0002;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58478127 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.975;LDAF=0.6664;AVGPOST=0.9640;RSQ=0.9467;ERATE=0.0096;THETA=0.0003;AC=1472;AN=2184 GT:DS:GL:BD 0.67399269 1 1 58478275 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.878;LDAF=0.0055;AVGPOST=0.9982;RSQ=0.8818;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58478325 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7224;AVGPOST=0.9976;RSQ=0.9958;ERATE=0.0005;THETA=0.0004;AC=1578;AN=2184 GT:DS:GL:BD 0.72252744 1 1 58478362 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2455;AVGPOST=0.9983;RSQ=0.9966;ERATE=0.0004;THETA=0.0003;AC=537;AN=2184 GT:DS:GL:BD 0.24587911 0 1 58478395 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2447;AVGPOST=0.9987;RSQ=0.9974;ERATE=0.0004;THETA=0.0009;AC=535;AN=2184 GT:DS:GL:BD 0.24496336 0 1 58478516 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2453;AVGPOST=0.9987;RSQ=0.9973;ERATE=0.0004;THETA=0.0002;AC=536;AN=2184 GT:DS:GL:BD 0.24542125 0 1 58478543 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0247;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 58478552 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58478569 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9009;ERATE=0.0003;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58478758 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58478795 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6674;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58478809 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.8029;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58479117 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.860;LDAF=0.0053;AVGPOST=0.9987;RSQ=0.9057;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58479135 . CA C 5740 PASS INDEL;BAVGPOST=0.984;BRSQ=0.901;LDAF=0.0611;AVGPOST=0.9834;RSQ=0.8996;ERATE=0.0004;THETA=0.0005;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 58479137 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7010;AVGPOST=0.9962;RSQ=0.9944;ERATE=0.0004;THETA=0.0002;AC=1532;AN=2184 GT:DS:GL:BD 0.70146519 1 1 58479196 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0013;AVGPOST=0.9981;RSQ=0.4655;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58479214 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7064;ERATE=0.0004;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58479329 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8726;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58479360 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.8055;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58479557 . CT C 48 PASS INDEL;BAVGPOST=0.998;BRSQ=0.568;LDAF=0.0023;AVGPOST=0.9972;RSQ=0.5949;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58479625 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0019;AVGPOST=0.9993;RSQ=0.8494;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58479638 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0035;AVGPOST=0.9992;RSQ=0.9205;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58479865 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9883;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58479899 . TG T 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.3712;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58480024 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58480040 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7627;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58480055 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7113;AVGPOST=0.9991;RSQ=0.9982;ERATE=0.0004;THETA=0.0003;AC=1553;AN=2184 GT:DS:GL:BD 0.71108061 1 1 58480259 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0023;AVGPOST=0.9995;RSQ=0.9122;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58480299 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.609;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5396;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58480321 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58480469 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58480501 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58480618 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58480654 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6888;AVGPOST=0.9996;RSQ=0.9993;ERATE=0.0003;THETA=0.0004;AC=1504;AN=2184 GT:DS:GL:BD 0.68864471 1 1 58480826 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0188;AVGPOST=0.9995;RSQ=0.9877;ERATE=0.0004;THETA=0.0003;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 58480893 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9295;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58480921 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1409;AVGPOST=0.9988;RSQ=0.9956;ERATE=0.0003;THETA=0.0004;AC=308;AN=2184 GT:DS:GL:BD 0.14102565 0 1 58480938 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0083;AVGPOST=0.9999;RSQ=0.9920;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58480954 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58480975 . AC A 151 PASS INDEL;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7776;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58481025 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58481036 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58481042 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0252;AVGPOST=0.9999;RSQ=0.9975;ERATE=0.0003;THETA=0.0003;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 58481058 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0302;AVGPOST=0.9990;RSQ=0.9865;ERATE=0.0003;THETA=0.0004;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 58481068 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0083;AVGPOST=0.9999;RSQ=0.9952;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58481271 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.951;LDAF=0.0245;AVGPOST=0.9994;RSQ=0.9920;ERATE=0.0003;THETA=0.0004;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 58481272 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.988;LDAF=0.2385;AVGPOST=0.9983;RSQ=0.9958;ERATE=0.0007;THETA=0.0002;AC=521;AN=2184 GT:DS:GL:BD 0.23855311 0 1 58481678 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.976;LDAF=0.4940;AVGPOST=0.9819;RSQ=0.9738;ERATE=0.0039;THETA=0.0003;AC=1076;AN=2184 GT:DS:GL:BD 0.49267399 0 1 58481680 . G GC 279 PASS INDEL;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0039;AVGPOST=0.9981;RSQ=0.8120;ERATE=0.0005;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58481683 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0415;AVGPOST=0.9993;RSQ=0.9914;ERATE=0.0003;THETA=0.0002;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 58481746 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9670;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58481747 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58481760 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6696;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58481833 . A AT 45 PASS INDEL;BAVGPOST=0.993;BRSQ=0.568;LDAF=0.0138;AVGPOST=0.9807;RSQ=0.4833;ERATE=0.0038;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58481859 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4667;AVGPOST=0.9979;RSQ=0.9966;ERATE=0.0005;THETA=0.0004;AC=1019;AN=2184 GT:DS:GL:BD 0.46657509 0 1 58481874 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58482028 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8748;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58482029 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2203;AVGPOST=0.9995;RSQ=0.9988;ERATE=0.0003;THETA=0.0003;AC=482;AN=2184 GT:DS:GL:BD 0.22069597 0 1 58482070 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58482082 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0003;AVGPOST=0.9994;RSQ=0.3084;ERATE=0.0004;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 58482083 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8390;ERATE=0.0005;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58482104 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.776;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.8424;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58482203 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4663;AVGPOST=0.9984;RSQ=0.9971;ERATE=0.0005;THETA=0.0016;AC=1017;AN=2184 GT:DS:GL:BD 0.46565935 0 1 58482316 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.7109;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0003;THETA=0.0004;AC=1553;AN=2184 GT:DS:GL:BD 0.71108061 1 1 58482341 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4654;AVGPOST=0.9973;RSQ=0.9961;ERATE=0.0004;THETA=0.0003;AC=1014;AN=2184 GT:DS:GL:BD 0.46428570 0 1 58482434 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0083;AVGPOST=0.9994;RSQ=0.9667;ERATE=0.0003;THETA=0.0045;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58482470 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58482548 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.852;LDAF=0.0051;AVGPOST=0.9993;RSQ=0.9513;ERATE=0.0003;THETA=0.0015;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58482608 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8141;ERATE=0.0004;THETA=0.0033;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58482612 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58482652 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9073;ERATE=0.0003;THETA=0.0055;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58482708 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1440;AVGPOST=0.9984;RSQ=0.9949;ERATE=0.0003;THETA=0.0004;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 58482943 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0247;AVGPOST=0.9999;RSQ=0.9983;ERATE=0.0003;THETA=0.0070;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 58482969 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6772;ERATE=0.0003;THETA=0.0096;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58482980 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6583;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58483028 . AG A 1564 PASS INDEL;BAVGPOST=0.997;BRSQ=0.943;LDAF=0.0177;AVGPOST=0.9974;RSQ=0.9449;ERATE=0.0006;THETA=0.0101;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 58483054 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.6464;AVGPOST=0.9961;RSQ=0.9945;ERATE=0.0005;THETA=0.0026;AC=1413;AN=2184 GT:DS:GL:BD 0.64697802 1 1 58483120 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.992;LDAF=0.4638;AVGPOST=0.9921;RSQ=0.9893;ERATE=0.0008;THETA=0.0006;AC=1013;AN=2184 GT:DS:GL:BD 0.46382785 0 1 58483220 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.3878;AVGPOST=0.9951;RSQ=0.9926;ERATE=0.0007;THETA=0.0047;AC=848;AN=2184 GT:DS:GL:BD 0.38827839 0 1 58483286 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0004;THETA=0.0053;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58483510 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.716;LDAF=0.0030;AVGPOST=0.9974;RSQ=0.6471;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58483594 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0097;AVGPOST=0.9989;RSQ=0.9558;ERATE=0.0003;THETA=0.0016;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58483688 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8282;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58483732 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0034;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58483777 . T TA 1616 PASS INDEL;BAVGPOST=0.971;BRSQ=0.787;LDAF=0.0816;AVGPOST=0.9599;RSQ=0.7978;ERATE=0.0124;THETA=0.0006;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 58483819 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6519;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58483820 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58483864 . TCCCTGTCTGTA T 728 PASS INDEL;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5951;ERATE=0.0005;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58483902 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0041;AVGPOST=0.9994;RSQ=0.9405;ERATE=0.0009;THETA=0.0034;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58483923 . AC A 42 PASS INDEL;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58483949 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58484116 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.6390;AVGPOST=0.9968;RSQ=0.9952;ERATE=0.0011;THETA=0.0002;AC=1395;AN=2184 GT:DS:GL:BD 0.63873625 1 1 58484143 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9319;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58484200 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0087;AVGPOST=0.9970;RSQ=0.8770;ERATE=0.0004;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58484217 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7130;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58484277 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.1341;AVGPOST=0.9976;RSQ=0.9920;ERATE=0.0004;THETA=0.0005;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 58484307 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9809;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58484314 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0007;AVGPOST=0.9992;RSQ=0.4912;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58484350 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.976;LDAF=0.0967;AVGPOST=0.9980;RSQ=0.9915;ERATE=0.0004;THETA=0.0004;AC=212;AN=2184 GT:DS:GL:BD 0.09706960 0 1 58484357 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0039;AVGPOST=0.9979;RSQ=0.7881;ERATE=0.0006;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58484464 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1277;AVGPOST=0.9993;RSQ=0.9972;ERATE=0.0004;THETA=0.0004;AC=279;AN=2184 GT:DS:GL:BD 0.12774725 0 1 58484567 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5295;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58484598 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.738;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.8151;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58484650 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58484677 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6551;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58484716 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8757;ERATE=0.0007;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58484754 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6436;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58484807 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0056;AVGPOST=0.9980;RSQ=0.8577;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58484869 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4822;AVGPOST=0.9975;RSQ=0.9961;ERATE=0.0007;THETA=0.0003;AC=1052;AN=2184 GT:DS:GL:BD 0.48168498 0 1 58485030 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.5499;ERATE=0.0004;THETA=0.0023;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58485179 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0029;AVGPOST=0.9987;RSQ=0.8192;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58485196 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4611;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58485221 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0057;AVGPOST=0.9996;RSQ=0.9660;ERATE=0.0004;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58485265 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.934;LDAF=0.0104;AVGPOST=0.9985;RSQ=0.9496;ERATE=0.0004;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58485356 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5817;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58485443 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.6111;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0003;THETA=0.0002;AC=1334;AN=2184 GT:DS:GL:BD 0.61080587 1 1 58485447 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.984;LDAF=0.1201;AVGPOST=0.9985;RSQ=0.9943;ERATE=0.0004;THETA=0.0002;AC=263;AN=2184 GT:DS:GL:BD 0.12042125 0 1 58485467 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.786;LDAF=0.0027;AVGPOST=0.9980;RSQ=0.7196;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58485764 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6319;AVGPOST=0.9985;RSQ=0.9975;ERATE=0.0005;THETA=0.0002;AC=1379;AN=2184 GT:DS:GL:BD 0.63141024 1 1 58486114 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6844;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58486223 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0261;AVGPOST=1.0000;RSQ=0.9992;ERATE=0.0003;THETA=0.0008;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 58486280 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0025;AVGPOST=0.9990;RSQ=0.8392;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58486285 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0007;AVGPOST=0.9992;RSQ=0.4665;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58486312 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.754;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7769;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58486376 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58486402 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0111;AVGPOST=0.9983;RSQ=0.9367;ERATE=0.0004;THETA=0.0002;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58486492 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.656;LDAF=0.0042;AVGPOST=0.9978;RSQ=0.7776;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58486572 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.739;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5817;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58486630 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.6315;AVGPOST=0.9938;RSQ=0.9911;ERATE=0.0009;THETA=0.0003;AC=1381;AN=2184 GT:DS:GL:BD 0.63232601 1 1 58486685 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0193;AVGPOST=0.9963;RSQ=0.9232;ERATE=0.0004;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 58486815 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0035;AVGPOST=0.9971;RSQ=0.7055;ERATE=0.0004;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58486832 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6316;AVGPOST=0.9986;RSQ=0.9976;ERATE=0.0004;THETA=0.0005;AC=1380;AN=2184 GT:DS:GL:BD 0.63186812 1 1 58486980 . T TC 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6908;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58487139 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0024;AVGPOST=0.9961;RSQ=0.4758;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58487254 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6730;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58487273 . GA G 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5594;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58487312 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0114;AVGPOST=0.9990;RSQ=0.9682;ERATE=0.0003;THETA=0.0010;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58487331 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58487401 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58487462 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58487471 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0040;AVGPOST=0.9995;RSQ=0.9507;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58487615 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58487707 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0218;AVGPOST=0.9965;RSQ=0.9427;ERATE=0.0004;THETA=0.0002;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 58487724 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0261;AVGPOST=0.9996;RSQ=0.9937;ERATE=0.0004;THETA=0.0003;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 58487788 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0086;AVGPOST=0.9991;RSQ=0.9715;ERATE=0.0003;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58487844 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2294;AVGPOST=0.9974;RSQ=0.9945;ERATE=0.0003;THETA=0.0003;AC=501;AN=2184 GT:DS:GL:BD 0.22939560 0 1 58487848 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6380;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58487888 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58487894 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.4603;AVGPOST=0.9979;RSQ=0.9969;ERATE=0.0003;THETA=0.0005;AC=1004;AN=2184 GT:DS:GL:BD 0.45970696 0 1 58488009 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58488117 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0025;AVGPOST=0.9980;RSQ=0.6957;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58488148 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0072;AVGPOST=0.9994;RSQ=0.9664;ERATE=0.0003;THETA=0.0012;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58488185 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9167;ERATE=0.0003;THETA=0.0074;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58488364 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0262;AVGPOST=0.9997;RSQ=0.9961;ERATE=0.0003;THETA=0.0006;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 58488431 . AATTTC A 6080 PASS INDEL;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0264;AVGPOST=0.9993;RSQ=0.9886;ERATE=0.0003;THETA=0.0004;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 58488485 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58488531 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0054;AVGPOST=0.9985;RSQ=0.8859;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58488601 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.6076;AVGPOST=0.9933;RSQ=0.9905;ERATE=0.0005;THETA=0.0056;AC=1329;AN=2184 GT:DS:GL:BD 0.60851645 1 1 58488614 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9643;ERATE=0.0003;THETA=0.0050;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58488683 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0053;AVGPOST=0.9994;RSQ=0.9473;ERATE=0.0003;THETA=0.0022;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58488751 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.4686;AVGPOST=0.9916;RSQ=0.9895;ERATE=0.0006;THETA=0.0032;AC=1024;AN=2184 GT:DS:GL:BD 0.46886447 0 1 58488824 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.988;LDAF=0.4602;AVGPOST=0.9910;RSQ=0.9878;ERATE=0.0008;THETA=0.0157;AC=1003;AN=2184 GT:DS:GL:BD 0.45924908 0 1 