1092 10000 1 62269190 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.637;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6530;ERATE=0.0003;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62269197 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9884;AVGPOST=0.9990;RSQ=0.9668;ERATE=0.0004;THETA=0.0004;AC=2159;AN=2184 GT:DS:GL:BD 0.98855311 1 1 62269224 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2787;AVGPOST=0.9961;RSQ=0.9928;ERATE=0.0006;THETA=0.0002;AC=607;AN=2184 GT:DS:GL:BD 0.27793041 0 1 62269308 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6392;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62269417 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.732;LDAF=0.0020;AVGPOST=0.9982;RSQ=0.6301;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62269447 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62269496 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.727;LDAF=0.0007;AVGPOST=0.9991;RSQ=0.4395;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62269500 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7727;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62269571 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6847;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62269612 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0056;AVGPOST=0.9989;RSQ=0.9195;ERATE=0.0004;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62269656 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.956;LDAF=0.1075;AVGPOST=0.9942;RSQ=0.9747;ERATE=0.0005;THETA=0.0002;AC=234;AN=2184 GT:DS:GL:BD 0.10714286 0 1 62269661 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7821;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62269775 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0196;AVGPOST=0.9987;RSQ=0.9773;ERATE=0.0003;THETA=0.0006;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 62270080 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7425;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62270123 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7163;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62270143 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.876;LDAF=0.0146;AVGPOST=0.9964;RSQ=0.8955;ERATE=0.0004;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62270315 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62270355 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4949;AVGPOST=0.9954;RSQ=0.9929;ERATE=0.0007;THETA=0.0004;AC=1084;AN=2184 GT:DS:GL:BD 0.49633700 0 1 62270380 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0636;AVGPOST=0.9979;RSQ=0.9854;ERATE=0.0004;THETA=0.0004;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 62270381 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0052;AVGPOST=0.9982;RSQ=0.8802;ERATE=0.0011;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62270403 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2460;AVGPOST=0.9982;RSQ=0.9963;ERATE=0.0004;THETA=0.0002;AC=536;AN=2184 GT:DS:GL:BD 0.24542125 0 1 62270443 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7001;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62270494 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8498;AVGPOST=0.9978;RSQ=0.9936;ERATE=0.0004;THETA=0.0006;AC=1857;AN=2184 GT:DS:GL:BD 0.85027474 1 1 62270757 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62270782 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62270799 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0078;AVGPOST=0.9989;RSQ=0.9528;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62270820 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0207;AVGPOST=0.9996;RSQ=0.9912;ERATE=0.0003;THETA=0.0003;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 62271097 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62271103 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0065;AVGPOST=0.9997;RSQ=0.9833;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62271224 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0036;AVGPOST=0.9999;RSQ=0.9817;ERATE=0.0006;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62271226 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0008;AVGPOST=0.9999;RSQ=0.9255;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62271276 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62271343 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0093;AVGPOST=0.9998;RSQ=0.9914;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62271344 . AT A 28 PASS INDEL;BAVGPOST=0.998;BRSQ=0.605;LDAF=0.0051;AVGPOST=0.9939;RSQ=0.5184;ERATE=0.0014;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62271351 . TC T 95 PASS INDEL;BAVGPOST=0.999;BRSQ=0.733;LDAF=0.0038;AVGPOST=0.9985;RSQ=0.8445;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62271476 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9271;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62271479 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62271597 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62271631 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0004;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62271638 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6083;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62271723 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8668;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62271962 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8507;AVGPOST=0.9952;RSQ=0.9855;ERATE=0.0006;THETA=0.0002;AC=1859;AN=2184 GT:DS:GL:BD 0.85119045 1 1 62272040 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0332;AVGPOST=0.9984;RSQ=0.9810;ERATE=0.0003;THETA=0.0006;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 62272061 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.595;LDAF=0.0058;AVGPOST=0.9919;RSQ=0.4344;ERATE=0.0005;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62272094 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0038;AVGPOST=0.9970;RSQ=0.6866;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62272133 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0032;AVGPOST=0.9972;RSQ=0.5891;ERATE=0.0007;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62272147 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.589;LDAF=0.0449;AVGPOST=0.9750;RSQ=0.7867;ERATE=0.0007;THETA=0.0002;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 62272174 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.0866;AVGPOST=0.9925;RSQ=0.9628;ERATE=0.0007;THETA=0.0004;AC=185;AN=2184 GT:DS:GL:BD 0.08470696 0 1 62272183 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.945;LDAF=0.3539;AVGPOST=0.9719;RSQ=0.9552;ERATE=0.0024;THETA=0.0006;AC=784;AN=2184 GT:DS:GL:BD 0.35897437 0 1 62272207 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.911;LDAF=0.2344;AVGPOST=0.9760;RSQ=0.9515;ERATE=0.0006;THETA=0.0004;AC=515;AN=2184 GT:DS:GL:BD 0.23580585 0 1 62272364 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0201;AVGPOST=0.9989;RSQ=0.9773;ERATE=0.0003;THETA=0.0005;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 62272441 . ACTTAT A 107 PASS INDEL;BAVGPOST=0.998;BRSQ=0.730;LDAF=0.0044;AVGPOST=0.9986;RSQ=0.8608;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62272490 . ACAAATGGC A 385 PASS INDEL;BAVGPOST=0.999;BRSQ=0.697;LDAF=0.0064;AVGPOST=0.9954;RSQ=0.7250;ERATE=0.0005;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62272516 . C CT 110 PASS INDEL;BAVGPOST=0.996;BRSQ=0.726;LDAF=0.0107;AVGPOST=0.9888;RSQ=0.5781;ERATE=0.0018;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62272545 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.7416;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62272616 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0024;AVGPOST=0.9976;RSQ=0.6596;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62272625 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.5908;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62272627 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62272638 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0341;AVGPOST=0.9976;RSQ=0.9726;ERATE=0.0003;THETA=0.0004;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 62272745 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0083;AVGPOST=0.9988;RSQ=0.9419;ERATE=0.0003;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62272972 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0090;AVGPOST=0.9978;RSQ=0.9010;ERATE=0.0003;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62273228 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.921;LDAF=0.0050;AVGPOST=0.9991;RSQ=0.9201;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62273243 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0151;AVGPOST=0.9997;RSQ=0.9909;ERATE=0.0003;THETA=0.0004;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62273265 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5735;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62273330 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62273353 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0024;AVGPOST=0.9984;RSQ=0.7189;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62273386 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.654;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62273489 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7327;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62273567 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.8027;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62273568 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.795;LDAF=0.0043;AVGPOST=0.9979;RSQ=0.8173;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62273724 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.790;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7882;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62273836 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.946;LDAF=0.0194;AVGPOST=0.9973;RSQ=0.9491;ERATE=0.0005;THETA=0.0004;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 62274027 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62274058 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62274086 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62274263 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62274264 . TGTTGTCCAG T 177 PASS INDEL;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6629;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62274286 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62274312 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4230;AVGPOST=0.9995;RSQ=0.9993;ERATE=0.0003;THETA=0.0002;AC=924;AN=2184 GT:DS:GL:BD 0.42307693 0 1 62274322 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62274353 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0128;AVGPOST=1.0000;RSQ=0.9984;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62274374 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0107;AVGPOST=0.9993;RSQ=0.9770;ERATE=0.0004;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 62274531 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2487;AVGPOST=0.9986;RSQ=0.9972;ERATE=0.0003;THETA=0.0003;AC=543;AN=2184 GT:DS:GL:BD 0.24862637 0 1 62274666 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7624;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62274741 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7594;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62274842 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0028;AVGPOST=0.9987;RSQ=0.8151;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62275063 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0640;AVGPOST=0.9981;RSQ=0.9872;ERATE=0.0003;THETA=0.0002;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 62275089 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.721;LDAF=0.0042;AVGPOST=0.9940;RSQ=0.4394;ERATE=0.0007;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62275153 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.618;LDAF=0.0086;AVGPOST=0.9935;RSQ=0.7049;ERATE=0.0004;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62275238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.968;LDAF=0.4914;AVGPOST=0.9922;RSQ=0.9876;ERATE=0.0013;THETA=0.0011;AC=1077;AN=2184 GT:DS:GL:BD 0.49313188 0 1 62275301 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0154;AVGPOST=0.9993;RSQ=0.9828;ERATE=0.0003;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62275491 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62275684 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.989;LDAF=0.3587;AVGPOST=0.9871;RSQ=0.9791;ERATE=0.0018;THETA=0.0008;AC=788;AN=2184 GT:DS:GL:BD 0.36080587 0 1 62275769 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0085;AVGPOST=0.9973;RSQ=0.8719;ERATE=0.0005;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62275898 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4954;AVGPOST=0.9975;RSQ=0.9964;ERATE=0.0004;THETA=0.0003;AC=1084;AN=2184 GT:DS:GL:BD 0.49633700 0 1 62275913 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0624;AVGPOST=0.9994;RSQ=0.9950;ERATE=0.0003;THETA=0.0005;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 62276045 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.393;LDAF=0.0051;AVGPOST=0.9941;RSQ=0.5481;ERATE=0.0013;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62276159 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0051;AVGPOST=0.9978;RSQ=0.8426;ERATE=0.0004;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62276181 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.954;BRSQ=0.701;LDAF=0.0674;AVGPOST=0.9745;RSQ=0.8565;ERATE=0.0005;THETA=0.0016;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 62276230 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.3881;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62276242 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.603;LDAF=0.0036;AVGPOST=0.9982;RSQ=0.7692;ERATE=0.0005;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62276244 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0224;AVGPOST=0.9984;RSQ=0.9738;ERATE=0.0003;THETA=0.0003;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 62276268 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1307;AVGPOST=0.9897;RSQ=0.9632;ERATE=0.0013;THETA=0.0002;AC=280;AN=2184 GT:DS:GL:BD 0.12820514 0 1 62276324 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.532;LDAF=0.0076;AVGPOST=0.9931;RSQ=0.6256;ERATE=0.0006;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62276382 . AT A 16 PASS INDEL;BAVGPOST=0.991;BRSQ=0.470;LDAF=0.0154;AVGPOST=0.9830;RSQ=0.5392;ERATE=0.0021;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 62276411 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.469;LDAF=0.0055;AVGPOST=0.9932;RSQ=0.4812;ERATE=0.0010;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62276415 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.979;LDAF=0.0814;AVGPOST=0.9782;RSQ=0.8901;ERATE=0.0041;THETA=0.0002;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 62276416 MERGED_DEL_2_3744 A . . SV;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6723;ERATE=0.0003;THETA=0.0002;CIEND=-17,33;CIPOS=-18,19;END=62285686;SOURCE=GenomeStrip_62276416_62285686;SVTYPE=DEL;AC=1;AN=21 GT:DS:GL:BD 0.00045788 0 1 62276419 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.873;LDAF=0.0043;AVGPOST=0.9981;RSQ=0.8229;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62276457 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.751;LDAF=0.0030;AVGPOST=0.9984;RSQ=0.7980;ERATE=0.0003;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62276588 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0020;AVGPOST=0.9989;RSQ=0.7901;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62276591 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.511;LDAF=0.0024;AVGPOST=0.9962;RSQ=0.3918;ERATE=0.0007;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62276592 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0624;AVGPOST=0.9987;RSQ=0.9911;ERATE=0.0003;THETA=0.0005;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 62276630 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7919;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62276705 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7315;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62276742 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0064;AVGPOST=0.9981;RSQ=0.8948;ERATE=0.0006;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62276841 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.7042;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62276870 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.852;LDAF=0.0106;AVGPOST=0.9973;RSQ=0.8893;ERATE=0.0004;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62276934 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.4241;AVGPOST=0.9977;RSQ=0.9960;ERATE=0.0005;THETA=0.0003;AC=926;AN=2184 GT:DS:GL:BD 0.42399266 0 1 62277064 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.949;BRSQ=0.847;LDAF=0.1682;AVGPOST=0.9773;RSQ=0.9419;ERATE=0.0015;THETA=0.0005;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 62277101 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.943;LDAF=0.0170;AVGPOST=0.9955;RSQ=0.8939;ERATE=0.0004;THETA=0.0002;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62277233 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.724;LDAF=0.0048;AVGPOST=0.9948;RSQ=0.6219;ERATE=0.0011;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62277235 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.693;LDAF=0.0030;AVGPOST=0.9967;RSQ=0.5813;ERATE=0.0008;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62277328 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.4991;AVGPOST=0.9930;RSQ=0.9889;ERATE=0.0010;THETA=0.0002;AC=1094;AN=2184 GT:DS:GL:BD 0.50091577 1 1 62277435 . TA T 148 PASS INDEL;BAVGPOST=0.951;BRSQ=0.351;LDAF=0.0771;AVGPOST=0.8873;RSQ=0.3703;ERATE=0.0154;THETA=0.0002;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 62277515 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.954;LDAF=0.4221;AVGPOST=0.9789;RSQ=0.9674;ERATE=0.0027;THETA=0.0005;AC=925;AN=2184 GT:DS:GL:BD 0.42353481 0 1 62277518 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.537;LDAF=0.0036;AVGPOST=0.9936;RSQ=0.2339;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62277522 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.900;LDAF=0.0654;AVGPOST=0.9940;RSQ=0.9626;ERATE=0.0005;THETA=0.0003;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 62277589 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0045;AVGPOST=0.9937;RSQ=0.3976;ERATE=0.0009;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62277719 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.902;LDAF=0.0093;AVGPOST=0.9977;RSQ=0.8960;ERATE=0.0004;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62277732 . C CA 978 PASS INDEL;BAVGPOST=0.966;BRSQ=0.629;LDAF=0.0678;AVGPOST=0.9367;RSQ=0.5966;ERATE=0.0128;THETA=0.0003;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 62277747 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4933;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62277872 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0061;AVGPOST=0.9985;RSQ=0.8897;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62277891 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8253;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62277989 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3629;AVGPOST=0.9993;RSQ=0.9987;ERATE=0.0003;THETA=0.0002;AC=793;AN=2184 GT:DS:GL:BD 0.36309522 0 1 62278047 . A AAT 1264 PASS INDEL;BAVGPOST=0.980;BRSQ=0.753;LDAF=0.0501;AVGPOST=0.9632;RSQ=0.7307;ERATE=0.0050;THETA=0.0003;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 62278170 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.709;LDAF=0.0024;AVGPOST=0.9968;RSQ=0.5121;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62278171 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.789;LDAF=0.0066;AVGPOST=0.9964;RSQ=0.7635;ERATE=0.0007;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62278228 . GAC G 2349 PASS INDEL;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0154;AVGPOST=0.9991;RSQ=0.9761;ERATE=0.0004;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62278253 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4036;ERATE=0.0007;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62278302 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.754;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.6891;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62278350 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5345;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62278431 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7494;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62278451 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.657;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5142;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62278478 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0137;AVGPOST=0.9989;RSQ=0.9668;ERATE=0.0003;THETA=0.0002;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62278519 . T TA 25 PASS INDEL;BAVGPOST=0.999;BRSQ=0.619;LDAF=0.0035;AVGPOST=0.9947;RSQ=0.3968;ERATE=0.0014;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62278560 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8292;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62278707 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.634;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5316;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62278897 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0052;AVGPOST=0.9989;RSQ=0.9109;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62279014 . T TAG 8606 PASS INDEL;BAVGPOST=0.920;BRSQ=0.839;LDAF=0.3902;AVGPOST=0.7969;RSQ=0.6646;ERATE=0.0266;THETA=0.0004;AC=775;AN=2184 GT:DS:GL:BD 0.35485348 0 1 62279016 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.915;BRSQ=0.827;LDAF=0.3505;AVGPOST=0.8521;RSQ=0.7419;ERATE=0.0183;THETA=0.0004;AC=726;AN=2184 GT:DS:GL:BD 0.33241758 0 1 62279044 . TATATATACACACAC T 8794 PASS INDEL;BAVGPOST=0.778;BRSQ=0.582;LDAF=0.4487;AVGPOST=0.6790;RSQ=0.4301;ERATE=0.0618;THETA=0.0003;AC=913;AN=2184 GT:DS:GL:BD 0.41804031 0 1 62279155 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0683;AVGPOST=0.9985;RSQ=0.9913;ERATE=0.0003;THETA=0.0004;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 62279228 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.6315;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62279594 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3601;AVGPOST=0.9995;RSQ=0.9990;ERATE=0.0004;THETA=0.0004;AC=787;AN=2184 GT:DS:GL:BD 0.36034799 0 1 62279805 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.880;LDAF=0.0690;AVGPOST=0.9918;RSQ=0.9524;ERATE=0.0005;THETA=0.0002;AC=151;AN=2184 GT:DS:GL:BD 0.06913920 0 1 62279878 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0026;AVGPOST=0.9982;RSQ=0.6838;ERATE=0.0006;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62279885 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0697;AVGPOST=0.9966;RSQ=0.9791;ERATE=0.0006;THETA=0.0004;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 62279932 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.749;LDAF=0.0025;AVGPOST=0.9968;RSQ=0.5097;ERATE=0.0006;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62280105 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3601;AVGPOST=0.9977;RSQ=0.9958;ERATE=0.0006;THETA=0.0004;AC=787;AN=2184 GT:DS:GL:BD 0.36034799 0 1 62280114 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62280122 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0068;AVGPOST=0.9990;RSQ=0.9443;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62280125 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.793;LDAF=0.0055;AVGPOST=0.9972;RSQ=0.8038;ERATE=0.0005;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62280232 . GCA G 336 PASS INDEL;BAVGPOST=0.837;BRSQ=0.121;LDAF=0.2091;AVGPOST=0.7444;RSQ=0.3557;ERATE=0.0135;THETA=0.0003;AC=267;AN=2184 GT:DS:GL:BD 0.12225275 0 1 62280260 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0686;AVGPOST=0.9986;RSQ=0.9913;ERATE=0.0003;THETA=0.0004;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 62280304 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.8496;AVGPOST=0.9975;RSQ=0.9924;ERATE=0.0005;THETA=0.0004;AC=1856;AN=2184 GT:DS:GL:BD 0.84981686 1 1 62280395 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5867;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62280494 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.952;LDAF=0.0165;AVGPOST=0.9968;RSQ=0.9244;ERATE=0.0005;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62280753 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0052;AVGPOST=0.9997;RSQ=0.9735;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62280906 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8341;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62280985 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4889;AVGPOST=0.9983;RSQ=0.9973;ERATE=0.0006;THETA=0.0003;AC=1069;AN=2184 GT:DS:GL:BD 0.48946887 0 1 62281009 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7455;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62281104 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.4897;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62281235 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6059;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62281245 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.935;LDAF=0.0027;AVGPOST=0.9987;RSQ=0.7890;ERATE=0.0006;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62281250 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62281294 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62281468 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4209;AVGPOST=0.9988;RSQ=0.9979;ERATE=0.0003;THETA=0.0003;AC=920;AN=2184 GT:DS:GL:BD 0.42124543 0 1 62281481 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0043;AVGPOST=0.9994;RSQ=0.9382;ERATE=0.0003;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62281519 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8057;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62281535 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0034;AVGPOST=0.9985;RSQ=0.8510;ERATE=0.0008;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62281569 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0346;AVGPOST=0.9993;RSQ=0.9930;ERATE=0.0003;THETA=0.0009;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 62281618 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2500;AVGPOST=0.9962;RSQ=0.9926;ERATE=0.0006;THETA=0.0018;AC=545;AN=2184 GT:DS:GL:BD 0.24954212 0 1 62281689 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.967;LDAF=0.0574;AVGPOST=0.9936;RSQ=0.9587;ERATE=0.0004;THETA=0.0005;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 62281755 . TA T 313 PASS INDEL;BAVGPOST=0.999;BRSQ=0.799;LDAF=0.0026;AVGPOST=0.9974;RSQ=0.5904;ERATE=0.0011;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62281761 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62281808 . TG T 216 PASS INDEL;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5059;ERATE=0.0005;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62281810 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.810;LDAF=0.0080;AVGPOST=0.9973;RSQ=0.8706;ERATE=0.0003;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62281845 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8872;ERATE=0.0005;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62282114 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0356;AVGPOST=0.9964;RSQ=0.9622;ERATE=0.0004;THETA=0.0007;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 62282143 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6343;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62282179 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9308;ERATE=0.0003;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62282411 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62282531 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0061;AVGPOST=0.9996;RSQ=0.9711;ERATE=0.0009;THETA=0.0031;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62282540 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0338;AVGPOST=0.9992;RSQ=0.9892;ERATE=0.0003;THETA=0.0009;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 62282718 . C CA 18 PASS INDEL;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4154;ERATE=0.0005;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62282764 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7359;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62282790 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62283074 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3582;AVGPOST=0.9759;RSQ=0.9609;ERATE=0.0009;THETA=0.0084;AC=781;AN=2184 GT:DS:GL:BD 0.35760072 0 1 62283231 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0069;AVGPOST=0.9984;RSQ=0.9006;ERATE=0.0003;THETA=0.0031;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62283356 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6506;ERATE=0.0005;THETA=0.0048;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62283404 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5871;ERATE=0.0003;THETA=0.0051;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62283416 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6950;ERATE=0.0005;THETA=0.0102;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62283445 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.754;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7179;ERATE=0.0004;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62283454 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6959;ERATE=0.0006;THETA=0.0045;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62283481 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.7040;ERATE=0.0003;THETA=0.0059;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62283504 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.963;LDAF=0.0984;AVGPOST=0.9858;RSQ=0.9431;ERATE=0.0005;THETA=0.0126;AC=210;AN=2184 GT:DS:GL:BD 0.09615385 0 1 62283542 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6975;ERATE=0.0005;THETA=0.0061;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62283734 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0147;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62283957 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0145;AVGPOST=0.9979;RSQ=0.9493;ERATE=0.0004;THETA=0.0097;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62283966 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0086;AVGPOST=0.9994;RSQ=0.9716;ERATE=0.0003;THETA=0.0079;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62284032 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6872;ERATE=0.0004;THETA=0.0255;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62284039 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6960;ERATE=0.0003;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62284122 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62284214 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0049;AVGPOST=0.9993;RSQ=0.9500;ERATE=0.0003;THETA=0.0105;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62284223 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0041;AVGPOST=0.9988;RSQ=0.8764;ERATE=0.0003;THETA=0.0109;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62284279 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0164;AVGPOST=0.9988;RSQ=0.9740;ERATE=0.0003;THETA=0.0101;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62284299 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0093;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62284350 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.965;LDAF=0.9511;AVGPOST=0.9960;RSQ=0.9737;ERATE=0.0005;THETA=0.0256;AC=2078;AN=2184 GT:DS:GL:BD 0.95146519 1 1 62284441 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.862;LDAF=0.0052;AVGPOST=0.9992;RSQ=0.9323;ERATE=0.0007;THETA=0.0273;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62284504 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.933;BRSQ=0.893;LDAF=0.4268;AVGPOST=0.9343;RSQ=0.9067;ERATE=0.0448;THETA=0.0353;AC=920;AN=2184 GT:DS:GL:BD 0.42124543 0 1 62284526 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0306;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62284556 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8366;ERATE=0.0004;THETA=0.0136;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62284680 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.962;LDAF=0.0825;AVGPOST=0.9946;RSQ=0.9710;ERATE=0.0005;THETA=0.0103;AC=177;AN=2184 GT:DS:GL:BD 0.08104396 0 1 62284703 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.959;LDAF=0.8754;AVGPOST=0.9844;RSQ=0.9540;ERATE=0.0040;THETA=0.0170;AC=1914;AN=2184 GT:DS:GL:BD 0.87637365 1 1 62284781 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8494;ERATE=0.0003;THETA=0.0220;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62284982 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9760;AVGPOST=0.9992;RSQ=0.9882;ERATE=0.0003;THETA=0.0206;AC=2132;AN=2184 GT:DS:GL:BD 0.97619045 1 1 62284992 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.940;LDAF=0.1140;AVGPOST=0.9851;RSQ=0.9485;ERATE=0.0046;THETA=0.0082;AC=244;AN=2184 GT:DS:GL:BD 0.11172161 0 1 62285013 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.790;LDAF=0.0037;AVGPOST=0.9973;RSQ=0.7086;ERATE=0.0003;THETA=0.0180;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62285269 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.939;LDAF=0.0383;AVGPOST=0.9927;RSQ=0.9269;ERATE=0.0004;THETA=0.0119;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 62285274 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.420;LDAF=0.0022;AVGPOST=0.9964;RSQ=0.3696;ERATE=0.0006;THETA=0.0146;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62285284 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.914;LDAF=0.1373;AVGPOST=0.9561;RSQ=0.8661;ERATE=0.0007;THETA=0.0020;AC=274;AN=2184 GT:DS:GL:BD 0.12545788 0 1 62285416 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0208;AVGPOST=0.9993;RSQ=0.9843;ERATE=0.0003;THETA=0.0004;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 62285428 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6075;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62285465 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0019;AVGPOST=0.9973;RSQ=0.4911;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62285511 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.917;LDAF=0.0141;AVGPOST=0.9966;RSQ=0.9103;ERATE=0.0006;THETA=0.0023;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62285611 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.7990;ERATE=0.0003;THETA=0.0025;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62285631 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.3959;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62285635 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4829;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62285716 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.899;LDAF=0.8593;AVGPOST=0.9533;RSQ=0.8539;ERATE=0.0068;THETA=0.0010;AC=1903;AN=2184 GT:DS:GL:BD 0.87133700 1 1 62285720 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.852;LDAF=0.0278;AVGPOST=0.9879;RSQ=0.8320;ERATE=0.0020;THETA=0.0033;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 62285744 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0022;AVGPOST=0.9989;RSQ=0.7955;ERATE=0.0003;THETA=0.0049;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62285889 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0253;AVGPOST=0.9985;RSQ=0.9729;ERATE=0.0003;THETA=0.0024;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 62285896 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7548;ERATE=0.0003;THETA=0.0033;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62285957 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.964;LDAF=0.9497;AVGPOST=0.9898;RSQ=0.9242;ERATE=0.0018;THETA=0.0032;AC=2085;AN=2184 GT:DS:GL:BD 0.95467031 1 1 62286009 . CTATT C 132 PASS INDEL;BAVGPOST=0.994;BRSQ=0.670;LDAF=0.0100;AVGPOST=0.9888;RSQ=0.5153;ERATE=0.0028;THETA=0.0013;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62286036 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.732;LDAF=0.0173;AVGPOST=0.9880;RSQ=0.7325;ERATE=0.0005;THETA=0.0040;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 62286068 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4744;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62286255 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0224;AVGPOST=0.9976;RSQ=0.9639;ERATE=0.0004;THETA=0.0033;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 62286309 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.5224;ERATE=0.0004;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62286317 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0044;AVGPOST=0.9984;RSQ=0.8512;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62286350 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0089;AVGPOST=0.9984;RSQ=0.9175;ERATE=0.0003;THETA=0.0008;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62286370 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6404;ERATE=0.0004;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62286450 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9587;ERATE=0.0004;THETA=0.0036;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62286642 rs67425455 AATG A 16485 PASS INDEL;BAVGPOST=0.989;BRSQ=0.968;LDAF=0.1212;AVGPOST=0.9833;RSQ=0.9383;ERATE=0.0003;THETA=0.0005;AC=257;AN=2184 GT:DS:GL:BD 0.11767399 0 1 62286681 . A AAAGC 108 PASS INDEL;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.7345;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62286782 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.420;LDAF=0.0028;AVGPOST=0.9971;RSQ=0.5654;ERATE=0.0006;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62286801 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0057;AVGPOST=0.9985;RSQ=0.8785;ERATE=0.0006;THETA=0.0015;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62286878 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0058;AVGPOST=0.9948;RSQ=0.6836;ERATE=0.0005;THETA=0.0013;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62286911 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0725;AVGPOST=0.9947;RSQ=0.9676;ERATE=0.0003;THETA=0.0008;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 62286958 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.667;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4616;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62287032 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62287103 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.675;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9107;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62287155 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62287237 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62287354 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62287380 . TTA T 16 PASS INDEL;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0057;AVGPOST=0.9991;RSQ=0.9443;ERATE=0.0003;THETA=0.0018;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62287381 . TATAAA T 1609 PASS INDEL;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0059;AVGPOST=0.9993;RSQ=0.9589;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62287396 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0083;AVGPOST=0.9999;RSQ=0.9952;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62287427 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8384;ERATE=0.0003;THETA=0.0031;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62287458 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7921;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62287498 . A AG 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5522;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62287661 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7739;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62287681 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7764;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62287682 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0024;AVGPOST=0.9990;RSQ=0.8151;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62287846 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.931;LDAF=0.0085;AVGPOST=0.9985;RSQ=0.9217;ERATE=0.0003;THETA=0.0014;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62287907 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.5860;ERATE=0.0004;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62287962 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.723;LDAF=0.0020;AVGPOST=0.9981;RSQ=0.6372;ERATE=0.0006;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62288017 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0055;AVGPOST=0.9984;RSQ=0.8730;ERATE=0.0003;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62288115 . A AAG 463 PASS INDEL;BAVGPOST=0.997;BRSQ=0.823;LDAF=0.0071;AVGPOST=0.9966;RSQ=0.7846;ERATE=0.0007;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62288124 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.699;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5628;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62288174 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62288311 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0996;AVGPOST=0.9989;RSQ=0.9954;ERATE=0.0003;THETA=0.0004;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 62288363 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62288395 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8562;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62288569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9562;ERATE=0.0008;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62288730 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62288885 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62289012 . C CT 329 PASS INDEL;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8539;ERATE=0.0003;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62289073 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6588;AVGPOST=0.9982;RSQ=0.9972;ERATE=0.0005;THETA=0.0008;AC=1440;AN=2184 GT:DS:GL:BD 0.65934068 1 1 62289301 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8434;ERATE=0.0012;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62289303 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6544;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62289331 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0252;AVGPOST=0.9999;RSQ=0.9973;ERATE=0.0003;THETA=0.0009;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 62289375 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0041;AVGPOST=0.9973;RSQ=0.7508;ERATE=0.0004;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62289524 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0029;AVGPOST=0.9988;RSQ=0.8427;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62289561 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9996;RSQ=0.9800;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62289687 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8663;AVGPOST=0.9978;RSQ=0.9938;ERATE=0.0003;THETA=0.0004;AC=1893;AN=2184 GT:DS:GL:BD 0.86675823 1 1 62289699 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0498;AVGPOST=0.9980;RSQ=0.9851;ERATE=0.0003;THETA=0.0007;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 62289710 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.7852;AVGPOST=0.9969;RSQ=0.9929;ERATE=0.0004;THETA=0.0002;AC=1715;AN=2184 GT:DS:GL:BD 0.78525639 1 1 62289792 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0058;AVGPOST=0.9994;RSQ=0.9510;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62289827 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62289840 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6200;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62289873 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9490;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62289976 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8568;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62290023 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5495;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62290033 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0041;AVGPOST=0.9984;RSQ=0.8403;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62290108 . T TTTG 1598 PASS INDEL;BAVGPOST=0.933;BRSQ=0.396;LDAF=0.0982;AVGPOST=0.8689;RSQ=0.4180;ERATE=0.0207;THETA=0.0004;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 62290180 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62290201 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5229;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62290486 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0083;AVGPOST=0.9989;RSQ=0.9535;ERATE=0.0003;THETA=0.0010;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62290589 . C CTA 22 PASS INDEL;BAVGPOST=1.000;BRSQ=0.750;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5466;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62290776 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62290822 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8540;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62290900 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62291102 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62291281 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8482;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62291309 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62291391 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6314;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62291541 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62291618 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8778;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62291679 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0756;AVGPOST=0.9993;RSQ=0.9958;ERATE=0.0004;THETA=0.0003;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 62291705 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62291924 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.847;LDAF=0.0021;AVGPOST=0.9976;RSQ=0.5833;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62291952 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0206;AVGPOST=0.9994;RSQ=0.9873;ERATE=0.0003;THETA=0.0005;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 62291954 . C CCAGCAA 6122 PASS INDEL;BAVGPOST=0.995;BRSQ=0.867;LDAF=0.0205;AVGPOST=0.9961;RSQ=0.9226;ERATE=0.0009;THETA=0.0004;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 62292038 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8141;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62292202 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62292323 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5973;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62292335 . TA T 355 PASS INDEL;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8709;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62292422 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0258;AVGPOST=0.9986;RSQ=0.9770;ERATE=0.0003;THETA=0.0004;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 62292690 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.5531;ERATE=0.0005;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62292713 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5677;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62292870 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=1.0000;RSQ=0.9960;ERATE=0.0003;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62292902 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.941;LDAF=0.0125;AVGPOST=0.9981;RSQ=0.9441;ERATE=0.0003;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62292940 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.817;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7377;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62293096 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62293185 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62293227 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62293269 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62293288 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0188;AVGPOST=0.9999;RSQ=0.9980;ERATE=0.0003;THETA=0.0006;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 62293342 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0201;AVGPOST=0.9997;RSQ=0.9942;ERATE=0.0004;THETA=0.0007;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 62293547 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8305;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62293618 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62293640 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.893;LDAF=0.0050;AVGPOST=0.9980;RSQ=0.8287;ERATE=0.0006;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62293645 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62293646 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.606;LDAF=0.0044;AVGPOST=0.9976;RSQ=0.7959;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62293648 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0754;AVGPOST=0.9989;RSQ=0.9933;ERATE=0.0004;THETA=0.0008;AC=163;AN=2184 GT:DS:GL:BD 0.07463370 0 1 62293687 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0057;AVGPOST=0.9988;RSQ=0.9153;ERATE=0.0004;THETA=0.0036;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62293776 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.5861;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62293840 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.987;LDAF=0.7941;AVGPOST=0.9888;RSQ=0.9766;ERATE=0.0013;THETA=0.0039;AC=1737;AN=2184 GT:DS:GL:BD 0.79532969 1 1 62293847 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0008;AVGPOST=0.9989;RSQ=0.4437;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62293915 . C CA 657 PASS INDEL;BAVGPOST=0.858;BRSQ=0.343;LDAF=0.2001;AVGPOST=0.7565;RSQ=0.3533;ERATE=0.0535;THETA=0.0005;AC=232;AN=2184 GT:DS:GL:BD 0.10622711 0 1 62293930 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.913;LDAF=0.0462;AVGPOST=0.9874;RSQ=0.8857;ERATE=0.0004;THETA=0.0003;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 62294004 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.961;LDAF=0.0739;AVGPOST=0.9947;RSQ=0.9686;ERATE=0.0004;THETA=0.0007;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 62294230 . TAA T 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.751;LDAF=0.0016;AVGPOST=0.9981;RSQ=0.4675;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62294245 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.725;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4394;ERATE=0.0003;THETA=0.0051;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62294286 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7079;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62294299 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62294327 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0068;AVGPOST=0.9988;RSQ=0.9194;ERATE=0.0003;THETA=0.0061;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62294372 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9625;ERATE=0.0007;THETA=0.0022;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62294430 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0651;AVGPOST=0.9992;RSQ=0.9937;ERATE=0.0003;THETA=0.0003;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 62294639 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0033;AVGPOST=0.9988;RSQ=0.8655;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62294668 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0154;AVGPOST=0.9994;RSQ=0.9829;ERATE=0.0004;THETA=0.0019;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62294735 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0022;AVGPOST=0.9981;RSQ=0.6412;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62294744 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0067;AVGPOST=0.9974;RSQ=0.8473;ERATE=0.0011;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62294766 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0049;AVGPOST=0.9993;RSQ=0.9500;ERATE=0.0003;THETA=0.0013;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62294796 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7233;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62294838 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.665;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7303;ERATE=0.0003;THETA=0.0060;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62294922 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1173;AVGPOST=0.9926;RSQ=0.9717;ERATE=0.0004;THETA=0.0004;AC=255;AN=2184 GT:DS:GL:BD 0.11675824 0 1 62295187 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62295188 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0029;AVGPOST=0.9990;RSQ=0.8663;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62295205 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9308;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62295219 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7620;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62295269 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0242;AVGPOST=1.0000;RSQ=0.9992;ERATE=0.0003;THETA=0.0009;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 62295297 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62295312 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8366;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62295344 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6794;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62295351 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0188;AVGPOST=0.9999;RSQ=0.9969;ERATE=0.0003;THETA=0.0045;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 62295359 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.963;LDAF=0.0042;AVGPOST=0.9994;RSQ=0.9456;ERATE=0.0007;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62295405 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.7644;ERATE=0.0003;THETA=0.0036;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62295526 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0047;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62295561 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8913;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62295566 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0035;AVGPOST=0.9984;RSQ=0.8385;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62295705 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0067;AVGPOST=0.9981;RSQ=0.8995;ERATE=0.0003;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62295780 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.872;LDAF=0.0059;AVGPOST=0.9986;RSQ=0.8937;ERATE=0.0004;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62295824 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6194;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62295975 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0063;AVGPOST=0.9983;RSQ=0.9044;ERATE=0.0005;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62296139 rs10664173 A ACATTTTT 98194 PASS INDEL;BAVGPOST=0.939;BRSQ=0.888;LDAF=0.6812;AVGPOST=0.9002;RSQ=0.8356;ERATE=0.0190;THETA=0.0008;AC=1545;AN=2184 GT:DS:GL:BD 0.70741761 1 1 62296208 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0020;AVGPOST=0.9971;RSQ=0.3589;ERATE=0.0008;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62296303 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0141;AVGPOST=0.9987;RSQ=0.9637;ERATE=0.0003;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62296411 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62296447 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9881;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62296501 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62296599 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7124;ERATE=0.0004;THETA=0.0026;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62296677 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0170;AVGPOST=0.9996;RSQ=0.9896;ERATE=0.0003;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 62296751 . T TG 374 PASS INDEL;BAVGPOST=0.997;BRSQ=0.799;LDAF=0.0051;AVGPOST=0.9973;RSQ=0.7617;ERATE=0.0006;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62296890 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.835;LDAF=0.0039;AVGPOST=0.9994;RSQ=0.9223;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62296893 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62297049 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0787;AVGPOST=0.9981;RSQ=0.9884;ERATE=0.0003;THETA=0.0009;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 62297198 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.739;LDAF=0.0020;AVGPOST=0.9990;RSQ=0.8085;ERATE=0.0003;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62297284 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0642;AVGPOST=0.9992;RSQ=0.9947;ERATE=0.0003;THETA=0.0006;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 62297336 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.704;LDAF=0.0023;AVGPOST=0.9983;RSQ=0.7022;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62297631 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7802;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62297680 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9113;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62297812 . CAAAG C 9998 PASS INDEL;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0428;AVGPOST=0.9974;RSQ=0.9790;ERATE=0.0004;THETA=0.0005;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 62297985 . CT C 7887 PASS INDEL;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0490;AVGPOST=0.9988;RSQ=0.9890;ERATE=0.0005;THETA=0.0007;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 62298262 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7751;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62298422 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.977;LDAF=0.0428;AVGPOST=0.9979;RSQ=0.9817;ERATE=0.0003;THETA=0.0004;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 62298559 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0004;AVGPOST=0.9993;RSQ=0.2440;ERATE=0.0004;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62298762 . G GA 16 PASS INDEL;BAVGPOST=0.999;BRSQ=0.610;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.8046;ERATE=0.0003;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62298931 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.6981;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62298945 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0080;AVGPOST=0.9995;RSQ=0.9695;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62299146 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62299371 . G GA 7 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6770;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62299382 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62299410 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62299421 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62299517 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62299722 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0087;AVGPOST=0.9988;RSQ=0.9467;ERATE=0.0003;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62299808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0022;AVGPOST=0.9990;RSQ=0.8462;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62299809 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8551;ERATE=0.0007;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62299888 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9687;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62299899 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7739;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62299902 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8364;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62300030 . TG T 258 PASS INDEL;BAVGPOST=0.999;BRSQ=0.893;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.7976;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62300199 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0643;AVGPOST=0.9989;RSQ=0.9932;ERATE=0.0003;THETA=0.0005;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 62300297 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6747;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62300304 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0069;AVGPOST=0.9979;RSQ=0.9019;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62300355 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5959;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62300573 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0063;AVGPOST=0.9968;RSQ=0.8151;ERATE=0.0004;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62300587 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8913;ERATE=0.0003;THETA=0.0036;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62300620 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.758;LDAF=0.0020;AVGPOST=0.9990;RSQ=0.7998;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62300621 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.670;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5087;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62300862 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0543;AVGPOST=0.9993;RSQ=0.9943;ERATE=0.0003;THETA=0.0002;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 62300932 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.761;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8012;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62301014 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0007;AVGPOST=0.9992;RSQ=0.4961;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62301026 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.8078;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62301062 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62301517 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9200;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62301588 . CTAT C 119 PASS INDEL;BAVGPOST=1.000;BRSQ=0.690;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4059;ERATE=0.0008;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62301702 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.6360;AVGPOST=0.9952;RSQ=0.9928;ERATE=0.0004;THETA=0.0003;AC=1392;AN=2184 GT:DS:GL:BD 0.63736266 1 1 62301746 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.792;LDAF=0.0043;AVGPOST=0.9980;RSQ=0.8266;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62301770 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0244;AVGPOST=0.9996;RSQ=0.9933;ERATE=0.0003;THETA=0.0006;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 62301773 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.496;LDAF=0.0016;AVGPOST=0.9976;RSQ=0.4398;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62301837 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6024;ERATE=0.0007;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62301941 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0029;AVGPOST=0.9986;RSQ=0.7687;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62301986 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0311;AVGPOST=0.9989;RSQ=0.9849;ERATE=0.0004;THETA=0.0004;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 62302129 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0032;AVGPOST=0.9995;RSQ=0.9329;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62302130 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.8142;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62302169 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.855;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8771;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62302183 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.935;LDAF=0.0134;AVGPOST=0.9979;RSQ=0.9367;ERATE=0.0003;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 62302293 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6096;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62302307 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0097;AVGPOST=0.9993;RSQ=0.9682;ERATE=0.0004;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62302366 rs71759640 CTTG C 3757 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0190;AVGPOST=0.9995;RSQ=0.9897;ERATE=0.0004;THETA=0.0003;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 62302372 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9991;RSQ=0.9455;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62302429 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0026;AVGPOST=0.9987;RSQ=0.7990;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62302493 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.6908;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62302545 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.958;LDAF=0.0198;AVGPOST=0.9975;RSQ=0.9568;ERATE=0.0003;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 62302601 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.951;LDAF=0.0777;AVGPOST=0.9939;RSQ=0.9703;ERATE=0.0003;THETA=0.0004;AC=169;AN=2184 GT:DS:GL:BD 0.07738096 0 1 62302602 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.951;LDAF=0.0775;AVGPOST=0.9948;RSQ=0.9734;ERATE=0.0003;THETA=0.0004;AC=169;AN=2184 GT:DS:GL:BD 0.07738096 0 1 62302622 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6443;AVGPOST=0.9978;RSQ=0.9961;ERATE=0.0004;THETA=0.0007;AC=1409;AN=2184 GT:DS:GL:BD 0.64514655 1 1 62302752 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6872;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62302772 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0124;AVGPOST=0.9979;RSQ=0.9305;ERATE=0.0003;THETA=0.0009;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62302793 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0101;AVGPOST=0.9990;RSQ=0.9559;ERATE=0.0004;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62302925 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5425;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62303187 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7215;ERATE=0.0004;THETA=0.0036;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62303331 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.976;LDAF=0.0801;AVGPOST=0.9946;RSQ=0.9728;ERATE=0.0006;THETA=0.0004;AC=173;AN=2184 GT:DS:GL:BD 0.07921246 0 1 62303383 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5729;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62303408 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.835;LDAF=0.0132;AVGPOST=0.9957;RSQ=0.8742;ERATE=0.0006;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62303449 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0078;AVGPOST=0.9973;RSQ=0.8429;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62303492 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0064;AVGPOST=0.9972;RSQ=0.8279;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62303523 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.889;LDAF=0.0063;AVGPOST=0.9984;RSQ=0.8918;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62303680 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0067;AVGPOST=0.9995;RSQ=0.9762;ERATE=0.0003;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62303776 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7189;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62303859 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.7021;AVGPOST=0.9973;RSQ=0.9952;ERATE=0.0003;THETA=0.0004;AC=1534;AN=2184 GT:DS:GL:BD 0.70238096 1 1 62303919 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.581;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5308;ERATE=0.0005;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62303949 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7748;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62304032 rs5774576 C CT 663 PASS INDEL;BAVGPOST=0.928;BRSQ=0.511;LDAF=0.1297;AVGPOST=0.8518;RSQ=0.4487;ERATE=0.0362;THETA=0.0004;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 62304235 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.804;LDAF=0.0156;AVGPOST=0.9909;RSQ=0.7791;ERATE=0.0007;THETA=0.0007;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 62304288 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.658;LDAF=0.0060;AVGPOST=0.9925;RSQ=0.4586;ERATE=0.0006;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62304308 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.854;LDAF=0.0087;AVGPOST=0.9944;RSQ=0.7534;ERATE=0.0006;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62304341 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0072;AVGPOST=0.9992;RSQ=0.9594;ERATE=0.0004;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62304419 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0042;AVGPOST=0.9997;RSQ=0.9693;ERATE=0.0003;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62304512 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0037;AVGPOST=0.9981;RSQ=0.7751;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62304539 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9411;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62304744 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7193;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62304786 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0115;AVGPOST=0.9989;RSQ=0.9610;ERATE=0.0007;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62304817 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8474;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62304848 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0070;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62304989 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.950;LDAF=0.0162;AVGPOST=0.9977;RSQ=0.9411;ERATE=0.0004;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62305038 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0468;AVGPOST=0.9995;RSQ=0.9948;ERATE=0.0003;THETA=0.0002;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 62305100 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.788;LDAF=0.0116;AVGPOST=0.9964;RSQ=0.8843;ERATE=0.0003;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62305240 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.981;LDAF=0.2732;AVGPOST=0.9811;RSQ=0.9678;ERATE=0.0005;THETA=0.0006;AC=593;AN=2184 GT:DS:GL:BD 0.27152014 0 1 62305447 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7088;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62305488 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0204;AVGPOST=0.9990;RSQ=0.9785;ERATE=0.0003;THETA=0.0005;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 62305497 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0027;AVGPOST=0.9983;RSQ=0.7740;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62305521 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0029;AVGPOST=0.9986;RSQ=0.7888;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62305541 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.935;LDAF=0.0102;AVGPOST=0.9982;RSQ=0.9304;ERATE=0.0003;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62305604 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0204;AVGPOST=0.9991;RSQ=0.9800;ERATE=0.0004;THETA=0.0003;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 62305682 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.984;LDAF=0.1178;AVGPOST=0.9890;RSQ=0.9571;ERATE=0.0009;THETA=0.0002;AC=257;AN=2184 GT:DS:GL:BD 0.11767399 0 1 62305704 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.781;LDAF=0.0048;AVGPOST=0.9984;RSQ=0.8597;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62305840 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0027;AVGPOST=0.9979;RSQ=0.7280;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62305883 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.6474;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62305885 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0064;AVGPOST=0.9992;RSQ=0.9602;ERATE=0.0004;THETA=0.0009;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62305995 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0580;AVGPOST=0.9981;RSQ=0.9855;ERATE=0.0004;THETA=0.0006;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 62306140 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4872;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62306535 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.800;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7817;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62306661 . T TTTCTATGA 391 PASS INDEL;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0041;AVGPOST=0.9964;RSQ=0.6545;ERATE=0.0007;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62306817 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9988;RSQ=0.8738;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62306819 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.6444;AVGPOST=0.9952;RSQ=0.9924;ERATE=0.0006;THETA=0.0005;AC=1407;AN=2184 GT:DS:GL:BD 0.64423078 1 1 62306856 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7814;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62307432 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.917;LDAF=0.0029;AVGPOST=0.9989;RSQ=0.8593;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62307445 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62307509 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0042;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62307670 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.950;LDAF=0.0370;AVGPOST=0.9940;RSQ=0.9452;ERATE=0.0003;THETA=0.0002;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 62307781 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9597;ERATE=0.0004;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62307947 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62307970 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6262;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62308016 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6082;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62308028 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.8405;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62308064 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6598;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62308077 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5516;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62308177 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5445;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62308224 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62308258 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6396;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62308291 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.7837;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62308350 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7238;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62308490 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62308502 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9881;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62308517 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62308575 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9338;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62308622 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7368;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62308657 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7117;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62308665 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.7096;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62308788 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7457;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62308878 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8393;ERATE=0.0005;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62308945 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.905;LDAF=0.0127;AVGPOST=0.9979;RSQ=0.9394;ERATE=0.0003;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 62308953 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0156;AVGPOST=0.9999;RSQ=0.9961;ERATE=0.0003;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62308962 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0164;AVGPOST=0.9991;RSQ=0.9780;ERATE=0.0005;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62309015 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5491;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62309102 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0024;AVGPOST=0.9994;RSQ=0.8815;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62309331 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7257;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62309342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.701;LDAF=0.0025;AVGPOST=0.9977;RSQ=0.5874;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62309447 . CAG C 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5014;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62309452 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0022;AVGPOST=0.9978;RSQ=0.6208;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62309453 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8855;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62309501 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0868;AVGPOST=0.9982;RSQ=0.9915;ERATE=0.0003;THETA=0.0006;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 62309562 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0838;AVGPOST=0.9984;RSQ=0.9909;ERATE=0.0004;THETA=0.0003;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 62309570 . T TA 10293 PASS INDEL;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0822;AVGPOST=0.9979;RSQ=0.9896;ERATE=0.0004;THETA=0.0005;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 62309702 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0166;AVGPOST=0.9994;RSQ=0.9844;ERATE=0.0003;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62309796 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0567;AVGPOST=0.9987;RSQ=0.9892;ERATE=0.0003;THETA=0.0008;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 62310048 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0870;AVGPOST=0.9964;RSQ=0.9821;ERATE=0.0005;THETA=0.0003;AC=191;AN=2184 GT:DS:GL:BD 0.08745421 0 1 62310117 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0109;AVGPOST=0.9980;RSQ=0.9398;ERATE=0.0010;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 62310165 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7659;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62310168 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0020;AVGPOST=0.9994;RSQ=0.8622;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62310243 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6718;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62310244 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5911;ERATE=0.0003;THETA=0.0050;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62310263 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0071;AVGPOST=0.9973;RSQ=0.8482;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62310315 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.684;LDAF=0.0034;AVGPOST=0.9969;RSQ=0.6834;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62310316 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0037;AVGPOST=0.9992;RSQ=0.8907;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62310707 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0069;AVGPOST=0.9995;RSQ=0.9696;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62310784 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9997;RSQ=0.9538;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62310795 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9345;AVGPOST=0.9986;RSQ=0.9925;ERATE=0.0003;THETA=0.0004;AC=2042;AN=2184 GT:DS:GL:BD 0.93498170 1 1 62310865 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7393;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62311160 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0034;AVGPOST=0.9994;RSQ=0.9121;ERATE=0.0003;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62311166 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7211;ERATE=0.0007;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62311175 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9215;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62311203 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0033;AVGPOST=0.9995;RSQ=0.9364;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62311238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5993;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62311260 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0160;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62311335 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0544;AVGPOST=0.9990;RSQ=0.9933;ERATE=0.0003;THETA=0.0005;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 62311354 . A AACAC 872 PASS INDEL;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0042;AVGPOST=0.9987;RSQ=0.8643;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62311375 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9797;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62311501 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0793;AVGPOST=0.9995;RSQ=0.9976;ERATE=0.0003;THETA=0.0004;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 62311668 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0063;AVGPOST=0.9987;RSQ=0.9040;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62311716 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.5125;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62311722 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5918;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62311774 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.879;LDAF=0.0075;AVGPOST=0.9986;RSQ=0.9260;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62311845 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.8803;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62311980 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.0722;AVGPOST=0.9980;RSQ=0.9886;ERATE=0.0006;THETA=0.0007;AC=156;AN=2184 GT:DS:GL:BD 0.07142857 0 1 62312094 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0029;AVGPOST=0.9988;RSQ=0.8460;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62312100 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0354;AVGPOST=0.9987;RSQ=0.9821;ERATE=0.0004;THETA=0.0005;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 62312391 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7908;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62312460 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8745;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62312579 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.8896;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62312654 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.987;LDAF=0.3031;AVGPOST=0.9859;RSQ=0.9777;ERATE=0.0004;THETA=0.0002;AC=660;AN=2184 GT:DS:GL:BD 0.30219781 0 1 62312924 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.994;LDAF=0.6475;AVGPOST=0.9971;RSQ=0.9951;ERATE=0.0004;THETA=0.0002;AC=1415;AN=2184 GT:DS:GL:BD 0.64789379 1 1 62313020 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62313021 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62313064 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0078;AVGPOST=0.9996;RSQ=0.9777;ERATE=0.0003;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62313142 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.7667;AVGPOST=0.9986;RSQ=0.9970;ERATE=0.0003;THETA=0.0004;AC=1675;AN=2184 GT:DS:GL:BD 0.76694137 1 1 62313159 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5653;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62313169 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62313170 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.821;LDAF=0.0047;AVGPOST=0.9983;RSQ=0.8599;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62313209 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=0.9996;RSQ=0.9792;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62313274 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0075;AVGPOST=0.9997;RSQ=0.9803;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62313444 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7051;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62313483 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0165;AVGPOST=0.9994;RSQ=0.9844;ERATE=0.0003;THETA=0.0007;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62313486 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.7662;AVGPOST=0.9980;RSQ=0.9957;ERATE=0.0004;THETA=0.0003;AC=1675;AN=2184 GT:DS:GL:BD 0.76694137 1 1 62313517 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0244;AVGPOST=0.9996;RSQ=0.9937;ERATE=0.0003;THETA=0.0009;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 62313633 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0844;AVGPOST=0.9987;RSQ=0.9936;ERATE=0.0003;THETA=0.0048;AC=184;AN=2184 GT:DS:GL:BD 0.08424909 0 1 62313831 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4491;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62313850 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.9685;AVGPOST=0.9992;RSQ=0.9905;ERATE=0.0003;THETA=0.0027;AC=2116;AN=2184 GT:DS:GL:BD 0.96886444 1 1 62313908 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8665;ERATE=0.0003;THETA=0.0035;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62313918 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0045;AVGPOST=0.9998;RSQ=0.9759;ERATE=0.0003;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62313991 . TTCTG T 91 PASS INDEL;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62314107 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5704;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62314241 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7769;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62314325 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0154;AVGPOST=0.9987;RSQ=0.9634;ERATE=0.0003;THETA=0.0004;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62314383 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0048;AVGPOST=0.9996;RSQ=0.9691;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62314438 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0048;AVGPOST=0.9994;RSQ=0.9527;ERATE=0.0003;THETA=0.0111;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62314467 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9549;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62314525 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0041;AVGPOST=0.9999;RSQ=0.9841;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62314564 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0032;AVGPOST=0.9959;RSQ=0.5513;ERATE=0.0004;THETA=0.0063;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62314618 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62314632 . CT C 987 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0087;AVGPOST=0.9995;RSQ=0.9785;ERATE=0.0003;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62314663 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62314719 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9997;RSQ=0.9813;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62314923 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0722;AVGPOST=0.9981;RSQ=0.9903;ERATE=0.0004;THETA=0.0010;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 62314929 . G GA 1689 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0127;AVGPOST=0.9991;RSQ=0.9667;ERATE=0.0003;THETA=0.0008;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62314964 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0568;AVGPOST=0.9986;RSQ=0.9892;ERATE=0.0003;THETA=0.0003;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 62315006 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0061;AVGPOST=0.9966;RSQ=0.8111;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62315244 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5190;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62315256 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.978;LDAF=0.0622;AVGPOST=0.9993;RSQ=0.9943;ERATE=0.0004;THETA=0.0004;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 62315284 rs71677049 CTA C 12758 PASS INDEL;BAVGPOST=0.983;BRSQ=0.903;LDAF=0.0734;AVGPOST=0.9831;RSQ=0.9207;ERATE=0.0004;THETA=0.0005;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 62315297 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0081;AVGPOST=0.9994;RSQ=0.9692;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62315418 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62315480 . A AT 134 PASS INDEL;BAVGPOST=0.999;BRSQ=0.720;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.5529;ERATE=0.0006;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62315533 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62315570 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6328;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62315714 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.0865;AVGPOST=0.9980;RSQ=0.9904;ERATE=0.0007;THETA=0.0012;AC=189;AN=2184 GT:DS:GL:BD 0.08653846 0 1 62315846 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.597;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4613;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62315997 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6877;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62316020 . CAT C 120 PASS INDEL;BAVGPOST=0.999;BRSQ=0.785;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6555;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62316054 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62316225 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62316717 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0021;AVGPOST=0.9981;RSQ=0.6607;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62316958 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6576;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62316969 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62317122 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0029;AVGPOST=0.9978;RSQ=0.7392;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62317210 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62317247 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0042;AVGPOST=0.9996;RSQ=0.9632;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62317292 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6258;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62317327 . AC A 145 PASS INDEL;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7860;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62317344 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0914;AVGPOST=0.9966;RSQ=0.9839;ERATE=0.0003;THETA=0.0009;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 62317480 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0259;AVGPOST=0.9980;RSQ=0.9703;ERATE=0.0005;THETA=0.0004;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 62317547 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62317552 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62318110 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7528;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62318136 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62318192 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.9736;AVGPOST=0.9987;RSQ=0.9820;ERATE=0.0003;THETA=0.0005;AC=2126;AN=2184 GT:DS:GL:BD 0.97344321 1 1 62318218 rs34469475 TCAG T 10666 PASS INDEL;BAVGPOST=0.996;BRSQ=0.985;LDAF=0.0834;AVGPOST=0.9973;RSQ=0.9880;ERATE=0.0003;THETA=0.0005;AC=182;AN=2184 GT:DS:GL:BD 0.08333334 0 1 62318237 . AG A 750 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9490;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62318372 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9985;RSQ=0.7966;ERATE=0.0003;THETA=0.0027;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62318582 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8463;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62318717 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9141;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62318761 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5858;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62319285 