58488859 . AT A 374 PASS INDEL;BAVGPOST=0.874;BRSQ=0.427;LDAF=0.0922;AVGPOST=0.9042;RSQ=0.6040;ERATE=0.0011;THETA=0.0041;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 58488877 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.963;LDAF=0.0129;AVGPOST=0.9990;RSQ=0.9754;ERATE=0.0003;THETA=0.0136;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 58488906 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58488938 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.972;LDAF=0.8760;AVGPOST=0.9901;RSQ=0.9715;ERATE=0.0004;THETA=0.0245;AC=1914;AN=2184 GT:DS:GL:BD 0.87637365 1 1 58488950 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0359;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58489143 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6430;ERATE=0.0003;THETA=0.0092;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58489148 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0144;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58489176 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0127;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58489207 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8019;ERATE=0.0004;THETA=0.0093;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58489260 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.934;LDAF=0.0272;AVGPOST=0.9961;RSQ=0.9477;ERATE=0.0007;THETA=0.0150;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 58489315 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0035;AVGPOST=0.9993;RSQ=0.9176;ERATE=0.0003;THETA=0.0218;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58489365 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.8156;ERATE=0.0004;THETA=0.0064;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58489443 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.959;BRSQ=0.909;LDAF=0.2375;AVGPOST=0.9533;RSQ=0.9062;ERATE=0.0198;THETA=0.0286;AC=503;AN=2184 GT:DS:GL:BD 0.23031135 0 1 58489598 rs5774390 GC G 352 PASS INDEL;BAVGPOST=0.959;BRSQ=0.582;LDAF=0.0447;AVGPOST=0.9644;RSQ=0.6846;ERATE=0.0027;THETA=0.0156;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 58489677 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.9128;ERATE=0.0003;THETA=0.0066;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58489691 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6941;ERATE=0.0003;THETA=0.0177;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58489770 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.957;LDAF=0.0491;AVGPOST=0.9962;RSQ=0.9700;ERATE=0.0005;THETA=0.0176;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 58489840 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0108;AVGPOST=0.9980;RSQ=0.9360;ERATE=0.0004;THETA=0.0049;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58489969 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8141;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58489975 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5045;ERATE=0.0004;THETA=0.0113;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58490169 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7543;ERATE=0.0008;THETA=0.0075;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58490278 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0080;AVGPOST=0.9985;RSQ=0.9329;ERATE=0.0003;THETA=0.0176;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58490301 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.810;LDAF=0.0035;AVGPOST=0.9976;RSQ=0.7561;ERATE=0.0003;THETA=0.0125;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58490306 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.6248;ERATE=0.0004;THETA=0.0121;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58490332 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0051;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58490405 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0173;AVGPOST=0.9998;RSQ=0.9954;ERATE=0.0003;THETA=0.0088;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 58490426 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.915;LDAF=0.0083;AVGPOST=0.9995;RSQ=0.9778;ERATE=0.0003;THETA=0.0023;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58490734 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0078;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58490760 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0103;AVGPOST=0.9995;RSQ=0.9787;ERATE=0.0003;THETA=0.0067;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58490838 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7089;ERATE=0.0004;THETA=0.0127;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58490909 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0041;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58491220 . TTATA T 764 PASS INDEL;BAVGPOST=0.997;BRSQ=0.899;LDAF=0.0157;AVGPOST=0.9968;RSQ=0.9148;ERATE=0.0008;THETA=0.0152;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58491231 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.853;BRSQ=0.712;LDAF=0.2692;AVGPOST=0.8428;RSQ=0.7301;ERATE=0.0071;THETA=0.0063;AC=523;AN=2184 GT:DS:GL:BD 0.23946886 0 1 58491231 . TAG T 3884 PASS INDEL;BAVGPOST=0.943;BRSQ=0.185;LDAF=0.9184;AVGPOST=0.8853;RSQ=0.3685;ERATE=0.0070;THETA=0.0047;AC=2085;AN=2184 GT:DS:GL:BD 0.95467031 1 1 58491233 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.937;BRSQ=0.870;LDAF=0.2325;AVGPOST=0.8947;RSQ=0.7938;ERATE=0.0039;THETA=0.0027;AC=491;AN=2184 GT:DS:GL:BD 0.22481684 0 1 58491366 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.559;LDAF=0.0040;AVGPOST=0.9969;RSQ=0.6500;ERATE=0.0007;THETA=0.0146;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58491416 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5570;ERATE=0.0005;THETA=0.0117;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58491458 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0249;AVGPOST=0.9961;RSQ=0.9430;ERATE=0.0005;THETA=0.0016;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 58491674 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.711;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.6351;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58491696 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0052;AVGPOST=0.9989;RSQ=0.9101;ERATE=0.0004;THETA=0.0067;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58491704 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0147;AVGPOST=0.9994;RSQ=0.9834;ERATE=0.0004;THETA=0.0047;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58491783 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9289;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58491807 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3724;AVGPOST=0.9959;RSQ=0.9932;ERATE=0.0004;THETA=0.0009;AC=812;AN=2184 GT:DS:GL:BD 0.37179488 0 1 58491843 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.727;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5782;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58491970 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58492006 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4412;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58492017 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9033;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58492075 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0238;AVGPOST=0.9997;RSQ=0.9948;ERATE=0.0003;THETA=0.0005;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 58492098 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58492109 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58492264 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58492384 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58492435 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3494;AVGPOST=0.9964;RSQ=0.9939;ERATE=0.0008;THETA=0.0012;AC=762;AN=2184 GT:DS:GL:BD 0.34890109 0 1 58492540 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0025;AVGPOST=0.9966;RSQ=0.4762;ERATE=0.0007;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58492781 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5567;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58492884 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5624;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58492944 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0092;AVGPOST=0.9989;RSQ=0.9531;ERATE=0.0004;THETA=0.0009;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58492976 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4888;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58493039 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.968;LDAF=0.0241;AVGPOST=0.9989;RSQ=0.9834;ERATE=0.0005;THETA=0.0003;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 58493059 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0106;AVGPOST=0.9990;RSQ=0.9610;ERATE=0.0003;THETA=0.0016;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58493105 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8199;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58493242 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8819;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58493335 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.767;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6294;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58493339 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0146;AVGPOST=0.9994;RSQ=0.9843;ERATE=0.0004;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58493560 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.721;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58493671 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3492;AVGPOST=0.9974;RSQ=0.9952;ERATE=0.0009;THETA=0.0008;AC=761;AN=2184 GT:DS:GL:BD 0.34844321 0 1 58493779 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6469;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58493783 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.638;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8144;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58493836 . C CTA 1335 PASS INDEL;BAVGPOST=0.993;BRSQ=0.851;LDAF=0.0274;AVGPOST=0.9957;RSQ=0.9372;ERATE=0.0008;THETA=0.0004;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 58493837 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3486;AVGPOST=0.9988;RSQ=0.9978;ERATE=0.0004;THETA=0.0003;AC=760;AN=2184 GT:DS:GL:BD 0.34798536 0 1 58493872 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9108;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58493906 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0060;AVGPOST=0.9994;RSQ=0.9605;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58493944 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.976;LDAF=0.0229;AVGPOST=0.9971;RSQ=0.9450;ERATE=0.0003;THETA=0.0004;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 58493953 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6599;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58493980 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58493981 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58493995 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6489;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58494002 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9359;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58494020 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3484;AVGPOST=0.9989;RSQ=0.9978;ERATE=0.0005;THETA=0.0007;AC=760;AN=2184 GT:DS:GL:BD 0.34798536 0 1 58494100 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58494184 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58494269 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7153;ERATE=0.0003;THETA=0.0019;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58494367 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0085;AVGPOST=0.9994;RSQ=0.9733;ERATE=0.0003;THETA=0.0011;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58494482 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0261;AVGPOST=0.9999;RSQ=0.9979;ERATE=0.0003;THETA=0.0010;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 58494491 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0158;AVGPOST=0.9977;RSQ=0.9377;ERATE=0.0003;THETA=0.0007;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58494517 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7141;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58494640 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58494855 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8394;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58494859 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9524;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58495013 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58495035 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0128;AVGPOST=0.9988;RSQ=0.9684;ERATE=0.0003;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58495040 . T TC 7 PASS INDEL;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6939;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58495060 rs71246206 C CA 952 PASS INDEL;BAVGPOST=0.998;BRSQ=0.874;LDAF=0.0086;AVGPOST=0.9966;RSQ=0.8401;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58495151 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3483;AVGPOST=0.9963;RSQ=0.9935;ERATE=0.0008;THETA=0.0006;AC=758;AN=2184 GT:DS:GL:BD 0.34706959 0 1 58495154 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0081;AVGPOST=0.9993;RSQ=0.9626;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58495244 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0285;AVGPOST=0.9997;RSQ=0.9943;ERATE=0.0003;THETA=0.0006;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 58495370 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58495392 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.7035;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58495515 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0084;AVGPOST=0.9985;RSQ=0.9244;ERATE=0.0004;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58495560 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.641;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7380;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58495570 . AAC A 51 PASS INDEL;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0005;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58495596 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5830;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58495617 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3989;AVGPOST=0.9959;RSQ=0.9935;ERATE=0.0005;THETA=0.0004;AC=870;AN=2184 GT:DS:GL:BD 0.39835164 0 1 58495676 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0053;AVGPOST=0.9960;RSQ=0.7183;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58495730 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.689;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.3479;ERATE=0.0006;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58495772 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0028;AVGPOST=0.9979;RSQ=0.6686;ERATE=0.0005;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58496049 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58496072 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58496184 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0262;AVGPOST=0.9998;RSQ=0.9965;ERATE=0.0004;THETA=0.0005;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 58496331 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0077;AVGPOST=0.9980;RSQ=0.8987;ERATE=0.0004;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58496373 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0292;AVGPOST=0.9995;RSQ=0.9929;ERATE=0.0003;THETA=0.0006;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 58496528 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3461;AVGPOST=0.9988;RSQ=0.9980;ERATE=0.0004;THETA=0.0006;AC=755;AN=2184 GT:DS:GL:BD 0.34569597 0 1 58496547 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7839;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58496647 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58496672 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5836;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58496730 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3447;AVGPOST=0.9984;RSQ=0.9973;ERATE=0.0004;THETA=0.0005;AC=752;AN=2184 GT:DS:GL:BD 0.34432235 0 1 58496858 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6677;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58496952 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.7090;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58496960 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58496974 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8844;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58496981 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8863;ERATE=0.0003;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58497004 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0015;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58497019 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0110;AVGPOST=0.9992;RSQ=0.9703;ERATE=0.0005;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58497093 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58497135 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58497349 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0243;AVGPOST=0.9994;RSQ=0.9892;ERATE=0.0003;THETA=0.0004;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 58497396 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7822;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58497474 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0052;AVGPOST=0.9985;RSQ=0.8918;ERATE=0.0004;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58497526 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9673;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58497703 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.915;LDAF=0.0231;AVGPOST=0.9989;RSQ=0.9838;ERATE=0.0004;THETA=0.0005;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 58497813 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.679;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58497825 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0149;AVGPOST=0.9995;RSQ=0.9835;ERATE=0.0003;THETA=0.0013;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58497849 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.958;LDAF=0.0927;AVGPOST=0.9913;RSQ=0.9629;ERATE=0.0004;THETA=0.0005;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 58497853 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0101;AVGPOST=0.9977;RSQ=0.8978;ERATE=0.0004;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58498251 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.4003;AVGPOST=0.9967;RSQ=0.9944;ERATE=0.0005;THETA=0.0009;AC=873;AN=2184 GT:DS:GL:BD 0.39972529 0 1 58498443 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58498626 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.642;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8963;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58498765 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6808;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58498844 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=0.9989;RSQ=0.3058;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 58498845 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0041;AVGPOST=0.9988;RSQ=0.8778;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58498984 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58498990 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7684;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58498999 . GT G 162 PASS INDEL;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7361;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58499059 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0147;AVGPOST=0.9994;RSQ=0.9853;ERATE=0.0003;THETA=0.0007;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58499070 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58499304 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.8944;ERATE=0.0005;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58499368 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8096;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58499379 . AAG A 118 PASS INDEL;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7258;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58499411 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3985;AVGPOST=0.9973;RSQ=0.9955;ERATE=0.0004;THETA=0.0002;AC=870;AN=2184 GT:DS:GL:BD 0.39835164 0 1 58499417 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0332;AVGPOST=0.9991;RSQ=0.9912;ERATE=0.0003;THETA=0.0003;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 58499517 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7754;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58499546 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.868;LDAF=0.0121;AVGPOST=0.9972;RSQ=0.9054;ERATE=0.0004;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58499569 . AG A 86 PASS INDEL;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6204;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58499854 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6817;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58500071 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.835;LDAF=0.0030;AVGPOST=0.9979;RSQ=0.7644;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58500072 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0026;AVGPOST=0.9978;RSQ=0.6713;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58500155 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5869;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58500258 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0230;AVGPOST=0.9998;RSQ=0.9960;ERATE=0.0003;THETA=0.0010;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 58500375 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2705;AVGPOST=0.9988;RSQ=0.9975;ERATE=0.0004;THETA=0.0004;AC=590;AN=2184 GT:DS:GL:BD 0.27014652 0 1 58500407 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58500409 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2819;AVGPOST=0.9985;RSQ=0.9971;ERATE=0.0004;THETA=0.0005;AC=615;AN=2184 GT:DS:GL:BD 0.28159341 0 1 58500414 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8407;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58500455 