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.5899;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62319386 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62319558 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6261;ERATE=0.0003;THETA=0.0054;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62319595 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7882;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62319597 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0024;AVGPOST=0.9977;RSQ=0.6426;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62319607 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0075;AVGPOST=0.9997;RSQ=0.9794;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62319618 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9213;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62319677 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9855;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62319921 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.898;LDAF=0.0088;AVGPOST=0.9949;RSQ=0.7881;ERATE=0.0003;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62320034 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9473;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62320064 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6758;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62320145 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0036;AVGPOST=0.9976;RSQ=0.7895;ERATE=0.0007;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62320173 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.946;LDAF=0.0156;AVGPOST=0.9998;RSQ=0.9946;ERATE=0.0003;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62320188 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62320209 . ATGCAGAGCAAGC A 98 PASS INDEL;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0029;AVGPOST=0.9959;RSQ=0.4525;ERATE=0.0004;THETA=0.0023;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62320379 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0054;AVGPOST=0.9988;RSQ=0.9098;ERATE=0.0003;THETA=0.0010;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62320395 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0106;AVGPOST=0.9986;RSQ=0.9542;ERATE=0.0003;THETA=0.0002;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 62320432 . G GT 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4979;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62320445 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0109;AVGPOST=0.9971;RSQ=0.8857;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62320672 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0599;AVGPOST=0.9988;RSQ=0.9924;ERATE=0.0003;THETA=0.0005;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 62320941 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7423;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62320968 . CA C 115 PASS INDEL;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62321269 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9106;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62321270 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7515;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62321284 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62321459 . TG T 47 PASS INDEL;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.4493;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62321471 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0040;AVGPOST=0.9999;RSQ=0.9872;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62321515 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0622;AVGPOST=0.9998;RSQ=0.9986;ERATE=0.0003;THETA=0.0005;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 62321516 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62321677 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9996;RSQ=0.8397;ERATE=0.0003;THETA=0.0015;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62321678 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62321692 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0017;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62322019 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9659;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62322118 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8857;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62322211 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0012;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62322257 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0403;AVGPOST=0.9995;RSQ=0.9944;ERATE=0.0003;THETA=0.0006;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 62322283 . CAG C 39 PASS INDEL;BAVGPOST=0.998;BRSQ=0.666;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.5488;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62322411 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9172;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62322476 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0923;AVGPOST=0.9968;RSQ=0.9830;ERATE=0.0005;THETA=0.0009;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 62322482 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0157;AVGPOST=0.9996;RSQ=0.9878;ERATE=0.0003;THETA=0.0009;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62322655 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62322738 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9994;RSQ=0.4995;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62322746 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9910;ERATE=0.0003;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62322817 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0669;AVGPOST=0.9997;RSQ=0.9981;ERATE=0.0003;THETA=0.0006;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 62322873 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0135;AVGPOST=0.9994;RSQ=0.9803;ERATE=0.0004;THETA=0.0015;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 62322876 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6768;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62322906 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62322971 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0558;AVGPOST=0.9990;RSQ=0.9928;ERATE=0.0005;THETA=0.0004;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 62323097 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.6377;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62323111 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0032;AVGPOST=0.9989;RSQ=0.8491;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62323146 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0125;AVGPOST=0.9989;RSQ=0.9646;ERATE=0.0003;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 62323196 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0020;AVGPOST=0.9990;RSQ=0.8020;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62323321 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62323407 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7491;ERATE=0.0014;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62323440 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5706;ERATE=0.0004;THETA=0.0042;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62323582 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.863;LDAF=0.0038;AVGPOST=0.9989;RSQ=0.8923;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62323744 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2153;AVGPOST=0.9994;RSQ=0.9984;ERATE=0.0003;THETA=0.0009;AC=470;AN=2184 GT:DS:GL:BD 0.21520147 0 1 62323920 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5655;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62323977 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0298;AVGPOST=0.9997;RSQ=0.9959;ERATE=0.0003;THETA=0.0005;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 62324079 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0039;AVGPOST=0.9985;RSQ=0.8582;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62324096 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62324099 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8481;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62324113 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62324161 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.728;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5469;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62324214 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0031;AVGPOST=0.9983;RSQ=0.7530;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62324231 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0048;AVGPOST=0.9985;RSQ=0.9102;ERATE=0.0003;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62324291 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5869;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62324318 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9620;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62324422 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0044;AVGPOST=0.9990;RSQ=0.9336;ERATE=0.0003;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62324451 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1910;AVGPOST=0.9994;RSQ=0.9983;ERATE=0.0003;THETA=0.0004;AC=417;AN=2184 GT:DS:GL:BD 0.19093406 0 1 62324510 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8801;ERATE=0.0006;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62324527 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6889;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62324569 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.8498;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62324611 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62324680 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0020;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62324722 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62324742 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2879;AVGPOST=0.9972;RSQ=0.9949;ERATE=0.0006;THETA=0.0004;AC=627;AN=2184 GT:DS:GL:BD 0.28708792 0 1 62324865 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6057;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62325083 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7472;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62325222 . CCT C 21855 PASS INDEL;BAVGPOST=0.987;BRSQ=0.412;LDAF=0.9689;AVGPOST=0.9527;RSQ=0.4014;ERATE=0.0066;THETA=0.0003;AC=2152;AN=2184 GT:DS:GL:BD 0.98534799 1 1 62325292 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0363;AVGPOST=0.9992;RSQ=0.9898;ERATE=0.0004;THETA=0.0006;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 62325302 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4638;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62325316 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0047;AVGPOST=0.9995;RSQ=0.9500;ERATE=0.0004;THETA=0.0010;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62325485 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.5471;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62325544 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.978;LDAF=0.0694;AVGPOST=0.9955;RSQ=0.9788;ERATE=0.0003;THETA=0.0009;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 62325637 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9124;ERATE=0.0006;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62325885 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0077;AVGPOST=0.9992;RSQ=0.9516;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62326019 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0082;AVGPOST=0.9976;RSQ=0.8734;ERATE=0.0007;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62326051 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7072;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62326066 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6010;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62326358 . G GC 104 PASS INDEL;BAVGPOST=1.000;BRSQ=0.678;LDAF=0.0006;AVGPOST=0.9992;RSQ=0.4386;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62326438 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0075;AVGPOST=0.9989;RSQ=0.9356;ERATE=0.0005;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62326583 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0077;AVGPOST=0.9972;RSQ=0.8525;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62326677 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.948;LDAF=0.0117;AVGPOST=0.9966;RSQ=0.8754;ERATE=0.0005;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62327265 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62327304 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62327306 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0008;AVGPOST=0.9998;RSQ=0.8876;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62327344 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0114;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 62327447 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0073;AVGPOST=1.0000;RSQ=0.9970;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62327531 . T TTC 4750 PASS INDEL;BAVGPOST=0.989;BRSQ=0.925;LDAF=0.0760;AVGPOST=0.9931;RSQ=0.9612;ERATE=0.0011;THETA=0.0007;AC=162;AN=2184 GT:DS:GL:BD 0.07417583 0 1 62327535 . C CTA 524 PASS INDEL;BAVGPOST=0.986;BRSQ=0.889;LDAF=0.0687;AVGPOST=0.9903;RSQ=0.9424;ERATE=0.0006;THETA=0.0009;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 62327541 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=0.9998;RSQ=0.9912;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62327691 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0056;AVGPOST=0.9973;RSQ=0.7969;ERATE=0.0003;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62327693 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0239;AVGPOST=0.9997;RSQ=0.9947;ERATE=0.0003;THETA=0.0009;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 62327737 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0033;AVGPOST=0.9984;RSQ=0.8104;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62327747 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0004;AVGPOST=0.9994;RSQ=0.4601;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62327911 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0245;AVGPOST=0.9995;RSQ=0.9910;ERATE=0.0003;THETA=0.0004;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 62327937 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0137;AVGPOST=0.9963;RSQ=0.8887;ERATE=0.0007;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 62327938 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0119;AVGPOST=0.9984;RSQ=0.9493;ERATE=0.0003;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62328025 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.798;LDAF=0.0145;AVGPOST=0.9894;RSQ=0.7260;ERATE=0.0006;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62328066 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0158;AVGPOST=0.9974;RSQ=0.9301;ERATE=0.0005;THETA=0.0008;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62328149 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0248;AVGPOST=0.9989;RSQ=0.9813;ERATE=0.0005;THETA=0.0008;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 62328153 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0205;AVGPOST=0.9971;RSQ=0.9459;ERATE=0.0003;THETA=0.0004;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 62328189 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0004;AVGPOST=0.9994;RSQ=0.4601;ERATE=0.0003;THETA=0.0007;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62328231 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8608;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62328329 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8441;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62328456 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0090;AVGPOST=0.9976;RSQ=0.8806;ERATE=0.0004;THETA=0.0012;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62328461 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62328473 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0028;AVGPOST=0.9970;RSQ=0.6048;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62328704 . T TG 7212 PASS INDEL;BAVGPOST=0.968;BRSQ=0.902;LDAF=0.1873;AVGPOST=0.9559;RSQ=0.8902;ERATE=0.0091;THETA=0.0005;AC=395;AN=2184 GT:DS:GL:BD 0.18086080 0 1 62328705 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.885;LDAF=0.1753;AVGPOST=0.9559;RSQ=0.8786;ERATE=0.0109;THETA=0.0005;AC=372;AN=2184 GT:DS:GL:BD 0.17032968 0 1 62328778 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2098;AVGPOST=0.9984;RSQ=0.9961;ERATE=0.0003;THETA=0.0007;AC=458;AN=2184 GT:DS:GL:BD 0.20970696 0 1 62328852 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.711;LDAF=0.0108;AVGPOST=0.9914;RSQ=0.6981;ERATE=0.0009;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62328896 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0046;AVGPOST=0.9971;RSQ=0.7412;ERATE=0.0009;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62329088 . AG A 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0029;AVGPOST=0.9973;RSQ=0.6863;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62329206 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0017;AVGPOST=0.9978;RSQ=0.5063;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62329358 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0049;AVGPOST=0.9977;RSQ=0.7936;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62329400 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62329538 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8973;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62329652 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8148;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62329757 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0488;AVGPOST=0.9992;RSQ=0.9949;ERATE=0.0004;THETA=0.0008;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 62329885 rs35853578 AT A 27450 PASS INDEL;BAVGPOST=0.993;BRSQ=0.985;LDAF=0.3284;AVGPOST=0.9828;RSQ=0.9710;ERATE=0.0043;THETA=0.0005;AC=714;AN=2184 GT:DS:GL:BD 0.32692307 0 1 62329993 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0022;AVGPOST=0.9999;RSQ=0.9805;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62330062 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62330080 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9927;AVGPOST=1.0000;RSQ=0.9973;ERATE=0.0003;THETA=0.0005;AC=2168;AN=2184 GT:DS:GL:BD 0.99267399 1 1 62330134 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9862;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62330289 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0065;AVGPOST=0.9998;RSQ=0.9861;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62330337 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62330353 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0773;AVGPOST=1.0000;RSQ=0.9997;ERATE=0.0003;THETA=0.0004;AC=169;AN=2184 GT:DS:GL:BD 0.07738096 0 1 62330374 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0852;AVGPOST=0.9993;RSQ=0.9972;ERATE=0.0003;THETA=0.0005;AC=186;AN=2184 GT:DS:GL:BD 0.08516484 0 1 62330383 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9704;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62330431 . A AT 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6272;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62330471 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62330560 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62330572 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0026;AVGPOST=0.9992;RSQ=0.8607;ERATE=0.0003;THETA=0.0001;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62330642 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.888;LDAF=0.0426;AVGPOST=0.9888;RSQ=0.8976;ERATE=0.0014;THETA=0.0004;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 62330758 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0004;AVGPOST=0.9993;RSQ=0.3968;ERATE=0.0004;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62330832 . T TTG 2660 PASS INDEL;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0206;AVGPOST=0.9952;RSQ=0.8988;ERATE=0.0019;THETA=0.0007;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 62330926 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.631;LDAF=0.0024;AVGPOST=0.9981;RSQ=0.6435;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62330927 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0032;AVGPOST=0.9971;RSQ=0.6003;ERATE=0.0008;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62331009 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.752;LDAF=0.0050;AVGPOST=0.9984;RSQ=0.8512;ERATE=0.0004;THETA=0.0010;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62331094 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.810;LDAF=0.0074;AVGPOST=0.9964;RSQ=0.8143;ERATE=0.0007;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62331133 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62331203 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0055;AVGPOST=0.9959;RSQ=0.7151;ERATE=0.0006;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62331388 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0603;AVGPOST=0.9980;RSQ=0.9898;ERATE=0.0003;THETA=0.0007;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 62331403 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62331462 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0020;AVGPOST=0.9991;RSQ=0.8174;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62331525 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0048;AVGPOST=0.9993;RSQ=0.9337;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62331575 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.6641;AVGPOST=0.9979;RSQ=0.9962;ERATE=0.0004;THETA=0.0009;AC=1450;AN=2184 GT:DS:GL:BD 0.66391939 1 1 62331576 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6398;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62331701 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8012;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62331954 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5027;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62331984 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0030;AVGPOST=0.9992;RSQ=0.8864;ERATE=0.0004;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62332173 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.990;LDAF=0.7545;AVGPOST=0.9966;RSQ=0.9932;ERATE=0.0004;THETA=0.0006;AC=1648;AN=2184 GT:DS:GL:BD 0.75457877 1 1 62332294 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5571;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62332348 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0042;AVGPOST=0.9988;RSQ=0.8820;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62332355 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0075;AVGPOST=0.9997;RSQ=0.9794;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62332376 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62332384 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0127;AVGPOST=0.9984;RSQ=0.9490;ERATE=0.0005;THETA=0.0024;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 62332433 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9316;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62332532 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6827;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62332561 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.965;LDAF=0.0561;AVGPOST=0.9971;RSQ=0.9782;ERATE=0.0003;THETA=0.0009;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 62332817 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0069;AVGPOST=0.9991;RSQ=0.9416;ERATE=0.0004;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62332826 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4660;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62332932 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0670;AVGPOST=0.9981;RSQ=0.9895;ERATE=0.0003;THETA=0.0007;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 62332956 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62332993 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.959;LDAF=0.0453;AVGPOST=0.9925;RSQ=0.9350;ERATE=0.0004;THETA=0.0006;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 62333030 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0833;AVGPOST=0.9991;RSQ=0.9964;ERATE=0.0003;THETA=0.0009;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 62333034 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0060;AVGPOST=0.9993;RSQ=0.9467;ERATE=0.0003;THETA=0.0032;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62333061 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.489;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4968;ERATE=0.0006;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62333110 . AC A 143 PASS INDEL;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0028;AVGPOST=0.9981;RSQ=0.7206;ERATE=0.0004;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62333221 rs10672229 T TAAAC 125131 PASS INDEL;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.9673;AVGPOST=0.9974;RSQ=0.9690;ERATE=0.0006;THETA=0.0014;AC=2114;AN=2184 GT:DS:GL:BD 0.96794873 1 1 62333241 . TA T 1455 PASS INDEL;BAVGPOST=0.994;BRSQ=0.959;LDAF=0.0786;AVGPOST=0.9891;RSQ=0.9417;ERATE=0.0007;THETA=0.0023;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 62333285 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0670;AVGPOST=0.9982;RSQ=0.9884;ERATE=0.0003;THETA=0.0025;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 62333309 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0280;AVGPOST=0.9983;RSQ=0.9768;ERATE=0.0003;THETA=0.0013;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 62333365 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0046;AVGPOST=0.9994;RSQ=0.9461;ERATE=0.0003;THETA=0.0046;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62333438 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1962;AVGPOST=0.9951;RSQ=0.9880;ERATE=0.0003;THETA=0.0012;AC=431;AN=2184 GT:DS:GL:BD 0.19734432 0 1 62333548 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0098;AVGPOST=0.9990;RSQ=0.9543;ERATE=0.0004;THETA=0.0057;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62333622 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.9693;AVGPOST=0.9978;RSQ=0.9746;ERATE=0.0003;THETA=0.0046;AC=2119;AN=2184 GT:DS:GL:BD 0.97023809 1 1 62333830 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0053;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62333928 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9359;ERATE=0.0003;THETA=0.0029;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62333985 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0090;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62333987 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0143;AVGPOST=0.9995;RSQ=0.9840;ERATE=0.0003;THETA=0.0017;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62333989 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9426;ERATE=0.0003;THETA=0.0119;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62334086 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6295;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62334113 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.975;LDAF=0.9253;AVGPOST=0.9937;RSQ=0.9703;ERATE=0.0005;THETA=0.0163;AC=2021;AN=2184 GT:DS:GL:BD 0.92536628 1 1 62334187 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.941;LDAF=0.0090;AVGPOST=0.9989;RSQ=0.9513;ERATE=0.0003;THETA=0.0133;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62334310 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.882;LDAF=0.0155;AVGPOST=0.9931;RSQ=0.8307;ERATE=0.0006;THETA=0.0111;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62334492 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0042;AVGPOST=0.9957;RSQ=0.6021;ERATE=0.0009;THETA=0.0135;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62334522 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.934;LDAF=0.0215;AVGPOST=0.9969;RSQ=0.9421;ERATE=0.0003;THETA=0.0155;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 62334567 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.942;LDAF=0.0281;AVGPOST=0.9959;RSQ=0.9408;ERATE=0.0003;THETA=0.0121;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 62334614 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.922;LDAF=0.1701;AVGPOST=0.9610;RSQ=0.8979;ERATE=0.0016;THETA=0.0201;AC=356;AN=2184 GT:DS:GL:BD 0.16300367 0 1 62334718 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.865;LDAF=0.0204;AVGPOST=0.9922;RSQ=0.8467;ERATE=0.0007;THETA=0.0174;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 62334720 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5627;ERATE=0.0004;THETA=0.0213;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62334767 . AC A 224 PASS INDEL;BAVGPOST=0.958;BRSQ=0.460;LDAF=0.0470;AVGPOST=0.9446;RSQ=0.5226;ERATE=0.0098;THETA=0.0083;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 62334801 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.488;LDAF=0.0097;AVGPOST=0.9894;RSQ=0.5405;ERATE=0.0015;THETA=0.0055;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62334841 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.920;BRSQ=0.446;LDAF=0.0936;AVGPOST=0.8984;RSQ=0.5084;ERATE=0.0031;THETA=0.0073;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 62334842 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.923;BRSQ=0.451;LDAF=0.0859;AVGPOST=0.9080;RSQ=0.5252;ERATE=0.0017;THETA=0.0064;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 62334844 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.536;LDAF=0.0101;AVGPOST=0.9858;RSQ=0.3957;ERATE=0.0013;THETA=0.0107;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62334888 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.371;LDAF=0.0153;AVGPOST=0.9750;RSQ=0.3387;ERATE=0.0013;THETA=0.0025;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62334962 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.797;LDAF=0.0217;AVGPOST=0.9839;RSQ=0.7119;ERATE=0.0010;THETA=0.0067;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62334966 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.549;LDAF=0.0080;AVGPOST=0.9891;RSQ=0.4366;ERATE=0.0008;THETA=0.0120;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62334982 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.607;LDAF=0.0189;AVGPOST=0.9846;RSQ=0.6977;ERATE=0.0016;THETA=0.0122;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62334988 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0055;AVGPOST=0.9950;RSQ=0.6398;ERATE=0.0004;THETA=0.0100;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62334999 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.505;LDAF=0.0119;AVGPOST=0.9881;RSQ=0.6098;ERATE=0.0012;THETA=0.0302;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62335003 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.514;LDAF=0.0047;AVGPOST=0.9929;RSQ=0.3623;ERATE=0.0008;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62335010 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.416;LDAF=0.0015;AVGPOST=0.9978;RSQ=0.3166;ERATE=0.0007;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62335025 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.705;LDAF=0.0056;AVGPOST=0.9944;RSQ=0.6520;ERATE=0.0007;THETA=0.0193;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62335189 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0071;AVGPOST=0.9995;RSQ=0.9669;ERATE=0.0003;THETA=0.0076;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62335517 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6554;ERATE=0.0003;THETA=0.0037;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62335547 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0048;AVGPOST=0.9970;RSQ=0.7626;ERATE=0.0007;THETA=0.0117;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62335568 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.809;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6748;ERATE=0.0003;THETA=0.0145;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62335589 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.783;LDAF=0.0026;AVGPOST=0.9974;RSQ=0.6482;ERATE=0.0004;THETA=0.0057;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62335610 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0057;AVGPOST=0.9993;RSQ=0.9394;ERATE=0.0003;THETA=0.0053;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62335616 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.975;LDAF=0.6586;AVGPOST=0.9709;RSQ=0.9520;ERATE=0.0009;THETA=0.0007;AC=1443;AN=2184 GT:DS:GL:BD 0.66071427 1 1 62335643 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.5195;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62335669 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0062;AVGPOST=0.9973;RSQ=0.8539;ERATE=0.0004;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62335672 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.625;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.5123;ERATE=0.0005;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62335673 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.931;LDAF=0.0278;AVGPOST=0.9955;RSQ=0.9381;ERATE=0.0004;THETA=0.0004;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 62335695 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4882;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62335703 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.862;LDAF=0.0079;AVGPOST=0.9966;RSQ=0.8172;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62335748 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0064;AVGPOST=0.9973;RSQ=0.8564;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62336051 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.767;LDAF=0.0025;AVGPOST=0.9985;RSQ=0.7279;ERATE=0.0011;THETA=0.0030;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62336448 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0039;AVGPOST=0.9991;RSQ=0.9077;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62336528 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.843;LDAF=0.0464;AVGPOST=0.9791;RSQ=0.8362;ERATE=0.0005;THETA=0.0010;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 62336588 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9843;ERATE=0.0003;THETA=0.0018;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62336598 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8771;ERATE=0.0003;THETA=0.0035;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62336634 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62336650 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.718;LDAF=0.0032;AVGPOST=0.9985;RSQ=0.8283;ERATE=0.0004;THETA=0.0089;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62336736 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.951;BRSQ=0.915;LDAF=0.4110;AVGPOST=0.9079;RSQ=0.8611;ERATE=0.0321;THETA=0.0036;AC=888;AN=2184 GT:DS:GL:BD 0.40659341 0 1 62336796 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0488;AVGPOST=0.9924;RSQ=0.9302;ERATE=0.0008;THETA=0.0009;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 62337055 . T TTG 2728 PASS INDEL;BAVGPOST=0.803;BRSQ=0.582;LDAF=0.2723;AVGPOST=0.7952;RSQ=0.5967;ERATE=0.0221;THETA=0.0020;AC=510;AN=2184 GT:DS:GL:BD 0.23351648 0 1 62337075 . G GTA 118 PASS INDEL;BAVGPOST=0.991;BRSQ=0.373;LDAF=0.0352;AVGPOST=0.9415;RSQ=0.3160;ERATE=0.0060;THETA=0.0007;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62337098 . C CAT 934 PASS INDEL;BAVGPOST=0.938;BRSQ=0.426;LDAF=0.0939;AVGPOST=0.8885;RSQ=0.4655;ERATE=0.0101;THETA=0.0022;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 62337630 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0207;AVGPOST=0.9956;RSQ=0.9159;ERATE=0.0006;THETA=0.0045;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 62337764 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5195;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62337768 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6568;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62337788 . CTTTG C 1766 PASS INDEL;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0169;AVGPOST=0.9976;RSQ=0.9459;ERATE=0.0004;THETA=0.0012;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62337806 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9267;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62337807 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4109;AVGPOST=0.9959;RSQ=0.9938;ERATE=0.0004;THETA=0.0003;AC=898;AN=2184 GT:DS:GL:BD 0.41117215 0 1 62337970 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62337980 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.9905;AVGPOST=0.9984;RSQ=0.9322;ERATE=0.0004;THETA=0.0004;AC=2165;AN=2184 GT:DS:GL:BD 0.99130034 1 1 62338037 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8588;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62338043 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.926;LDAF=0.0193;AVGPOST=0.9963;RSQ=0.9265;ERATE=0.0004;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 62338100 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.9010;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62338147 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.9104;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62338275 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7609;ERATE=0.0004;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62338277 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0122;AVGPOST=0.9995;RSQ=0.9867;ERATE=0.0003;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62338670 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.8277;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62338713 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.772;LDAF=0.0039;AVGPOST=0.9957;RSQ=0.5918;ERATE=0.0006;THETA=0.0017;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62338750 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0481;AVGPOST=0.9994;RSQ=0.9938;ERATE=0.0004;THETA=0.0005;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 62338936 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0124;AVGPOST=0.9980;RSQ=0.9282;ERATE=0.0005;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62338992 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.595;LDAF=0.0019;AVGPOST=0.9973;RSQ=0.4589;ERATE=0.0009;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62339038 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.979;LDAF=0.0488;AVGPOST=0.9981;RSQ=0.9824;ERATE=0.0004;THETA=0.0005;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 62339110 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.751;LDAF=0.0026;AVGPOST=0.9964;RSQ=0.4885;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62339137 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0225;AVGPOST=0.9942;RSQ=0.9114;ERATE=0.0009;THETA=0.0010;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 62339160 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.4088;AVGPOST=0.9966;RSQ=0.9952;ERATE=0.0006;THETA=0.0003;AC=893;AN=2184 GT:DS:GL:BD 0.40888280 0 1 62339346 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.765;LDAF=0.0044;AVGPOST=0.9968;RSQ=0.7156;ERATE=0.0005;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62339350 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0188;AVGPOST=0.9985;RSQ=0.9666;ERATE=0.0004;THETA=0.0003;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 62339477 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0030;AVGPOST=0.9980;RSQ=0.7264;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62339492 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0071;AVGPOST=0.9995;RSQ=0.9692;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62339611 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.849;LDAF=0.0034;AVGPOST=0.9985;RSQ=0.7997;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62339675 . A AGT 85 PASS INDEL;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4760;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62339823 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6265;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62339856 . A AT 24 PASS INDEL;BAVGPOST=0.997;BRSQ=0.509;LDAF=0.0066;AVGPOST=0.9947;RSQ=0.6409;ERATE=0.0009;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62339922 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.9874;AVGPOST=0.9985;RSQ=0.9614;ERATE=0.0003;THETA=0.0003;AC=2158;AN=2184 GT:DS:GL:BD 0.98809522 1 1 62339940 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1019;AVGPOST=0.9985;RSQ=0.9934;ERATE=0.0003;THETA=0.0003;AC=223;AN=2184 GT:DS:GL:BD 0.10210623 0 1 62340027 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.984;LDAF=0.3163;AVGPOST=0.9898;RSQ=0.9822;ERATE=0.0014;THETA=0.0002;AC=687;AN=2184 GT:DS:GL:BD 0.31456044 0 1 62340244 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0457;AVGPOST=0.9995;RSQ=0.9943;ERATE=0.0004;THETA=0.0004;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 62340426 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0099;AVGPOST=0.9994;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62340557 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6952;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62340683 . G GT 32 PASS INDEL;BAVGPOST=0.999;BRSQ=0.830;LDAF=0.0025;AVGPOST=0.9981;RSQ=0.6872;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62340726 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7335;AVGPOST=0.9997;RSQ=0.9992;ERATE=0.0003;THETA=0.0002;AC=1602;AN=2184 GT:DS:GL:BD 0.73351645 1 1 62340855 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3218;AVGPOST=0.9998;RSQ=0.9995;ERATE=0.0003;THETA=0.0001;AC=702;AN=2184 GT:DS:GL:BD 0.32142857 0 1 62340895 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62340960 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62341032 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62341087 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62341157 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7624;AVGPOST=0.9999;RSQ=0.9998;ERATE=0.0003;THETA=0.0006;AC=1665;AN=2184 GT:DS:GL:BD 0.76236266 1 1 62341364 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0170;AVGPOST=0.9998;RSQ=0.9938;ERATE=0.0003;THETA=0.0002;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 62341379 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6262;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62341708 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0038;AVGPOST=0.9995;RSQ=0.9368;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62341752 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.822;LDAF=0.0047;AVGPOST=0.9978;RSQ=0.8096;ERATE=0.0006;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62341773 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0017;AVGPOST=0.9986;RSQ=0.6686;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62341781 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0025;AVGPOST=0.9989;RSQ=0.8529;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62341864 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4049;AVGPOST=0.9962;RSQ=0.9944;ERATE=0.0005;THETA=0.0003;AC=885;AN=2184 GT:DS:GL:BD 0.40521979 0 1 62341879 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.9877;AVGPOST=0.9992;RSQ=0.9701;ERATE=0.0006;THETA=0.0005;AC=2158;AN=2184 GT:DS:GL:BD 0.98809522 1 1 62341928 . G GA 1026 PASS INDEL;BAVGPOST=0.987;BRSQ=0.789;LDAF=0.0340;AVGPOST=0.9749;RSQ=0.7236;ERATE=0.0045;THETA=0.0002;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 62341929 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4254;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62341947 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7182;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62342053 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0274;AVGPOST=0.9987;RSQ=0.9803;ERATE=0.0004;THETA=0.0003;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 62342091 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7044;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62342131 . TA T 143 PASS INDEL;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8020;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62342230 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8352;AVGPOST=0.9984;RSQ=0.9947;ERATE=0.0005;THETA=0.0002;AC=1825;AN=2184 GT:DS:GL:BD 0.83562273 1 1 62342307 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0272;AVGPOST=0.9995;RSQ=0.9932;ERATE=0.0003;THETA=0.0005;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 62342315 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.8342;AVGPOST=0.9975;RSQ=0.9929;ERATE=0.0005;THETA=0.0007;AC=1824;AN=2184 GT:DS:GL:BD 0.83516484 1 1 62342333 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.808;LDAF=0.0105;AVGPOST=0.9952;RSQ=0.8497;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62342394 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4133;AVGPOST=0.9987;RSQ=0.9977;ERATE=0.0004;THETA=0.0004;AC=902;AN=2184 GT:DS:GL:BD 0.41300365 0 1 62342408 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.6205;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62342818 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6466;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62343070 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0074;AVGPOST=0.9987;RSQ=0.9352;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62343073 . AG A 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62343076 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62343128 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6796;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62343194 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.9879;AVGPOST=0.9993;RSQ=0.9747;ERATE=0.0003;THETA=0.0004;AC=2158;AN=2184 GT:DS:GL:BD 0.98809522 1 1 62343272 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62343278 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8749;AVGPOST=0.9982;RSQ=0.9927;ERATE=0.0003;THETA=0.0004;AC=1913;AN=2184 GT:DS:GL:BD 0.87591577 1 1 62343303 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5372;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62343335 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.4818;AVGPOST=0.9976;RSQ=0.9961;ERATE=0.0003;THETA=0.0004;AC=1052;AN=2184 GT:DS:GL:BD 0.48168498 0 1 62343354 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0030;AVGPOST=0.9992;RSQ=0.9036;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62343371 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.7492;AVGPOST=0.9954;RSQ=0.9906;ERATE=0.0006;THETA=0.0005;AC=1638;AN=2184 GT:DS:GL:BD 0.75000000 1 1 62343384 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.8928;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62343413 