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8216;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58500502 . ATG A 19 PASS INDEL;BAVGPOST=0.998;BRSQ=0.702;LDAF=0.0035;AVGPOST=0.9966;RSQ=0.5916;ERATE=0.0017;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58500546 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7520;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58500611 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7660;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58500618 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58500735 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0111;AVGPOST=0.9989;RSQ=0.9610;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58500787 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2850;AVGPOST=0.9989;RSQ=0.9980;ERATE=0.0004;THETA=0.0007;AC=622;AN=2184 GT:DS:GL:BD 0.28479853 0 1 58500840 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8374;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58500961 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0342;AVGPOST=0.9999;RSQ=0.9983;ERATE=0.0003;THETA=0.0004;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 58500966 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2822;AVGPOST=0.9993;RSQ=0.9986;ERATE=0.0003;THETA=0.0002;AC=615;AN=2184 GT:DS:GL:BD 0.28159341 0 1 58500979 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9313;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58500996 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5871;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58501096 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0045;AVGPOST=0.9984;RSQ=0.8670;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58501139 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8252;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58501161 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3990;AVGPOST=0.9993;RSQ=0.9987;ERATE=0.0003;THETA=0.0002;AC=871;AN=2184 GT:DS:GL:BD 0.39880952 0 1 58501179 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58501194 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5726;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58501272 rs71720425 ATTGT A 18726 PASS INDEL;BAVGPOST=0.996;BRSQ=0.983;LDAF=0.0915;AVGPOST=0.9986;RSQ=0.9944;ERATE=0.0005;THETA=0.0006;AC=200;AN=2184 GT:DS:GL:BD 0.09157509 0 1 58501315 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.3965;AVGPOST=0.9984;RSQ=0.9973;ERATE=0.0005;THETA=0.0009;AC=866;AN=2184 GT:DS:GL:BD 0.39652014 0 1 58501535 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.723;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58501570 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0231;AVGPOST=0.9995;RSQ=0.9926;ERATE=0.0003;THETA=0.0003;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 58501589 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.862;LDAF=0.0030;AVGPOST=0.9991;RSQ=0.8676;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58501660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58501663 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9009;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58501675 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2522;AVGPOST=0.9988;RSQ=0.9978;ERATE=0.0003;THETA=0.0003;AC=549;AN=2184 GT:DS:GL:BD 0.25137362 0 1 58501725 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.902;LDAF=0.0356;AVGPOST=0.9920;RSQ=0.9067;ERATE=0.0005;THETA=0.0004;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 58501727 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58501759 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5655;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58501775 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6168;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58501781 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7344;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58501931 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0060;AVGPOST=0.9994;RSQ=0.9625;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58502198 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9268;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58502280 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2519;AVGPOST=0.9994;RSQ=0.9988;ERATE=0.0003;THETA=0.0004;AC=549;AN=2184 GT:DS:GL:BD 0.25137362 0 1 58502343 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7784;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58502362 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0013;AVGPOST=0.9996;RSQ=0.8569;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58502463 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8702;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58502539 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58502643 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1185;AVGPOST=0.9998;RSQ=0.9992;ERATE=0.0003;THETA=0.0010;AC=259;AN=2184 GT:DS:GL:BD 0.11858974 0 1 58502665 . T TC 412 PASS INDEL;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7800;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58502667 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3983;AVGPOST=0.9982;RSQ=0.9977;ERATE=0.0003;THETA=0.0004;AC=870;AN=2184 GT:DS:GL:BD 0.39835164 0 1 58502692 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0001;AVGPOST=0.9999;RSQ=0.0499;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 58502699 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0139;AVGPOST=0.9993;RSQ=0.9812;ERATE=0.0003;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58502705 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0356;AVGPOST=0.9991;RSQ=0.9908;ERATE=0.0003;THETA=0.0002;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 58502739 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9634;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58502762 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58502763 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9263;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58502764 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7819;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58502877 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8667;ERATE=0.0015;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58502897 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8770;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58502967 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2815;AVGPOST=0.9989;RSQ=0.9980;ERATE=0.0004;THETA=0.0035;AC=615;AN=2184 GT:DS:GL:BD 0.28159341 0 1 58503043 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6351;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58503371 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.3981;AVGPOST=0.9968;RSQ=0.9949;ERATE=0.0008;THETA=0.0006;AC=869;AN=2184 GT:DS:GL:BD 0.39789379 0 1 58503587 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0576;AVGPOST=0.9987;RSQ=0.9917;ERATE=0.0004;THETA=0.0007;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 58503609 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6550;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58503616 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58503620 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0011;AVGPOST=0.9984;RSQ=0.3778;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58503656 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.746;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5348;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58503686 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3978;AVGPOST=0.9991;RSQ=0.9984;ERATE=0.0004;THETA=0.0007;AC=868;AN=2184 GT:DS:GL:BD 0.39743590 0 1 58503833 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0269;AVGPOST=0.9991;RSQ=0.9852;ERATE=0.0004;THETA=0.0003;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 58503888 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.715;LDAF=0.0746;AVGPOST=0.9398;RSQ=0.6870;ERATE=0.0193;THETA=0.0010;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 58503895 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58503940 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.306;LDAF=0.0004;AVGPOST=0.9997;RSQ=0.7164;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58504049 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58504160 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3965;AVGPOST=0.9980;RSQ=0.9967;ERATE=0.0005;THETA=0.0005;AC=866;AN=2184 GT:DS:GL:BD 0.39652014 0 1 58504176 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58504204 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0240;AVGPOST=0.9983;RSQ=0.9788;ERATE=0.0004;THETA=0.0005;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 58504248 . TC T 167 PASS INDEL;BAVGPOST=0.920;BRSQ=0.454;LDAF=0.0751;AVGPOST=0.9143;RSQ=0.5398;ERATE=0.0076;THETA=0.0012;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 58504250 rs34814864 CT C 27772 PASS INDEL;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3977;AVGPOST=0.9980;RSQ=0.9963;ERATE=0.0006;THETA=0.0006;AC=868;AN=2184 GT:DS:GL:BD 0.39743590 0 1 58504257 . TA T 222 PASS INDEL;BAVGPOST=0.869;BRSQ=0.391;LDAF=0.1351;AVGPOST=0.8425;RSQ=0.4683;ERATE=0.0132;THETA=0.0002;AC=171;AN=2184 GT:DS:GL:BD 0.07829671 0 1 58504307 rs61433637 G GGGGT 6365 PASS INDEL;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0272;AVGPOST=0.9982;RSQ=0.9703;ERATE=0.0005;THETA=0.0003;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 58504310 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.6238;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58504311 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58504316 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0230;AVGPOST=0.9997;RSQ=0.9936;ERATE=0.0003;THETA=0.0003;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 58504408 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.4005;AVGPOST=0.9989;RSQ=0.9982;ERATE=0.0004;THETA=0.0005;AC=875;AN=2184 GT:DS:GL:BD 0.40064102 0 1 58504433 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7400;ERATE=0.0012;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58504500 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58504707 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7860;ERATE=0.0006;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58504710 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58504751 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58504780 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1168;AVGPOST=0.9995;RSQ=0.9985;ERATE=0.0003;THETA=0.0002;AC=256;AN=2184 GT:DS:GL:BD 0.11721612 0 1 58504793 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0146;AVGPOST=0.9999;RSQ=0.9973;ERATE=0.0003;THETA=0.0002;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58504836 . CT C 75 PASS INDEL;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4851;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58504861 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4001;AVGPOST=0.9983;RSQ=0.9975;ERATE=0.0003;THETA=0.0002;AC=873;AN=2184 GT:DS:GL:BD 0.39972529 0 1 58504911 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8657;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58504916 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58505004 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0064;AVGPOST=0.9991;RSQ=0.9465;ERATE=0.0003;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58505042 . AC A 1173 PASS INDEL;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0083;AVGPOST=0.9987;RSQ=0.9354;ERATE=0.0004;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58505060 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0053;AVGPOST=0.9992;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58505071 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6406;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58505110 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0031;AVGPOST=0.9976;RSQ=0.7058;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58505215 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0005;AVGPOST=0.9993;RSQ=0.4304;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58505229 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6037;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58505252 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3978;AVGPOST=0.9979;RSQ=0.9964;ERATE=0.0005;THETA=0.0006;AC=868;AN=2184 GT:DS:GL:BD 0.39743590 0 1 58505378 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.984;LDAF=0.0803;AVGPOST=0.9982;RSQ=0.9909;ERATE=0.0004;THETA=0.0003;AC=175;AN=2184 GT:DS:GL:BD 0.08012821 0 1 58505389 . G GT 22 PASS INDEL;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0019;AVGPOST=0.9969;RSQ=0.2717;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58505463 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0923;AVGPOST=0.9978;RSQ=0.9917;ERATE=0.0004;THETA=0.0007;AC=201;AN=2184 GT:DS:GL:BD 0.09203297 0 1 58505500 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0087;AVGPOST=0.9990;RSQ=0.9557;ERATE=0.0004;THETA=0.0009;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58505638 . C CA 272 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0089;AVGPOST=0.9937;RSQ=0.7862;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58505705 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.7414;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58505767 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0072;AVGPOST=0.9993;RSQ=0.9618;ERATE=0.0004;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58505826 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6109;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58505833 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0146;AVGPOST=0.9997;RSQ=0.9927;ERATE=0.0003;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58505961 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7702;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58505972 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6288;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58505982 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5736;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58506049 . A AC 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0031;AVGPOST=0.9971;RSQ=0.5703;ERATE=0.0006;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58506055 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6947;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58506078 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.921;LDAF=0.0074;AVGPOST=0.9988;RSQ=0.9328;ERATE=0.0005;THETA=0.0011;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58506099 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0149;AVGPOST=0.9995;RSQ=0.9842;ERATE=0.0005;THETA=0.0011;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58506133 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.799;LDAF=0.0111;AVGPOST=0.9964;RSQ=0.8656;ERATE=0.0005;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58506291 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5592;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58506295 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58506303 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2932;AVGPOST=0.9992;RSQ=0.9983;ERATE=0.0003;THETA=0.0005;AC=639;AN=2184 GT:DS:GL:BD 0.29258242 0 1 58506345 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58506528 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58506588 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0023;AVGPOST=0.9965;RSQ=0.4386;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58506669 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.665;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6850;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58506673 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0230;AVGPOST=0.9997;RSQ=0.9955;ERATE=0.0003;THETA=0.0004;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 58506689 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0230;AVGPOST=0.9998;RSQ=0.9963;ERATE=0.0003;THETA=0.0009;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 58506783 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4121;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0004;THETA=0.0002;AC=900;AN=2184 GT:DS:GL:BD 0.41208792 0 1 58506843 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.906;LDAF=0.0076;AVGPOST=0.9985;RSQ=0.9139;ERATE=0.0003;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58506943 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3862;AVGPOST=0.9989;RSQ=0.9980;ERATE=0.0004;THETA=0.0004;AC=843;AN=2184 GT:DS:GL:BD 0.38598901 0 1 58506986 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58507099 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58507107 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4098;AVGPOST=0.9994;RSQ=0.9989;ERATE=0.0004;THETA=0.0004;AC=895;AN=2184 GT:DS:GL:BD 0.40979853 0 1 58507283 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0047;AVGPOST=0.9984;RSQ=0.8745;ERATE=0.0003;THETA=0.0012;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58507330 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.839;LDAF=0.0060;AVGPOST=0.9988;RSQ=0.9249;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58507342 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0035;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58507390 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.7096;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58507408 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58507412 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0088;AVGPOST=0.9989;RSQ=0.9491;ERATE=0.0003;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58507462 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58507473 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.703;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58507492 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0272;AVGPOST=0.9995;RSQ=0.9928;ERATE=0.0004;THETA=0.0005;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 58507496 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.6359;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58507546 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58507580 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7363;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58507587 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7467;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58507657 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58507737 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58507819 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0087;AVGPOST=0.9985;RSQ=0.9252;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58507822 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.4120;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0005;THETA=0.0003;AC=900;AN=2184 GT:DS:GL:BD 0.41208792 0 1 58507871 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0026;AVGPOST=0.9990;RSQ=0.8597;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58507929 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0271;AVGPOST=0.9998;RSQ=0.9973;ERATE=0.0003;THETA=0.0004;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 58507989 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4122;AVGPOST=0.9986;RSQ=0.9974;ERATE=0.0006;THETA=0.0002;AC=900;AN=2184 GT:DS:GL:BD 0.41208792 0 1 58507999 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0081;AVGPOST=0.9992;RSQ=0.9580;ERATE=0.0003;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58508013 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.4124;AVGPOST=0.9989;RSQ=0.9980;ERATE=0.0003;THETA=0.0003;AC=900;AN=2184 GT:DS:GL:BD 0.41208792 0 1 58508036 . CATTT C 143 PASS INDEL;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5980;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58508092 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58508335 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4109;AVGPOST=0.9987;RSQ=0.9978;ERATE=0.0004;THETA=0.0005;AC=898;AN=2184 GT:DS:GL:BD 0.41117215 0 1 58508474 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0105;AVGPOST=0.9974;RSQ=0.9275;ERATE=0.0003;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58508487 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8410;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58508535 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5809;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58508567 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9305;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58508582 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58508589 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0075;AVGPOST=0.9997;RSQ=0.9794;ERATE=0.0004;THETA=0.0013;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58508616 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.700;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58508623 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0146;AVGPOST=0.9995;RSQ=0.9860;ERATE=0.0004;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58508706 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4081;AVGPOST=0.9967;RSQ=0.9946;ERATE=0.0005;THETA=0.0003;AC=889;AN=2184 GT:DS:GL:BD 0.40705130 0 1 58508948 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0032;AVGPOST=0.9985;RSQ=0.8136;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58508993 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4120;AVGPOST=0.9980;RSQ=0.9964;ERATE=0.0007;THETA=0.0006;AC=900;AN=2184 GT:DS:GL:BD 0.41208792 0 1 58509014 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0030;AVGPOST=0.9993;RSQ=0.9131;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58509072 . AAG A 2983 PASS INDEL;BAVGPOST=0.998;BRSQ=0.966;LDAF=0.0264;AVGPOST=0.9970;RSQ=0.9501;ERATE=0.0004;THETA=0.0003;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 58509074 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.599;LDAF=0.0065;AVGPOST=0.9898;RSQ=0.4963;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58509173 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0080;AVGPOST=0.9987;RSQ=0.9333;ERATE=0.0004;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58509195 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0031;AVGPOST=0.9994;RSQ=0.9212;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58509211 