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.682;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7264;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62343460 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0056;AVGPOST=0.9999;RSQ=0.9881;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62343524 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0457;AVGPOST=0.9995;RSQ=0.9953;ERATE=0.0003;THETA=0.0002;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 62343540 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0002;AVGPOST=0.9997;RSQ=0.0805;ERATE=0.0004;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62343562 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8725;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62343586 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.3999;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62343639 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0179;AVGPOST=0.9986;RSQ=0.9676;ERATE=0.0003;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62343645 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0020;AVGPOST=0.9982;RSQ=0.6578;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62343680 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62343736 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62343916 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7309;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62343926 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0075;AVGPOST=0.9995;RSQ=0.9748;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62343979 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.8801;AVGPOST=0.9994;RSQ=0.9974;ERATE=0.0003;THETA=0.0003;AC=1923;AN=2184 GT:DS:GL:BD 0.88049453 1 1 62344097 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9614;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62344107 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5835;AVGPOST=0.9973;RSQ=0.9950;ERATE=0.0005;THETA=0.0059;AC=1276;AN=2184 GT:DS:GL:BD 0.58424908 1 1 62344351 . A AT 331 PASS INDEL;BAVGPOST=0.951;BRSQ=0.272;LDAF=0.0998;AVGPOST=0.8642;RSQ=0.3976;ERATE=0.0041;THETA=0.0003;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 62344364 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.757;LDAF=0.0059;AVGPOST=0.9941;RSQ=0.6081;ERATE=0.0022;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62344479 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.752;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7297;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62344480 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0040;AVGPOST=0.9983;RSQ=0.8218;ERATE=0.0003;THETA=0.0025;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62344617 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.663;LDAF=0.0120;AVGPOST=0.9899;RSQ=0.6646;ERATE=0.0008;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62344734 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.968;LDAF=0.0267;AVGPOST=0.9973;RSQ=0.9637;ERATE=0.0003;THETA=0.0005;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 62344745 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0111;AVGPOST=0.9991;RSQ=0.9630;ERATE=0.0004;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62344976 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0102;AVGPOST=0.9992;RSQ=0.9675;ERATE=0.0003;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62345228 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0348;AVGPOST=0.9975;RSQ=0.9729;ERATE=0.0004;THETA=0.0006;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 62345267 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3896;AVGPOST=0.9978;RSQ=0.9966;ERATE=0.0003;THETA=0.0003;AC=851;AN=2184 GT:DS:GL:BD 0.38965201 0 1 62345366 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.863;LDAF=0.0060;AVGPOST=0.9983;RSQ=0.8874;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62345394 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.9872;AVGPOST=0.9998;RSQ=0.9939;ERATE=0.0003;THETA=0.0005;AC=2156;AN=2184 GT:DS:GL:BD 0.98717946 1 1 62345452 . AT A 23 PASS INDEL;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5792;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62345486 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9253;AVGPOST=0.9982;RSQ=0.9902;ERATE=0.0004;THETA=0.0003;AC=2023;AN=2184 GT:DS:GL:BD 0.92628205 1 1 62345533 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.892;LDAF=0.9791;AVGPOST=0.9855;RSQ=0.7236;ERATE=0.0019;THETA=0.0004;AC=2150;AN=2184 GT:DS:GL:BD 0.98443222 1 1 62345650 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0426;AVGPOST=0.9984;RSQ=0.9817;ERATE=0.0003;THETA=0.0006;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 62345659 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0029;AVGPOST=0.9975;RSQ=0.6126;ERATE=0.0009;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62345666 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0043;AVGPOST=0.9969;RSQ=0.7383;ERATE=0.0007;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62345743 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0182;AVGPOST=0.9961;RSQ=0.9321;ERATE=0.0004;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62345745 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0028;AVGPOST=0.9961;RSQ=0.4877;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62345755 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0086;AVGPOST=0.9990;RSQ=0.9462;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62345791 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0029;AVGPOST=0.9988;RSQ=0.8136;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62345818 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9996;RSQ=0.9746;ERATE=0.0004;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62345844 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5109;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62345901 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6451;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62345961 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.9249;AVGPOST=0.9995;RSQ=0.9963;ERATE=0.0004;THETA=0.0005;AC=2021;AN=2184 GT:DS:GL:BD 0.92536628 1 1 62346093 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0021;AVGPOST=0.9976;RSQ=0.5928;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62346147 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7702;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62346188 . CT C 178 PASS INDEL;BAVGPOST=0.999;BRSQ=0.846;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8552;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62346215 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0073;AVGPOST=0.9995;RSQ=0.9724;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62346241 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8894;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62346244 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0027;AVGPOST=0.9988;RSQ=0.8006;ERATE=0.0006;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62346284 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0019;AVGPOST=0.9993;RSQ=0.8459;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62346291 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.847;LDAF=0.0037;AVGPOST=0.9985;RSQ=0.8214;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62346341 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62346401 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.9249;AVGPOST=0.9995;RSQ=0.9967;ERATE=0.0003;THETA=0.0005;AC=2021;AN=2184 GT:DS:GL:BD 0.92536628 1 1 62346537 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0386;AVGPOST=0.9974;RSQ=0.9701;ERATE=0.0007;THETA=0.0002;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 62346624 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.788;LDAF=0.0047;AVGPOST=0.9982;RSQ=0.8288;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62346752 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4486;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62346836 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62346846 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0035;AVGPOST=0.9992;RSQ=0.8900;ERATE=0.0009;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62346938 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.6992;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62347054 rs112278526 T TCCATGAAC 9444 PASS INDEL;BAVGPOST=0.972;BRSQ=0.814;LDAF=0.0878;AVGPOST=0.9862;RSQ=0.9316;ERATE=0.0010;THETA=0.0002;AC=197;AN=2184 GT:DS:GL:BD 0.09020147 0 1 62347082 . T TA 20627 PASS INDEL;BAVGPOST=0.972;BRSQ=0.953;LDAF=0.3767;AVGPOST=0.9558;RSQ=0.9388;ERATE=0.0068;THETA=0.0004;AC=829;AN=2184 GT:DS:GL:BD 0.37957877 0 1 62347114 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.958;LDAF=0.0896;AVGPOST=0.9957;RSQ=0.9762;ERATE=0.0004;THETA=0.0003;AC=196;AN=2184 GT:DS:GL:BD 0.08974359 0 1 62347120 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0060;AVGPOST=0.9968;RSQ=0.8065;ERATE=0.0005;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62347240 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.472;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.6956;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62347251 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.806;LDAF=0.0026;AVGPOST=0.9980;RSQ=0.6787;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62347271 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.6723;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62347280 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.921;LDAF=0.8753;AVGPOST=0.9581;RSQ=0.8489;ERATE=0.0073;THETA=0.0012;AC=1944;AN=2184 GT:DS:GL:BD 0.89010990 1 1 62347373 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0032;AVGPOST=0.9964;RSQ=0.5840;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62347484 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6434;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62347515 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5440;ERATE=0.0007;THETA=0.0040;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62347553 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0020;AVGPOST=0.9990;RSQ=0.7764;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62347554 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0025;AVGPOST=0.9990;RSQ=0.8191;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62347601 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0050;AVGPOST=0.9986;RSQ=0.8990;ERATE=0.0003;THETA=0.0012;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62347627 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.902;LDAF=0.0430;AVGPOST=0.9910;RSQ=0.9192;ERATE=0.0004;THETA=0.0013;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 62347657 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.990;LDAF=0.3937;AVGPOST=0.9921;RSQ=0.9891;ERATE=0.0005;THETA=0.0023;AC=861;AN=2184 GT:DS:GL:BD 0.39423078 0 1 62347736 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.716;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8481;ERATE=0.0004;THETA=0.0020;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62347788 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0361;AVGPOST=0.9990;RSQ=0.9870;ERATE=0.0004;THETA=0.0007;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 62347819 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.984;LDAF=0.0788;AVGPOST=0.9978;RSQ=0.9862;ERATE=0.0004;THETA=0.0003;AC=171;AN=2184 GT:DS:GL:BD 0.07829671 0 1 62347844 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.0375;AVGPOST=0.9988;RSQ=0.9862;ERATE=0.0003;THETA=0.0004;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 62347976 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.9078;AVGPOST=0.9984;RSQ=0.9920;ERATE=0.0005;THETA=0.0008;AC=1983;AN=2184 GT:DS:GL:BD 0.90796703 1 1 62348033 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5611;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62348088 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6936;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62348141 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0082;AVGPOST=0.9992;RSQ=0.9583;ERATE=0.0006;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62348351 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.774;LDAF=0.0021;AVGPOST=0.9980;RSQ=0.6518;ERATE=0.0005;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62348471 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0050;AVGPOST=0.9984;RSQ=0.8941;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62348486 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0438;AVGPOST=0.9968;RSQ=0.9734;ERATE=0.0004;THETA=0.0012;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 62348555 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7496;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62348568 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0098;AVGPOST=0.9990;RSQ=0.9578;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62348690 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.824;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8592;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62348698 . CAT C 54 PASS INDEL;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7890;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62348750 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0027;AVGPOST=0.9980;RSQ=0.6779;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62348783 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6594;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62348863 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0083;AVGPOST=0.9988;RSQ=0.9410;ERATE=0.0005;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62349006 . AT A 921 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0077;AVGPOST=0.9991;RSQ=0.9457;ERATE=0.0003;THETA=0.0016;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62349082 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0036;AVGPOST=0.9992;RSQ=0.9069;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62349158 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5756;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62349309 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.862;LDAF=0.0090;AVGPOST=0.9962;RSQ=0.8325;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62349358 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.658;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.3991;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62349375 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.866;LDAF=0.9816;AVGPOST=0.9904;RSQ=0.7984;ERATE=0.0015;THETA=0.0007;AC=2150;AN=2184 GT:DS:GL:BD 0.98443222 1 1 62349387 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.866;LDAF=0.9804;AVGPOST=0.9881;RSQ=0.7498;ERATE=0.0013;THETA=0.0004;AC=2150;AN=2184 GT:DS:GL:BD 0.98443222 1 1 62349472 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.978;LDAF=0.9028;AVGPOST=0.9925;RSQ=0.9642;ERATE=0.0009;THETA=0.0005;AC=1976;AN=2184 GT:DS:GL:BD 0.90476191 1 1 62349588 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6827;ERATE=0.0011;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62349634 . A AT 53 PASS INDEL;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5599;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62349742 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7725;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62349746 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=1.0000;RSQ=0.9968;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62349747 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9351;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62349755 . T TG 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7845;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62349789 . AT A 58 PASS INDEL;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0048;AVGPOST=0.9971;RSQ=0.7588;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62349820 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0174;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62349836 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62349842 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62349880 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62350016 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62350118 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0348;AVGPOST=0.9995;RSQ=0.9938;ERATE=0.0004;THETA=0.0004;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 62350455 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62350679 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9996;RSQ=0.9622;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62350694 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6933;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62350892 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.0839;AVGPOST=0.9927;RSQ=0.9594;ERATE=0.0010;THETA=0.0004;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 62350947 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0303;AVGPOST=0.9922;RSQ=0.8994;ERATE=0.0006;THETA=0.0004;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 62351019 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.936;LDAF=0.5382;AVGPOST=0.9694;RSQ=0.9505;ERATE=0.0029;THETA=0.0003;AC=1186;AN=2184 GT:DS:GL:BD 0.54304028 1 1 62351575 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0086;AVGPOST=0.9983;RSQ=0.9321;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62351600 . G GA 563 PASS INDEL;BAVGPOST=0.964;BRSQ=0.555;LDAF=0.0569;AVGPOST=0.9632;RSQ=0.7680;ERATE=0.0012;THETA=0.0003;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 62351615 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.719;LDAF=0.0076;AVGPOST=0.9946;RSQ=0.7240;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62351709 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0091;AVGPOST=0.9987;RSQ=0.9406;ERATE=0.0004;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62351710 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0089;AVGPOST=0.9984;RSQ=0.9350;ERATE=0.0004;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62351732 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.677;LDAF=0.0030;AVGPOST=0.9968;RSQ=0.6320;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62351799 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.852;LDAF=0.9843;AVGPOST=0.9940;RSQ=0.8522;ERATE=0.0009;THETA=0.0010;AC=2154;AN=2184 GT:DS:GL:BD 0.98626375 1 1 62351893 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8040;AVGPOST=0.9973;RSQ=0.9930;ERATE=0.0005;THETA=0.0004;AC=1757;AN=2184 GT:DS:GL:BD 0.80448717 1 1 62351906 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0023;AVGPOST=0.9976;RSQ=0.6230;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62352073 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8315;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62352177 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7856;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62352178 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.8254;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62352249 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.655;LDAF=0.0028;AVGPOST=0.9953;RSQ=0.3390;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62352308 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.6571;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62352374 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.616;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.9030;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62352419 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.484;LDAF=0.0022;AVGPOST=0.9969;RSQ=0.4797;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62352425 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.718;LDAF=0.0056;AVGPOST=0.9954;RSQ=0.6403;ERATE=0.0008;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62352468 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.968;LDAF=0.0274;AVGPOST=0.9962;RSQ=0.9448;ERATE=0.0005;THETA=0.0006;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 62352471 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.838;BRSQ=0.513;LDAF=0.1867;AVGPOST=0.8531;RSQ=0.6807;ERATE=0.0052;THETA=0.0005;AC=382;AN=2184 GT:DS:GL:BD 0.17490843 0 1 62352479 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.851;BRSQ=0.483;LDAF=0.1501;AVGPOST=0.8748;RSQ=0.6786;ERATE=0.0008;THETA=0.0005;AC=290;AN=2184 GT:DS:GL:BD 0.13278389 0 1 62352491 rs113102456 CA C 20209 PASS INDEL;BAVGPOST=0.832;BRSQ=0.368;LDAF=0.7887;AVGPOST=0.7760;RSQ=0.4893;ERATE=0.0263;THETA=0.0005;AC=1828;AN=2184 GT:DS:GL:BD 0.83699632 1 1 62352591 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.9900;AVGPOST=0.9979;RSQ=0.9254;ERATE=0.0004;THETA=0.0009;AC=2163;AN=2184 GT:DS:GL:BD 0.99038464 1 1 62352644 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6850;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62352708 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.9878;AVGPOST=0.9994;RSQ=0.9779;ERATE=0.0004;THETA=0.0004;AC=2158;AN=2184 GT:DS:GL:BD 0.98809522 1 1 62352716 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7652;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62352750 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0446;AVGPOST=0.9970;RSQ=0.9745;ERATE=0.0005;THETA=0.0003;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 62352870 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1026;AVGPOST=0.9993;RSQ=0.9965;ERATE=0.0004;THETA=0.0002;AC=224;AN=2184 GT:DS:GL:BD 0.10256410 0 1 62352925 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.6014;AVGPOST=0.9957;RSQ=0.9924;ERATE=0.0007;THETA=0.0002;AC=1312;AN=2184 GT:DS:GL:BD 0.60073262 1 1 62352948 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.9880;AVGPOST=0.9996;RSQ=0.9846;ERATE=0.0004;THETA=0.0004;AC=2158;AN=2184 GT:DS:GL:BD 0.98809522 1 1 62352983 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0438;AVGPOST=0.9980;RSQ=0.9856;ERATE=0.0003;THETA=0.0002;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 62352993 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0004;AVGPOST=0.9995;RSQ=0.5285;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62353035 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1024;AVGPOST=0.9998;RSQ=0.9988;ERATE=0.0003;THETA=0.0003;AC=224;AN=2184 GT:DS:GL:BD 0.10256410 0 1 62353147 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9890;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62353220 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3431;AVGPOST=0.9987;RSQ=0.9975;ERATE=0.0004;THETA=0.0011;AC=751;AN=2184 GT:DS:GL:BD 0.34386447 0 1 62353241 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.915;LDAF=0.0258;AVGPOST=0.9956;RSQ=0.9294;ERATE=0.0006;THETA=0.0005;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 62353442 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62353463 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62353464 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62353709 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0178;AVGPOST=0.9991;RSQ=0.9787;ERATE=0.0003;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62353720 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.812;LDAF=0.0038;AVGPOST=0.9984;RSQ=0.8364;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62353766 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6468;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62353851 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0121;AVGPOST=0.9986;RSQ=0.9629;ERATE=0.0004;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 62354003 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.758;LDAF=0.0025;AVGPOST=0.9983;RSQ=0.6944;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62354005 . G GT 99 PASS INDEL;BAVGPOST=1.000;BRSQ=0.781;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6902;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62354056 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.876;LDAF=0.0222;AVGPOST=0.9955;RSQ=0.9270;ERATE=0.0005;THETA=0.0004;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 62354108 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0359;AVGPOST=0.9995;RSQ=0.9932;ERATE=0.0003;THETA=0.0006;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 62354142 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2545;AVGPOST=0.9976;RSQ=0.9951;ERATE=0.0004;THETA=0.0003;AC=558;AN=2184 GT:DS:GL:BD 0.25549451 0 1 62354149 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6100;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62354254 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4499;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62354507 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62354568 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62354746 . CAG C 23 PASS INDEL;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4347;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62354847 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7328;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62354888 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0174;AVGPOST=0.9999;RSQ=0.9975;ERATE=0.0003;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62354892 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0696;AVGPOST=0.9989;RSQ=0.9924;ERATE=0.0005;THETA=0.0018;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 62354893 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2543;AVGPOST=0.9992;RSQ=0.9984;ERATE=0.0003;THETA=0.0009;AC=556;AN=2184 GT:DS:GL:BD 0.25457877 0 1 62354907 . AG A 66 PASS INDEL;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6739;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62354972 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0177;AVGPOST=0.9993;RSQ=0.9820;ERATE=0.0004;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62355020 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0853;AVGPOST=0.9993;RSQ=0.9961;ERATE=0.0003;THETA=0.0003;AC=187;AN=2184 GT:DS:GL:BD 0.08562271 0 1 62355025 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0119;AVGPOST=0.9999;RSQ=0.9968;ERATE=0.0003;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62355105 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0313;AVGPOST=0.9981;RSQ=0.9766;ERATE=0.0003;THETA=0.0003;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 62355573 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6777;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62355587 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62355646 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0024;AVGPOST=0.9991;RSQ=0.8373;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62355652 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8346;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62355656 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0846;AVGPOST=0.9988;RSQ=0.9946;ERATE=0.0003;THETA=0.0004;AC=184;AN=2184 GT:DS:GL:BD 0.08424909 0 1 62355752 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0174;AVGPOST=0.9999;RSQ=0.9975;ERATE=0.0003;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62355761 . CT C 46 PASS INDEL;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0022;AVGPOST=0.9980;RSQ=0.6648;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62355783 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0068;AVGPOST=0.9992;RSQ=0.9650;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62355876 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.797;LDAF=0.0020;AVGPOST=0.9978;RSQ=0.5967;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62356163 . G GT 60 PASS INDEL;BAVGPOST=0.984;BRSQ=0.544;LDAF=0.0218;AVGPOST=0.9707;RSQ=0.4787;ERATE=0.0082;THETA=0.0002;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 62356172 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.894;LDAF=0.0093;AVGPOST=0.9964;RSQ=0.8542;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62356397 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5596;AVGPOST=0.9978;RSQ=0.9960;ERATE=0.0009;THETA=0.0007;AC=1221;AN=2184 GT:DS:GL:BD 0.55906594 1 1 62356477 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.987;LDAF=0.1718;AVGPOST=0.9913;RSQ=0.9820;ERATE=0.0004;THETA=0.0006;AC=371;AN=2184 GT:DS:GL:BD 0.16987179 0 1 62356566 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62356590 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6016;AVGPOST=0.9976;RSQ=0.9956;ERATE=0.0005;THETA=0.0008;AC=1313;AN=2184 GT:DS:GL:BD 0.60119045 1 1 62356598 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62356819 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0039;AVGPOST=0.9990;RSQ=0.9113;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62356836 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9066;AVGPOST=0.9992;RSQ=0.9956;ERATE=0.0004;THETA=0.0004;AC=1980;AN=2184 GT:DS:GL:BD 0.90659338 1 1 62356920 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8255;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62356931 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7770;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62356960 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0813;AVGPOST=0.9988;RSQ=0.9938;ERATE=0.0003;THETA=0.0004;AC=177;AN=2184 GT:DS:GL:BD 0.08104396 0 1 62357089 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9879;AVGPOST=0.9995;RSQ=0.9797;ERATE=0.0004;THETA=0.0005;AC=2158;AN=2184 GT:DS:GL:BD 0.98809522 1 1 62357188 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62357229 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6915;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62357252 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0056;AVGPOST=0.9999;RSQ=0.9881;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62357264 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62357287 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0469;AVGPOST=0.9997;RSQ=0.9971;ERATE=0.0003;THETA=0.0002;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 62357407 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7437;AVGPOST=0.9987;RSQ=0.9970;ERATE=0.0007;THETA=0.0005;AC=1625;AN=2184 GT:DS:GL:BD 0.74404764 1 1 62357421 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0064;AVGPOST=0.9981;RSQ=0.8837;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62357519 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9804;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62357564 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0045;AVGPOST=0.9991;RSQ=0.9047;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62357641 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=0.9991;RSQ=0.9423;ERATE=0.0004;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62357771 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3465;AVGPOST=0.9984;RSQ=0.9971;ERATE=0.0005;THETA=0.0005;AC=756;AN=2184 GT:DS:GL:BD 0.34615386 0 1 62357958 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62358086 . T TA 3202 PASS INDEL;BAVGPOST=0.995;BRSQ=0.934;LDAF=0.0374;AVGPOST=0.9974;RSQ=0.9733;ERATE=0.0005;THETA=0.0004;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 62358153 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9878;AVGPOST=0.9992;RSQ=0.9705;ERATE=0.0003;THETA=0.0005;AC=2158;AN=2184 GT:DS:GL:BD 0.98809522 1 1 62358166 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0026;AVGPOST=0.9992;RSQ=0.8510;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62358268 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7437;AVGPOST=0.9992;RSQ=0.9982;ERATE=0.0003;THETA=0.0008;AC=1625;AN=2184 GT:DS:GL:BD 0.74404764 1 1 62358303 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9878;AVGPOST=0.9995;RSQ=0.9800;ERATE=0.0004;THETA=0.0005;AC=2158;AN=2184 GT:DS:GL:BD 0.98809522 1 1 62358352 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.799;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62358390 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2445;AVGPOST=0.9981;RSQ=0.9956;ERATE=0.0006;THETA=0.0005;AC=533;AN=2184 GT:DS:GL:BD 0.24404761 0 1 62358513 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7921;ERATE=0.0003;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62358595 rs67574342 CTGAT C 2310 PASS INDEL;BAVGPOST=0.998;BRSQ=0.940;LDAF=0.0178;AVGPOST=0.9989;RSQ=0.9758;ERATE=0.0003;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62358662 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.7424;AVGPOST=0.9991;RSQ=0.9979;ERATE=0.0004;THETA=0.0002;AC=1622;AN=2184 GT:DS:GL:BD 0.74267399 1 1 62358672 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5535;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62358730 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.2593;AVGPOST=0.9915;RSQ=0.9822;ERATE=0.0027;THETA=0.0010;AC=564;AN=2184 GT:DS:GL:BD 0.25824177 0 1 62358870 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2572;AVGPOST=0.9975;RSQ=0.9952;ERATE=0.0006;THETA=0.0003;AC=560;AN=2184 GT:DS:GL:BD 0.25641027 0 1 62358875 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7879;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62358880 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0124;AVGPOST=0.9990;RSQ=0.9650;ERATE=0.0005;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62358913 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0367;AVGPOST=0.9989;RSQ=0.9877;ERATE=0.0003;THETA=0.0003;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 62358981 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62359006 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.622;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5803;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62359013 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62359129 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0161;AVGPOST=0.9978;RSQ=0.9469;ERATE=0.0005;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62359171 . TTC T 209 PASS INDEL;BAVGPOST=0.925;BRSQ=0.391;LDAF=0.0777;AVGPOST=0.9120;RSQ=0.5364;ERATE=0.0068;THETA=0.0019;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 62359201 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.756;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.4715;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62359280 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0089;AVGPOST=0.9980;RSQ=0.9110;ERATE=0.0004;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62359468 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0174;AVGPOST=0.9999;RSQ=0.9965;ERATE=0.0003;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62359477 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.2576;AVGPOST=0.9983;RSQ=0.9963;ERATE=0.0004;THETA=0.0007;AC=563;AN=2184 GT:DS:GL:BD 0.25778389 0 1 62359494 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5311;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62359561 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.2579;AVGPOST=0.9976;RSQ=0.9947;ERATE=0.0008;THETA=0.0004;AC=562;AN=2184 GT:DS:GL:BD 0.25732601 0 1 62359671 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.970;LDAF=0.8960;AVGPOST=0.9961;RSQ=0.9815;ERATE=0.0007;THETA=0.0006;AC=1960;AN=2184 GT:DS:GL:BD 0.89743590 1 1 62359697 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.934;LDAF=0.0197;AVGPOST=0.9964;RSQ=0.9306;ERATE=0.0008;THETA=0.0004;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 62359710 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0125;AVGPOST=0.9982;RSQ=0.9425;ERATE=0.0004;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62359756 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.781;LDAF=0.0782;AVGPOST=0.9932;RSQ=0.9614;ERATE=0.0007;THETA=0.0005;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 62359782 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.957;BRSQ=0.891;LDAF=0.2501;AVGPOST=0.9524;RSQ=0.9003;ERATE=0.0049;THETA=0.0004;AC=550;AN=2184 GT:DS:GL:BD 0.25183150 0 1 62359787 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.917;LDAF=0.8699;AVGPOST=0.9670;RSQ=0.8945;ERATE=0.0024;THETA=0.0002;AC=1907;AN=2184 GT:DS:GL:BD 0.87316847 1 1 62359873 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.900;LDAF=0.0432;AVGPOST=0.9976;RSQ=0.9781;ERATE=0.0003;THETA=0.0005;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 62359936 . A AC 1360 PASS INDEL;BAVGPOST=0.915;BRSQ=0.700;LDAF=0.1574;AVGPOST=0.9292;RSQ=0.8118;ERATE=0.0068;THETA=0.0003;AC=343;AN=2184 GT:DS:GL:BD 0.15705128 0 1 62359939 . A AC 1093 PASS INDEL;BAVGPOST=0.967;BRSQ=0.800;LDAF=0.0989;AVGPOST=0.9788;RSQ=0.9132;ERATE=0.0007;THETA=0.0003;AC=224;AN=2184 GT:DS:GL:BD 0.10256410 0 1 62359952 . A AC 2069 PASS INDEL;BAVGPOST=0.998;BRSQ=0.934;LDAF=0.0173;AVGPOST=0.9984;RSQ=0.9600;ERATE=0.0004;THETA=0.0002;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62359986 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.8380;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62360098 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.989;LDAF=0.2576;AVGPOST=0.9967;RSQ=0.9927;ERATE=0.0010;THETA=0.0002;AC=562;AN=2184 GT:DS:GL:BD 0.25732601 0 1 62360134 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0136;AVGPOST=0.9981;RSQ=0.9469;ERATE=0.0004;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 62360287 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6409;AVGPOST=0.9987;RSQ=0.9979;ERATE=0.0004;THETA=0.0005;AC=1399;AN=2184 GT:DS:GL:BD 0.64056778 1 1 62360363 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62360449 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.780;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7912;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62360618 . GATGAGGAATTT G 63764 PASS INDEL;BAVGPOST=0.945;BRSQ=0.879;LDAF=0.2247;AVGPOST=0.9615;RSQ=0.9285;ERATE=0.0004;THETA=0.0005;AC=498;AN=2184 GT:DS:GL:BD 0.22802198 0 1 62360826 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5794;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62360843 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.709;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4959;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62360888 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0032;AVGPOST=0.9995;RSQ=0.9295;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62360981 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.6414;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0003;THETA=0.0003;AC=1400;AN=2184 GT:DS:GL:BD 0.64102566 1 1 62360982 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7092;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62361000 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6413;AVGPOST=0.9995;RSQ=0.9991;ERATE=0.0003;THETA=0.0009;AC=1400;AN=2184 GT:DS:GL:BD 0.64102566 1 1 62361133 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.8911;AVGPOST=0.9993;RSQ=0.9969;ERATE=0.0003;THETA=0.0003;AC=1946;AN=2184 GT:DS:GL:BD 0.89102566 1 1 62361162 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6408;AVGPOST=0.9973;RSQ=0.9950;ERATE=0.0005;THETA=0.0006;AC=1401;AN=2184 GT:DS:GL:BD 0.64148355 1 1 62361163 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0469;AVGPOST=0.9974;RSQ=0.9749;ERATE=0.0005;THETA=0.0003;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 62361270 rs35367865 TG T 1190 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0120;AVGPOST=0.9996;RSQ=0.9846;ERATE=0.0003;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62361392 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6415;AVGPOST=0.9988;RSQ=0.9979;ERATE=0.0005;THETA=0.0008;AC=1401;AN=2184 GT:DS:GL:BD 0.64148355 1 1 62361441 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.840;LDAF=0.0122;AVGPOST=0.9985;RSQ=0.9543;ERATE=0.0004;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62361541 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0175;AVGPOST=0.9997;RSQ=0.9915;ERATE=0.0003;THETA=0.0002;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62361565 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.7512;AVGPOST=0.9952;RSQ=0.9894;ERATE=0.0004;THETA=0.0004;AC=1643;AN=2184 GT:DS:GL:BD 0.75228935 1 1 62361589 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.600;LDAF=0.0097;AVGPOST=0.9934;RSQ=0.7381;ERATE=0.0007;THETA=0.0010;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62361643 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.5621;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62361691 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0801;AVGPOST=0.9970;RSQ=0.9830;ERATE=0.0003;THETA=0.0019;AC=175;AN=2184 GT:DS:GL:BD 0.08012821 0 1 62361757 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.985;LDAF=0.6353;AVGPOST=0.9792;RSQ=0.9663;ERATE=0.0053;THETA=0.0003;AC=1396;AN=2184 GT:DS:GL:BD 0.63919413 1 1 62361799 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.787;LDAF=0.0020;AVGPOST=0.9993;RSQ=0.8311;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62361870 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6528;AVGPOST=0.9983;RSQ=0.9970;ERATE=0.0004;THETA=0.0006;AC=1427;AN=2184 GT:DS:GL:BD 0.65338826 1 1 62361872 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0082;AVGPOST=0.9982;RSQ=0.9156;ERATE=0.0004;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62361894 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0044;AVGPOST=0.9994;RSQ=0.9364;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62361946 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.773;LDAF=0.0073;AVGPOST=0.9973;RSQ=0.8411;ERATE=0.0006;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62362024 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0109;AVGPOST=0.9997;RSQ=0.9870;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62362099 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62362115 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0035;AVGPOST=0.9991;RSQ=0.9035;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62362152 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7496;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62362160 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6262;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62362173 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6411;AVGPOST=0.9980;RSQ=0.9968;ERATE=0.0004;THETA=0.0013;AC=1400;AN=2184 GT:DS:GL:BD 0.64102566 1 1 62362199 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.6904;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62362257 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6417;AVGPOST=0.9989;RSQ=0.9983;ERATE=0.0004;THETA=0.0007;AC=1401;AN=2184 GT:DS:GL:BD 0.64148355 1 1 62362277 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62362384 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6425;AVGPOST=0.9980;RSQ=0.9963;ERATE=0.0008;THETA=0.0022;AC=1403;AN=2184 GT:DS:GL:BD 0.64239925 1 1 62362405 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.668;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6530;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62362426 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0122;AVGPOST=0.9991;RSQ=0.9708;ERATE=0.0003;THETA=0.0002;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62362505 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.6522;AVGPOST=0.9980;RSQ=0.9965;ERATE=0.0004;THETA=0.0007;AC=1425;AN=2184 GT:DS:GL:BD 0.65247256 1 1 62362642 . GA G 20 PASS INDEL;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6426;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62362652 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0175;AVGPOST=0.9998;RSQ=0.9951;ERATE=0.0003;THETA=0.0002;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62362733 rs66531532 TAAA T 73752 PASS INDEL;BAVGPOST=0.971;BRSQ=0.952;LDAF=0.6398;AVGPOST=0.9961;RSQ=0.9932;ERATE=0.0004;THETA=0.0006;AC=1398;AN=2184 GT:DS:GL:BD 0.64010990 1 1 62362737 . AAAC A 30954 PASS INDEL;BAVGPOST=0.966;BRSQ=0.941;LDAF=0.6299;AVGPOST=0.9774;RSQ=0.9620;ERATE=0.0044;THETA=0.0020;AC=1386;AN=2184 GT:DS:GL:BD 0.63461536 1 1 62362937 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2572;AVGPOST=0.9990;RSQ=0.9977;ERATE=0.0005;THETA=0.0008;AC=562;AN=2184 GT:DS:GL:BD 0.25732601 0 1 62362975 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6947;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62363061 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2575;AVGPOST=0.9994;RSQ=0.9987;ERATE=0.0003;THETA=0.0024;AC=562;AN=2184 GT:DS:GL:BD 0.25732601 0 1 62363106 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7255;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62363177 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5839;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62363231 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8974;AVGPOST=0.9971;RSQ=0.9878;ERATE=0.0005;THETA=0.0012;AC=1960;AN=2184 GT:DS:GL:BD 0.89743590 1 1 62363350 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2576;AVGPOST=0.9990;RSQ=0.9977;ERATE=0.0005;THETA=0.0005;AC=562;AN=2184 GT:DS:GL:BD 0.25732601 0 1 62363374 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5357;ERATE=0.0004;THETA=0.0053;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62363474 . A AG 14860 PASS INDEL;BAVGPOST=0.944;BRSQ=0.904;LDAF=0.5279;AVGPOST=0.9350;RSQ=0.9061;ERATE=0.0098;THETA=0.0004;AC=1182;AN=2184 GT:DS:GL:BD 0.54120880 1 1 62363475 rs77405634 G GA 66865 PASS INDEL;BAVGPOST=0.969;BRSQ=0.951;LDAF=0.5593;AVGPOST=0.9764;RSQ=0.9664;ERATE=0.0006;THETA=0.0004;AC=1225;AN=2184 GT:DS:GL:BD 0.56089741 1 1 62363477 . A AG 14604 PASS INDEL;BAVGPOST=0.949;BRSQ=0.912;LDAF=0.5321;AVGPOST=0.9419;RSQ=0.9151;ERATE=0.0074;THETA=0.0007;AC=1185;AN=2184 GT:DS:GL:BD 0.54258239 1 1 62363510 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.2565;AVGPOST=0.9976;RSQ=0.9953;ERATE=0.0004;THETA=0.0020;AC=560;AN=2184 GT:DS:GL:BD 0.25641027 0 1 62363553 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2575;AVGPOST=0.9975;RSQ=0.9947;ERATE=0.0007;THETA=0.0004;AC=562;AN=2184 GT:DS:GL:BD 0.25732601 0 1 62363754 . T TA 162 PASS INDEL;BAVGPOST=0.999;BRSQ=0.689;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7421;ERATE=0.0004;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62363986 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2569;AVGPOST=0.9980;RSQ=0.9957;ERATE=0.0005;THETA=0.0014;AC=562;AN=2184 GT:DS:GL:BD 0.25732601 0 1 62364058 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2578;AVGPOST=0.9984;RSQ=0.9965;ERATE=0.0003;THETA=0.0036;AC=562;AN=2184 GT:DS:GL:BD 0.25732601 0 1 62364169 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7730;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62364185 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62364284 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2615;AVGPOST=0.9980;RSQ=0.9959;ERATE=0.0005;THETA=0.0011;AC=571;AN=2184 GT:DS:GL:BD 0.26144689 0 1 62364301 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8735;ERATE=0.0005;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62364344 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62364427 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0100;AVGPOST=0.9998;RSQ=0.9897;ERATE=0.0003;THETA=0.0057;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62364487 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0175;AVGPOST=0.9996;RSQ=0.9902;ERATE=0.0003;THETA=0.0036;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62364529 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0035;AVGPOST=0.9997;RSQ=0.9665;ERATE=0.0003;THETA=0.0068;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62364534 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0103;AVGPOST=0.9996;RSQ=0.9808;ERATE=0.0003;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62364706 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2511;AVGPOST=0.9967;RSQ=0.9933;ERATE=0.0005;THETA=0.0085;AC=548;AN=2184 GT:DS:GL:BD 0.25091577 0 1 62364776 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5621;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62364803 . C CG 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.705;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5763;ERATE=0.0004;THETA=0.0046;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62364804 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.2474;AVGPOST=0.9927;RSQ=0.9854;ERATE=0.0004;THETA=0.0118;AC=537;AN=2184 GT:DS:GL:BD 0.24587911 0 1 62364870 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.966;LDAF=0.6001;AVGPOST=0.9785;RSQ=0.9679;ERATE=0.0033;THETA=0.0382;AC=1309;AN=2184 GT:DS:GL:BD 0.59935898 1 1 62364989 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0059;AVGPOST=0.9986;RSQ=0.9121;ERATE=0.0003;THETA=0.0258;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62364990 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.727;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0151;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62365002 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0256;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62365020 . TA T 45 PASS INDEL;BAVGPOST=0.999;BRSQ=0.744;LDAF=0.0025;AVGPOST=0.9968;RSQ=0.4420;ERATE=0.0009;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62365102 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0172;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62365217 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.5520;AVGPOST=0.9947;RSQ=0.9928;ERATE=0.0068;THETA=0.0276;AC=1208;AN=2184 GT:DS:GL:BD 0.55311358 1 1 62365315 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0181;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62365317 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0242;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62365321 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0018;AVGPOST=0.9999;RSQ=0.9768;ERATE=0.0003;THETA=0.0150;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62365335 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0345;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62365348 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.8033;ERATE=0.0003;THETA=0.0284;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62365396 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0105;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62365399 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0112;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62365411 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0073;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0165;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62365427 . A AG 13453 PASS INDEL;BAVGPOST=0.924;BRSQ=0.893;LDAF=0.3933;AVGPOST=0.9276;RSQ=0.9115;ERATE=0.0010;THETA=0.0057;AC=852;AN=2184 GT:DS:GL:BD 0.39010990 0 1 62365428 rs5774578 G GA 58243 PASS INDEL;BAVGPOST=0.925;BRSQ=0.895;LDAF=0.4028;AVGPOST=0.9330;RSQ=0.9208;ERATE=0.0016;THETA=0.0244;AC=866;AN=2184 GT:DS:GL:BD 0.39652014 0 1 62365435 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.0701;AVGPOST=0.9988;RSQ=0.9941;ERATE=0.0005;THETA=0.0171;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 62365461 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1940;AVGPOST=0.9978;RSQ=0.9941;ERATE=0.0054;THETA=0.0254;AC=424;AN=2184 GT:DS:GL:BD 0.19413920 0 1 62365610 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0289;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62365658 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0390;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62365706 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.952;LDAF=0.0146;AVGPOST=0.9985;RSQ=0.9625;ERATE=0.0004;THETA=0.0120;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62365710 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.945;LDAF=0.2713;AVGPOST=0.9759;RSQ=0.9556;ERATE=0.0078;THETA=0.0132;AC=587;AN=2184 GT:DS:GL:BD 0.26877290 0 1 62365803 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.862;LDAF=0.0042;AVGPOST=0.9979;RSQ=0.8008;ERATE=0.0005;THETA=0.0072;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62365822 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8916;ERATE=0.0003;THETA=0.0103;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62365900 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6919;ERATE=0.0003;THETA=0.0051;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62365953 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.806;LDAF=0.0025;AVGPOST=0.9991;RSQ=0.8429;ERATE=0.0004;THETA=0.0106;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62366072 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1269;AVGPOST=0.9947;RSQ=0.9842;ERATE=0.0003;THETA=0.0024;AC=276;AN=2184 GT:DS:GL:BD 0.12637363 0 1 62366251 rs68109996 CTTTCT C 45258 PASS INDEL;BAVGPOST=0.968;BRSQ=0.935;LDAF=0.7176;AVGPOST=0.9349;RSQ=0.8858;ERATE=0.0072;THETA=0.0008;AC=1602;AN=2184 GT:DS:GL:BD 0.73351645 1 1 62366305 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.657;LDAF=0.0066;AVGPOST=0.9938;RSQ=0.6118;ERATE=0.0011;THETA=0.0017;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62366347 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.902;BRSQ=0.811;LDAF=0.6775;AVGPOST=0.8667;RSQ=0.7726;ERATE=0.0095;THETA=0.0109;AC=1556;AN=2184 GT:DS:GL:BD 0.71245420 1 1 62366497 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0099;AVGPOST=0.9924;RSQ=0.6806;ERATE=0.0009;THETA=0.0013;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62366664 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5858;ERATE=0.0004;THETA=0.0041;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62366745 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5545;ERATE=0.0004;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62366821 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.887;LDAF=0.0087;AVGPOST=0.9990;RSQ=0.9513;ERATE=0.0003;THETA=0.0012;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62366878 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.8035;AVGPOST=0.9998;RSQ=0.9994;ERATE=0.0003;THETA=0.0013;AC=1754;AN=2184 GT:DS:GL:BD 0.80311358 1 1 62366979 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62367250 . CTATT C 88 PASS INDEL;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62367365 . CTT C 40 PASS INDEL;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7292;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62367455 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.8701;AVGPOST=0.9991;RSQ=0.9961;ERATE=0.0004;THETA=0.0031;AC=1900;AN=2184 GT:DS:GL:BD 0.86996335 1 1 62367506 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62367590 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.858;LDAF=0.0052;AVGPOST=0.9993;RSQ=0.9388;ERATE=0.0003;THETA=0.0043;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62367606 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62367660 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.832;LDAF=0.0078;AVGPOST=0.9977;RSQ=0.8775;ERATE=0.0003;THETA=0.0024;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62367812 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.7963;AVGPOST=0.9945;RSQ=0.9881;ERATE=0.0012;THETA=0.0014;AC=1738;AN=2184 GT:DS:GL:BD 0.79578757 1 1 62367828 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0061;AVGPOST=0.9974;RSQ=0.8327;ERATE=0.0006;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62367883 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62368137 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.0726;AVGPOST=0.9977;RSQ=0.9870;ERATE=0.0005;THETA=0.0008;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 62368176 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.800;LDAF=0.0032;AVGPOST=0.9989;RSQ=0.8476;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62368185 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.680;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.7264;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62368246 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0032;AVGPOST=0.9981;RSQ=0.7714;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62368267 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0052;AVGPOST=0.9996;RSQ=0.9716;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62368478 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7921;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62368576 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0029;AVGPOST=0.9989;RSQ=0.8569;ERATE=0.0003;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62368583 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7965;AVGPOST=0.9989;RSQ=0.9979;ERATE=0.0003;THETA=0.0020;AC=1738;AN=2184 GT:DS:GL:BD 0.79578757 1 1 62368721 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7299;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62368779 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8845;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62368785 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0024;AVGPOST=0.9991;RSQ=0.8445;ERATE=0.0003;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62368811 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7967;AVGPOST=0.9990;RSQ=0.9979;ERATE=0.0003;THETA=0.0009;AC=1740;AN=2184 GT:DS:GL:BD 0.79670328 1 1 62369025 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.938;LDAF=0.0162;AVGPOST=0.9985;RSQ=0.9661;ERATE=0.0003;THETA=0.0009;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62369314 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0269;AVGPOST=0.9992;RSQ=0.9871;ERATE=0.0003;THETA=0.0006;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 62369344 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7970;AVGPOST=0.9996;RSQ=0.9991;ERATE=0.0003;THETA=0.0002;AC=1740;AN=2184 GT:DS:GL:BD 0.79670328 1 1 62369445 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.969;LDAF=0.7242;AVGPOST=0.9762;RSQ=0.9610;ERATE=0.0048;THETA=0.0003;AC=1598;AN=2184 GT:DS:GL:BD 0.73168498 1 1 62369506 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0089;AVGPOST=0.9954;RSQ=0.8075;ERATE=0.0007;THETA=0.0018;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62369593 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0015;AVGPOST=0.9976;RSQ=0.2888;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62369605 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.715;LDAF=0.0027;AVGPOST=0.9978;RSQ=0.6813;ERATE=0.0004;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62369676 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6579;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62369738 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.980;LDAF=0.2161;AVGPOST=0.9888;RSQ=0.9766;ERATE=0.0005;THETA=0.0014;AC=470;AN=2184 GT:DS:GL:BD 0.21520147 0 1 62369766 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.612;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7440;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62369929 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0106;AVGPOST=0.9991;RSQ=0.9660;ERATE=0.0004;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 62369968 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0041;AVGPOST=0.9992;RSQ=0.9071;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62370022 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62370023 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.717;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7315;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62370198 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.978;LDAF=0.3852;AVGPOST=0.9863;RSQ=0.9787;ERATE=0.0005;THETA=0.0002;AC=837;AN=2184 GT:DS:GL:BD 0.38324177 0 1 62370200 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62370294 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0096;AVGPOST=1.0000;RSQ=0.9979;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62370308 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7220;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62370354 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0032;AVGPOST=0.9994;RSQ=0.9270;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62370394 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0250;AVGPOST=0.9990;RSQ=0.9858;ERATE=0.0003;THETA=0.0007;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 62370575 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8525;ERATE=0.0008;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62370724 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8361;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62370824 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62370856 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62370873 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7946;AVGPOST=0.9993;RSQ=0.9986;ERATE=0.0003;THETA=0.0003;AC=1735;AN=2184 GT:DS:GL:BD 0.79441392 1 1 62370980 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.901;LDAF=0.0155;AVGPOST=0.9962;RSQ=0.9203;ERATE=0.0003;THETA=0.0002;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 62370991 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0072;AVGPOST=0.9964;RSQ=0.8314;ERATE=0.0005;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62371136 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62371167 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.768;LDAF=0.0037;AVGPOST=0.9995;RSQ=0.9459;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62371280 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.8696;AVGPOST=0.9979;RSQ=0.9933;ERATE=0.0004;THETA=0.0003;AC=1900;AN=2184 GT:DS:GL:BD 0.86996335 1 1 62371454 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62371496 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7131;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62371519 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7735;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62371578 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7528;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62371580 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0043;AVGPOST=0.9989;RSQ=0.8878;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62371617 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62372177 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9238;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62372227 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7941;AVGPOST=0.9992;RSQ=0.9982;ERATE=0.0003;THETA=0.0004;AC=1734;AN=2184 GT:DS:GL:BD 0.79395604 1 1 62372694 . TAGTG T 231 PASS INDEL;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7178;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62372773 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0399;AVGPOST=0.9989;RSQ=0.9882;ERATE=0.0004;THETA=0.0005;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 62372792 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.7931;AVGPOST=0.9973;RSQ=0.9948;ERATE=0.0004;THETA=0.0004;AC=1734;AN=2184 GT:DS:GL:BD 0.79395604 1 1 62372818 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0027;AVGPOST=0.9971;RSQ=0.5673;ERATE=0.0007;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62372824 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.849;LDAF=0.0094;AVGPOST=0.9962;RSQ=0.8312;ERATE=0.0005;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62372900 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.982;LDAF=0.2825;AVGPOST=0.9875;RSQ=0.9765;ERATE=0.0038;THETA=0.0009;AC=618;AN=2184 GT:DS:GL:BD 0.28296703 0 1 62372924 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0026;AVGPOST=0.9977;RSQ=0.6605;ERATE=0.0013;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62372981 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8774;ERATE=0.0009;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62373195 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0121;AVGPOST=0.9995;RSQ=0.9831;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62373217 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8626;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62373219 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0722;AVGPOST=0.9980;RSQ=0.9915;ERATE=0.0003;THETA=0.0004;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 62373295 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0096;AVGPOST=0.9998;RSQ=0.9916;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62373433 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6492;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62373470 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0034;AVGPOST=0.9990;RSQ=0.8765;ERATE=0.0007;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62373615 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0034;AVGPOST=0.9988;RSQ=0.8516;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62373622 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.689;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8259;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62373629 . ATTTAC A 431 PASS INDEL;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0053;AVGPOST=0.9970;RSQ=0.7917;ERATE=0.0008;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62373707 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9999;RSQ=0.9942;ERATE=0.0003;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 62373709 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5264;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62373809 . TG T 352 PASS INDEL;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7531;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62373860 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62373900 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62373927 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0013;AVGPOST=0.9999;RSQ=0.9689;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62373929 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62374035 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62374108 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62374119 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62374219 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62374225 . TA T 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.735;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5229;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62374263 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0183;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 62374267 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8744;AVGPOST=0.9996;RSQ=0.9986;ERATE=0.0003;THETA=0.0003;AC=1909;AN=2184 GT:DS:GL:BD 0.87408423 1 1 62374522 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7326;AVGPOST=0.9985;RSQ=0.9974;ERATE=0.0003;THETA=0.0003;AC=1598;AN=2184 GT:DS:GL:BD 0.73168498 1 1 62374554 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8259;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62374643 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62374673 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.6182;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62374766 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0019;AVGPOST=0.9982;RSQ=0.6203;ERATE=0.0005;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62374777 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0032;AVGPOST=0.9967;RSQ=0.6226;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62374787 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0037;AVGPOST=0.9985;RSQ=0.8432;ERATE=0.0006;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62374840 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.971;LDAF=0.0267;AVGPOST=0.9973;RSQ=0.9604;ERATE=0.0006;THETA=0.0008;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 62374897 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.970;LDAF=0.7933;AVGPOST=0.9748;RSQ=0.9455;ERATE=0.0059;THETA=0.0005;AC=1744;AN=2184 GT:DS:GL:BD 0.79853481 1 1 62374910 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5353;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62374944 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0039;AVGPOST=0.9992;RSQ=0.9039;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62375249 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0194;AVGPOST=0.9997;RSQ=0.9926;ERATE=0.0003;THETA=0.0003;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 62375282 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.853;LDAF=0.0069;AVGPOST=0.9987;RSQ=0.9102;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62375503 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7587;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62375540 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.8743;AVGPOST=0.9993;RSQ=0.9973;ERATE=0.0003;THETA=0.0004;AC=1909;AN=2184 GT:DS:GL:BD 0.87408423 1 1 62375570 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.7345;AVGPOST=0.9965;RSQ=0.9943;ERATE=0.0005;THETA=0.0004;AC=1603;AN=2184 GT:DS:GL:BD 0.73397434 1 1 62375613 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7921;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62375628 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7994;AVGPOST=0.9976;RSQ=0.9951;ERATE=0.0004;THETA=0.0004;AC=1745;AN=2184 GT:DS:GL:BD 0.79899269 1 1 62375683 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5786;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62375740 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0017;AVGPOST=0.9978;RSQ=0.5022;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62375746 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6045;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62375756 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6008;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62375853 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0023;AVGPOST=0.9972;RSQ=0.5590;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62375929 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6878;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62375977 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7291;AVGPOST=0.9973;RSQ=0.9954;ERATE=0.0006;THETA=0.0007;AC=1590;AN=2184 GT:DS:GL:BD 0.72802198 1 1 62375991 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.695;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5934;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62376114 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9612;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62376140 . TTGA T 129 PASS INDEL;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0017;AVGPOST=0.9979;RSQ=0.5632;ERATE=0.0003;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62376286 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.802;LDAF=0.0098;AVGPOST=0.9965;RSQ=0.8595;ERATE=0.0003;THETA=0.0008;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62376323 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0036;AVGPOST=0.9995;RSQ=0.9522;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62376361 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.747;LDAF=0.0283;AVGPOST=0.9849;RSQ=0.7955;ERATE=0.0005;THETA=0.0006;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 62376393 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6140;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62376470 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.7969;AVGPOST=0.9971;RSQ=0.9928;ERATE=0.0007;THETA=0.0005;AC=1742;AN=2184 GT:DS:GL:BD 0.79761904 1 1 62376767 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5943;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62376918 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0670;AVGPOST=0.9976;RSQ=0.9875;ERATE=0.0003;THETA=0.0063;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 62376925 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.797;LDAF=0.0031;AVGPOST=0.9981;RSQ=0.7306;ERATE=0.0005;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62376974 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.874;LDAF=0.0343;AVGPOST=0.9934;RSQ=0.9251;ERATE=0.0004;THETA=0.0014;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 62376979 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.737;LDAF=0.0089;AVGPOST=0.9959;RSQ=0.7974;ERATE=0.0005;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62377156 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.977;LDAF=0.3901;AVGPOST=0.9712;RSQ=0.9535;ERATE=0.0014;THETA=0.0013;AC=846;AN=2184 GT:DS:GL:BD 0.38736263 0 1 62377159 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8692;AVGPOST=0.9935;RSQ=0.9792;ERATE=0.0009;THETA=0.0006;AC=1899;AN=2184 GT:DS:GL:BD 0.86950547 1 1 62377171 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.650;LDAF=0.0036;AVGPOST=0.9985;RSQ=0.8276;ERATE=0.0003;THETA=0.0014;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62377365 . TTTTA T 224 PASS INDEL;BAVGPOST=0.959;BRSQ=0.474;LDAF=0.0775;AVGPOST=0.9158;RSQ=0.5409;ERATE=0.0056;THETA=0.0051;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 62377390 . TC T 155 PASS INDEL;BAVGPOST=0.972;BRSQ=0.330;LDAF=0.0609;AVGPOST=0.9133;RSQ=0.3876;ERATE=0.0085;THETA=0.0014;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 62377479 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0045;AVGPOST=0.9962;RSQ=0.6668;ERATE=0.0005;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62377601 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.951;LDAF=0.0103;AVGPOST=0.9964;RSQ=0.8754;ERATE=0.0007;THETA=0.0008;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62377660 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.948;LDAF=0.0522;AVGPOST=0.9914;RSQ=0.9312;ERATE=0.0005;THETA=0.0066;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 62377677 . AAT A 892 PASS INDEL;BAVGPOST=0.981;BRSQ=0.681;LDAF=0.0407;AVGPOST=0.9613;RSQ=0.6380;ERATE=0.0028;THETA=0.0006;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 62377688 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.745;LDAF=0.0072;AVGPOST=0.9925;RSQ=0.6038;ERATE=0.0009;THETA=0.0022;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62377806 . C CT 68 PASS INDEL;BAVGPOST=0.999;BRSQ=0.612;LDAF=0.0023;AVGPOST=0.9963;RSQ=0.3259;ERATE=0.0009;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62377922 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62377991 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.659;LDAF=0.0096;AVGPOST=0.9932;RSQ=0.7306;ERATE=0.0010;THETA=0.0017;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62378004 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.601;LDAF=0.0055;AVGPOST=0.9936;RSQ=0.5672;ERATE=0.0006;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62378031 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.652;LDAF=0.0023;AVGPOST=0.9983;RSQ=0.6722;ERATE=0.0005;THETA=0.0044;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62378128 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.750;LDAF=0.0042;AVGPOST=0.9970;RSQ=0.7130;ERATE=0.0006;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62378291 . TGAAA T 101 PASS INDEL;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0083;AVGPOST=0.9916;RSQ=0.5967;ERATE=0.0012;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62378366 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.675;BRSQ=0.417;LDAF=0.6024;AVGPOST=0.6653;RSQ=0.4239;ERATE=0.0653;THETA=0.0006;AC=1435;AN=2184 GT:DS:GL:BD 0.65705127 1 1 62378432 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.651;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5220;ERATE=0.0004;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62378553 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.680;LDAF=0.0020;AVGPOST=0.9969;RSQ=0.3291;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62378703 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0072;AVGPOST=0.9977;RSQ=0.8799;ERATE=0.0004;THETA=0.0013;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62378871 . T TG 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0019;AVGPOST=0.9985;RSQ=0.6687;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62378882 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.480;LDAF=0.0025;AVGPOST=0.9984;RSQ=0.7379;ERATE=0.0007;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62378885 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6012;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62378929 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0061;AVGPOST=0.9995;RSQ=0.9610;ERATE=0.0003;THETA=0.0022;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62379025 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0039;AVGPOST=0.9981;RSQ=0.8005;ERATE=0.0003;THETA=0.0012;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62379029 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.751;LDAF=0.0048;AVGPOST=0.9968;RSQ=0.7495;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62379117 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0060;AVGPOST=0.9990;RSQ=0.9405;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62379376 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6646;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62379530 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9134;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62379651 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.980;LDAF=0.8457;AVGPOST=0.9932;RSQ=0.9815;ERATE=0.0006;THETA=0.0051;AC=1849;AN=2184 GT:DS:GL:BD 0.84661174 1 1 62379774 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.968;LDAF=0.7198;AVGPOST=0.9834;RSQ=0.9703;ERATE=0.0012;THETA=0.0205;AC=1571;AN=2184 GT:DS:GL:BD 0.71932232 1 1 62379930 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.915;LDAF=0.2369;AVGPOST=0.9704;RSQ=0.9369;ERATE=0.0040;THETA=0.0026;AC=511;AN=2184 GT:DS:GL:BD 0.23397435 0 1 62379963 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.743;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8771;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62379984 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.800;LDAF=0.0095;AVGPOST=0.9966;RSQ=0.8540;ERATE=0.0011;THETA=0.0157;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62379995 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.830;LDAF=0.0040;AVGPOST=0.9981;RSQ=0.7869;ERATE=0.0005;THETA=0.0035;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62380000 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.765;LDAF=0.0031;AVGPOST=0.9990;RSQ=0.8491;ERATE=0.0004;THETA=0.0076;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62380059 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0024;AVGPOST=0.9984;RSQ=0.7098;ERATE=0.0006;THETA=0.0045;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62380115 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0059;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0011;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62380124 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.981;LDAF=0.6614;AVGPOST=0.9920;RSQ=0.9875;ERATE=0.0125;THETA=0.0050;AC=1444;AN=2184 GT:DS:GL:BD 0.66117215 1 1 62380158 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0398;AVGPOST=0.9996;RSQ=0.9956;ERATE=0.0038;THETA=0.0045;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 62380195 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.965;LDAF=0.1416;AVGPOST=0.9910;RSQ=0.9735;ERATE=0.0223;THETA=0.0149;AC=305;AN=2184 GT:DS:GL:BD 0.13965201 0 1 62380223 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.3457;AVGPOST=0.9955;RSQ=0.9936;ERATE=0.0259;THETA=0.0061;AC=755;AN=2184 GT:DS:GL:BD 0.34569597 0 1 62380235 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0068;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62380262 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0043;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62380270 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.7936;AVGPOST=0.9967;RSQ=0.9929;ERATE=0.0162;THETA=0.0103;AC=1734;AN=2184 GT:DS:GL:BD 0.79395604 1 1 62380287 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0192;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0006;THETA=0.0175;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 62380298 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.4867;AVGPOST=0.9972;RSQ=0.9962;ERATE=0.0193;THETA=0.0108;AC=1062;AN=2184 GT:DS:GL:BD 0.48626372 0 1 62380348 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0499;AVGPOST=0.9989;RSQ=0.9929;ERATE=0.0037;THETA=0.0076;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 62380443 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9944;ERATE=0.0003;THETA=0.0164;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62380560 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0079;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62380566 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0099;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62380654 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7029;ERATE=0.0004;THETA=0.0120;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62380658 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.980;LDAF=0.4086;AVGPOST=0.9896;RSQ=0.9868;ERATE=0.0015;THETA=0.0004;AC=889;AN=2184 GT:DS:GL:BD 0.40705130 0 1 62380886 . CTTG C 57 PASS INDEL;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7706;ERATE=0.0005;THETA=0.0090;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62381108 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8893;ERATE=0.0003;THETA=0.0063;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62381161 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0024;AVGPOST=0.9993;RSQ=0.8671;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62381247 . A AT 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.731;LDAF=0.0030;AVGPOST=0.9967;RSQ=0.5881;ERATE=0.0005;THETA=0.0067;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62381348 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.691;LDAF=0.0017;AVGPOST=0.9977;RSQ=0.5018;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62381487 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0562;AVGPOST=0.9929;RSQ=0.9551;ERATE=0.0004;THETA=0.0014;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 62381512 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.583;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5772;ERATE=0.0005;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62381561 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.671;LDAF=0.0035;AVGPOST=0.9972;RSQ=0.6845;ERATE=0.0006;THETA=0.0077;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62381664 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.704;LDAF=0.0044;AVGPOST=0.9987;RSQ=0.8692;ERATE=0.0004;THETA=0.0013;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62382064 . CATATA C 65 PASS INDEL;BAVGPOST=1.000;BRSQ=0.671;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.4703;ERATE=0.0005;THETA=0.0042;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62382281 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4876;ERATE=0.0004;THETA=0.0041;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62382406 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.731;LDAF=0.0027;AVGPOST=0.9959;RSQ=0.5002;ERATE=0.0004;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62382478 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62382479 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0332;AVGPOST=0.9994;RSQ=0.9922;ERATE=0.0003;THETA=0.0008;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 62382538 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.798;LDAF=0.0066;AVGPOST=0.9968;RSQ=0.7928;ERATE=0.0008;THETA=0.0025;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62382543 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1405;AVGPOST=0.9974;RSQ=0.9915;ERATE=0.0005;THETA=0.0048;AC=305;AN=2184 GT:DS:GL:BD 0.13965201 0 1 62382617 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.6469;AVGPOST=0.9919;RSQ=0.9870;ERATE=0.0008;THETA=0.0004;AC=1414;AN=2184 GT:DS:GL:BD 0.64743590 1 1 62382664 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62382782 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0039;AVGPOST=0.9982;RSQ=0.8192;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62382851 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4697;ERATE=0.0004;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62383005 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8193;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62383057 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9998;RSQ=0.9822;ERATE=0.0003;THETA=0.0021;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62383154 rs34048060 AT A 12314 PASS INDEL;BAVGPOST=0.993;BRSQ=0.977;LDAF=0.1447;AVGPOST=0.9932;RSQ=0.9786;ERATE=0.0008;THETA=0.0015;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 62383228 . TAC T 33 PASS INDEL;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0019;AVGPOST=0.9978;RSQ=0.5034;ERATE=0.0006;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62383309 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.929;LDAF=0.0080;AVGPOST=0.9996;RSQ=0.9770;ERATE=0.0003;THETA=0.0013;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62383493 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.926;LDAF=0.0302;AVGPOST=0.9959;RSQ=0.9467;ERATE=0.0005;THETA=0.0015;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 62383792 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6838;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62383801 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.662;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7320;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62383892 . C CTA 48381 PASS INDEL;BAVGPOST=0.960;BRSQ=0.820;LDAF=0.8676;AVGPOST=0.9392;RSQ=0.8018;ERATE=0.0154;THETA=0.0004;AC=1916;AN=2184 GT:DS:GL:BD 0.87728935 1 1 62383893 rs61047358 T TAG 110134 PASS INDEL;BAVGPOST=0.983;BRSQ=0.913;LDAF=0.9124;AVGPOST=0.9893;RSQ=0.9531;ERATE=0.0004;THETA=0.0007;AC=1992;AN=2184 GT:DS:GL:BD 0.91208792 1 1 62383894 . A AGC 23224 PASS INDEL;BAVGPOST=0.973;BRSQ=0.874;LDAF=0.8912;AVGPOST=0.9677;RSQ=0.8784;ERATE=0.0039;THETA=0.0018;AC=1956;AN=2184 GT:DS:GL:BD 0.89560437 1 1 62384123 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0042;AVGPOST=0.9964;RSQ=0.6640;ERATE=0.0006;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62384183 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5725;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62384222 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.674;LDAF=0.0057;AVGPOST=0.9968;RSQ=0.7785;ERATE=0.0004;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62384234 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.822;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7679;ERATE=0.0009;THETA=0.0021;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62384236 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.831;LDAF=0.0026;AVGPOST=0.9982;RSQ=0.7053;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62384377 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0022;AVGPOST=0.9979;RSQ=0.6299;ERATE=0.0006;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62384996 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0168;AVGPOST=0.9990;RSQ=0.9735;ERATE=0.0003;THETA=0.0009;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62385002 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.401;LDAF=0.0069;AVGPOST=0.9872;RSQ=0.2954;ERATE=0.0018;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62385187 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0072;AVGPOST=0.9981;RSQ=0.9070;ERATE=0.0004;THETA=0.0061;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62385195 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9213;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62385221 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0032;AVGPOST=0.9986;RSQ=0.8044;ERATE=0.0006;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62385270 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8705;AVGPOST=0.9963;RSQ=0.9868;ERATE=0.0004;THETA=0.0006;AC=1900;AN=2184 GT:DS:GL:BD 0.86996335 1 1 62385338 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0042;AVGPOST=0.9988;RSQ=0.8785;ERATE=0.0003;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62385351 . TTTTG T 202 PASS INDEL;BAVGPOST=0.998;BRSQ=0.687;LDAF=0.0042;AVGPOST=0.9965;RSQ=0.6637;ERATE=0.0008;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62385363 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4807;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62385506 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0571;AVGPOST=0.9978;RSQ=0.9853;ERATE=0.0004;THETA=0.0004;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 62385657 . AAACT A 39 PASS INDEL;BAVGPOST=1.000;BRSQ=0.694;LDAF=0.0022;AVGPOST=0.9966;RSQ=0.4154;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62385913 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0043;AVGPOST=0.9988;RSQ=0.8948;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62386023 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6795;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62386040 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.613;LDAF=0.0219;AVGPOST=0.9741;RSQ=0.5432;ERATE=0.0068;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 62386085 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.6728;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62386132 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0019;AVGPOST=0.9985;RSQ=0.6439;ERATE=0.0011;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62386183 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8697;AVGPOST=0.9979;RSQ=0.9931;ERATE=0.0003;THETA=0.0003;AC=1900;AN=2184 GT:DS:GL:BD 0.86996335 1 1 62386232 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.830;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8962;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62386308 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0176;AVGPOST=0.9976;RSQ=0.9517;ERATE=0.0004;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62386374 rs71582652 C CT 1322 PASS INDEL;BAVGPOST=0.466;BRSQ=0.111;LDAF=0.4816;AVGPOST=0.6264;RSQ=0.3295;ERATE=0.0432;THETA=0.0007;AC=954;AN=2184 GT:DS:GL:BD 0.43681318 0 1 62386429 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.697;LDAF=0.0160;AVGPOST=0.9952;RSQ=0.8935;ERATE=0.0003;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62386558 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.984;LDAF=0.8684;AVGPOST=0.9809;RSQ=0.9338;ERATE=0.0023;THETA=0.0027;AC=1905;AN=2184 GT:DS:GL:BD 0.87225276 1 1 62386859 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62386903 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.1007;AVGPOST=0.9969;RSQ=0.9890;ERATE=0.0003;THETA=0.0005;AC=220;AN=2184 GT:DS:GL:BD 0.10073260 0 1 62387256 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0004;THETA=0.0038;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62387598 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.983;LDAF=0.8976;AVGPOST=0.9977;RSQ=0.9899;ERATE=0.0003;THETA=0.0004;AC=1961;AN=2184 GT:DS:GL:BD 0.89789379 1 1 62387652 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.925;LDAF=0.2835;AVGPOST=0.9660;RSQ=0.9449;ERATE=0.0031;THETA=0.0063;AC=617;AN=2184 GT:DS:GL:BD 0.28250915 0 1 62387723 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.585;LDAF=0.0028;AVGPOST=0.9974;RSQ=0.6022;ERATE=0.0011;THETA=0.0057;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62387871 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5270;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62388013 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0276;AVGPOST=0.9986;RSQ=0.9809;ERATE=0.0004;THETA=0.0003;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 62388039 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9126;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62388050 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9250;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62388122 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0018;AVGPOST=0.9993;RSQ=0.8520;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62388155 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5300;AVGPOST=0.9959;RSQ=0.9946;ERATE=0.0004;THETA=0.0004;AC=1158;AN=2184 GT:DS:GL:BD 0.53021979 1 1 62388169 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.955;LDAF=0.0219;AVGPOST=0.9986;RSQ=0.9756;ERATE=0.0003;THETA=0.0007;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 62388245 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8921;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62388319 . AGTCACAT A 442 PASS INDEL;BAVGPOST=0.997;BRSQ=0.753;LDAF=0.0051;AVGPOST=0.9986;RSQ=0.8893;ERATE=0.0004;THETA=0.0026;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62388354 . TC T 46 PASS INDEL;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7476;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62388407 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9682;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62388488 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5198;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62388555 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0077;AVGPOST=0.9984;RSQ=0.9253;ERATE=0.0003;THETA=0.0008;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62388615 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0112;AVGPOST=0.9995;RSQ=0.9806;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62388715 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6422;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62388898 