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9525;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58509344 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6620;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58509387 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.804;LDAF=0.0040;AVGPOST=0.9989;RSQ=0.9012;ERATE=0.0003;THETA=0.0022;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58509396 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0081;AVGPOST=0.9979;RSQ=0.8997;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58509423 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.600;LDAF=0.0031;AVGPOST=0.9973;RSQ=0.6411;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58509458 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.681;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6852;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58509462 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0052;AVGPOST=0.9971;RSQ=0.7769;ERATE=0.0005;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58509502 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0064;AVGPOST=0.9981;RSQ=0.8904;ERATE=0.0006;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58509509 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.989;LDAF=0.4100;AVGPOST=0.9915;RSQ=0.9869;ERATE=0.0012;THETA=0.0004;AC=895;AN=2184 GT:DS:GL:BD 0.40979853 0 1 58509514 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.699;LDAF=0.0061;AVGPOST=0.9954;RSQ=0.6897;ERATE=0.0005;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58509581 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0023;AVGPOST=0.9996;RSQ=0.9297;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58509641 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.948;LDAF=0.0324;AVGPOST=0.9975;RSQ=0.9712;ERATE=0.0006;THETA=0.0005;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 58509756 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4084;AVGPOST=0.9979;RSQ=0.9967;ERATE=0.0004;THETA=0.0012;AC=890;AN=2184 GT:DS:GL:BD 0.40750915 0 1 58509890 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58509937 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.782;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8608;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58509948 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.618;LDAF=0.0021;AVGPOST=0.9972;RSQ=0.5592;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58510058 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58510080 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.790;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.8059;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58510146 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7364;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58510233 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.816;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8481;ERATE=0.0004;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58510240 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58510309 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8199;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58510369 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0346;AVGPOST=0.9993;RSQ=0.9900;ERATE=0.0004;THETA=0.0007;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 58510491 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.742;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6633;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58510707 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.3091;AVGPOST=0.9953;RSQ=0.9920;ERATE=0.0015;THETA=0.0010;AC=674;AN=2184 GT:DS:GL:BD 0.30860806 0 1 58510733 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.701;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.6010;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58510858 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2805;AVGPOST=0.9952;RSQ=0.9918;ERATE=0.0006;THETA=0.0006;AC=610;AN=2184 GT:DS:GL:BD 0.27930403 0 1 58510898 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0065;AVGPOST=0.9988;RSQ=0.9237;ERATE=0.0004;THETA=0.0052;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58510939 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0021;AVGPOST=0.9968;RSQ=0.3473;ERATE=0.0007;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58510947 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.839;LDAF=0.0075;AVGPOST=0.9980;RSQ=0.8870;ERATE=0.0005;THETA=0.0016;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58511048 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3112;AVGPOST=0.9960;RSQ=0.9934;ERATE=0.0005;THETA=0.0007;AC=680;AN=2184 GT:DS:GL:BD 0.31135532 0 1 58511102 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0107;AVGPOST=0.9996;RSQ=0.9815;ERATE=0.0003;THETA=0.0025;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58511233 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0079;AVGPOST=0.9984;RSQ=0.9246;ERATE=0.0004;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58511292 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9381;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58511359 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0069;AVGPOST=0.9993;RSQ=0.9584;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58511370 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0219;AVGPOST=0.9996;RSQ=0.9930;ERATE=0.0003;THETA=0.0056;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 58511407 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3916;AVGPOST=0.9971;RSQ=0.9953;ERATE=0.0008;THETA=0.0003;AC=854;AN=2184 GT:DS:GL:BD 0.39102563 0 1 58511441 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9943;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58511474 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.982;LDAF=0.3894;AVGPOST=0.9870;RSQ=0.9804;ERATE=0.0007;THETA=0.0003;AC=851;AN=2184 GT:DS:GL:BD 0.38965201 0 1 58511481 rs72265614 CT C 32331 PASS INDEL;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.3904;AVGPOST=0.9944;RSQ=0.9903;ERATE=0.0016;THETA=0.0006;AC=852;AN=2184 GT:DS:GL:BD 0.39010990 0 1 58511688 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.4387;AVGPOST=0.9970;RSQ=0.9947;ERATE=0.0007;THETA=0.0027;AC=957;AN=2184 GT:DS:GL:BD 0.43818682 0 1 58511821 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4082;AVGPOST=0.9967;RSQ=0.9945;ERATE=0.0008;THETA=0.0002;AC=890;AN=2184 GT:DS:GL:BD 0.40750915 0 1 58511971 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8951;ERATE=0.0003;THETA=0.0032;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58512019 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58512049 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3583;AVGPOST=0.9978;RSQ=0.9965;ERATE=0.0004;THETA=0.0023;AC=781;AN=2184 GT:DS:GL:BD 0.35760072 0 1 58512158 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0043;AVGPOST=0.9986;RSQ=0.8766;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58512203 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58512304 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58512529 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58512614 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6345;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58512716 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9927;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58512776 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0319;AVGPOST=0.9990;RSQ=0.9899;ERATE=0.0004;THETA=0.0007;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 58512808 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0315;AVGPOST=0.9984;RSQ=0.9840;ERATE=0.0004;THETA=0.0004;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 58512827 . T TCACC 8251 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0325;AVGPOST=0.9971;RSQ=0.9684;ERATE=0.0006;THETA=0.0005;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 58512923 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0032;AVGPOST=0.9979;RSQ=0.7462;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58513042 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0098;AVGPOST=0.9996;RSQ=0.9847;ERATE=0.0003;THETA=0.0009;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58513052 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0030;AVGPOST=0.9990;RSQ=0.8552;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58513082 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5805;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58513115 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.593;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6746;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58513188 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0321;AVGPOST=0.9995;RSQ=0.9930;ERATE=0.0003;THETA=0.0005;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 58513196 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3607;AVGPOST=0.9965;RSQ=0.9945;ERATE=0.0006;THETA=0.0003;AC=788;AN=2184 GT:DS:GL:BD 0.36080587 0 1 58513236 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0002;AVGPOST=0.9996;RSQ=0.2372;ERATE=0.0003;THETA=0.0014;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 58513251 . AT A 100 PASS INDEL;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0035;AVGPOST=0.9965;RSQ=0.6109;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58513259 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0003;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58513262 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4830;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58513315 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0014;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58513369 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58513458 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0093;AVGPOST=0.9968;RSQ=0.8842;ERATE=0.0003;THETA=0.0011;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58513467 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8476;ERATE=0.0003;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58513512 . A AT 2512 PASS INDEL;BAVGPOST=0.997;BRSQ=0.961;LDAF=0.0243;AVGPOST=0.9980;RSQ=0.9713;ERATE=0.0003;THETA=0.0010;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 58513513 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0320;AVGPOST=0.9990;RSQ=0.9894;ERATE=0.0003;THETA=0.0007;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 58513537 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0321;AVGPOST=0.9993;RSQ=0.9926;ERATE=0.0003;THETA=0.0009;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 58513545 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0071;AVGPOST=0.9990;RSQ=0.9473;ERATE=0.0003;THETA=0.0011;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58513621 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0327;AVGPOST=0.9995;RSQ=0.9939;ERATE=0.0003;THETA=0.0041;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 58513680 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58513885 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7234;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58513891 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0033;AVGPOST=0.9990;RSQ=0.8807;ERATE=0.0003;THETA=0.0014;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58513917 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58513919 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58513926 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8345;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58513951 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2451;AVGPOST=0.9996;RSQ=0.9991;ERATE=0.0004;THETA=0.0010;AC=535;AN=2184 GT:DS:GL:BD 0.24496336 0 1 58514090 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2803;AVGPOST=0.9997;RSQ=0.9994;ERATE=0.0019;THETA=0.0009;AC=612;AN=2184 GT:DS:GL:BD 0.28021979 0 1 58514120 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0266;AVGPOST=0.9989;RSQ=0.9838;ERATE=0.0013;THETA=0.0010;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 58514211 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0096;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58514349 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9469;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58514373 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9833;ERATE=0.0004;THETA=0.0048;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58514376 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58514399 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0050;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58514402 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0263;AVGPOST=0.9995;RSQ=0.9923;ERATE=0.0003;THETA=0.0006;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 58514448 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0013;AVGPOST=0.9998;RSQ=0.9210;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58514484 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0508;AVGPOST=0.9998;RSQ=0.9983;ERATE=0.0003;THETA=0.0034;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 58514539 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0072;AVGPOST=0.9993;RSQ=0.9658;ERATE=0.0004;THETA=0.0021;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58514602 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6941;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58514640 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.9175;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58514691 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58514847 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0056;AVGPOST=0.9997;RSQ=0.9773;ERATE=0.0003;THETA=0.0024;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58514848 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.813;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58515123 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0288;AVGPOST=1.0000;RSQ=0.9992;ERATE=0.0003;THETA=0.0013;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 58515129 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0343;AVGPOST=0.9999;RSQ=0.9989;ERATE=0.0003;THETA=0.0017;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 58515141 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.5211;ERATE=0.0003;THETA=0.0009;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 58515174 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58515209 . A AG 10 PASS INDEL;BAVGPOST=0.999;BRSQ=0.793;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58515218 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0796;AVGPOST=0.9997;RSQ=0.9980;ERATE=0.0004;THETA=0.0006;AC=174;AN=2184 GT:DS:GL:BD 0.07967033 0 1 58515219 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2086;AVGPOST=0.9979;RSQ=0.9947;ERATE=0.0005;THETA=0.0003;AC=456;AN=2184 GT:DS:GL:BD 0.20879121 0 1 58515361 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58515381 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0261;AVGPOST=0.9983;RSQ=0.9787;ERATE=0.0004;THETA=0.0024;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 58515408 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1559;AVGPOST=0.9985;RSQ=0.9954;ERATE=0.0005;THETA=0.0007;AC=340;AN=2184 GT:DS:GL:BD 0.15567766 0 1 58515484 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8316;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58515497 . C CAA 1966 PASS INDEL;BAVGPOST=0.957;BRSQ=0.824;LDAF=0.1641;AVGPOST=0.9463;RSQ=0.8427;ERATE=0.0133;THETA=0.0007;AC=350;AN=2184 GT:DS:GL:BD 0.16025642 0 1 58515563 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6758;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58515583 rs11439889 G GA 17829 PASS INDEL;BAVGPOST=0.990;BRSQ=0.975;LDAF=0.2145;AVGPOST=0.9964;RSQ=0.9911;ERATE=0.0005;THETA=0.0015;AC=468;AN=2184 GT:DS:GL:BD 0.21428572 0 1 58515587 . A AT 160 PASS INDEL;BAVGPOST=0.906;BRSQ=0.639;LDAF=0.1329;AVGPOST=0.9304;RSQ=0.7922;ERATE=0.0007;THETA=0.0005;AC=293;AN=2184 GT:DS:GL:BD 0.13415751 0 1 58515592 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0029;AVGPOST=0.9989;RSQ=0.8827;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58515668 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0324;AVGPOST=0.9993;RSQ=0.9921;ERATE=0.0004;THETA=0.0003;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 58515684 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0018;AVGPOST=0.9993;RSQ=0.8508;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58515691 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0023;AVGPOST=0.9998;RSQ=0.9628;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58515776 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3238;AVGPOST=0.9984;RSQ=0.9971;ERATE=0.0007;THETA=0.0006;AC=707;AN=2184 GT:DS:GL:BD 0.32371795 0 1 58515821 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8031;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58515837 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7163;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58515890 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0061;AVGPOST=0.9978;RSQ=0.8436;ERATE=0.0008;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58515911 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3234;AVGPOST=0.9985;RSQ=0.9971;ERATE=0.0005;THETA=0.0003;AC=707;AN=2184 GT:DS:GL:BD 0.32371795 0 1 58515917 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9107;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58516330 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.887;LDAF=0.2064;AVGPOST=0.9893;RSQ=0.9749;ERATE=0.0008;THETA=0.0017;AC=454;AN=2184 GT:DS:GL:BD 0.20787546 0 1 58516448 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.969;LDAF=0.0278;AVGPOST=0.9973;RSQ=0.9667;ERATE=0.0003;THETA=0.0007;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 58516480 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.619;LDAF=0.0093;AVGPOST=0.9931;RSQ=0.6826;ERATE=0.0005;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58516518 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7441;ERATE=0.0004;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58516545 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0079;AVGPOST=0.9988;RSQ=0.9287;ERATE=0.0004;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58516676 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0063;AVGPOST=0.9985;RSQ=0.8923;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58516679 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0384;AVGPOST=0.9976;RSQ=0.9752;ERATE=0.0005;THETA=0.0004;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 58516720 . A AT 81 PASS INDEL;BAVGPOST=0.999;BRSQ=0.411;LDAF=0.0027;AVGPOST=0.9955;RSQ=0.2860;ERATE=0.0007;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58516727 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0132;AVGPOST=0.9921;RSQ=0.7456;ERATE=0.0020;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58516885 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.535;LDAF=0.0087;AVGPOST=0.9913;RSQ=0.6034;ERATE=0.0009;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58516942 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.926;LDAF=0.3089;AVGPOST=0.9527;RSQ=0.9203;ERATE=0.0056;THETA=0.0003;AC=690;AN=2184 GT:DS:GL:BD 0.31593406 0 1 58516988 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0045;AVGPOST=0.9980;RSQ=0.8072;ERATE=0.0007;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58517014 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.718;LDAF=0.0037;AVGPOST=0.9960;RSQ=0.5658;ERATE=0.0009;THETA=0.0029;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58517035 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.949;BRSQ=0.861;LDAF=0.2208;AVGPOST=0.9634;RSQ=0.9267;ERATE=0.0022;THETA=0.0008;AC=487;AN=2184 GT:DS:GL:BD 0.22298534 0 1 58517083 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4415;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58517086 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.5549;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58517119 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5624;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58517168 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.960;LDAF=0.3163;AVGPOST=0.9822;RSQ=0.9697;ERATE=0.0029;THETA=0.0008;AC=694;AN=2184 GT:DS:GL:BD 0.31776556 0 1 58517172 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0059;AVGPOST=0.9977;RSQ=0.8397;ERATE=0.0004;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58517185 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.980;LDAF=0.4953;AVGPOST=0.9810;RSQ=0.9727;ERATE=0.0030;THETA=0.0005;AC=1082;AN=2184 GT:DS:GL:BD 0.49542123 0 1 58517217 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7946;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58517236 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.721;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58517312 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.783;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6852;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58517343 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.2116;AVGPOST=0.9965;RSQ=0.9929;ERATE=0.0004;THETA=0.0004;AC=460;AN=2184 GT:DS:GL:BD 0.21062271 0 1 58517349 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9133;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58517352 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7844;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58517548 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0078;AVGPOST=0.9966;RSQ=0.8495;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58517550 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0079;AVGPOST=0.9964;RSQ=0.8427;ERATE=0.0004;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58517552 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0078;AVGPOST=0.9965;RSQ=0.8481;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58517573 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6564;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58517692 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.748;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5916;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58517721 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0110;AVGPOST=0.9937;RSQ=0.7572;ERATE=0.0008;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58517732 