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6413;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62388920 . CT C 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.737;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62388983 . C CA 357 PASS INDEL;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0037;AVGPOST=0.9986;RSQ=0.8357;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62388995 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0394;AVGPOST=0.9995;RSQ=0.9951;ERATE=0.0003;THETA=0.0012;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 62389090 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8268;ERATE=0.0003;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62389092 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.586;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7230;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62389115 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62389319 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62389342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0037;AVGPOST=0.9989;RSQ=0.8662;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62389455 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0032;AVGPOST=0.9977;RSQ=0.7250;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62389550 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.724;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6102;ERATE=0.0003;THETA=0.0031;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62389562 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.727;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.5073;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62389788 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.612;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62389869 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0034;AVGPOST=0.9986;RSQ=0.8355;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62390057 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5421;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62390090 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62390214 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.7996;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62390327 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0369;AVGPOST=0.9991;RSQ=0.9913;ERATE=0.0003;THETA=0.0004;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 62390370 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0361;AVGPOST=0.9988;RSQ=0.9872;ERATE=0.0003;THETA=0.0008;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 62390417 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.7347;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62390554 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0089;AVGPOST=0.9995;RSQ=0.9730;ERATE=0.0004;THETA=0.0009;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62390603 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.574;BRSQ=0.252;LDAF=0.6181;AVGPOST=0.6663;RSQ=0.3873;ERATE=0.0394;THETA=0.0007;AC=1471;AN=2184 GT:DS:GL:BD 0.67353481 1 1 62390958 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0389;AVGPOST=0.9955;RSQ=0.9602;ERATE=0.0005;THETA=0.0004;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 62391016 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.822;LDAF=0.0020;AVGPOST=0.9994;RSQ=0.8631;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62391027 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0364;AVGPOST=0.9992;RSQ=0.9919;ERATE=0.0003;THETA=0.0007;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 62391043 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0056;AVGPOST=0.9990;RSQ=0.9220;ERATE=0.0003;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62391046 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.889;LDAF=0.0082;AVGPOST=0.9978;RSQ=0.8898;ERATE=0.0003;THETA=0.0010;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62391060 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1458;AVGPOST=0.9976;RSQ=0.9926;ERATE=0.0005;THETA=0.0004;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 62391226 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8144;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62391234 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1148;AVGPOST=0.9987;RSQ=0.9948;ERATE=0.0004;THETA=0.0005;AC=248;AN=2184 GT:DS:GL:BD 0.11355311 0 1 62391335 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0087;AVGPOST=0.9997;RSQ=0.9828;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62391385 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.7600;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62391395 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.8974;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62391420 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.809;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8810;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62391446 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9098;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62391583 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0363;AVGPOST=0.9991;RSQ=0.9922;ERATE=0.0003;THETA=0.0003;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 62391729 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62391746 . G GT 11 PASS INDEL;BAVGPOST=0.999;BRSQ=0.567;LDAF=0.0020;AVGPOST=0.9982;RSQ=0.6292;ERATE=0.0006;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62391797 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1144;AVGPOST=0.9987;RSQ=0.9948;ERATE=0.0004;THETA=0.0005;AC=248;AN=2184 GT:DS:GL:BD 0.11355311 0 1 62391981 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8885;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62392067 . T TA 44 PASS INDEL;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62392216 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.5971;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62392227 . G GT 57 PASS INDEL;BAVGPOST=0.990;BRSQ=0.552;LDAF=0.0245;AVGPOST=0.9706;RSQ=0.5125;ERATE=0.0061;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62392239 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0231;AVGPOST=0.9983;RSQ=0.9719;ERATE=0.0003;THETA=0.0003;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 62392287 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5330;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62392329 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8685;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62392494 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.983;LDAF=0.1152;AVGPOST=0.9978;RSQ=0.9919;ERATE=0.0003;THETA=0.0009;AC=252;AN=2184 GT:DS:GL:BD 0.11538462 0 1 62392509 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62392610 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8538;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62392706 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62392897 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5195;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62392912 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0414;AVGPOST=0.9992;RSQ=0.9922;ERATE=0.0003;THETA=0.0003;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 62392933 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.670;LDAF=0.0040;AVGPOST=0.9986;RSQ=0.8743;ERATE=0.0004;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62393203 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8913;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62393209 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8497;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62393212 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7102;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62393277 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0013;AVGPOST=0.9999;RSQ=0.9499;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62393367 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62393386 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62393394 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8684;AVGPOST=0.9999;RSQ=0.9996;ERATE=0.0003;THETA=0.0004;AC=1896;AN=2184 GT:DS:GL:BD 0.86813188 1 1 62393420 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0394;AVGPOST=0.9999;RSQ=0.9990;ERATE=0.0003;THETA=0.0014;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 62393426 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62393542 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62393566 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62393575 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0041;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62393621 . T TA 27 PASS INDEL;BAVGPOST=0.999;BRSQ=0.668;LDAF=0.0039;AVGPOST=0.9972;RSQ=0.6938;ERATE=0.0014;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62393638 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0158;AVGPOST=0.9995;RSQ=0.9868;ERATE=0.0003;THETA=0.0024;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62393713 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8130;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62393725 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62393734 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62393748 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8540;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62393752 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7109;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62393775 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9865;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62393964 . C CA 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5241;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62394023 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6937;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62394036 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6947;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62394037 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0257;AVGPOST=0.9997;RSQ=0.9955;ERATE=0.0003;THETA=0.0002;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 62394053 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6575;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62394096 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0259;AVGPOST=0.9992;RSQ=0.9872;ERATE=0.0003;THETA=0.0023;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 62394142 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7655;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62394249 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0430;AVGPOST=0.9990;RSQ=0.9903;ERATE=0.0003;THETA=0.0006;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 62394262 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0039;AVGPOST=0.9986;RSQ=0.8641;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62394424 rs72290428 TATA T 311 PASS INDEL;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0033;AVGPOST=0.9994;RSQ=0.9124;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62394462 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.857;LDAF=0.0299;AVGPOST=0.9946;RSQ=0.9347;ERATE=0.0006;THETA=0.0003;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 62394483 . AAT A 426 PASS INDEL;BAVGPOST=0.965;BRSQ=0.819;LDAF=0.1105;AVGPOST=0.9835;RSQ=0.9398;ERATE=0.0005;THETA=0.0028;AC=242;AN=2184 GT:DS:GL:BD 0.11080586 0 1 62394485 rs72463708 TATAAA T 18922 PASS INDEL;BAVGPOST=0.986;BRSQ=0.944;LDAF=0.1189;AVGPOST=0.9926;RSQ=0.9742;ERATE=0.0004;THETA=0.0003;AC=258;AN=2184 GT:DS:GL:BD 0.11813187 0 1 62394734 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.1014;AVGPOST=0.9985;RSQ=0.9946;ERATE=0.0003;THETA=0.0008;AC=221;AN=2184 GT:DS:GL:BD 0.10119048 0 1 62394777 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8366;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62394785 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0237;AVGPOST=0.9982;RSQ=0.9754;ERATE=0.0003;THETA=0.0005;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 62394822 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0426;AVGPOST=0.9997;RSQ=0.9971;ERATE=0.0003;THETA=0.0003;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 62394882 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0013;AVGPOST=0.9999;RSQ=0.9551;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62395002 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0050;AVGPOST=0.9989;RSQ=0.9004;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62395073 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62395084 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7283;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62395089 rs113132620 ATTG A 17744 PASS INDEL;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1012;AVGPOST=0.9977;RSQ=0.9907;ERATE=0.0004;THETA=0.0004;AC=220;AN=2184 GT:DS:GL:BD 0.10073260 0 1 62395164 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0428;AVGPOST=0.9987;RSQ=0.9886;ERATE=0.0003;THETA=0.0002;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 62395212 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62395254 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62395256 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7445;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62395320 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0424;AVGPOST=0.9996;RSQ=0.9964;ERATE=0.0003;THETA=0.0002;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 62395326 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6591;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62395359 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6966;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62395402 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0068;AVGPOST=0.9994;RSQ=0.9619;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62395521 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0426;AVGPOST=0.9997;RSQ=0.9967;ERATE=0.0003;THETA=0.0005;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 62395614 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0367;AVGPOST=0.9984;RSQ=0.9855;ERATE=0.0003;THETA=0.0004;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 62395660 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.955;BRSQ=0.938;LDAF=0.5273;AVGPOST=0.9611;RSQ=0.9546;ERATE=0.0015;THETA=0.0009;AC=1152;AN=2184 GT:DS:GL:BD 0.52747256 1 1 62395678 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62395706 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7891;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62395894 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5189;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62395978 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5467;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62396054 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5614;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62396149 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0636;AVGPOST=0.9930;RSQ=0.9662;ERATE=0.0006;THETA=0.0007;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 62396208 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.817;LDAF=0.0096;AVGPOST=0.9974;RSQ=0.8867;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62396306 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0376;AVGPOST=0.9997;RSQ=0.9964;ERATE=0.0003;THETA=0.0005;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 62396358 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5149;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62396416 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.5931;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62396483 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.488;LDAF=0.0029;AVGPOST=0.9980;RSQ=0.6959;ERATE=0.0006;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62396602 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.942;LDAF=0.5548;AVGPOST=0.9308;RSQ=0.9055;ERATE=0.0147;THETA=0.0014;AC=1223;AN=2184 GT:DS:GL:BD 0.55998170 1 1 62396741 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0035;AVGPOST=0.9978;RSQ=0.7528;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62396780 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9225;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62396823 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0138;AVGPOST=0.9997;RSQ=0.9894;ERATE=0.0003;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62396904 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0383;AVGPOST=0.9995;RSQ=0.9944;ERATE=0.0003;THETA=0.0004;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 62397011 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7085;ERATE=0.0003;THETA=0.0022;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62397013 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.940;LDAF=0.0138;AVGPOST=0.9984;RSQ=0.9488;ERATE=0.0005;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 62397023 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0284;AVGPOST=0.9982;RSQ=0.9740;ERATE=0.0004;THETA=0.0002;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 62397169 . C CGA 41 PASS INDEL;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0028;AVGPOST=0.9977;RSQ=0.6764;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62397366 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6582;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62397382 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0142;AVGPOST=0.9991;RSQ=0.9746;ERATE=0.0003;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62397621 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=0.9993;RSQ=0.9525;ERATE=0.0003;THETA=0.0012;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62397651 rs68006449 TTTTTA T 20970 PASS INDEL;BAVGPOST=0.996;BRSQ=0.984;LDAF=0.1147;AVGPOST=0.9982;RSQ=0.9934;ERATE=0.0004;THETA=0.0003;AC=249;AN=2184 GT:DS:GL:BD 0.11401099 0 1 62397655 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5650;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62397822 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0259;AVGPOST=0.9985;RSQ=0.9797;ERATE=0.0003;THETA=0.0003;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 62397827 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.8055;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62397850 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0646;AVGPOST=0.9969;RSQ=0.9817;ERATE=0.0008;THETA=0.0003;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 62397917 . TTA T 18672 PASS INDEL;BAVGPOST=0.994;BRSQ=0.977;LDAF=0.1032;AVGPOST=0.9990;RSQ=0.9956;ERATE=0.0003;THETA=0.0006;AC=226;AN=2184 GT:DS:GL:BD 0.10347985 0 1 62398048 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62398246 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1186;AVGPOST=0.9990;RSQ=0.9963;ERATE=0.0003;THETA=0.0007;AC=258;AN=2184 GT:DS:GL:BD 0.11813187 0 1 62398269 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62398307 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0006;AVGPOST=0.9989;RSQ=0.2291;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62398528 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0026;AVGPOST=0.9981;RSQ=0.7451;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62398569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5364;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62398808 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6710;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62398988 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.4994;AVGPOST=0.9939;RSQ=0.9915;ERATE=0.0007;THETA=0.0003;AC=1090;AN=2184 GT:DS:GL:BD 0.49908423 0 1 62399084 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0024;AVGPOST=0.9958;RSQ=0.3306;ERATE=0.0008;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62399127 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0029;AVGPOST=0.9976;RSQ=0.6647;ERATE=0.0006;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62399191 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.922;LDAF=0.0348;AVGPOST=0.9964;RSQ=0.9629;ERATE=0.0004;THETA=0.0003;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 62399306 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0464;AVGPOST=0.9990;RSQ=0.9909;ERATE=0.0004;THETA=0.0004;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 62399372 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0469;AVGPOST=0.9994;RSQ=0.9949;ERATE=0.0003;THETA=0.0006;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 62399424 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.4928;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62399595 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0463;AVGPOST=0.9997;RSQ=0.9974;ERATE=0.0003;THETA=0.0005;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 62399631 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.736;LDAF=0.0058;AVGPOST=0.9973;RSQ=0.8083;ERATE=0.0006;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62399646 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.738;LDAF=0.0030;AVGPOST=0.9971;RSQ=0.6348;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62399796 . GTTA G 5984 PASS INDEL;BAVGPOST=0.995;BRSQ=0.958;LDAF=0.0466;AVGPOST=0.9991;RSQ=0.9914;ERATE=0.0004;THETA=0.0002;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 62399799 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.865;LDAF=0.0458;AVGPOST=0.9987;RSQ=0.9883;ERATE=0.0003;THETA=0.0008;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 62399854 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.818;LDAF=0.0596;AVGPOST=0.9605;RSQ=0.7427;ERATE=0.0075;THETA=0.0002;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 62399883 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.909;LDAF=0.0728;AVGPOST=0.9920;RSQ=0.9566;ERATE=0.0008;THETA=0.0004;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 62400087 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0043;AVGPOST=0.9987;RSQ=0.8864;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62400144 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0281;AVGPOST=0.9996;RSQ=0.9939;ERATE=0.0003;THETA=0.0005;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 62400369 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62400394 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8756;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62400396 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0100;AVGPOST=1.0000;RSQ=0.9978;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62400487 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.4854;AVGPOST=0.9963;RSQ=0.9956;ERATE=0.0003;THETA=0.0003;AC=1060;AN=2184 GT:DS:GL:BD 0.48534799 0 1 62400512 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0466;AVGPOST=0.9992;RSQ=0.9934;ERATE=0.0003;THETA=0.0004;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 62400531 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7301;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62400540 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8037;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62400541 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0022;AVGPOST=0.9978;RSQ=0.6208;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62400554 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.702;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6374;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62400730 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62400758 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9998;RSQ=0.9819;ERATE=0.0003;THETA=0.0018;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62400775 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0031;AVGPOST=0.9971;RSQ=0.6388;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62400803 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0101;AVGPOST=0.9997;RSQ=0.9870;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62400967 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5918;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62401051 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8786;ERATE=0.0004;THETA=0.0026;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62401084 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62401087 . TCCCAGAAAAG T 231 PASS INDEL;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62401148 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5931;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62401223 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5266;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62401291 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0385;AVGPOST=0.9973;RSQ=0.9792;ERATE=0.0004;THETA=0.0004;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 62401340 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.980;LDAF=0.0476;AVGPOST=0.9977;RSQ=0.9823;ERATE=0.0006;THETA=0.0005;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 62401493 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5118;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62401674 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0062;AVGPOST=0.9987;RSQ=0.9237;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62401784 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4486;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62401820 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.658;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5492;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62401888 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.728;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4413;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62401903 rs72231614 TATAC T 2736 PASS INDEL;BAVGPOST=0.988;BRSQ=0.873;LDAF=0.0473;AVGPOST=0.9889;RSQ=0.9168;ERATE=0.0007;THETA=0.0010;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 62401904 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.861;LDAF=0.0083;AVGPOST=0.9942;RSQ=0.7220;ERATE=0.0008;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62402127 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.600;LDAF=0.0052;AVGPOST=0.9971;RSQ=0.7707;ERATE=0.0005;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62402230 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0064;AVGPOST=0.9983;RSQ=0.9116;ERATE=0.0004;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62402456 . C CTGG 63 PASS INDEL;BAVGPOST=0.999;BRSQ=0.637;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5142;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62402549 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5923;AVGPOST=0.9963;RSQ=0.9949;ERATE=0.0005;THETA=0.0007;AC=1294;AN=2184 GT:DS:GL:BD 0.59249085 1 1 62402631 . T TA 71 PASS INDEL;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7130;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62402648 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.660;LDAF=0.0033;AVGPOST=0.9971;RSQ=0.7071;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62402904 rs112608365 GTTTC G 12610 PASS INDEL;BAVGPOST=0.989;BRSQ=0.929;LDAF=0.0683;AVGPOST=0.9910;RSQ=0.9547;ERATE=0.0004;THETA=0.0004;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 62402911 . TC T 1166 PASS INDEL;BAVGPOST=0.988;BRSQ=0.917;LDAF=0.0618;AVGPOST=0.9903;RSQ=0.9434;ERATE=0.0004;THETA=0.0004;AC=135;AN=2184 GT:DS:GL:BD 0.06181319 0 1 62402956 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5424;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62403016 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5844;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62403173 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0471;AVGPOST=0.9989;RSQ=0.9908;ERATE=0.0004;THETA=0.0008;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 62403203 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62403206 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8750;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62403324 . T TC 1775 PASS INDEL;BAVGPOST=0.994;BRSQ=0.952;LDAF=0.0554;AVGPOST=0.9936;RSQ=0.9556;ERATE=0.0006;THETA=0.0004;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 62403376 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.691;LDAF=0.0019;AVGPOST=0.9983;RSQ=0.6317;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62403405 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.744;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.5520;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62403418 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.918;LDAF=0.8543;AVGPOST=0.9779;RSQ=0.9313;ERATE=0.0023;THETA=0.0005;AC=1875;AN=2184 GT:DS:GL:BD 0.85851645 1 1 62403443 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0068;AVGPOST=0.9977;RSQ=0.8453;ERATE=0.0007;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62403471 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0061;AVGPOST=0.9978;RSQ=0.8576;ERATE=0.0005;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62403507 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1162;AVGPOST=0.9981;RSQ=0.9929;ERATE=0.0003;THETA=0.0007;AC=252;AN=2184 GT:DS:GL:BD 0.11538462 0 1 62403564 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0014;AVGPOST=0.9978;RSQ=0.3195;ERATE=0.0006;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62403614 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.789;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.7523;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62403626 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62403746 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=0.9993;RSQ=0.9486;ERATE=0.0003;THETA=0.0010;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62403800 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5774;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62403851 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5854;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62403857 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0172;AVGPOST=0.9992;RSQ=0.9827;ERATE=0.0003;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 62403932 . G GAT 46 PASS INDEL;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0019;AVGPOST=0.9973;RSQ=0.3745;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62403948 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0071;AVGPOST=0.9992;RSQ=0.9499;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62403985 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.7215;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62403996 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0467;AVGPOST=0.9999;RSQ=0.9991;ERATE=0.0003;THETA=0.0003;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 62404017 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1067;AVGPOST=0.9976;RSQ=0.9917;ERATE=0.0003;THETA=0.0004;AC=232;AN=2184 GT:DS:GL:BD 0.10622711 0 1 62404041 . G GT 10649 PASS INDEL;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0529;AVGPOST=0.9994;RSQ=0.9952;ERATE=0.0003;THETA=0.0006;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 62404084 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0069;AVGPOST=0.9996;RSQ=0.9748;ERATE=0.0003;THETA=0.0033;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62404189 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.835;LDAF=0.0036;AVGPOST=0.9996;RSQ=0.9554;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62404215 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62404467 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0016;AVGPOST=0.9981;RSQ=0.5514;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62404468 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.642;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4119;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62404469 . T TA 1545 PASS INDEL;BAVGPOST=0.960;BRSQ=0.867;LDAF=0.1482;AVGPOST=0.9866;RSQ=0.9621;ERATE=0.0004;THETA=0.0003;AC=321;AN=2184 GT:DS:GL:BD 0.14697802 0 1 62404477 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.977;LDAF=0.1565;AVGPOST=0.9884;RSQ=0.9699;ERATE=0.0010;THETA=0.0006;AC=334;AN=2184 GT:DS:GL:BD 0.15293041 0 1 62404550 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.654;LDAF=0.0039;AVGPOST=0.9984;RSQ=0.8136;ERATE=0.0004;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62404620 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9766;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62404668 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.975;LDAF=0.0293;AVGPOST=0.9945;RSQ=0.9336;ERATE=0.0004;THETA=0.0003;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 62404669 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.929;LDAF=0.1059;AVGPOST=0.9973;RSQ=0.9885;ERATE=0.0006;THETA=0.0005;AC=231;AN=2184 GT:DS:GL:BD 0.10576923 0 1 62404689 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.927;LDAF=0.1034;AVGPOST=0.9934;RSQ=0.9731;ERATE=0.0008;THETA=0.0006;AC=229;AN=2184 GT:DS:GL:BD 0.10485348 0 1 62404858 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8778;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62404953 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0468;AVGPOST=0.9997;RSQ=0.9974;ERATE=0.0003;THETA=0.0005;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 62405225 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5019;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62405432 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.724;LDAF=0.0063;AVGPOST=0.9919;RSQ=0.5713;ERATE=0.0007;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62405592 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.767;LDAF=0.0067;AVGPOST=0.9970;RSQ=0.8255;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62405593 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.576;LDAF=0.0025;AVGPOST=0.9985;RSQ=0.7275;ERATE=0.0006;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62405672 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0039;AVGPOST=0.9963;RSQ=0.6707;ERATE=0.0006;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62405831 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.1185;AVGPOST=0.9983;RSQ=0.9938;ERATE=0.0003;THETA=0.0002;AC=257;AN=2184 GT:DS:GL:BD 0.11767399 0 1 62405873 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0473;AVGPOST=0.9989;RSQ=0.9918;ERATE=0.0003;THETA=0.0004;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 62405874 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0139;AVGPOST=0.9987;RSQ=0.9579;ERATE=0.0004;THETA=0.0006;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 62406053 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0473;AVGPOST=0.9985;RSQ=0.9882;ERATE=0.0004;THETA=0.0003;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 62406155 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4679;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62406159 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.932;LDAF=0.0455;AVGPOST=0.9988;RSQ=0.9871;ERATE=0.0004;THETA=0.0006;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 62406202 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0141;AVGPOST=0.9993;RSQ=0.9777;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62406203 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5776;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62406258 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.964;LDAF=0.0268;AVGPOST=0.9975;RSQ=0.9633;ERATE=0.0004;THETA=0.0004;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 62406259 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.967;LDAF=0.1093;AVGPOST=0.9929;RSQ=0.9754;ERATE=0.0013;THETA=0.0006;AC=237;AN=2184 GT:DS:GL:BD 0.10851648 0 1 62406270 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0032;AVGPOST=0.9969;RSQ=0.5989;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62406312 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.583;LDAF=0.0030;AVGPOST=0.9976;RSQ=0.6556;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62406313 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.557;LDAF=0.0080;AVGPOST=0.9891;RSQ=0.4616;ERATE=0.0025;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62406349 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.939;LDAF=0.0461;AVGPOST=0.9983;RSQ=0.9859;ERATE=0.0003;THETA=0.0003;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 62406650 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.4712;AVGPOST=0.9955;RSQ=0.9942;ERATE=0.0004;THETA=0.0004;AC=1030;AN=2184 GT:DS:GL:BD 0.47161171 0 1 62406655 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62406661 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6630;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62406676 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62406679 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0631;AVGPOST=0.9986;RSQ=0.9915;ERATE=0.0003;THETA=0.0024;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 62406809 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.813;LDAF=0.0027;AVGPOST=0.9987;RSQ=0.7785;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62406859 . T TG 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62406930 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.8022;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62407045 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5764;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62407107 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.571;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7197;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62407109 . GATC G 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7070;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62407246 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.894;LDAF=0.0188;AVGPOST=0.9948;RSQ=0.8914;ERATE=0.0004;THETA=0.0003;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 62407662 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.657;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7800;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62407795 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.761;LDAF=0.0024;AVGPOST=0.9985;RSQ=0.7685;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62407804 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0209;AVGPOST=0.9985;RSQ=0.9732;ERATE=0.0003;THETA=0.0005;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 62407853 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0369;AVGPOST=0.9982;RSQ=0.9830;ERATE=0.0004;THETA=0.0005;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 62407865 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0005;AVGPOST=0.9993;RSQ=0.3844;ERATE=0.0004;THETA=0.0018;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62407868 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62407884 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0140;AVGPOST=0.9994;RSQ=0.9802;ERATE=0.0003;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62407917 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.8679;AVGPOST=0.9973;RSQ=0.9912;ERATE=0.0003;THETA=0.0005;AC=1898;AN=2184 GT:DS:GL:BD 0.86904764 1 1 62408069 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5494;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62408155 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7257;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62408286 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62408382 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0467;AVGPOST=0.9996;RSQ=0.9962;ERATE=0.0003;THETA=0.0013;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 62408458 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.986;LDAF=0.8947;AVGPOST=0.9914;RSQ=0.9656;ERATE=0.0009;THETA=0.0003;AC=1958;AN=2184 GT:DS:GL:BD 0.89652014 1 1 62408464 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.526;LDAF=0.0059;AVGPOST=0.9952;RSQ=0.6563;ERATE=0.0010;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62408472 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.732;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5519;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62408501 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0464;AVGPOST=0.9989;RSQ=0.9916;ERATE=0.0003;THETA=0.0008;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 62408549 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4985;AVGPOST=0.9980;RSQ=0.9972;ERATE=0.0003;THETA=0.0004;AC=1089;AN=2184 GT:DS:GL:BD 0.49862638 0 1 62408590 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0467;AVGPOST=0.9999;RSQ=0.9991;ERATE=0.0003;THETA=0.0002;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 62408641 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5929;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62408738 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6872;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62408764 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1103;AVGPOST=0.9985;RSQ=0.9948;ERATE=0.0003;THETA=0.0008;AC=241;AN=2184 GT:DS:GL:BD 0.11034799 0 1 62408826 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6398;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62408867 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.685;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5545;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62408875 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.3202;AVGPOST=0.9948;RSQ=0.9917;ERATE=0.0006;THETA=0.0005;AC=699;AN=2184 GT:DS:GL:BD 0.32005495 0 1 62408970 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0641;AVGPOST=0.9987;RSQ=0.9917;ERATE=0.0003;THETA=0.0005;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 62408996 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6858;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62409032 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6492;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62409155 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0059;AVGPOST=0.9970;RSQ=0.8025;ERATE=0.0006;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62409252 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0466;AVGPOST=0.9994;RSQ=0.9941;ERATE=0.0003;THETA=0.0008;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 62409372 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0068;AVGPOST=0.9992;RSQ=0.9513;ERATE=0.0003;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62409532 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.629;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.5979;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62409634 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.661;LDAF=0.0036;AVGPOST=0.9986;RSQ=0.8317;ERATE=0.0004;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62409644 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7377;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62409756 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9936;ERATE=0.0003;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62409883 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8399;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62409928 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62410100 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0207;AVGPOST=0.9996;RSQ=0.9920;ERATE=0.0003;THETA=0.0006;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 62410141 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0466;AVGPOST=0.9998;RSQ=0.9979;ERATE=0.0003;THETA=0.0002;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 62410179 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8821;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62410382 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.776;LDAF=0.0062;AVGPOST=0.9974;RSQ=0.8260;ERATE=0.0005;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62410424 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9136;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62410541 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0266;AVGPOST=0.9976;RSQ=0.9641;ERATE=0.0003;THETA=0.0003;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 62410556 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.7003;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62410705 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0037;AVGPOST=0.9967;RSQ=0.6252;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62410772 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0098;AVGPOST=0.9994;RSQ=0.9725;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62410850 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0221;AVGPOST=0.9971;RSQ=0.9512;ERATE=0.0006;THETA=0.0006;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 62410951 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0020;AVGPOST=0.9977;RSQ=0.4782;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62410958 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.786;LDAF=0.0045;AVGPOST=0.9973;RSQ=0.7431;ERATE=0.0004;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62411155 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.972;LDAF=0.1158;AVGPOST=0.9947;RSQ=0.9792;ERATE=0.0006;THETA=0.0007;AC=251;AN=2184 GT:DS:GL:BD 0.11492674 0 1 62411188 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=0.9990;RSQ=0.9247;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62411215 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7578;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62411314 . AC A 565 PASS INDEL;BAVGPOST=0.997;BRSQ=0.793;LDAF=0.0083;AVGPOST=0.9956;RSQ=0.8056;ERATE=0.0007;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62411326 . AC A 554 PASS INDEL;BAVGPOST=0.997;BRSQ=0.778;LDAF=0.0067;AVGPOST=0.9972;RSQ=0.8237;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62411514 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.884;LDAF=0.0071;AVGPOST=0.9978;RSQ=0.8822;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62411596 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0022;AVGPOST=0.9989;RSQ=0.7737;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62411643 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.970;LDAF=0.0271;AVGPOST=0.9985;RSQ=0.9806;ERATE=0.0004;THETA=0.0003;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 62411892 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.660;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4823;ERATE=0.0006;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62411953 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.642;LDAF=0.0034;AVGPOST=0.9964;RSQ=0.5360;ERATE=0.0009;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62411955 