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.694;LDAF=0.0076;AVGPOST=0.9955;RSQ=0.7838;ERATE=0.0005;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58517818 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0020;AVGPOST=0.9978;RSQ=0.4946;ERATE=0.0009;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58517823 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0084;AVGPOST=0.9977;RSQ=0.8926;ERATE=0.0004;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58517843 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0018;AVGPOST=0.9976;RSQ=0.4881;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58517898 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.947;LDAF=0.2380;AVGPOST=0.9764;RSQ=0.9564;ERATE=0.0026;THETA=0.0004;AC=523;AN=2184 GT:DS:GL:BD 0.23946886 0 1 58517968 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.817;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5590;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58518056 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0035;AVGPOST=0.9976;RSQ=0.7441;ERATE=0.0008;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58518076 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.6919;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58518285 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.443;LDAF=0.0034;AVGPOST=0.9986;RSQ=0.8088;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58518306 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.572;LDAF=0.0020;AVGPOST=0.9973;RSQ=0.4985;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58518434 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6902;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58518573 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58518636 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0004;AVGPOST=0.9993;RSQ=0.3308;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 58518681 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0254;AVGPOST=0.9990;RSQ=0.9844;ERATE=0.0004;THETA=0.0002;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 58518720 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8613;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58518784 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3237;AVGPOST=0.9986;RSQ=0.9976;ERATE=0.0004;THETA=0.0004;AC=708;AN=2184 GT:DS:GL:BD 0.32417583 0 1 58518872 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5016;AVGPOST=0.9967;RSQ=0.9951;ERATE=0.0004;THETA=0.0004;AC=1095;AN=2184 GT:DS:GL:BD 0.50137365 1 1 58518909 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.2168;AVGPOST=0.9981;RSQ=0.9955;ERATE=0.0005;THETA=0.0002;AC=473;AN=2184 GT:DS:GL:BD 0.21657509 0 1 58518941 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.968;LDAF=0.0385;AVGPOST=0.9955;RSQ=0.9517;ERATE=0.0004;THETA=0.0007;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 58519038 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8928;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58519060 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0343;AVGPOST=0.9994;RSQ=0.9927;ERATE=0.0004;THETA=0.0004;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 58519112 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6145;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58519136 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0042;AVGPOST=0.9995;RSQ=0.9391;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58519300 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9910;ERATE=0.0003;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58519366 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58519458 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0073;AVGPOST=0.9998;RSQ=0.9850;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58519488 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58519543 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.7014;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58519672 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0398;AVGPOST=0.9979;RSQ=0.9853;ERATE=0.0003;THETA=0.0003;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 58519692 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0065;AVGPOST=0.9990;RSQ=0.9412;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58519712 . A AGG 6812 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0262;AVGPOST=0.9995;RSQ=0.9923;ERATE=0.0003;THETA=0.0008;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 58519841 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58520106 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.985;LDAF=0.0897;AVGPOST=0.9996;RSQ=0.9977;ERATE=0.0003;THETA=0.0003;AC=196;AN=2184 GT:DS:GL:BD 0.08974359 0 1 58520203 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58520255 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58520295 . TC T 56 PASS INDEL;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6894;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58520314 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0453;AVGPOST=0.9997;RSQ=0.9974;ERATE=0.0003;THETA=0.0003;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 58520341 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.841;LDAF=0.0018;AVGPOST=0.9994;RSQ=0.8557;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58520486 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58520500 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1908;AVGPOST=0.9991;RSQ=0.9976;ERATE=0.0004;THETA=0.0004;AC=417;AN=2184 GT:DS:GL:BD 0.19093406 0 1 58520508 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0440;AVGPOST=0.9996;RSQ=0.9969;ERATE=0.0003;THETA=0.0018;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 58520513 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0004;AVGPOST=0.9995;RSQ=0.4885;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 58520611 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6651;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58520674 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6629;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58520774 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3265;AVGPOST=0.9981;RSQ=0.9966;ERATE=0.0004;THETA=0.0005;AC=713;AN=2184 GT:DS:GL:BD 0.32646519 0 1 58520813 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0444;AVGPOST=0.9999;RSQ=0.9986;ERATE=0.0003;THETA=0.0006;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 58520915 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0445;AVGPOST=0.9995;RSQ=0.9957;ERATE=0.0003;THETA=0.0006;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 58520940 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58520995 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0111;AVGPOST=0.9998;RSQ=0.9920;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58521041 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0442;AVGPOST=0.9996;RSQ=0.9961;ERATE=0.0003;THETA=0.0007;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 58521067 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58521077 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58521170 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.6592;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58521196 rs67787534 A AT 16323 PASS INDEL;BAVGPOST=0.988;BRSQ=0.960;LDAF=0.1840;AVGPOST=0.9900;RSQ=0.9768;ERATE=0.0004;THETA=0.0007;AC=404;AN=2184 GT:DS:GL:BD 0.18498169 0 1 58521199 . TG T 8108 PASS INDEL;BAVGPOST=0.987;BRSQ=0.960;LDAF=0.1835;AVGPOST=0.9897;RSQ=0.9761;ERATE=0.0004;THETA=0.0003;AC=404;AN=2184 GT:DS:GL:BD 0.18498169 0 1 58521202 . TG T 8499 PASS INDEL;BAVGPOST=0.958;BRSQ=0.883;LDAF=0.2199;AVGPOST=0.9325;RSQ=0.8518;ERATE=0.0187;THETA=0.0008;AC=457;AN=2184 GT:DS:GL:BD 0.20924908 0 1 58521203 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8267;AVGPOST=0.9988;RSQ=0.9967;ERATE=0.0003;THETA=0.0013;AC=1805;AN=2184 GT:DS:GL:BD 0.82646519 1 1 58521236 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8753;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58521300 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7496;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58521335 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1834;AVGPOST=0.9990;RSQ=0.9971;ERATE=0.0003;THETA=0.0012;AC=400;AN=2184 GT:DS:GL:BD 0.18315019 0 1 58521340 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.5079;AVGPOST=0.9947;RSQ=0.9923;ERATE=0.0007;THETA=0.0008;AC=1106;AN=2184 GT:DS:GL:BD 0.50641024 1 1 58521448 rs113281185 CTCACTGCAACCTCTG C 12730 PASS INDEL;BAVGPOST=0.851;BRSQ=0.660;LDAF=0.2222;AVGPOST=0.8555;RSQ=0.7046;ERATE=0.0245;THETA=0.0006;AC=442;AN=2184 GT:DS:GL:BD 0.20238096 0 1 58521465 . C CT 1178 PASS INDEL;BAVGPOST=0.927;BRSQ=0.513;LDAF=0.1159;AVGPOST=0.8978;RSQ=0.6078;ERATE=0.0151;THETA=0.0005;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 58521520 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.0917;AVGPOST=0.9990;RSQ=0.9947;ERATE=0.0003;THETA=0.0004;AC=200;AN=2184 GT:DS:GL:BD 0.09157509 0 1 58521580 . T TATTA 2094 PASS INDEL;BAVGPOST=0.934;BRSQ=0.639;LDAF=0.1157;AVGPOST=0.9211;RSQ=0.6998;ERATE=0.0157;THETA=0.0005;AC=206;AN=2184 GT:DS:GL:BD 0.09432235 0 1 58521640 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.917;LDAF=0.0207;AVGPOST=0.9952;RSQ=0.9073;ERATE=0.0003;THETA=0.0002;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 58521653 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9678;ERATE=0.0004;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58521671 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.984;LDAF=0.0873;AVGPOST=0.9990;RSQ=0.9945;ERATE=0.0004;THETA=0.0013;AC=191;AN=2184 GT:DS:GL:BD 0.08745421 0 1 58521707 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0120;AVGPOST=0.9986;RSQ=0.9538;ERATE=0.0003;THETA=0.0008;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 58521854 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.5890;ERATE=0.0006;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58521855 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0116;AVGPOST=0.9996;RSQ=0.9853;ERATE=0.0004;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 58521869 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0037;AVGPOST=0.9988;RSQ=0.8741;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58521975 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0068;AVGPOST=0.9992;RSQ=0.9483;ERATE=0.0003;THETA=0.0035;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58522070 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0134;AVGPOST=0.9991;RSQ=0.9690;ERATE=0.0003;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 58522089 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0064;AVGPOST=0.9988;RSQ=0.9243;ERATE=0.0004;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58522107 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58522181 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58522203 . A AT 10970 PASS INDEL;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0416;AVGPOST=0.9991;RSQ=0.9915;ERATE=0.0004;THETA=0.0004;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 58522301 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0061;AVGPOST=0.9994;RSQ=0.9680;ERATE=0.0003;THETA=0.0010;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58522387 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0301;AVGPOST=0.9994;RSQ=0.9917;ERATE=0.0003;THETA=0.0003;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 58522407 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0050;AVGPOST=0.9985;RSQ=0.8999;ERATE=0.0003;THETA=0.0057;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58522420 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.8204;AVGPOST=0.9971;RSQ=0.9921;ERATE=0.0005;THETA=0.0005;AC=1792;AN=2184 GT:DS:GL:BD 0.82051283 1 1 58522454 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.1996;AVGPOST=0.9971;RSQ=0.9931;ERATE=0.0004;THETA=0.0084;AC=435;AN=2184 GT:DS:GL:BD 0.19917582 0 1 58522518 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0054;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58522557 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.975;LDAF=0.0242;AVGPOST=0.9977;RSQ=0.9668;ERATE=0.0003;THETA=0.0205;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 58522624 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1960;AVGPOST=0.9942;RSQ=0.9873;ERATE=0.0004;THETA=0.0007;AC=425;AN=2184 GT:DS:GL:BD 0.19459707 0 1 58522627 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1961;AVGPOST=0.9947;RSQ=0.9884;ERATE=0.0003;THETA=0.0080;AC=425;AN=2184 GT:DS:GL:BD 0.19459707 0 1 58522628 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7280;ERATE=0.0003;THETA=0.0096;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58522674 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9475;ERATE=0.0003;THETA=0.0095;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58522678 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0024;AVGPOST=0.9984;RSQ=0.7251;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58522682 rs3834032 CTT C 5226 PASS INDEL;BAVGPOST=0.995;BRSQ=0.905;LDAF=0.0251;AVGPOST=0.9963;RSQ=0.9410;ERATE=0.0005;THETA=0.0029;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 58522733 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.980;LDAF=0.0354;AVGPOST=0.9966;RSQ=0.9711;ERATE=0.0003;THETA=0.0020;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 58522773 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0057;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58522846 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0056;AVGPOST=0.9976;RSQ=0.8331;ERATE=0.0024;THETA=0.0043;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58522883 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.956;BRSQ=0.926;LDAF=0.3939;AVGPOST=0.9479;RSQ=0.9206;ERATE=0.0211;THETA=0.0080;AC=847;AN=2184 GT:DS:GL:BD 0.38782051 0 1 58522914 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0130;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58522955 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6496;ERATE=0.0004;THETA=0.0113;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58522978 . GC G 10 PASS INDEL;BAVGPOST=0.999;BRSQ=0.824;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6644;ERATE=0.0003;THETA=0.0090;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58523168 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.964;LDAF=0.0152;AVGPOST=0.9975;RSQ=0.9385;ERATE=0.0004;THETA=0.0057;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58523195 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.7953;ERATE=0.0004;THETA=0.0076;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58523240 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0082;AVGPOST=0.9996;RSQ=0.9802;ERATE=0.0003;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58523307 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0040;AVGPOST=0.9983;RSQ=0.8344;ERATE=0.0004;THETA=0.0021;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58523314 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.787;LDAF=0.0031;AVGPOST=0.9987;RSQ=0.8190;ERATE=0.0005;THETA=0.0092;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58523336 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7320;ERATE=0.0003;THETA=0.0102;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58523346 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.970;LDAF=0.5246;AVGPOST=0.9833;RSQ=0.9770;ERATE=0.0006;THETA=0.0053;AC=1146;AN=2184 GT:DS:GL:BD 0.52472526 1 1 58523430 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0069;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58523444 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0037;AVGPOST=0.9967;RSQ=0.6862;ERATE=0.0004;THETA=0.0083;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58523477 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.982;LDAF=0.0391;AVGPOST=0.9990;RSQ=0.9916;ERATE=0.0003;THETA=0.0096;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 58523513 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5445;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58523600 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9226;ERATE=0.0003;THETA=0.0039;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58523671 rs33953505 T TCTGA 58502 PASS INDEL;BAVGPOST=0.973;BRSQ=0.948;LDAF=0.7266;AVGPOST=0.9547;RSQ=0.9072;ERATE=0.0125;THETA=0.0019;AC=1605;AN=2184 GT:DS:GL:BD 0.73489010 1 1 58523691 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6808;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58523802 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6494;ERATE=0.0003;THETA=0.0037;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58523833 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0062;AVGPOST=0.9985;RSQ=0.8908;ERATE=0.0003;THETA=0.0028;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58523880 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8881;ERATE=0.0004;THETA=0.0062;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58523985 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.7491;AVGPOST=0.9918;RSQ=0.9846;ERATE=0.0041;THETA=0.0039;AC=1636;AN=2184 GT:DS:GL:BD 0.74908423 1 1 58524031 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58524115 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5084;AVGPOST=0.9985;RSQ=0.9976;ERATE=0.0004;THETA=0.0006;AC=1110;AN=2184 GT:DS:GL:BD 0.50824177 1 1 58524134 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7166;AVGPOST=0.9992;RSQ=0.9985;ERATE=0.0003;THETA=0.0007;AC=1564;AN=2184 GT:DS:GL:BD 0.71611720 1 1 58524151 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58524280 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0093;AVGPOST=0.9996;RSQ=0.9814;ERATE=0.0003;THETA=0.0009;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 58524398 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9910;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58524505 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1833;AVGPOST=0.9989;RSQ=0.9972;ERATE=0.0003;THETA=0.0003;AC=401;AN=2184 GT:DS:GL:BD 0.18360806 0 1 58524535 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58524740 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0123;AVGPOST=0.9996;RSQ=0.9849;ERATE=0.0003;THETA=0.0001;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58524762 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2217;AVGPOST=0.9994;RSQ=0.9984;ERATE=0.0003;THETA=0.0006;AC=485;AN=2184 GT:DS:GL:BD 0.22206959 0 1 58524894 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0138;AVGPOST=0.9995;RSQ=0.9854;ERATE=0.0003;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58524991 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58525124 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9456;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58525214 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2217;AVGPOST=0.9991;RSQ=0.9977;ERATE=0.0004;THETA=0.0007;AC=485;AN=2184 GT:DS:GL:BD 0.22206959 0 1 58525225 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1856;AVGPOST=0.9994;RSQ=0.9983;ERATE=0.0003;THETA=0.0003;AC=406;AN=2184 GT:DS:GL:BD 0.18589744 0 1 58525246 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.815;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.8078;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58525381 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0221;AVGPOST=0.9996;RSQ=0.9915;ERATE=0.0003;THETA=0.0003;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 58525386 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9241;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58525636 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.839;LDAF=0.0080;AVGPOST=0.9978;RSQ=0.8869;ERATE=0.0004;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58525681 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6196;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58525702 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58525707 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0049;AVGPOST=0.9990;RSQ=0.9107;ERATE=0.0004;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58525747 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0032;AVGPOST=0.9992;RSQ=0.8979;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58525782 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2260;AVGPOST=0.9985;RSQ=0.9966;ERATE=0.0004;THETA=0.0006;AC=494;AN=2184 GT:DS:GL:BD 0.22619048 0 1 58525842 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2257;AVGPOST=0.9994;RSQ=0.9986;ERATE=0.0003;THETA=0.0006;AC=494;AN=2184 GT:DS:GL:BD 0.22619048 0 1 58525898 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8930;ERATE=0.0003;THETA=0.0001;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58525934 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7868;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58525962 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0124;AVGPOST=0.9999;RSQ=0.9946;ERATE=0.0003;THETA=0.0007;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58526016 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7127;AVGPOST=0.9990;RSQ=0.9983;ERATE=0.0003;THETA=0.0004;AC=1556;AN=2184 GT:DS:GL:BD 0.71245420 1 1 58526061 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9122;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58526106 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0404;AVGPOST=0.9994;RSQ=0.9937;ERATE=0.0003;THETA=0.0003;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 58526188 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0232;AVGPOST=0.9986;RSQ=0.9776;ERATE=0.0003;THETA=0.0005;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 58526230 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0017;AVGPOST=0.9986;RSQ=0.6739;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58526234 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.982;LDAF=0.0539;AVGPOST=0.9979;RSQ=0.9844;ERATE=0.0004;THETA=0.0005;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 58526235 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.2226;AVGPOST=0.9975;RSQ=0.9946;ERATE=0.0004;THETA=0.0002;AC=488;AN=2184 GT:DS:GL:BD 0.22344323 0 1 58526257 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.9375;AVGPOST=0.9975;RSQ=0.9840;ERATE=0.0007;THETA=0.0004;AC=2049;AN=2184 GT:DS:GL:BD 0.93818682 1 1 58526305 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9117;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58526346 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.976;LDAF=0.2181;AVGPOST=0.9941;RSQ=0.9875;ERATE=0.0003;THETA=0.0001;AC=480;AN=2184 GT:DS:GL:BD 0.21978022 0 1 58526347 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.972;LDAF=0.1757;AVGPOST=0.9932;RSQ=0.9830;ERATE=0.0003;THETA=0.0005;AC=386;AN=2184 GT:DS:GL:BD 0.17673993 0 1 58526382 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2103;AVGPOST=0.9985;RSQ=0.9960;ERATE=0.0004;THETA=0.0002;AC=459;AN=2184 GT:DS:GL:BD 0.21016483 0 1 58526416 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.2253;AVGPOST=0.9980;RSQ=0.9956;ERATE=0.0005;THETA=0.0003;AC=494;AN=2184 GT:DS:GL:BD 0.22619048 0 1 58526421 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.2257;AVGPOST=0.9992;RSQ=0.9980;ERATE=0.0004;THETA=0.0008;AC=494;AN=2184 GT:DS:GL:BD 0.22619048 0 1 58526532 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58526587 . CTGTT C 207 PASS INDEL;BAVGPOST=1.000;BRSQ=0.720;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5018;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58526746 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7118;AVGPOST=0.9990;RSQ=0.9982;ERATE=0.0005;THETA=0.0003;AC=1554;AN=2184 GT:DS:GL:BD 0.71153843 1 1 58526758 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1261;AVGPOST=0.9988;RSQ=0.9952;ERATE=0.0004;THETA=0.0006;AC=275;AN=2184 GT:DS:GL:BD 0.12591575 0 1 58526826 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0124;AVGPOST=0.9999;RSQ=0.9946;ERATE=0.0003;THETA=0.0001;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58526835 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.739;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6023;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58526836 . CA C 41 PASS INDEL;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4912;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58526854 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4958;AVGPOST=0.9982;RSQ=0.9971;ERATE=0.0005;THETA=0.0005;AC=1082;AN=2184 GT:DS:GL:BD 0.49542123 0 1 58526964 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3487;AVGPOST=0.9956;RSQ=0.9920;ERATE=0.0013;THETA=0.0005;AC=762;AN=2184 GT:DS:GL:BD 0.34890109 0 1 58527071 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5569;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58527085 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6530;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58527175 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6877;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58527438 rs11462890 G GT 23602 PASS INDEL;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2266;AVGPOST=0.9944;RSQ=0.9873;ERATE=0.0016;THETA=0.0002;AC=494;AN=2184 GT:DS:GL:BD 0.22619048 0 1 58527455 . AT A 2097 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0138;AVGPOST=0.9994;RSQ=0.9815;ERATE=0.0003;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58527593 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7227;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58527626 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58527669 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0359;AVGPOST=0.9994;RSQ=0.9933;ERATE=0.0003;THETA=0.0004;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 58527702 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0025;AVGPOST=0.9973;RSQ=0.6190;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58527828 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2263;AVGPOST=0.9988;RSQ=0.9970;ERATE=0.0004;THETA=0.0007;AC=495;AN=2184 GT:DS:GL:BD 0.22664835 0 1 58527840 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4880;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58527883 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58528009 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2263;AVGPOST=0.9991;RSQ=0.9977;ERATE=0.0004;THETA=0.0004;AC=495;AN=2184 GT:DS:GL:BD 0.22664835 0 1 58528023 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.667;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58528052 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.687;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7344;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58528160 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1831;AVGPOST=0.9993;RSQ=0.9980;ERATE=0.0004;THETA=0.0006;AC=401;AN=2184 GT:DS:GL:BD 0.18360806 0 1 58528310 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.9943;AVGPOST=0.9985;RSQ=0.9037;ERATE=0.0004;THETA=0.0003;AC=2172;AN=2184 GT:DS:GL:BD 0.99450547 1 1 58528357 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0220;AVGPOST=0.9997;RSQ=0.9943;ERATE=0.0003;THETA=0.0003;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 58528400 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9717;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58528428 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1012;AVGPOST=0.9994;RSQ=0.9977;ERATE=0.0003;THETA=0.0004;AC=222;AN=2184 GT:DS:GL:BD 0.10164835 0 1 58528504 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.9001;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58528536 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8313;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58528669 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0032;AVGPOST=0.9997;RSQ=0.9596;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58528686 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0399;AVGPOST=0.9974;RSQ=0.9793;ERATE=0.0003;THETA=0.0003;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 58528807 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0576;AVGPOST=0.9994;RSQ=0.9950;ERATE=0.0004;THETA=0.0005;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 58528820 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1859;AVGPOST=0.9987;RSQ=0.9967;ERATE=0.0006;THETA=0.0004;AC=407;AN=2184 GT:DS:GL:BD 0.18635531 0 1 58528921 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8080;ERATE=0.0003;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58528976 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2271;AVGPOST=0.9993;RSQ=0.9982;ERATE=0.0003;THETA=0.0004;AC=497;AN=2184 GT:DS:GL:BD 0.22756410 0 1 58528992 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0127;AVGPOST=0.9995;RSQ=0.9862;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 58528999 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0018;AVGPOST=0.9996;RSQ=0.9074;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58529029 . G GA 156 PASS INDEL;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0023;AVGPOST=0.9982;RSQ=0.6293;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58529041 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0405;AVGPOST=0.9992;RSQ=0.9935;ERATE=0.0003;THETA=0.0005;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 58529135 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.873;LDAF=0.0087;AVGPOST=0.9969;RSQ=0.8738;ERATE=0.0005;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58529165 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58529263 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0071;AVGPOST=0.9996;RSQ=0.9723;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58529288 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6894;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58529292 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0137;AVGPOST=0.9994;RSQ=0.9798;ERATE=0.0003;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58529349 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2272;AVGPOST=0.9992;RSQ=0.9981;ERATE=0.0003;THETA=0.0006;AC=497;AN=2184 GT:DS:GL:BD 0.22756410 0 1 58529478 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.687;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6732;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58529661 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.737;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58529849 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7306;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58529854 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9426;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58530024 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9991;RSQ=0.9543;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58530196 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.670;LDAF=0.0022;AVGPOST=0.9981;RSQ=0.6579;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58530214 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6413;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58530288 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6036;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58530300 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1845;AVGPOST=0.9990;RSQ=0.9972;ERATE=0.0004;THETA=0.0007;AC=403;AN=2184 GT:DS:GL:BD 0.18452381 0 1 58530356 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.943;LDAF=0.1819;AVGPOST=0.9950;RSQ=0.9872;ERATE=0.0007;THETA=0.0005;AC=399;AN=2184 GT:DS:GL:BD 0.18269230 0 1 58530388 rs80124035 TG T 1252 PASS INDEL;BAVGPOST=0.903;BRSQ=0.594;LDAF=0.1300;AVGPOST=0.9153;RSQ=0.7512;ERATE=0.0053;THETA=0.0005;AC=267;AN=2184 GT:DS:GL:BD 0.12225275 0 1 58530420 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.923;BRSQ=0.725;LDAF=0.1442;AVGPOST=0.9386;RSQ=0.8303;ERATE=0.0022;THETA=0.0008;AC=320;AN=2184 GT:DS:GL:BD 0.14652015 0 1 58530453 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.973;LDAF=0.2122;AVGPOST=0.9896;RSQ=0.9755;ERATE=0.0013;THETA=0.0004;AC=463;AN=2184 GT:DS:GL:BD 0.21199633 0 1 58530619 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.988;LDAF=0.4947;AVGPOST=0.9957;RSQ=0.9931;ERATE=0.0007;THETA=0.0004;AC=1079;AN=2184 GT:DS:GL:BD 0.49404761 0 1 58530626 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1873;AVGPOST=0.9982;RSQ=0.9948;ERATE=0.0004;THETA=0.0024;AC=410;AN=2184 GT:DS:GL:BD 0.18772894 0 1 58530646 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.569;LDAF=0.0032;AVGPOST=0.9968;RSQ=0.5804;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58530692 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58530781 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58530833 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1883;AVGPOST=0.9995;RSQ=0.9984;ERATE=0.0003;THETA=0.0003;AC=412;AN=2184 GT:DS:GL:BD 0.18864469 0 1 58530834 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5695;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58530951 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58531017 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6342;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58531111 . A AT 306 PASS INDEL;BAVGPOST=0.966;BRSQ=0.542;LDAF=0.0521;AVGPOST=0.9460;RSQ=0.6359;ERATE=0.0010;THETA=0.0004;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 58531117 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.590;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4946;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58531118 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.1278;AVGPOST=0.9980;RSQ=0.9926;ERATE=0.0003;THETA=0.0004;AC=280;AN=2184 GT:DS:GL:BD 0.12820514 0 1 58531128 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2095;AVGPOST=0.9980;RSQ=0.9948;ERATE=0.0004;THETA=0.0003;AC=457;AN=2184 GT:DS:GL:BD 0.20924908 0 1 58531206 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0586;AVGPOST=0.9997;RSQ=0.9975;ERATE=0.0003;THETA=0.0004;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 58531248 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7330;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58531254 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1884;AVGPOST=0.9994;RSQ=0.9983;ERATE=0.0004;THETA=0.0006;AC=412;AN=2184 GT:DS:GL:BD 0.18864469 0 1 58531318 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58531470 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8303;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58531541 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5800;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58531627 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2094;AVGPOST=0.9976;RSQ=0.9943;ERATE=0.0003;THETA=0.0002;AC=457;AN=2184 GT:DS:GL:BD 0.20924908 0 1 58531634 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1855;AVGPOST=0.9988;RSQ=0.9965;ERATE=0.0004;THETA=0.0002;AC=406;AN=2184 GT:DS:GL:BD 0.18589744 0 1 58531873 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.729;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58532015 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58532047 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7822;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58532228 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.951;LDAF=0.0306;AVGPOST=0.9960;RSQ=0.9438;ERATE=0.0003;THETA=0.0013;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 58532267 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2678;AVGPOST=0.9986;RSQ=0.9974;ERATE=0.0003;THETA=0.0004;AC=586;AN=2184 GT:DS:GL:BD 0.26831502 0 1 58532283 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0034;AVGPOST=0.9972;RSQ=0.6743;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58532322 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0138;AVGPOST=0.9995;RSQ=0.9858;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58532349 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0070;AVGPOST=0.9987;RSQ=0.9241;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58532360 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.9944;AVGPOST=0.9988;RSQ=0.9118;ERATE=0.0003;THETA=0.0002;AC=2172;AN=2184 GT:DS:GL:BD 0.99450547 1 1 58532367 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0441;AVGPOST=0.9971;RSQ=0.9795;ERATE=0.0004;THETA=0.0004;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 58532384 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.894;LDAF=0.0123;AVGPOST=0.9964;RSQ=0.8675;ERATE=0.0007;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58532469 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58532487 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.918;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9700;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58532552 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8560;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58532553 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4954;AVGPOST=0.9980;RSQ=0.9972;ERATE=0.0004;THETA=0.0003;AC=1080;AN=2184 GT:DS:GL:BD 0.49450549 0 1 58532623 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0407;AVGPOST=0.9985;RSQ=0.9866;ERATE=0.0003;THETA=0.0002;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 58532748 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58532755 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0586;AVGPOST=0.9998;RSQ=0.9985;ERATE=0.0003;THETA=0.0009;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 58532913 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0032;AVGPOST=0.9991;RSQ=0.8910;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58532953 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1844;AVGPOST=0.9993;RSQ=0.9983;ERATE=0.0003;THETA=0.0012;AC=404;AN=2184 GT:DS:GL:BD 0.18498169 0 1 58532994 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0593;AVGPOST=0.9994;RSQ=0.9952;ERATE=0.0003;THETA=0.0006;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 58532999 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8702;ERATE=0.0003;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58533013 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.921;LDAF=0.0030;AVGPOST=0.9980;RSQ=0.7299;ERATE=0.0018;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58533035 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58533063 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1847;AVGPOST=0.9997;RSQ=0.9991;ERATE=0.0003;THETA=0.0005;AC=404;AN=2184 GT:DS:GL:BD 0.18498169 0 1 58533104 . TCTC T 34 PASS INDEL;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4431;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58533111 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9865;ERATE=0.0005;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58533121 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0090;AVGPOST=0.9990;RSQ=0.9593;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58533313 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0406;AVGPOST=0.9986;RSQ=0.9870;ERATE=0.0005;THETA=0.0005;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 58533325 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.853;LDAF=0.0120;AVGPOST=0.9937;RSQ=0.8213;ERATE=0.0004;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58533331 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.781;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58533356 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0436;AVGPOST=0.9993;RSQ=0.9936;ERATE=0.0003;THETA=0.0006;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 58533415 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.970;LDAF=0.0137;AVGPOST=0.9989;RSQ=0.9662;ERATE=0.0003;THETA=0.0009;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58533433 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0020;AVGPOST=0.9982;RSQ=0.6338;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58533468 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58533476 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.716;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6923;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58533489 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7379;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58533632 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2268;AVGPOST=0.9973;RSQ=0.9944;ERATE=0.0004;THETA=0.0007;AC=495;AN=2184 GT:DS:GL:BD 0.22664835 0 1 58533632 . G GT 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58533633 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0004;AVGPOST=0.9995;RSQ=0.4621;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 58533766 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9792;ERATE=0.0003;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58533796 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0118;AVGPOST=0.9991;RSQ=0.9704;ERATE=0.0003;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 58533821 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0046;AVGPOST=1.0000;RSQ=0.9952;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58534064 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6798;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58534090 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6313;ERATE=0.0003;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58534164 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2330;AVGPOST=0.9959;RSQ=0.9916;ERATE=0.0004;THETA=0.0011;AC=511;AN=2184 GT:DS:GL:BD 0.23397435 0 1 58534170 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0068;AVGPOST=0.9984;RSQ=0.9132;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58534186 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.806;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7809;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58534254 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.866;LDAF=0.0063;AVGPOST=0.9954;RSQ=0.7468;ERATE=0.0004;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58534452 . AC A 2031 PASS INDEL;BAVGPOST=0.917;BRSQ=0.775;LDAF=0.2106;AVGPOST=0.9038;RSQ=0.7876;ERATE=0.0133;THETA=0.0007;AC=439;AN=2184 GT:DS:GL:BD 0.20100732 0 1 58534479 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.816;LDAF=0.0037;AVGPOST=0.9980;RSQ=0.7725;ERATE=0.0007;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58534581 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.982;LDAF=0.7669;AVGPOST=0.9892;RSQ=0.9768;ERATE=0.0004;THETA=0.0007;AC=1674;AN=2184 GT:DS:GL:BD 0.76648355 1 1 58534666 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58534931 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58534940 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0021;AVGPOST=0.9978;RSQ=0.5856;ERATE=0.0003;THETA=0.0024;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58535011 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7882;ERATE=0.0003;THETA=0.0041;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58535016 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58535049 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0213;AVGPOST=0.9977;RSQ=0.9545;ERATE=0.0003;THETA=0.0010;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 58535067 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0400;AVGPOST=0.9987;RSQ=0.9871;ERATE=0.0003;THETA=0.0016;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 58535140 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2270;AVGPOST=0.9920;RSQ=0.9851;ERATE=0.0006;THETA=0.0043;AC=496;AN=2184 GT:DS:GL:BD 0.22710623 0 1 58535181 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.965;LDAF=0.0085;AVGPOST=0.9989;RSQ=0.9606;ERATE=0.0003;THETA=0.0195;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 58535260 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0004;THETA=0.0054;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58535309 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9382;ERATE=0.0003;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58535372 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.718;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8520;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58535456 . CTG C 927 PASS INDEL;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0064;AVGPOST=0.9980;RSQ=0.8877;ERATE=0.0004;THETA=0.0053;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58535543 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0587;AVGPOST=0.9982;RSQ=0.9890;ERATE=0.0003;THETA=0.0068;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 58535595 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7735;ERATE=0.0003;THETA=0.0108;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58535621 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0102;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58535657 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0245;AVGPOST=0.9982;RSQ=0.9742;ERATE=0.0003;THETA=0.0117;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 58535710 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0003;THETA=0.0153;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58535915 