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0042;AVGPOST=0.9951;RSQ=0.5352;ERATE=0.0006;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62412005 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0463;AVGPOST=0.9966;RSQ=0.9756;ERATE=0.0005;THETA=0.0005;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 62412200 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.903;LDAF=0.0357;AVGPOST=0.9908;RSQ=0.9105;ERATE=0.0003;THETA=0.0004;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 62412203 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.903;LDAF=0.0377;AVGPOST=0.9917;RSQ=0.9224;ERATE=0.0003;THETA=0.0003;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 62412210 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62412310 . AC A 128 PASS INDEL;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7233;ERATE=0.0005;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62412452 . AC A 441 PASS INDEL;BAVGPOST=0.997;BRSQ=0.709;LDAF=0.0052;AVGPOST=0.9962;RSQ=0.6835;ERATE=0.0006;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62412505 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0466;AVGPOST=0.9994;RSQ=0.9942;ERATE=0.0004;THETA=0.0006;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 62412542 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0044;AVGPOST=0.9993;RSQ=0.9296;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62412563 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62412677 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0506;AVGPOST=0.9957;RSQ=0.9689;ERATE=0.0006;THETA=0.0005;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 62412747 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0095;AVGPOST=0.9980;RSQ=0.9117;ERATE=0.0004;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62412892 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.772;LDAF=0.0053;AVGPOST=0.9982;RSQ=0.8700;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62412894 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.810;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6312;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62412930 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9700;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62412943 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9624;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62412952 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0274;AVGPOST=0.9992;RSQ=0.9903;ERATE=0.0003;THETA=0.0009;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 62413006 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.683;LDAF=0.0156;AVGPOST=0.9838;RSQ=0.5900;ERATE=0.0064;THETA=0.0011;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62413125 . TC T 1641 PASS INDEL;BAVGPOST=0.998;BRSQ=0.970;LDAF=0.0301;AVGPOST=0.9976;RSQ=0.9690;ERATE=0.0005;THETA=0.0004;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 62413151 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.697;LDAF=0.0027;AVGPOST=0.9964;RSQ=0.4956;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62413312 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5699;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62413364 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.720;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62413416 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.976;LDAF=0.4885;AVGPOST=0.9707;RSQ=0.9628;ERATE=0.0046;THETA=0.0006;AC=1077;AN=2184 GT:DS:GL:BD 0.49313188 0 1 62413516 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6333;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62413579 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.703;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6105;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62413630 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.506;LDAF=0.0022;AVGPOST=0.9973;RSQ=0.4592;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62413757 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.608;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7374;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62413859 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.535;LDAF=0.0067;AVGPOST=0.9931;RSQ=0.6094;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62413860 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.621;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.4562;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62413864 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.775;LDAF=0.0093;AVGPOST=0.9960;RSQ=0.8402;ERATE=0.0005;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62413873 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0471;AVGPOST=0.9974;RSQ=0.9797;ERATE=0.0005;THETA=0.0005;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 62413925 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0282;AVGPOST=0.9976;RSQ=0.9673;ERATE=0.0005;THETA=0.0003;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 62413979 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.847;LDAF=0.0091;AVGPOST=0.9976;RSQ=0.9048;ERATE=0.0004;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62414086 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.963;LDAF=0.0473;AVGPOST=0.9955;RSQ=0.9673;ERATE=0.0006;THETA=0.0005;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 62414112 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0485;AVGPOST=0.9946;RSQ=0.9604;ERATE=0.0006;THETA=0.0004;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 62414214 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.930;BRSQ=0.746;LDAF=0.1289;AVGPOST=0.9548;RSQ=0.8515;ERATE=0.0018;THETA=0.0004;AC=269;AN=2184 GT:DS:GL:BD 0.12316850 0 1 62414333 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0460;AVGPOST=0.9981;RSQ=0.9849;ERATE=0.0004;THETA=0.0011;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 62414336 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7921;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62414366 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.980;LDAF=0.0451;AVGPOST=0.9979;RSQ=0.9824;ERATE=0.0003;THETA=0.0003;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 62414388 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0342;AVGPOST=0.9969;RSQ=0.9661;ERATE=0.0006;THETA=0.0006;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 62414390 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0032;AVGPOST=0.9978;RSQ=0.7096;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62414404 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5882;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62414424 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6349;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62414436 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1093;AVGPOST=0.9981;RSQ=0.9926;ERATE=0.0003;THETA=0.0004;AC=238;AN=2184 GT:DS:GL:BD 0.10897436 0 1 62414437 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4916;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62414507 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.744;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8613;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62414743 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9983;RSQ=0.8836;ERATE=0.0003;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62414751 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9197;ERATE=0.0004;THETA=0.0014;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62414752 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.8667;AVGPOST=0.9948;RSQ=0.9809;ERATE=0.0006;THETA=0.0006;AC=1895;AN=2184 GT:DS:GL:BD 0.86767399 1 1 62414785 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.5471;ERATE=0.0003;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62414824 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.4045;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62414834 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.784;LDAF=0.0084;AVGPOST=0.9945;RSQ=0.7413;ERATE=0.0024;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62414859 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0139;AVGPOST=0.9976;RSQ=0.9285;ERATE=0.0004;THETA=0.0006;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62414893 . AAAAG A 216 PASS INDEL;BAVGPOST=0.998;BRSQ=0.880;LDAF=0.0062;AVGPOST=0.9987;RSQ=0.9149;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62414904 . AAAGG A 41 PASS INDEL;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5013;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62414958 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.647;LDAF=0.0028;AVGPOST=0.9970;RSQ=0.6192;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62414980 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0024;AVGPOST=0.9978;RSQ=0.6100;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62414982 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.6997;ERATE=0.0007;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62415077 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.973;LDAF=0.0456;AVGPOST=0.9992;RSQ=0.9931;ERATE=0.0003;THETA=0.0006;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 62415078 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0029;AVGPOST=0.9988;RSQ=0.8210;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62415086 rs34849424 C CCAT 9354 PASS INDEL;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0442;AVGPOST=0.9974;RSQ=0.9795;ERATE=0.0003;THETA=0.0005;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 62415176 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7142;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62415207 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.753;LDAF=0.0020;AVGPOST=0.9981;RSQ=0.6166;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62415283 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0466;AVGPOST=0.9997;RSQ=0.9974;ERATE=0.0003;THETA=0.0003;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 62415381 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0018;AVGPOST=0.9997;RSQ=0.9297;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62415430 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8421;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62415502 rs67569656 TG T 36395 PASS INDEL;BAVGPOST=0.994;BRSQ=0.991;LDAF=0.4924;AVGPOST=0.9916;RSQ=0.9888;ERATE=0.0009;THETA=0.0009;AC=1081;AN=2184 GT:DS:GL:BD 0.49496338 0 1 62415525 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4978;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62415534 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.701;LDAF=0.0003;AVGPOST=0.9994;RSQ=0.3673;ERATE=0.0003;THETA=0.0008;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62415552 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.977;LDAF=0.0468;AVGPOST=0.9989;RSQ=0.9895;ERATE=0.0004;THETA=0.0014;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 62415629 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6159;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62415645 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.971;LDAF=0.0279;AVGPOST=0.9979;RSQ=0.9707;ERATE=0.0004;THETA=0.0007;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 62415789 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1202;AVGPOST=0.9963;RSQ=0.9854;ERATE=0.0004;THETA=0.0008;AC=260;AN=2184 GT:DS:GL:BD 0.11904762 0 1 62415817 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.528;LDAF=0.0085;AVGPOST=0.9914;RSQ=0.6174;ERATE=0.0008;THETA=0.0010;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62415825 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.0485;AVGPOST=0.9969;RSQ=0.9783;ERATE=0.0004;THETA=0.0005;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 62415982 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0138;AVGPOST=0.9998;RSQ=0.9936;ERATE=0.0003;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62416020 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.637;LDAF=0.0008;AVGPOST=0.9998;RSQ=0.8876;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62416082 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0053;AVGPOST=0.9977;RSQ=0.8115;ERATE=0.0005;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62416159 . TAAAG T 621 PASS INDEL;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0040;AVGPOST=0.9988;RSQ=0.8795;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62416243 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0044;AVGPOST=0.9994;RSQ=0.9319;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62416279 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6188;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62416290 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.643;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6406;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62416292 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0032;AVGPOST=0.9991;RSQ=0.8898;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62416318 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5967;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62416321 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9265;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62416324 . CTG C 2017 PASS INDEL;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0232;AVGPOST=0.9973;RSQ=0.9514;ERATE=0.0005;THETA=0.0006;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 62416342 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8369;ERATE=0.0003;THETA=0.0027;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62416389 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.6066;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62416478 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5897;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62416637 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0027;AVGPOST=0.9963;RSQ=0.5425;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62416864 . GA G 123 PASS INDEL;BAVGPOST=0.990;BRSQ=0.480;LDAF=0.0147;AVGPOST=0.9838;RSQ=0.5538;ERATE=0.0032;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62416878 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0418;AVGPOST=0.9979;RSQ=0.9809;ERATE=0.0005;THETA=0.0005;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 62416970 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0049;AVGPOST=0.9961;RSQ=0.7040;ERATE=0.0005;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62416971 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.666;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6670;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62416999 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.5760;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62417290 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0468;AVGPOST=0.9996;RSQ=0.9961;ERATE=0.0003;THETA=0.0004;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 62417305 . A AT 990 PASS INDEL;BAVGPOST=0.986;BRSQ=0.793;LDAF=0.0456;AVGPOST=0.9670;RSQ=0.7097;ERATE=0.0082;THETA=0.0006;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 62417321 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6731;ERATE=0.0005;THETA=0.0024;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62417343 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4396;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62417378 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8864;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62417664 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1135;AVGPOST=0.9975;RSQ=0.9914;ERATE=0.0003;THETA=0.0007;AC=246;AN=2184 GT:DS:GL:BD 0.11263736 0 1 62417707 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.6000;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62417745 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0332;AVGPOST=0.9992;RSQ=0.9910;ERATE=0.0004;THETA=0.0012;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 62417890 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6550;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62417952 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.897;BRSQ=0.727;LDAF=0.6652;AVGPOST=0.8642;RSQ=0.7030;ERATE=0.0925;THETA=0.0003;AC=1500;AN=2184 GT:DS:GL:BD 0.68681318 1 1 62418218 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8282;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62418248 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8719;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62418453 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=0.9992;RSQ=0.9416;ERATE=0.0003;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62418487 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1071;AVGPOST=0.9990;RSQ=0.9957;ERATE=0.0003;THETA=0.0008;AC=234;AN=2184 GT:DS:GL:BD 0.10714286 0 1 62418511 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5181;ERATE=0.0004;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62418607 . AG A 481 PASS INDEL;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0045;AVGPOST=0.9981;RSQ=0.8238;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62418641 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6553;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62418727 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9854;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62418759 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.9100;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62418920 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0025;AVGPOST=0.9994;RSQ=0.8909;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62418930 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6201;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62418951 . TAACTC T 422 PASS INDEL;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0038;AVGPOST=0.9986;RSQ=0.8266;ERATE=0.0005;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62419205 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.8237;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62419470 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62419516 . GC G 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.735;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6412;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62419654 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0212;AVGPOST=0.9997;RSQ=0.9935;ERATE=0.0003;THETA=0.0004;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 62419727 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.994;LDAF=0.5677;AVGPOST=0.9957;RSQ=0.9940;ERATE=0.0006;THETA=0.0019;AC=1241;AN=2184 GT:DS:GL:BD 0.56822342 1 1 62419881 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.708;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6133;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62419888 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0222;AVGPOST=0.9955;RSQ=0.9270;ERATE=0.0003;THETA=0.0005;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 62419906 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.622;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.9064;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62419917 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0067;AVGPOST=0.9997;RSQ=0.9823;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62419998 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6843;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62420289 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0075;AVGPOST=0.9982;RSQ=0.9025;ERATE=0.0004;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62420303 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.8704;AVGPOST=0.9982;RSQ=0.9932;ERATE=0.0005;THETA=0.0006;AC=1901;AN=2184 GT:DS:GL:BD 0.87042123 1 1 62420341 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4987;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62420425 . TTG T 24061 PASS INDEL;BAVGPOST=0.982;BRSQ=0.971;LDAF=0.4945;AVGPOST=0.9880;RSQ=0.9844;ERATE=0.0012;THETA=0.0002;AC=1082;AN=2184 GT:DS:GL:BD 0.49542123 0 1 62420426 . TG T 31076 PASS INDEL;BAVGPOST=0.979;BRSQ=0.965;LDAF=0.5059;AVGPOST=0.9806;RSQ=0.9745;ERATE=0.0026;THETA=0.0004;AC=1105;AN=2184 GT:DS:GL:BD 0.50595236 1 1 62420550 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.846;LDAF=0.9436;AVGPOST=0.9769;RSQ=0.8382;ERATE=0.0019;THETA=0.0003;AC=2071;AN=2184 GT:DS:GL:BD 0.94826007 1 1 62420586 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.922;LDAF=0.0299;AVGPOST=0.9941;RSQ=0.9244;ERATE=0.0009;THETA=0.0009;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 62420666 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9992;RSQ=0.9486;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62420671 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.577;LDAF=0.0127;AVGPOST=0.9824;RSQ=0.4668;ERATE=0.0044;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62420808 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0021;AVGPOST=0.9982;RSQ=0.6496;ERATE=0.0004;THETA=0.0001;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62421019 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0038;AVGPOST=0.9993;RSQ=0.9203;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62421024 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62421171 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0028;AVGPOST=0.9977;RSQ=0.6963;ERATE=0.0006;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62421229 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0072;AVGPOST=0.9990;RSQ=0.9464;ERATE=0.0003;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62421305 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62421489 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.9106;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62421498 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6628;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62421568 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7156;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62421613 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.4745;AVGPOST=0.9969;RSQ=0.9956;ERATE=0.0006;THETA=0.0005;AC=1036;AN=2184 GT:DS:GL:BD 0.47435898 0 1 62421790 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.898;LDAF=0.0366;AVGPOST=0.9937;RSQ=0.9322;ERATE=0.0005;THETA=0.0006;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 62422022 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0068;AVGPOST=0.9998;RSQ=0.9881;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62422267 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62422292 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.5706;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62422442 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2652;AVGPOST=0.9975;RSQ=0.9959;ERATE=0.0004;THETA=0.0005;AC=577;AN=2184 GT:DS:GL:BD 0.26419413 0 1 62422611 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62422842 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.707;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62422871 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6907;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62422954 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8007;ERATE=0.0007;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62423090 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0368;AVGPOST=0.9993;RSQ=0.9921;ERATE=0.0003;THETA=0.0004;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 62423098 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6129;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62423139 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62423212 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0042;AVGPOST=0.9980;RSQ=0.7964;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62423286 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0103;AVGPOST=0.9987;RSQ=0.9458;ERATE=0.0003;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62423303 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0367;AVGPOST=0.9994;RSQ=0.9929;ERATE=0.0003;THETA=0.0002;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 62423329 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1139;AVGPOST=0.9977;RSQ=0.9921;ERATE=0.0004;THETA=0.0003;AC=246;AN=2184 GT:DS:GL:BD 0.11263736 0 1 62423345 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8162;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62423441 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0097;AVGPOST=0.9997;RSQ=0.9863;ERATE=0.0003;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62423486 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.7609;AVGPOST=0.9976;RSQ=0.9947;ERATE=0.0007;THETA=0.0005;AC=1662;AN=2184 GT:DS:GL:BD 0.76098901 1 1 62423634 . CTACCTAAT C 352 PASS INDEL;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0035;AVGPOST=0.9973;RSQ=0.7056;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62423688 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7422;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62423790 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62424007 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.8702;AVGPOST=0.9987;RSQ=0.9953;ERATE=0.0004;THETA=0.0005;AC=1901;AN=2184 GT:DS:GL:BD 0.87042123 1 1 62424061 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.956;LDAF=0.0684;AVGPOST=0.9891;RSQ=0.9383;ERATE=0.0007;THETA=0.0005;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 62424102 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.880;LDAF=0.0032;AVGPOST=0.9982;RSQ=0.7620;ERATE=0.0005;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62424112 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0284;AVGPOST=0.9970;RSQ=0.9660;ERATE=0.0003;THETA=0.0004;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 62424123 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.987;LDAF=0.1176;AVGPOST=0.9991;RSQ=0.9967;ERATE=0.0004;THETA=0.0002;AC=256;AN=2184 GT:DS:GL:BD 0.11721612 0 1 62424165 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1176;AVGPOST=0.9987;RSQ=0.9952;ERATE=0.0003;THETA=0.0004;AC=256;AN=2184 GT:DS:GL:BD 0.11721612 0 1 62424207 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6194;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62424254 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.803;LDAF=0.0092;AVGPOST=0.9939;RSQ=0.7478;ERATE=0.0014;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62424392 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5229;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62424407 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0022;AVGPOST=0.9974;RSQ=0.5195;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62424542 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.724;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8538;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62424563 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.1128;ERATE=0.0004;THETA=0.0008;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62424574 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.793;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.7366;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62424597 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6061;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62424816 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.2598;AVGPOST=0.9942;RSQ=0.9898;ERATE=0.0008;THETA=0.0002;AC=565;AN=2184 GT:DS:GL:BD 0.25869963 0 1 62424824 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0276;AVGPOST=0.9984;RSQ=0.9763;ERATE=0.0004;THETA=0.0004;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 62424959 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0043;AVGPOST=0.9965;RSQ=0.6663;ERATE=0.0012;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62424973 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.762;LDAF=0.0049;AVGPOST=0.9935;RSQ=0.4754;ERATE=0.0015;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62425097 rs71762671 AT A 7725 PASS INDEL;BAVGPOST=0.751;BRSQ=0.521;LDAF=0.6430;AVGPOST=0.7709;RSQ=0.6296;ERATE=0.0113;THETA=0.0002;AC=1486;AN=2184 GT:DS:GL:BD 0.68040293 1 1 62425109 . TTC T 4008 PASS INDEL;BAVGPOST=0.857;BRSQ=0.612;LDAF=0.7931;AVGPOST=0.8775;RSQ=0.7236;ERATE=0.0032;THETA=0.0005;AC=1809;AN=2184 GT:DS:GL:BD 0.82829672 1 1 62425114 . T TTC 343 PASS INDEL;BAVGPOST=0.960;BRSQ=0.801;LDAF=0.1478;AVGPOST=0.8959;RSQ=0.6941;ERATE=0.0057;THETA=0.0032;AC=256;AN=2184 GT:DS:GL:BD 0.11721612 0 1 62425115 . T TC 1046 PASS INDEL;BAVGPOST=0.961;BRSQ=0.811;LDAF=0.1426;AVGPOST=0.9316;RSQ=0.8034;ERATE=0.0024;THETA=0.0005;AC=278;AN=2184 GT:DS:GL:BD 0.12728938 0 1 62425258 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0094;AVGPOST=0.9948;RSQ=0.7791;ERATE=0.0006;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62425362 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.725;LDAF=0.0112;AVGPOST=0.9954;RSQ=0.8279;ERATE=0.0004;THETA=0.0002;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62425447 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4897;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62425537 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62425599 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9449;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62425754 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6995;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62425794 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.5711;AVGPOST=0.9929;RSQ=0.9901;ERATE=0.0015;THETA=0.0004;AC=1247;AN=2184 GT:DS:GL:BD 0.57097071 1 1 62425830 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7969;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62425855 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62425883 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62425949 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7153;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62426101 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5517;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62426112 . TC T 746 PASS INDEL;BAVGPOST=0.996;BRSQ=0.691;LDAF=0.0078;AVGPOST=0.9952;RSQ=0.7706;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62426283 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.651;LDAF=0.0022;AVGPOST=0.9973;RSQ=0.6081;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62426405 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2587;AVGPOST=0.9982;RSQ=0.9962;ERATE=0.0004;THETA=0.0011;AC=564;AN=2184 GT:DS:GL:BD 0.25824177 0 1 62426414 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8328;ERATE=0.0008;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62426447 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.5867;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62426599 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62426771 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5409;AVGPOST=0.9979;RSQ=0.9970;ERATE=0.0008;THETA=0.0003;AC=1183;AN=2184 GT:DS:GL:BD 0.54166669 1 1 62426819 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0248;AVGPOST=0.9990;RSQ=0.9850;ERATE=0.0003;THETA=0.0007;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 62426926 . TA T 1396 PASS INDEL;BAVGPOST=0.992;BRSQ=0.808;LDAF=0.0210;AVGPOST=0.9937;RSQ=0.8856;ERATE=0.0004;THETA=0.0006;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 62426928 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9553;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62426952 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7425;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62427034 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5078;AVGPOST=0.9986;RSQ=0.9980;ERATE=0.0005;THETA=0.0003;AC=1110;AN=2184 GT:DS:GL:BD 0.50824177 1 1 62427103 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62427262 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62427366 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9973;RSQ=0.8532;ERATE=0.0004;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62427368 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.738;LDAF=0.0072;AVGPOST=0.9947;RSQ=0.7050;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62427369 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.4951;AVGPOST=0.9933;RSQ=0.9917;ERATE=0.0012;THETA=0.0006;AC=1082;AN=2184 GT:DS:GL:BD 0.49542123 0 1 62427462 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.736;LDAF=0.0037;AVGPOST=0.9973;RSQ=0.6568;ERATE=0.0007;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62427604 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0099;AVGPOST=0.9946;RSQ=0.7775;ERATE=0.0008;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62427658 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.941;BRSQ=0.741;LDAF=0.8704;AVGPOST=0.9215;RSQ=0.7361;ERATE=0.0157;THETA=0.0004;AC=1952;AN=2184 GT:DS:GL:BD 0.89377290 1 1 62427711 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.8692;AVGPOST=0.9980;RSQ=0.9922;ERATE=0.0007;THETA=0.0004;AC=1899;AN=2184 GT:DS:GL:BD 0.86950547 1 1 62427730 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0367;AVGPOST=0.9981;RSQ=0.9816;ERATE=0.0004;THETA=0.0004;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 62427827 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.562;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5301;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62427888 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.4833;AVGPOST=0.9965;RSQ=0.9957;ERATE=0.0005;THETA=0.0002;AC=1055;AN=2184 GT:DS:GL:BD 0.48305860 0 1 62428036 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62428148 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62428203 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6243;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62428228 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6850;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62428329 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62428416 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7667;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62428443 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.599;LDAF=0.0026;AVGPOST=0.9975;RSQ=0.6106;ERATE=0.0008;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62428444 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=0.9983;RSQ=0.9205;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62428687 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62428728 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0276;AVGPOST=0.9987;RSQ=0.9839;ERATE=0.0003;THETA=0.0005;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 62428732 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1146;AVGPOST=0.9992;RSQ=0.9972;ERATE=0.0004;THETA=0.0004;AC=249;AN=2184 GT:DS:GL:BD 0.11401099 0 1 62428803 . AGGATTTCCACTG A 28701 PASS INDEL;BAVGPOST=0.985;BRSQ=0.931;LDAF=0.1082;AVGPOST=0.9968;RSQ=0.9892;ERATE=0.0004;THETA=0.0005;AC=237;AN=2184 GT:DS:GL:BD 0.10851648 0 1 62428832 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0040;AVGPOST=0.9987;RSQ=0.8695;ERATE=0.0004;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62428846 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=0.9979;RSQ=0.9080;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62428912 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9999;AVGPOST=0.9998;RSQ=0.0498;ERATE=0.0003;THETA=0.0008;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 62428921 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4730;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62428978 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0089;AVGPOST=0.9992;RSQ=0.9596;ERATE=0.0004;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62429033 . AAGGCAGGT A 2510 PASS INDEL;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0152;AVGPOST=0.9976;RSQ=0.9378;ERATE=0.0003;THETA=0.0005;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62429086 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0101;AVGPOST=0.9973;RSQ=0.8942;ERATE=0.0006;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62429165 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.829;LDAF=0.0082;AVGPOST=0.9982;RSQ=0.9032;ERATE=0.0003;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62429178 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0042;AVGPOST=0.9969;RSQ=0.7082;ERATE=0.0009;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62429216 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.883;LDAF=0.8452;AVGPOST=0.9540;RSQ=0.8635;ERATE=0.0080;THETA=0.0004;AC=1874;AN=2184 GT:DS:GL:BD 0.85805863 1 1 62429248 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0027;AVGPOST=0.9969;RSQ=0.5643;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62429546 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5938;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62429621 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8940;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62429665 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1309;AVGPOST=0.9967;RSQ=0.9899;ERATE=0.0005;THETA=0.0043;AC=286;AN=2184 GT:DS:GL:BD 0.13095239 0 1 62429701 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8757;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62429765 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0274;AVGPOST=0.9984;RSQ=0.9792;ERATE=0.0003;THETA=0.0003;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 62429767 . T TCCC 157 PASS INDEL;BAVGPOST=0.999;BRSQ=0.728;LDAF=0.0067;AVGPOST=0.9958;RSQ=0.7438;ERATE=0.0006;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62429768 . T TC 7 PASS INDEL;BAVGPOST=0.997;BRSQ=0.575;LDAF=0.0091;AVGPOST=0.9899;RSQ=0.6082;ERATE=0.0006;THETA=0.0045;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62429863 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0020;AVGPOST=0.9975;RSQ=0.5121;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62429989 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.986;LDAF=0.1368;AVGPOST=0.9941;RSQ=0.9824;ERATE=0.0006;THETA=0.0004;AC=297;AN=2184 GT:DS:GL:BD 0.13598901 0 1 62430033 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.929;BRSQ=0.900;LDAF=0.5690;AVGPOST=0.9529;RSQ=0.9415;ERATE=0.0034;THETA=0.0003;AC=1246;AN=2184 GT:DS:GL:BD 0.57051283 1 1 62430060 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0026;AVGPOST=0.9982;RSQ=0.7137;ERATE=0.0009;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62430199 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0045;AVGPOST=0.9971;RSQ=0.7207;ERATE=0.0007;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62430345 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8670;AVGPOST=0.9966;RSQ=0.9880;ERATE=0.0006;THETA=0.0004;AC=1893;AN=2184 GT:DS:GL:BD 0.86675823 1 1 62430400 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.5756;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62430401 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1101;AVGPOST=0.9975;RSQ=0.9909;ERATE=0.0004;THETA=0.0004;AC=238;AN=2184 GT:DS:GL:BD 0.10897436 0 1 62430440 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0021;AVGPOST=0.9979;RSQ=0.6385;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62430505 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.816;LDAF=0.0061;AVGPOST=0.9942;RSQ=0.6472;ERATE=0.0017;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62430506 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6150;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62430509 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0019;AVGPOST=0.9975;RSQ=0.5375;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62430523 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4926;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62430641 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.731;LDAF=0.0107;AVGPOST=0.9979;RSQ=0.9132;ERATE=0.0006;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 62430708 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.771;LDAF=0.0188;AVGPOST=0.9937;RSQ=0.8687;ERATE=0.0004;THETA=0.0002;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 62430951 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0025;AVGPOST=0.9993;RSQ=0.8739;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62431022 . A ACT 1868 PASS INDEL;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0147;AVGPOST=0.9994;RSQ=0.9805;ERATE=0.0003;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 62431211 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0578;AVGPOST=0.9989;RSQ=0.9926;ERATE=0.0003;THETA=0.0006;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 62431249 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6799;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62431430 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.7163;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62431637 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.994;LDAF=0.4750;AVGPOST=0.9961;RSQ=0.9944;ERATE=0.0008;THETA=0.0003;AC=1037;AN=2184 GT:DS:GL:BD 0.47481686 0 1 62431666 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.713;LDAF=0.0019;AVGPOST=0.9985;RSQ=0.6903;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62431672 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.563;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6592;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62431683 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5678;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62431774 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0360;AVGPOST=0.9993;RSQ=0.9929;ERATE=0.0003;THETA=0.0003;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 62431850 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0035;AVGPOST=0.9961;RSQ=0.5488;ERATE=0.0009;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62431873 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0308;AVGPOST=0.9976;RSQ=0.9715;ERATE=0.0004;THETA=0.0008;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 62432016 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0057;AVGPOST=0.9983;RSQ=0.8685;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62432046 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1102;AVGPOST=0.9966;RSQ=0.9890;ERATE=0.0005;THETA=0.0003;AC=238;AN=2184 GT:DS:GL:BD 0.10897436 0 1 62432085 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62432087 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0127;AVGPOST=0.9986;RSQ=0.9544;ERATE=0.0003;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 62432152 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0497;AVGPOST=0.9985;RSQ=0.9901;ERATE=0.0004;THETA=0.0004;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 62432298 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.975;LDAF=0.5016;AVGPOST=0.9911;RSQ=0.9878;ERATE=0.0012;THETA=0.0003;AC=1102;AN=2184 GT:DS:GL:BD 0.50457877 1 1 62432336 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.851;LDAF=0.0376;AVGPOST=0.9910;RSQ=0.9032;ERATE=0.0005;THETA=0.0009;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 62432354 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0355;AVGPOST=0.9994;RSQ=0.9927;ERATE=0.0003;THETA=0.0004;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 62432439 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.806;LDAF=0.0052;AVGPOST=0.9972;RSQ=0.7820;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62432474 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0074;AVGPOST=0.9985;RSQ=0.9284;ERATE=0.0003;THETA=0.0029;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62432495 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7494;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62432585 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8839;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62432641 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1871;AVGPOST=0.9984;RSQ=0.9961;ERATE=0.0004;THETA=0.0003;AC=406;AN=2184 GT:DS:GL:BD 0.18589744 0 1 62432647 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4832;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62432708 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.786;LDAF=0.0034;AVGPOST=0.9983;RSQ=0.7973;ERATE=0.0008;THETA=0.0017;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62432730 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8879;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62432789 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1524;AVGPOST=0.9970;RSQ=0.9915;ERATE=0.0005;THETA=0.0004;AC=332;AN=2184 GT:DS:GL:BD 0.15201466 0 1 62432861 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7111;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62432888 . C CA 96 PASS INDEL;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6491;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62432917 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4969;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62433098 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6440;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62433100 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2894;AVGPOST=0.9979;RSQ=0.9968;ERATE=0.0004;THETA=0.0007;AC=630;AN=2184 GT:DS:GL:BD 0.28846154 0 1 62433404 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7309;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62433545 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6777;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62433551 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62433731 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9985;RSQ=0.9239;ERATE=0.0004;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62433760 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62433807 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62433809 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7451;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62433821 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0210;AVGPOST=0.9990;RSQ=0.9826;ERATE=0.0003;THETA=0.0003;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 62433939 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6223;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62433958 . CT C 188 PASS INDEL;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0025;AVGPOST=0.9981;RSQ=0.6844;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62433999 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.747;LDAF=0.0030;AVGPOST=0.9975;RSQ=0.7139;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62434037 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1077;AVGPOST=0.9986;RSQ=0.9954;ERATE=0.0003;THETA=0.0004;AC=236;AN=2184 GT:DS:GL:BD 0.10805861 0 1 62434097 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0050;AVGPOST=0.9977;RSQ=0.8208;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62434137 