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6377;ERATE=0.0003;THETA=0.0182;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58536026 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0333;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58536036 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.755;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9020;ERATE=0.0003;THETA=0.0093;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58536055 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8974;ERATE=0.0003;THETA=0.0179;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58536065 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0260;AVGPOST=0.9987;RSQ=0.9829;ERATE=0.0003;THETA=0.0094;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 58536086 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0238;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58536095 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8054;ERATE=0.0003;THETA=0.0412;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58536257 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0104;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58536329 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0179;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58536398 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7773;ERATE=0.0003;THETA=0.0125;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58536414 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0168;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58536417 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.922;LDAF=0.7937;AVGPOST=0.9628;RSQ=0.9165;ERATE=0.0287;THETA=0.0128;AC=1749;AN=2184 GT:DS:GL:BD 0.80082417 1 1 58536500 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0305;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58536602 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0039;AVGPOST=0.9988;RSQ=0.8851;ERATE=0.0003;THETA=0.0074;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58536614 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0192;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58536721 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.928;LDAF=0.0184;AVGPOST=0.9959;RSQ=0.9054;ERATE=0.0014;THETA=0.0168;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 58536789 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9077;ERATE=0.0003;THETA=0.0046;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58536831 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5811;ERATE=0.0003;THETA=0.0222;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58537101 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0025;AVGPOST=0.9980;RSQ=0.6990;ERATE=0.0006;THETA=0.0155;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58537102 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.975;LDAF=0.0397;AVGPOST=0.9970;RSQ=0.9694;ERATE=0.0003;THETA=0.0004;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 58537162 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0259;AVGPOST=0.9995;RSQ=0.9915;ERATE=0.0003;THETA=0.0057;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 58537361 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.989;LDAF=0.5808;AVGPOST=0.9844;RSQ=0.9770;ERATE=0.0005;THETA=0.0030;AC=1265;AN=2184 GT:DS:GL:BD 0.57921243 1 1 58537508 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58537551 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.653;LDAF=0.0023;AVGPOST=0.9984;RSQ=0.7388;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58537667 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.698;LDAF=0.0023;AVGPOST=0.9987;RSQ=0.7609;ERATE=0.0004;THETA=0.0029;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58537752 . T TG 22 PASS INDEL;BAVGPOST=0.971;BRSQ=0.293;LDAF=0.0548;AVGPOST=0.9255;RSQ=0.4267;ERATE=0.0061;THETA=0.0021;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 58537758 . G GC 185 PASS INDEL;BAVGPOST=0.985;BRSQ=0.199;LDAF=0.0291;AVGPOST=0.9490;RSQ=0.2947;ERATE=0.0037;THETA=0.0086;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58537765 . G GT 723 PASS INDEL;BAVGPOST=0.960;BRSQ=0.407;LDAF=0.0562;AVGPOST=0.9395;RSQ=0.5771;ERATE=0.0014;THETA=0.0036;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 58537908 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0307;AVGPOST=0.9995;RSQ=0.9927;ERATE=0.0004;THETA=0.0011;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 58537919 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.9141;AVGPOST=0.9954;RSQ=0.9779;ERATE=0.0004;THETA=0.0012;AC=1997;AN=2184 GT:DS:GL:BD 0.91437727 1 1 58537960 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58537967 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7968;ERATE=0.0003;THETA=0.0017;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58538089 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58538210 . CT C 44 PASS INDEL;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0018;AVGPOST=0.9975;RSQ=0.5125;ERATE=0.0003;THETA=0.0020;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58538275 . C CA 7013 PASS INDEL;BAVGPOST=0.996;BRSQ=0.979;LDAF=0.0707;AVGPOST=0.9975;RSQ=0.9850;ERATE=0.0004;THETA=0.0005;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 58538277 . A AG 630 PASS INDEL;BAVGPOST=0.993;BRSQ=0.952;LDAF=0.0692;AVGPOST=0.9958;RSQ=0.9747;ERATE=0.0008;THETA=0.0011;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 58538655 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.981;LDAF=0.2207;AVGPOST=0.9848;RSQ=0.9729;ERATE=0.0005;THETA=0.0013;AC=478;AN=2184 GT:DS:GL:BD 0.21886447 0 1 58538684 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5567;ERATE=0.0003;THETA=0.0039;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58538738 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5645;AVGPOST=0.9973;RSQ=0.9959;ERATE=0.0004;THETA=0.0005;AC=1234;AN=2184 GT:DS:GL:BD 0.56501830 1 1 58538883 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=0.9993;RSQ=0.5365;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58538927 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2525;AVGPOST=0.9985;RSQ=0.9968;ERATE=0.0003;THETA=0.0003;AC=551;AN=2184 GT:DS:GL:BD 0.25228938 0 1 58538930 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0143;AVGPOST=0.9985;RSQ=0.9667;ERATE=0.0003;THETA=0.0008;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58538941 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0257;AVGPOST=0.9998;RSQ=0.9961;ERATE=0.0003;THETA=0.0004;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 58538961 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58538964 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0256;AVGPOST=1.0000;RSQ=0.9992;ERATE=0.0003;THETA=0.0005;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 58538970 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58539030 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0044;AVGPOST=0.9994;RSQ=0.9383;ERATE=0.0005;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58539095 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5386;AVGPOST=0.9977;RSQ=0.9962;ERATE=0.0005;THETA=0.0004;AC=1177;AN=2184 GT:DS:GL:BD 0.53891939 1 1 58539121 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6141;AVGPOST=0.9989;RSQ=0.9980;ERATE=0.0003;THETA=0.0007;AC=1342;AN=2184 GT:DS:GL:BD 0.61446887 1 1 58539207 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0029;AVGPOST=0.9988;RSQ=0.8578;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58539238 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8874;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58539267 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0256;AVGPOST=0.9999;RSQ=0.9984;ERATE=0.0003;THETA=0.0005;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 58539273 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8111;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58539277 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0755;AVGPOST=0.9997;RSQ=0.9983;ERATE=0.0003;THETA=0.0001;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 58539350 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0764;AVGPOST=0.9996;RSQ=0.9975;ERATE=0.0003;THETA=0.0005;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 58539378 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0077;AVGPOST=0.9991;RSQ=0.9471;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58539491 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0497;AVGPOST=0.9995;RSQ=0.9966;ERATE=0.0003;THETA=0.0005;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 58539581 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.762;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7875;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58539636 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8523;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58539646 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5421;AVGPOST=0.9970;RSQ=0.9952;ERATE=0.0007;THETA=0.0001;AC=1183;AN=2184 GT:DS:GL:BD 0.54166669 1 1 58540217 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.780;BRSQ=0.336;LDAF=0.2642;AVGPOST=0.7192;RSQ=0.3926;ERATE=0.0330;THETA=0.0006;AC=378;AN=2184 GT:DS:GL:BD 0.17307693 0 1 58540252 . AT A 18 PASS INDEL;BAVGPOST=0.985;BRSQ=0.289;LDAF=0.0261;AVGPOST=0.9611;RSQ=0.4100;ERATE=0.0018;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 58540258 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.280;LDAF=0.0222;AVGPOST=0.9650;RSQ=0.3610;ERATE=0.0024;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58540337 . CCAA C 76 PASS INDEL;BAVGPOST=0.999;BRSQ=0.634;LDAF=0.0029;AVGPOST=0.9973;RSQ=0.6019;ERATE=0.0006;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58540484 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0759;AVGPOST=0.9999;RSQ=0.9992;ERATE=0.0003;THETA=0.0002;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 58540553 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0032;AVGPOST=0.9972;RSQ=0.6646;ERATE=0.0004;THETA=0.0020;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58540557 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0104;AVGPOST=0.9988;RSQ=0.9566;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58540582 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0756;AVGPOST=0.9993;RSQ=0.9959;ERATE=0.0005;THETA=0.0007;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 58540804 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6159;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58540818 . CAG C 87 PASS INDEL;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5002;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58540822 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5729;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58540836 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5384;AVGPOST=0.9979;RSQ=0.9964;ERATE=0.0005;THETA=0.0003;AC=1176;AN=2184 GT:DS:GL:BD 0.53846157 1 1 58540874 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5584;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58541112 . T TG 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58541222 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0754;AVGPOST=0.9999;RSQ=0.9992;ERATE=0.0003;THETA=0.0004;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 58541223 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58541267 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.7351;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58541274 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.845;LDAF=0.0055;AVGPOST=0.9996;RSQ=0.9699;ERATE=0.0003;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58541339 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9236;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58541356 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0252;AVGPOST=0.9999;RSQ=0.9984;ERATE=0.0003;THETA=0.0004;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 58541409 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8936;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58541425 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.5396;AVGPOST=0.9961;RSQ=0.9937;ERATE=0.0012;THETA=0.0003;AC=1178;AN=2184 GT:DS:GL:BD 0.53937727 1 1 58541484 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0255;AVGPOST=0.9998;RSQ=0.9969;ERATE=0.0003;THETA=0.0005;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 58541550 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5834;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58541613 . T TCTCA 3667 PASS INDEL;BAVGPOST=0.997;BRSQ=0.865;LDAF=0.0120;AVGPOST=0.9963;RSQ=0.8798;ERATE=0.0004;THETA=0.0002;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 58541885 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7003;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58542038 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0344;AVGPOST=0.9995;RSQ=0.9951;ERATE=0.0003;THETA=0.0004;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 58542136 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.944;LDAF=0.0157;AVGPOST=0.9961;RSQ=0.9076;ERATE=0.0003;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 58542251 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.926;LDAF=0.0478;AVGPOST=0.9963;RSQ=0.9707;ERATE=0.0003;THETA=0.0002;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 58542252 . C CT 1249 PASS INDEL;BAVGPOST=0.993;BRSQ=0.902;LDAF=0.0428;AVGPOST=0.9922;RSQ=0.9299;ERATE=0.0005;THETA=0.0012;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 58542314 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.749;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58542429 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58542495 . T TA 1240 PASS INDEL;BAVGPOST=0.997;BRSQ=0.936;LDAF=0.0252;AVGPOST=0.9984;RSQ=0.9746;ERATE=0.0004;THETA=0.0004;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 58542496 . A AATAT 7036 PASS INDEL;BAVGPOST=0.997;BRSQ=0.935;LDAF=0.0250;AVGPOST=0.9989;RSQ=0.9838;ERATE=0.0003;THETA=0.0008;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 58542498 rs72388953 ACTG A 2755 PASS INDEL;BAVGPOST=0.991;BRSQ=0.816;LDAF=0.0542;AVGPOST=0.9501;RSQ=0.6188;ERATE=0.0037;THETA=0.0003;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 58542581 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58542629 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58542695 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7477;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58542770 . T TAAG 69 PASS INDEL;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4924;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58542805 . TA T 516 PASS INDEL;BAVGPOST=0.993;BRSQ=0.675;LDAF=0.0161;AVGPOST=0.9832;RSQ=0.5850;ERATE=0.0047;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58542867 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0503;AVGPOST=0.9999;RSQ=0.9987;ERATE=0.0003;THETA=0.0005;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 58543002 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0182;AVGPOST=0.9993;RSQ=0.9807;ERATE=0.0003;THETA=0.0005;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 58543345 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58543416 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58543436 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0785;AVGPOST=0.9979;RSQ=0.9896;ERATE=0.0005;THETA=0.0007;AC=170;AN=2184 GT:DS:GL:BD 0.07783883 0 1 58543562 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0503;AVGPOST=0.9998;RSQ=0.9979;ERATE=0.0003;THETA=0.0003;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 58543637 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7568;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58543658 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0030;AVGPOST=0.9980;RSQ=0.7462;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58543810 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8496;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58544295 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.5687;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58544331 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6445;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58544439 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58544489 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8086;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58544619 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0759;AVGPOST=0.9999;RSQ=0.9994;ERATE=0.0003;THETA=0.0004;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 58544681 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7364;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58544752 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5966;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58544773 . C CA 75 PASS INDEL;BAVGPOST=0.999;BRSQ=0.707;LDAF=0.0008;AVGPOST=0.9989;RSQ=0.4319;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58544805 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5385;AVGPOST=0.9987;RSQ=0.9979;ERATE=0.0004;THETA=0.0008;AC=1176;AN=2184 GT:DS:GL:BD 0.53846157 1 1 58544830 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8366;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58544920 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9127;AVGPOST=0.9987;RSQ=0.9936;ERATE=0.0004;THETA=0.0005;AC=1995;AN=2184 GT:DS:GL:BD 0.91346157 1 1 58544930 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0040;AVGPOST=0.9978;RSQ=0.8477;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58544999 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0755;AVGPOST=0.9995;RSQ=0.9974;ERATE=0.0003;THETA=0.0004;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 58545225 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.356;LDAF=0.0063;AVGPOST=0.9923;RSQ=0.4894;ERATE=0.0011;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58545255 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.942;LDAF=0.2509;AVGPOST=0.9939;RSQ=0.9866;ERATE=0.0005;THETA=0.0003;AC=551;AN=2184 GT:DS:GL:BD 0.25228938 0 1 58545263 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.713;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6152;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58545306 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0096;AVGPOST=0.9996;RSQ=0.9824;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58545436 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5417;AVGPOST=0.9952;RSQ=0.9925;ERATE=0.0006;THETA=0.0005;AC=1185;AN=2184 GT:DS:GL:BD 0.54258239 1 1 58545544 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7418;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58545640 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9149;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58545714 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0163;AVGPOST=0.9993;RSQ=0.9876;ERATE=0.0003;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 58545740 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58545800 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.5763;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58545976 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0369;AVGPOST=0.9994;RSQ=0.9929;ERATE=0.0003;THETA=0.0004;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 58546023 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58546084 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.756;LDAF=0.0026;AVGPOST=0.9980;RSQ=0.7011;ERATE=0.0012;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58546248 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.862;LDAF=0.0108;AVGPOST=0.9975;RSQ=0.9148;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 58546295 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6910;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58546328 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2423;AVGPOST=0.9976;RSQ=0.9953;ERATE=0.0003;THETA=0.0008;AC=528;AN=2184 GT:DS:GL:BD 0.24175824 0 1 58546415 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.830;LDAF=0.0019;AVGPOST=0.9992;RSQ=0.8360;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58546501 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0252;AVGPOST=0.9999;RSQ=0.9976;ERATE=0.0003;THETA=0.0008;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 58546624 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0769;AVGPOST=0.9985;RSQ=0.9925;ERATE=0.0003;THETA=0.0004;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 58546726 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0261;AVGPOST=0.9998;RSQ=0.9961;ERATE=0.0003;THETA=0.0003;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 58546966 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0032;AVGPOST=0.9997;RSQ=0.9691;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 58546971 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0345;AVGPOST=0.9995;RSQ=0.9939;ERATE=0.0003;THETA=0.0008;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 58547039 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0497;AVGPOST=0.9981;RSQ=0.9866;ERATE=0.0004;THETA=0.0003;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 58547066 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.8154;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58547084 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.7212;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58547118 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0117;AVGPOST=0.9994;RSQ=0.9767;ERATE=0.0003;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 58547163 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58547169 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7670;ERATE=0.0004;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58547209 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0095;AVGPOST=0.9995;RSQ=0.9804;ERATE=0.0003;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58547295 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8338;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58547323 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0041;AVGPOST=0.9998;RSQ=0.9747;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 58547336 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.626;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.6045;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58547510 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.958;LDAF=0.0173;AVGPOST=0.9980;RSQ=0.9559;ERATE=0.0003;THETA=0.0030;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 58547634 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7739;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58547745 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.981;LDAF=0.0552;AVGPOST=0.9984;RSQ=0.9881;ERATE=0.0003;THETA=0.0076;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 58547832 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7344;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58547881 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=0.9995;RSQ=0.9629;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58548093 . AAT A 12193 PASS INDEL;BAVGPOST=0.989;BRSQ=0.982;LDAF=0.3360;AVGPOST=0.9631;RSQ=0.9395;ERATE=0.0074;THETA=0.0018;AC=734;AN=2184 GT:DS:GL:BD 0.33608058 0 1 58548178 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0070;AVGPOST=0.9994;RSQ=0.9589;ERATE=0.0003;THETA=0.0013;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 58548180 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3104;AVGPOST=0.9981;RSQ=0.9963;ERATE=0.0005;THETA=0.0004;AC=678;AN=2184 GT:DS:GL:BD 0.31043956 0 1 58548267 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.977;LDAF=0.2174;AVGPOST=0.9938;RSQ=0.9867;ERATE=0.0008;THETA=0.0009;AC=475;AN=2184 GT:DS:GL:BD 0.21749084 0 1 58548443 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0022;AVGPOST=0.9979;RSQ=0.6633;ERATE=0.0007;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58548477 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.773;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7682;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58548506 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0447;AVGPOST=0.9963;RSQ=0.9703;ERATE=0.0007;THETA=0.0004;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 58548969 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.694;LDAF=0.0019;AVGPOST=0.9992;RSQ=0.8279;ERATE=0.0004;THETA=0.0026;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58548998 . AC A 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5492;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58549094 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2806;AVGPOST=0.9993;RSQ=0.9986;ERATE=0.0003;THETA=0.0005;AC=613;AN=2184 GT:DS:GL:BD 0.28067765 0 1 58549201 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58549246 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2712;AVGPOST=0.9980;RSQ=0.9958;ERATE=0.0005;THETA=0.0008;AC=591;AN=2184 GT:DS:GL:BD 0.27060440 0 1 58549363 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.880;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5928;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58549370 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0288;AVGPOST=0.9997;RSQ=0.9958;ERATE=0.0003;THETA=0.0005;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 58549457 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6426;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58549598 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5016;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58549881 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0097;AVGPOST=0.9995;RSQ=0.9788;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58549940 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0060;AVGPOST=1.0000;RSQ=0.9963;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58549997 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58550008 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.871;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7918;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58550249 . TCA T 145 PASS INDEL;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0052;AVGPOST=0.9922;RSQ=0.4523;ERATE=0.0005;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58550331 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8869;ERATE=0.0003;THETA=0.0035;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58550483 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.877;LDAF=0.0579;AVGPOST=0.9802;RSQ=0.8864;ERATE=0.0007;THETA=0.0003;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 58550698 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58550757 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3116;AVGPOST=0.9989;RSQ=0.9978;ERATE=0.0004;THETA=0.0005;AC=681;AN=2184 GT:DS:GL:BD 0.31181318 0 1 58550815 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.736;LDAF=0.0054;AVGPOST=0.9985;RSQ=0.9036;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 58550840 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0325;AVGPOST=0.9998;RSQ=0.9977;ERATE=0.0003;THETA=0.0009;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 58550894 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0107;AVGPOST=0.9995;RSQ=0.9785;ERATE=0.0003;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58550991 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6552;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58551111 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0020;AVGPOST=0.9981;RSQ=0.5681;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58551127 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0327;AVGPOST=0.9996;RSQ=0.9948;ERATE=0.0004;THETA=0.0002;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 58551367 . CT C 118 PASS INDEL;BAVGPOST=0.981;BRSQ=0.551;LDAF=0.0348;AVGPOST=0.9751;RSQ=0.6852;ERATE=0.0011;THETA=0.0005;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 58551371 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.936;LDAF=0.0287;AVGPOST=0.9899;RSQ=0.8604;ERATE=0.0008;THETA=0.0008;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 58551371 rs113315429 T TA 351 PASS INDEL;BAVGPOST=0.981;BRSQ=0.592;LDAF=0.0357;AVGPOST=0.9579;RSQ=0.5174;ERATE=0.0062;THETA=0.0005;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 58551424 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.4102;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58551434 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0267;AVGPOST=0.9995;RSQ=0.9948;ERATE=0.0003;THETA=0.0003;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 58551438 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0060;AVGPOST=0.9995;RSQ=0.9660;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58551602 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.719;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.4844;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58551631 . T TC 532 PASS INDEL;BAVGPOST=0.994;BRSQ=0.930;LDAF=0.0419;AVGPOST=0.9884;RSQ=0.8951;ERATE=0.0020;THETA=0.0003;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 58551725 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.764;BRSQ=0.355;LDAF=0.2135;AVGPOST=0.8181;RSQ=0.5970;ERATE=0.0103;THETA=0.0003;AC=422;AN=2184 GT:DS:GL:BD 0.19322345 0 1 58551854 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.510;LDAF=0.0040;AVGPOST=0.9937;RSQ=0.2977;ERATE=0.0008;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58551887 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.776;LDAF=0.0314;AVGPOST=0.9846;RSQ=0.8226;ERATE=0.0011;THETA=0.0009;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 58551955 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.0468;AVGPOST=0.9979;RSQ=0.9829;ERATE=0.0003;THETA=0.0004;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 58552112 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3412;AVGPOST=0.9989;RSQ=0.9979;ERATE=0.0003;THETA=0.0009;AC=745;AN=2184 GT:DS:GL:BD 0.34111720 0 1 58552229 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8653;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58552417 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3121;AVGPOST=0.9985;RSQ=0.9972;ERATE=0.0003;THETA=0.0009;AC=681;AN=2184 GT:DS:GL:BD 0.31181318 0 1 58552539 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9855;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58552619 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7363;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58552641 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.727;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58552760 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58552885 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8567;ERATE=0.0007;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58553099 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8596;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58553343 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58553367 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0059;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58553404 . AG A 2669 PASS INDEL;BAVGPOST=0.929;BRSQ=0.857;LDAF=0.2728;AVGPOST=0.9154;RSQ=0.8668;ERATE=0.0077;THETA=0.0004;AC=609;AN=2184 GT:DS:GL:BD 0.27884614 0 1 58553405 rs71702541 GA G 31626 PASS INDEL;BAVGPOST=0.991;BRSQ=0.984;LDAF=0.3556;AVGPOST=0.9951;RSQ=0.9930;ERATE=0.0005;THETA=0.0005;AC=775;AN=2184 GT:DS:GL:BD 0.35485348 0 1 58553409 . AG A 2468 PASS INDEL;BAVGPOST=0.936;BRSQ=0.872;LDAF=0.2679;AVGPOST=0.9157;RSQ=0.8695;ERATE=0.0043;THETA=0.0012;AC=603;AN=2184 GT:DS:GL:BD 0.27609891 0 1 58553421 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0320;AVGPOST=1.0000;RSQ=0.9994;ERATE=0.0003;THETA=0.0006;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 58553462 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0028;AVGPOST=1.0000;RSQ=0.9921;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58553463 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7183;ERATE=0.0003;THETA=0.0062;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58553488 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8063;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58553594 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0141;AVGPOST=0.9992;RSQ=0.9791;ERATE=0.0003;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58553797 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.942;LDAF=0.0147;AVGPOST=0.9999;RSQ=0.9973;ERATE=0.0003;THETA=0.0005;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 58553974 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2609;AVGPOST=0.9984;RSQ=0.9968;ERATE=0.0006;THETA=0.0004;AC=569;AN=2184 GT:DS:GL:BD 0.26053113 0 1 58553977 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0129;AVGPOST=0.9994;RSQ=0.9821;ERATE=0.0003;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 58554247 . G GA 438 PASS INDEL;BAVGPOST=0.997;BRSQ=0.764;LDAF=0.0095;AVGPOST=0.9940;RSQ=0.7324;ERATE=0.0004;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 58554266 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.7780;ERATE=0.0007;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58554268 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0138;AVGPOST=0.9996;RSQ=0.9879;ERATE=0.0003;THETA=0.0007;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58554274 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0136;AVGPOST=0.9998;RSQ=0.9933;ERATE=0.0003;THETA=0.0014;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58554334 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58554409 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0138;AVGPOST=0.9998;RSQ=0.9940;ERATE=0.0003;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58554500 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9618;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58554578 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0137;AVGPOST=1.0000;RSQ=0.9985;ERATE=0.0003;THETA=0.0007;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58554611 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0137;AVGPOST=1.0000;RSQ=0.9985;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58554674 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58554750 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0098;AVGPOST=0.9991;RSQ=0.9642;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 58554775 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2819;AVGPOST=0.9987;RSQ=0.9973;ERATE=0.0005;THETA=0.0004;AC=615;AN=2184 GT:DS:GL:BD 0.28159341 0 1 58554817 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6277;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58554910 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58554962 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.799;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.9085;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58554963 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7444;ERATE=0.0017;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58555004 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5634;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58555017 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0324;AVGPOST=0.9998;RSQ=0.9972;ERATE=0.0003;THETA=0.0009;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 58555026 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6841;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58555031 . A AC 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4543;ERATE=0.0005;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58555038 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.632;LDAF=0.0096;AVGPOST=0.9894;RSQ=0.5894;ERATE=0.0013;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58555039 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.3554;AVGPOST=0.9979;RSQ=0.9968;ERATE=0.0005;THETA=0.0002;AC=777;AN=2184 GT:DS:GL:BD 0.35576922 0 1 58555055 . CTGT C 23 PASS INDEL;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4876;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58555124 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3228;AVGPOST=0.9969;RSQ=0.9954;ERATE=0.0003;THETA=0.0007;AC=707;AN=2184 GT:DS:GL:BD 0.32371795 0 1 58555210 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5940;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58555240 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6616;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58555361 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.638;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5277;ERATE=0.0004;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58555401 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0284;AVGPOST=0.9998;RSQ=0.9971;ERATE=0.0003;THETA=0.0004;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 58555499 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4832;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58555539 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0273;AVGPOST=0.9978;RSQ=0.9704;ERATE=0.0004;THETA=0.0006;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 58555575 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0104;AVGPOST=0.9979;RSQ=0.9278;ERATE=0.0004;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 58555645 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58555740 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6362;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58555774 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.995;LDAF=0.3119;AVGPOST=0.9984;RSQ=0.9972;ERATE=0.0003;THETA=0.0005;AC=682;AN=2184 GT:DS:GL:BD 0.31227106 0 1 58555804 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0132;AVGPOST=0.9980;RSQ=0.9520;ERATE=0.0003;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 58555805 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0133;AVGPOST=0.9979;RSQ=0.9461;ERATE=0.0003;THETA=0.0011;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 58555845 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6856;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58555853 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0110;AVGPOST=0.9999;RSQ=0.9963;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58555862 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7440;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58555886 . A AG 1279 PASS INDEL;BAVGPOST=0.923;BRSQ=0.790;LDAF=0.1835;AVGPOST=0.9115;RSQ=0.8076;ERATE=0.0059;THETA=0.0004;AC=391;AN=2184 GT:DS:GL:BD 0.17902930 0 1 58555888 rs80340162 G GA 23563 PASS INDEL;BAVGPOST=0.984;BRSQ=0.967;LDAF=0.2988;AVGPOST=0.9915;RSQ=0.9843;ERATE=0.0023;THETA=0.0002;AC=653;AN=2184 GT:DS:GL:BD 0.29899266 0 1 58555892 . AAAT A 230 PASS INDEL;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7183;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58555893 . A AC 1044 PASS INDEL;BAVGPOST=0.922;BRSQ=0.780;LDAF=0.1834;AVGPOST=0.9228;RSQ=0.8250;ERATE=0.0017;THETA=0.0008;AC=400;AN=2184 GT:DS:GL:BD 0.18315019 0 1 58555942 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.792;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8721;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58556006 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0119;AVGPOST=0.9998;RSQ=0.9931;ERATE=0.0003;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 58556051 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58556069 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58556079 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.800;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.9085;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58556145 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3225;AVGPOST=0.9970;RSQ=0.9952;ERATE=0.0011;THETA=0.0002;AC=704;AN=2184 GT:DS:GL:BD 0.32234433 0 1 58556159 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0110;AVGPOST=0.9999;RSQ=0.9963;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58556164 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0111;AVGPOST=0.9998;RSQ=0.9926;ERATE=0.0003;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58556198 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0111;AVGPOST=0.9998;RSQ=0.9926;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58556210 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0110;AVGPOST=0.9999;RSQ=0.9963;ERATE=0.0003;THETA=0.0011;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58556338 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58556427 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0477;AVGPOST=0.9967;RSQ=0.9757;ERATE=0.0003;THETA=0.0004;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 58556436 . CAG C 412 PASS INDEL;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.6654;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58556449 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.8667;ERATE=0.0003;THETA=0.0025;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58556507 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7917;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58556522 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0066;AVGPOST=0.9996;RSQ=0.9740;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 58556598 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3125;AVGPOST=0.9989;RSQ=0.9979;ERATE=0.0003;THETA=0.0006;AC=683;AN=2184 GT:DS:GL:BD 0.31272894 0 1 58556619 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9491;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58556667 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0034;AVGPOST=0.9988;RSQ=0.8698;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 58556696 . A AC 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4989;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58556710 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0281;AVGPOST=0.9993;RSQ=0.9864;ERATE=0.0003;THETA=0.0004;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 58556721 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5631;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58556809 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58556818 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0111;AVGPOST=0.9998;RSQ=0.9908;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58556832 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.8990;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58556994 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58557046 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9207;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 58557084 . CAT C 139 PASS INDEL;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0025;AVGPOST=0.9974;RSQ=0.6157;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 58557092 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.9143;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 58557103 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9489;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 58557216 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0136;AVGPOST=0.9988;RSQ=0.9662;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 58557240 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.5528;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58557276 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0284;AVGPOST=1.0000;RSQ=0.9993;ERATE=0.0003;THETA=0.0004;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 58557483 . CAAAACT C 324 PASS INDEL;BAVGPOST=0.999;BRSQ=0.713;LDAF=0.0026;AVGPOST=0.9966;RSQ=0.4602;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58557528 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.878;LDAF=0.0064;AVGPOST=0.9989;RSQ=0.9191;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 58557592 . CTT C 944 PASS INDEL;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0082;AVGPOST=0.9982;RSQ=0.9305;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 58557597 . AG A 785 PASS INDEL;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0089;AVGPOST=0.9970;RSQ=0.8906;ERATE=0.0003;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 58557642 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0111;AVGPOST=0.9997;RSQ=0.9891;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 58557666 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.6204;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 58557949 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.833;LDAF=0.0058;AVGPOST=0.9968;RSQ=0.7728;ERATE=0.0006;THETA=0.0027;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 58558055 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.822;LDAF=0.0066;AVGPOST=0.9962;RSQ=0.7624;ERATE=0.0004;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 58558086 . AT A 88 PASS INDEL;BAVGPOST=0.999;BRSQ=0.636;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 58558157 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5883;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0