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1390;AVGPOST=0.9989;RSQ=0.9958;ERATE=0.0004;THETA=0.0005;AC=301;AN=2184 GT:DS:GL:BD 0.13782051 0 1 62434149 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0173;AVGPOST=0.9990;RSQ=0.9776;ERATE=0.0003;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 62434237 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0059;AVGPOST=0.9976;RSQ=0.8295;ERATE=0.0005;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62434330 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1081;AVGPOST=0.9976;RSQ=0.9918;ERATE=0.0005;THETA=0.0004;AC=237;AN=2184 GT:DS:GL:BD 0.10851648 0 1 62434331 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6915;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62434379 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0145;AVGPOST=0.9984;RSQ=0.9485;ERATE=0.0004;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62434396 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0057;AVGPOST=0.9935;RSQ=0.5760;ERATE=0.0010;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62434534 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0035;AVGPOST=0.9992;RSQ=0.9233;ERATE=0.0006;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62434604 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1061;AVGPOST=0.9987;RSQ=0.9950;ERATE=0.0003;THETA=0.0004;AC=233;AN=2184 GT:DS:GL:BD 0.10668498 0 1 62434692 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9310;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62434733 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7691;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62434918 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7515;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62434952 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8551;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62434971 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1886;AVGPOST=0.9991;RSQ=0.9974;ERATE=0.0005;THETA=0.0002;AC=411;AN=2184 GT:DS:GL:BD 0.18818681 0 1 62435013 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1926;AVGPOST=0.9989;RSQ=0.9971;ERATE=0.0003;THETA=0.0003;AC=420;AN=2184 GT:DS:GL:BD 0.19230770 0 1 62435066 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7736;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62435114 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7891;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62435141 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.988;LDAF=0.8633;AVGPOST=0.9971;RSQ=0.9893;ERATE=0.0004;THETA=0.0006;AC=1886;AN=2184 GT:DS:GL:BD 0.86355311 1 1 62435181 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0499;AVGPOST=0.9999;RSQ=0.9992;ERATE=0.0003;THETA=0.0006;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 62435228 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6047;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62435295 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.5309;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62435397 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1891;AVGPOST=0.9979;RSQ=0.9949;ERATE=0.0006;THETA=0.0002;AC=411;AN=2184 GT:DS:GL:BD 0.18818681 0 1 62435717 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0500;AVGPOST=0.9997;RSQ=0.9972;ERATE=0.0003;THETA=0.0007;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 62435728 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1093;AVGPOST=0.9994;RSQ=0.9975;ERATE=0.0003;THETA=0.0005;AC=239;AN=2184 GT:DS:GL:BD 0.10943224 0 1 62435747 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.5636;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62435837 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6555;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62435838 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6237;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62435960 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1088;AVGPOST=0.9987;RSQ=0.9947;ERATE=0.0003;THETA=0.0003;AC=239;AN=2184 GT:DS:GL:BD 0.10943224 0 1 62435963 . T TC 882 PASS INDEL;BAVGPOST=0.988;BRSQ=0.694;LDAF=0.0236;AVGPOST=0.9823;RSQ=0.6993;ERATE=0.0028;THETA=0.0020;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62435969 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.972;LDAF=0.1998;AVGPOST=0.9880;RSQ=0.9719;ERATE=0.0017;THETA=0.0003;AC=429;AN=2184 GT:DS:GL:BD 0.19642857 0 1 62435972 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0213;AVGPOST=0.9994;RSQ=0.9874;ERATE=0.0003;THETA=0.0007;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 62435982 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0285;AVGPOST=0.9988;RSQ=0.9841;ERATE=0.0003;THETA=0.0004;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 62435991 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0031;AVGPOST=0.9989;RSQ=0.8344;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62436002 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6402;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62436051 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62436098 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7532;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62436223 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6046;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62436225 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0072;AVGPOST=0.9986;RSQ=0.9126;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62436380 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6712;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62436407 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0296;AVGPOST=0.9991;RSQ=0.9900;ERATE=0.0003;THETA=0.0005;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 62436449 rs57423507 GCCACCACAC G 4710 PASS INDEL;BAVGPOST=0.993;BRSQ=0.842;LDAF=0.0223;AVGPOST=0.9955;RSQ=0.9286;ERATE=0.0003;THETA=0.0012;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 62436556 . G GAC 26367 PASS INDEL;BAVGPOST=0.995;BRSQ=0.984;LDAF=0.1869;AVGPOST=0.9964;RSQ=0.9912;ERATE=0.0003;THETA=0.0005;AC=408;AN=2184 GT:DS:GL:BD 0.18681319 0 1 62436558 . T TAA 27160 PASS INDEL;BAVGPOST=0.995;BRSQ=0.984;LDAF=0.1869;AVGPOST=0.9944;RSQ=0.9871;ERATE=0.0005;THETA=0.0005;AC=405;AN=2184 GT:DS:GL:BD 0.18543956 0 1 62436650 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.909;LDAF=0.0124;AVGPOST=0.9989;RSQ=0.9631;ERATE=0.0003;THETA=0.0008;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62436661 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8399;ERATE=0.0003;THETA=0.0059;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62436731 . G GT 194 PASS INDEL;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0036;AVGPOST=0.9963;RSQ=0.5958;ERATE=0.0008;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62436732 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8081;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62436784 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5073;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62436929 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2566;AVGPOST=0.9978;RSQ=0.9962;ERATE=0.0003;THETA=0.0005;AC=559;AN=2184 GT:DS:GL:BD 0.25595239 0 1 62437058 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.800;LDAF=0.0026;AVGPOST=0.9980;RSQ=0.6781;ERATE=0.0006;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62437070 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6733;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62437219 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5095;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62437298 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5715;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62437385 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0235;AVGPOST=0.9968;RSQ=0.9551;ERATE=0.0003;THETA=0.0007;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 62437524 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.919;LDAF=0.0143;AVGPOST=0.9962;RSQ=0.9008;ERATE=0.0003;THETA=0.0008;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62437531 MERGED_DEL_2_3748 GGTACCTGTAGTCCCATCTATTTGGGCGGCTGAAGCAAAAGGATCACTTGAACACGGGAGGTTGAGGCTGCAGTGAGCCATGACCATACCACTGCACTCCAACATGGGTGACAGAGTGAGACCTTATCTCAAAATAAATAAATAAATAAGTCTGAGCAAAAATAATTATGTTTAGATTGAATCTGTCTTA G . . SV;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9370;ERATE=0.0003;THETA=0.0003;CIEND=-70,83;CIPOS=-93,64;END=62452416;HOMLEN=2;HOMSEQ=GT;SOURCE=BreakDancer_62437534_62452424,EM GT:DS:GL:BD 0.00320513 0 1 62437558 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5148;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62437688 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62437862 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7986;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62437872 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.2169;AVGPOST=0.9960;RSQ=0.9923;ERATE=0.0004;THETA=0.0010;AC=471;AN=2184 GT:DS:GL:BD 0.21565934 0 1 62437927 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.810;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8703;ERATE=0.0003;THETA=0.0055;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62437932 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6563;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62437937 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.7701;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62437945 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.661;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5897;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62438080 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62438160 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4826;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62438246 . AG A 123 PASS INDEL;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5326;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62438308 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62438538 rs71050186 A ATG 25525 PASS INDEL;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1891;AVGPOST=0.9983;RSQ=0.9953;ERATE=0.0005;THETA=0.0003;AC=411;AN=2184 GT:DS:GL:BD 0.18818681 0 1 62438551 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.823;LDAF=0.0120;AVGPOST=0.9948;RSQ=0.8293;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 62438640 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6797;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62438674 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5736;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62438676 . C CA 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.731;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8628;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62438744 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0285;AVGPOST=0.9987;RSQ=0.9825;ERATE=0.0005;THETA=0.0002;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 62438748 . TA T 208 PASS INDEL;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0026;AVGPOST=0.9966;RSQ=0.5228;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62438752 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62438893 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0120;AVGPOST=0.9987;RSQ=0.9653;ERATE=0.0003;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62438910 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.1887;AVGPOST=0.9989;RSQ=0.9971;ERATE=0.0004;THETA=0.0023;AC=411;AN=2184 GT:DS:GL:BD 0.18818681 0 1 62439033 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0022;AVGPOST=0.9995;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62439259 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8648;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62439277 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8648;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62439303 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8061;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62439363 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0333;AVGPOST=0.9994;RSQ=0.9929;ERATE=0.0003;THETA=0.0024;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 62439387 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0387;AVGPOST=0.9972;RSQ=0.9762;ERATE=0.0003;THETA=0.0006;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 62439454 . T TA 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62439478 . AT A 204 PASS INDEL;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7040;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62439550 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.1883;AVGPOST=0.9984;RSQ=0.9963;ERATE=0.0004;THETA=0.0006;AC=409;AN=2184 GT:DS:GL:BD 0.18727106 0 1 62439639 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0266;AVGPOST=0.9996;RSQ=0.9940;ERATE=0.0003;THETA=0.0005;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 62439715 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9244;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62439847 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0236;AVGPOST=0.9987;RSQ=0.9761;ERATE=0.0003;THETA=0.0005;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 62439877 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0136;AVGPOST=0.9999;RSQ=0.9956;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62439886 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5642;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62440059 rs58200237 A ATC 1603 PASS INDEL;BAVGPOST=0.979;BRSQ=0.832;LDAF=0.0847;AVGPOST=0.9393;RSQ=0.7177;ERATE=0.0073;THETA=0.0030;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 62440074 . TCTC T 1144 PASS INDEL;BAVGPOST=0.988;BRSQ=0.731;LDAF=0.0246;AVGPOST=0.9922;RSQ=0.8719;ERATE=0.0008;THETA=0.0005;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 62440078 rs67270322 T TC 1508 PASS INDEL;BAVGPOST=0.979;BRSQ=0.832;LDAF=0.0957;AVGPOST=0.9273;RSQ=0.6841;ERATE=0.0079;THETA=0.0005;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 62440116 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0473;AVGPOST=0.9981;RSQ=0.9841;ERATE=0.0004;THETA=0.0007;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 62440146 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.758;LDAF=0.0026;AVGPOST=0.9957;RSQ=0.3146;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62440150 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5253;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62440160 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0028;AVGPOST=0.9981;RSQ=0.7016;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62440178 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7543;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62440277 . AAAAC A 241 PASS INDEL;BAVGPOST=0.999;BRSQ=0.756;LDAF=0.0033;AVGPOST=0.9972;RSQ=0.7152;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62440576 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.824;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62440640 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0040;AVGPOST=0.9996;RSQ=0.9647;ERATE=0.0003;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62440673 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.9109;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62440710 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7970;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62440763 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.835;LDAF=0.0044;AVGPOST=0.9989;RSQ=0.8867;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62440764 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0038;AVGPOST=0.9968;RSQ=0.6746;ERATE=0.0005;THETA=0.0017;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62440784 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1882;AVGPOST=0.9987;RSQ=0.9966;ERATE=0.0003;THETA=0.0003;AC=409;AN=2184 GT:DS:GL:BD 0.18727106 0 1 62440812 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5835;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62440971 . CCTT C 265 PASS INDEL;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6759;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62440995 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0137;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62441225 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.994;LDAF=0.6048;AVGPOST=0.9951;RSQ=0.9932;ERATE=0.0004;THETA=0.0007;AC=1320;AN=2184 GT:DS:GL:BD 0.60439563 1 1 62441291 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62441475 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7823;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62441705 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62441788 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2189;AVGPOST=0.9989;RSQ=0.9978;ERATE=0.0003;THETA=0.0008;AC=477;AN=2184 GT:DS:GL:BD 0.21840659 0 1 62441803 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9997;RSQ=0.9789;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62441804 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=0.9988;RSQ=0.9353;ERATE=0.0003;THETA=0.0013;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62441834 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62441937 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0145;AVGPOST=0.9984;RSQ=0.9581;ERATE=0.0003;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62441965 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0142;AVGPOST=0.9990;RSQ=0.9732;ERATE=0.0003;THETA=0.0002;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62441973 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0087;AVGPOST=0.9990;RSQ=0.9507;ERATE=0.0004;THETA=0.0009;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62441996 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1878;AVGPOST=0.9991;RSQ=0.9976;ERATE=0.0003;THETA=0.0004;AC=409;AN=2184 GT:DS:GL:BD 0.18727106 0 1 62441998 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1875;AVGPOST=0.9981;RSQ=0.9950;ERATE=0.0004;THETA=0.0007;AC=409;AN=2184 GT:DS:GL:BD 0.18727106 0 1 62442025 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0302;AVGPOST=0.9999;RSQ=0.9986;ERATE=0.0003;THETA=0.0007;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 62442057 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5713;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62442076 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0076;AVGPOST=0.9979;RSQ=0.8890;ERATE=0.0004;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62442110 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.855;LDAF=0.0095;AVGPOST=0.9969;RSQ=0.8690;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62442115 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.698;LDAF=0.0058;AVGPOST=0.9983;RSQ=0.8695;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62442198 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0011;AVGPOST=0.9983;RSQ=0.3833;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62442219 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0770;AVGPOST=0.9987;RSQ=0.9931;ERATE=0.0003;THETA=0.0005;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 62442226 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62442272 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8177;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62442274 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.0763;AVGPOST=0.9982;RSQ=0.9902;ERATE=0.0006;THETA=0.0004;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 62442368 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.0756;AVGPOST=0.9990;RSQ=0.9950;ERATE=0.0003;THETA=0.0020;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 62442393 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0300;AVGPOST=0.9991;RSQ=0.9873;ERATE=0.0003;THETA=0.0005;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 62442425 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.719;LDAF=0.0047;AVGPOST=0.9980;RSQ=0.8397;ERATE=0.0003;THETA=0.0011;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62442450 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62442457 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0769;AVGPOST=0.9992;RSQ=0.9957;ERATE=0.0003;THETA=0.0008;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 62442549 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0027;AVGPOST=0.9980;RSQ=0.7495;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62442753 . TTTTG T 28 PASS INDEL;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62442846 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0026;AVGPOST=0.9973;RSQ=0.5940;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62442876 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5466;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62442885 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8410;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62442897 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1886;AVGPOST=0.9969;RSQ=0.9923;ERATE=0.0008;THETA=0.0007;AC=410;AN=2184 GT:DS:GL:BD 0.18772894 0 1 62442929 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.684;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9323;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62443068 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8465;ERATE=0.0003;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62443092 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62443167 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6464;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62443194 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0025;AVGPOST=0.9979;RSQ=0.6629;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62443246 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.1888;AVGPOST=0.9962;RSQ=0.9913;ERATE=0.0005;THETA=0.0010;AC=410;AN=2184 GT:DS:GL:BD 0.18772894 0 1 62443258 . T TC 138 PASS INDEL;BAVGPOST=0.998;BRSQ=0.708;LDAF=0.0074;AVGPOST=0.9932;RSQ=0.6457;ERATE=0.0005;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62443281 . G GT 692 PASS INDEL;BAVGPOST=0.952;BRSQ=0.563;LDAF=0.0599;AVGPOST=0.9439;RSQ=0.6442;ERATE=0.0046;THETA=0.0005;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 62443283 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1412;AVGPOST=0.9984;RSQ=0.9953;ERATE=0.0004;THETA=0.0007;AC=307;AN=2184 GT:DS:GL:BD 0.14056776 0 1 62443354 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1445;AVGPOST=0.9970;RSQ=0.9913;ERATE=0.0006;THETA=0.0020;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 62443396 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0127;AVGPOST=0.9987;RSQ=0.9570;ERATE=0.0004;THETA=0.0026;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62443436 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0068;AVGPOST=0.9992;RSQ=0.9513;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62443471 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0449;AVGPOST=0.9979;RSQ=0.9800;ERATE=0.0004;THETA=0.0008;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 62443581 . AT A 376 PASS INDEL;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0085;AVGPOST=0.9924;RSQ=0.6496;ERATE=0.0008;THETA=0.0018;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62443614 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0256;AVGPOST=0.9965;RSQ=0.9501;ERATE=0.0006;THETA=0.0003;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 62443645 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.805;LDAF=0.0198;AVGPOST=0.9943;RSQ=0.8900;ERATE=0.0004;THETA=0.0013;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 62443660 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0308;AVGPOST=0.9993;RSQ=0.9916;ERATE=0.0003;THETA=0.0004;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 62443752 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62443868 . TCTTC T 7923 PASS INDEL;BAVGPOST=0.731;BRSQ=0.514;LDAF=0.4941;AVGPOST=0.6913;RSQ=0.4768;ERATE=0.0824;THETA=0.0006;AC=1078;AN=2184 GT:DS:GL:BD 0.49358973 0 1 62443899 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.945;BRSQ=0.699;LDAF=0.1213;AVGPOST=0.9088;RSQ=0.6663;ERATE=0.0126;THETA=0.0004;AC=212;AN=2184 GT:DS:GL:BD 0.09706960 0 1 62443917 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.811;LDAF=0.0753;AVGPOST=0.9468;RSQ=0.7266;ERATE=0.0052;THETA=0.0008;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 62444094 rs113440349 TG T 2107 PASS INDEL;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0303;AVGPOST=0.9978;RSQ=0.9682;ERATE=0.0005;THETA=0.0005;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 62444183 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0123;AVGPOST=0.9977;RSQ=0.9161;ERATE=0.0007;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 62444343 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0063;AVGPOST=0.9984;RSQ=0.8871;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62444366 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0462;AVGPOST=0.9981;RSQ=0.9856;ERATE=0.0004;THETA=0.0022;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 62444406 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62444411 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.977;LDAF=0.0324;AVGPOST=0.9992;RSQ=0.9890;ERATE=0.0005;THETA=0.0005;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 62444591 . C CA 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4556;ERATE=0.0005;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62444617 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0023;AVGPOST=0.9971;RSQ=0.5361;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62444639 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9797;ERATE=0.0003;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62444673 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7369;ERATE=0.0008;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62444676 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.1517;AVGPOST=0.9949;RSQ=0.9858;ERATE=0.0003;THETA=0.0022;AC=333;AN=2184 GT:DS:GL:BD 0.15247253 0 1 62444815 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.755;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0050;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62445049 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0125;AVGPOST=0.9997;RSQ=0.9893;ERATE=0.0003;THETA=0.0027;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 62445060 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.982;LDAF=0.8067;AVGPOST=0.9881;RSQ=0.9708;ERATE=0.0008;THETA=0.0004;AC=1765;AN=2184 GT:DS:GL:BD 0.80815017 1 1 62445097 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0054;AVGPOST=0.9970;RSQ=0.7710;ERATE=0.0005;THETA=0.0062;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62445102 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.955;BRSQ=0.890;LDAF=0.7730;AVGPOST=0.9017;RSQ=0.7968;ERATE=0.0168;THETA=0.0010;AC=1746;AN=2184 GT:DS:GL:BD 0.79945058 1 1 62445196 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0051;AVGPOST=0.9974;RSQ=0.8000;ERATE=0.0005;THETA=0.0021;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62445198 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.970;LDAF=0.8054;AVGPOST=0.9892;RSQ=0.9743;ERATE=0.0007;THETA=0.0089;AC=1765;AN=2184 GT:DS:GL:BD 0.80815017 1 1 62445458 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62445601 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8665;ERATE=0.0003;THETA=0.0117;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62445706 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.4205;AVGPOST=0.9966;RSQ=0.9937;ERATE=0.0004;THETA=0.0034;AC=918;AN=2184 GT:DS:GL:BD 0.42032966 0 1 62445710 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1508;AVGPOST=0.9969;RSQ=0.9912;ERATE=0.0005;THETA=0.0005;AC=328;AN=2184 GT:DS:GL:BD 0.15018316 0 1 62445889 . TG T 202 PASS INDEL;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7302;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62445893 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0238;AVGPOST=0.9999;RSQ=0.9973;ERATE=0.0003;THETA=0.0003;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 62445906 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0128;AVGPOST=0.9995;RSQ=0.9844;ERATE=0.0003;THETA=0.0010;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62445912 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1498;AVGPOST=0.9985;RSQ=0.9951;ERATE=0.0003;THETA=0.0005;AC=328;AN=2184 GT:DS:GL:BD 0.15018316 0 1 62445921 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.738;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62446154 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.963;LDAF=0.1501;AVGPOST=0.9915;RSQ=0.9740;ERATE=0.0012;THETA=0.0004;AC=326;AN=2184 GT:DS:GL:BD 0.14926741 0 1 62446295 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0070;AVGPOST=0.9991;RSQ=0.9450;ERATE=0.0004;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62446391 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6910;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62446424 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0024;AVGPOST=0.9978;RSQ=0.6829;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62446452 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.831;LDAF=0.0109;AVGPOST=0.9950;RSQ=0.8289;ERATE=0.0008;THETA=0.0009;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62446468 . ACTCAG A 192 PASS INDEL;BAVGPOST=1.000;BRSQ=0.690;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4684;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62446481 . CAGG C 73 PASS INDEL;BAVGPOST=0.999;BRSQ=0.568;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5917;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62446505 . CTT C 65 PASS INDEL;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6258;ERATE=0.0003;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62446694 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0032;AVGPOST=1.0000;RSQ=0.9932;ERATE=0.0003;THETA=0.0022;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62446802 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0203;AVGPOST=0.9992;RSQ=0.9864;ERATE=0.0003;THETA=0.0004;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 62446813 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6714;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62446824 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.566;LDAF=0.0035;AVGPOST=0.9962;RSQ=0.5886;ERATE=0.0009;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62446874 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0041;AVGPOST=0.9977;RSQ=0.7860;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62447027 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7905;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62447077 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2833;AVGPOST=0.9982;RSQ=0.9958;ERATE=0.0005;THETA=0.0007;AC=619;AN=2184 GT:DS:GL:BD 0.28342491 0 1 62447163 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1236;AVGPOST=0.9990;RSQ=0.9968;ERATE=0.0003;THETA=0.0004;AC=270;AN=2184 GT:DS:GL:BD 0.12362637 0 1 62447164 . TA T 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.5224;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62447179 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9748;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62447208 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1468;AVGPOST=0.9997;RSQ=0.9989;ERATE=0.0003;THETA=0.0004;AC=321;AN=2184 GT:DS:GL:BD 0.14697802 0 1 62447253 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0249;AVGPOST=0.9994;RSQ=0.9899;ERATE=0.0004;THETA=0.0005;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 62447302 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2852;AVGPOST=0.9989;RSQ=0.9975;ERATE=0.0004;THETA=0.0005;AC=623;AN=2184 GT:DS:GL:BD 0.28525642 0 1 62447447 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.943;LDAF=0.1162;AVGPOST=0.9913;RSQ=0.9705;ERATE=0.0007;THETA=0.0003;AC=257;AN=2184 GT:DS:GL:BD 0.11767399 0 1 62447495 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0026;AVGPOST=0.9972;RSQ=0.5791;ERATE=0.0004;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62447633 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2922;AVGPOST=0.9976;RSQ=0.9956;ERATE=0.0006;THETA=0.0005;AC=638;AN=2184 GT:DS:GL:BD 0.29212454 0 1 62447636 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0022;AVGPOST=0.9970;RSQ=0.5502;ERATE=0.0004;THETA=0.0030;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62447689 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.974;LDAF=0.0256;AVGPOST=0.9979;RSQ=0.9654;ERATE=0.0003;THETA=0.0006;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 62447899 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0398;AVGPOST=0.9984;RSQ=0.9841;ERATE=0.0004;THETA=0.0007;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 62447908 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9452;ERATE=0.0003;THETA=0.0039;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62447931 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7841;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62448152 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2829;AVGPOST=0.9993;RSQ=0.9984;ERATE=0.0004;THETA=0.0009;AC=618;AN=2184 GT:DS:GL:BD 0.28296703 0 1 62448245 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3246;AVGPOST=0.9991;RSQ=0.9984;ERATE=0.0003;THETA=0.0008;AC=709;AN=2184 GT:DS:GL:BD 0.32463369 0 1 62448269 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9524;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62448354 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.724;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62448357 rs71733270 GA G 18345 PASS INDEL;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.3145;AVGPOST=0.9864;RSQ=0.9759;ERATE=0.0020;THETA=0.0005;AC=689;AN=2184 GT:DS:GL:BD 0.31547618 0 1 62448431 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0002;AVGPOST=0.9997;RSQ=0.0498;ERATE=0.0004;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62448451 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0326;AVGPOST=0.9996;RSQ=0.9950;ERATE=0.0003;THETA=0.0024;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 62448471 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8558;ERATE=0.0003;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62448522 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1220;AVGPOST=0.9990;RSQ=0.9975;ERATE=0.0003;THETA=0.0005;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 62448525 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0179;AVGPOST=0.9986;RSQ=0.9657;ERATE=0.0004;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62448535 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0256;AVGPOST=0.9983;RSQ=0.9779;ERATE=0.0003;THETA=0.0004;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 62448555 . AT A 118 PASS INDEL;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7786;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62448580 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3222;AVGPOST=0.9998;RSQ=0.9995;ERATE=0.0003;THETA=0.0004;AC=704;AN=2184 GT:DS:GL:BD 0.32234433 0 1 62448584 . C CA 41 PASS INDEL;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0017;AVGPOST=0.9987;RSQ=0.6580;ERATE=0.0007;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62448666 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.767;LDAF=0.0018;AVGPOST=0.9994;RSQ=0.8558;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62448692 rs35574295 AT A 11963 PASS INDEL;BAVGPOST=0.985;BRSQ=0.963;LDAF=0.2787;AVGPOST=0.9955;RSQ=0.9908;ERATE=0.0011;THETA=0.0004;AC=610;AN=2184 GT:DS:GL:BD 0.27930403 0 1 62448715 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.6317;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62448731 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.6070;AVGPOST=0.9940;RSQ=0.9902;ERATE=0.0006;THETA=0.0005;AC=1324;AN=2184 GT:DS:GL:BD 0.60622710 1 1 62448822 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0134;AVGPOST=0.9997;RSQ=0.9883;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 62448889 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0335;AVGPOST=0.9996;RSQ=0.9956;ERATE=0.0003;THETA=0.0002;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 62448945 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1336;AVGPOST=0.9974;RSQ=0.9920;ERATE=0.0005;THETA=0.0004;AC=290;AN=2184 GT:DS:GL:BD 0.13278389 0 1 62449012 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5981;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62449020 rs77481154 G GA 20655 PASS INDEL;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2809;AVGPOST=0.9974;RSQ=0.9947;ERATE=0.0006;THETA=0.0004;AC=614;AN=2184 GT:DS:GL:BD 0.28113553 0 1 62449086 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0264;AVGPOST=0.9984;RSQ=0.9796;ERATE=0.0003;THETA=0.0003;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 62449102 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2805;AVGPOST=0.9993;RSQ=0.9983;ERATE=0.0005;THETA=0.0003;AC=612;AN=2184 GT:DS:GL:BD 0.28021979 0 1 62449125 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.800;LDAF=0.0026;AVGPOST=0.9985;RSQ=0.7612;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62449213 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.915;LDAF=0.0096;AVGPOST=0.9991;RSQ=0.9580;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62449254 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0052;AVGPOST=0.9987;RSQ=0.9091;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62449268 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2802;AVGPOST=0.9997;RSQ=0.9993;ERATE=0.0003;THETA=0.0002;AC=612;AN=2184 GT:DS:GL:BD 0.28021979 0 1 62449293 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.6194;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62449332 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8703;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62449335 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62449339 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2801;AVGPOST=0.9995;RSQ=0.9988;ERATE=0.0004;THETA=0.0003;AC=612;AN=2184 GT:DS:GL:BD 0.28021979 0 1 62449443 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1340;AVGPOST=0.9997;RSQ=0.9987;ERATE=0.0004;THETA=0.0007;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 62449492 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0128;AVGPOST=0.9998;RSQ=0.9930;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62449514 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1335;AVGPOST=0.9990;RSQ=0.9971;ERATE=0.0003;THETA=0.0004;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 62449558 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.636;LDAF=0.0089;AVGPOST=0.9943;RSQ=0.7704;ERATE=0.0004;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62449562 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.978;LDAF=0.2803;AVGPOST=0.9929;RSQ=0.9862;ERATE=0.0014;THETA=0.0006;AC=612;AN=2184 GT:DS:GL:BD 0.28021979 0 1 62449624 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2805;AVGPOST=0.9956;RSQ=0.9913;ERATE=0.0007;THETA=0.0007;AC=612;AN=2184 GT:DS:GL:BD 0.28021979 0 1 62449691 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0097;AVGPOST=0.9996;RSQ=0.9802;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62449760 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7422;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62449815 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.831;LDAF=0.0051;AVGPOST=0.9975;RSQ=0.7961;ERATE=0.0005;THETA=0.0016;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62449821 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1215;AVGPOST=0.9984;RSQ=0.9943;ERATE=0.0004;THETA=0.0029;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 62449830 . A AT 25 PASS INDEL;BAVGPOST=0.989;BRSQ=0.617;LDAF=0.0172;AVGPOST=0.9970;RSQ=0.9270;ERATE=0.0007;THETA=0.0006;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 62449832 . TA T 948 PASS INDEL;BAVGPOST=0.989;BRSQ=0.808;LDAF=0.0346;AVGPOST=0.9787;RSQ=0.7626;ERATE=0.0032;THETA=0.0009;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 62449836 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.871;BRSQ=0.745;LDAF=0.4178;AVGPOST=0.8289;RSQ=0.7198;ERATE=0.0659;THETA=0.0007;AC=878;AN=2184 GT:DS:GL:BD 0.40201464 0 1 62449838 . T TA 480 PASS INDEL;BAVGPOST=0.975;BRSQ=0.586;LDAF=0.0432;AVGPOST=0.9576;RSQ=0.6003;ERATE=0.0054;THETA=0.0004;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 62449854 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0821;AVGPOST=0.9933;RSQ=0.9672;ERATE=0.0005;THETA=0.0005;AC=177;AN=2184 GT:DS:GL:BD 0.08104396 0 1 62449902 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.976;LDAF=0.2856;AVGPOST=0.9918;RSQ=0.9845;ERATE=0.0006;THETA=0.0004;AC=625;AN=2184 GT:DS:GL:BD 0.28617215 0 1 62449943 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.940;LDAF=0.2828;AVGPOST=0.9895;RSQ=0.9801;ERATE=0.0007;THETA=0.0011;AC=622;AN=2184 GT:DS:GL:BD 0.28479853 0 1 62449957 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.937;LDAF=0.2734;AVGPOST=0.9876;RSQ=0.9753;ERATE=0.0011;THETA=0.0039;AC=601;AN=2184 GT:DS:GL:BD 0.27518314 0 1 62449978 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.617;LDAF=0.0018;AVGPOST=0.9985;RSQ=0.6397;ERATE=0.0008;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62449989 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0249;AVGPOST=0.9996;RSQ=0.9923;ERATE=0.0003;THETA=0.0009;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 62450037 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.961;LDAF=0.2426;AVGPOST=0.9878;RSQ=0.9738;ERATE=0.0008;THETA=0.0007;AC=533;AN=2184 GT:DS:GL:BD 0.24404761 0 1 62450052 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.745;LDAF=0.0086;AVGPOST=0.9962;RSQ=0.8163;ERATE=0.0006;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62450118 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0060;AVGPOST=0.9993;RSQ=0.9482;ERATE=0.0004;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62450142 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9323;ERATE=0.0003;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62450189 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62450263 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5964;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62450334 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2822;AVGPOST=0.9989;RSQ=0.9977;ERATE=0.0003;THETA=0.0005;AC=616;AN=2184 GT:DS:GL:BD 0.28205130 0 1 62450369 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1146;AVGPOST=0.9954;RSQ=0.9851;ERATE=0.0009;THETA=0.0007;AC=251;AN=2184 GT:DS:GL:BD 0.11492674 0 1 62450392 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5887;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62450400 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62450416 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0258;AVGPOST=0.9994;RSQ=0.9898;ERATE=0.0004;THETA=0.0004;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 62450458 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0073;AVGPOST=0.9970;RSQ=0.8516;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62450527 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0325;AVGPOST=0.9987;RSQ=0.9850;ERATE=0.0003;THETA=0.0007;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 62450621 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0091;AVGPOST=0.9996;RSQ=0.9818;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62450624 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0093;AVGPOST=0.9994;RSQ=0.9698;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62450625 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0098;AVGPOST=0.9992;RSQ=0.9664;ERATE=0.0003;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62450635 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7640;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62450698 . G GT 74 PASS INDEL;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5665;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62450727 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7339;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62450778 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0095;AVGPOST=0.9989;RSQ=0.9586;ERATE=0.0003;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62450782 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.972;LDAF=0.3152;AVGPOST=0.9864;RSQ=0.9771;ERATE=0.0006;THETA=0.0021;AC=693;AN=2184 GT:DS:GL:BD 0.31730768 0 1 62450809 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.952;LDAF=0.3066;AVGPOST=0.9803;RSQ=0.9655;ERATE=0.0004;THETA=0.0004;AC=679;AN=2184 GT:DS:GL:BD 0.31089744 0 1 62450812 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.853;LDAF=0.0044;AVGPOST=0.9983;RSQ=0.8455;ERATE=0.0005;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62450814 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.950;LDAF=0.2674;AVGPOST=0.9827;RSQ=0.9681;ERATE=0.0003;THETA=0.0004;AC=588;AN=2184 GT:DS:GL:BD 0.26923078 0 1 62450825 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.949;LDAF=0.2674;AVGPOST=0.9816;RSQ=0.9652;ERATE=0.0006;THETA=0.0009;AC=592;AN=2184 GT:DS:GL:BD 0.27106228 0 1 62450846 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.950;LDAF=0.2817;AVGPOST=0.9863;RSQ=0.9748;ERATE=0.0007;THETA=0.0005;AC=621;AN=2184 GT:DS:GL:BD 0.28434065 0 1 62450853 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.920;LDAF=0.0235;AVGPOST=0.9965;RSQ=0.9426;ERATE=0.0004;THETA=0.0003;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 62450893 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0096;AVGPOST=0.9989;RSQ=0.9437;ERATE=0.0004;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62450899 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0087;AVGPOST=0.9987;RSQ=0.9347;ERATE=0.0003;THETA=0.0034;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62450938 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.969;LDAF=0.1478;AVGPOST=0.9916;RSQ=0.9775;ERATE=0.0007;THETA=0.0027;AC=322;AN=2184 GT:DS:GL:BD 0.14743590 0 1 62450956 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0087;AVGPOST=0.9990;RSQ=0.9475;ERATE=0.0005;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62450962 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0287;AVGPOST=0.9953;RSQ=0.9422;ERATE=0.0004;THETA=0.0008;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 62451022 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0128;AVGPOST=0.9999;RSQ=0.9965;ERATE=0.0003;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62451027 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9133;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62451029 rs111968664 TA T 4319 PASS INDEL;BAVGPOST=0.997;BRSQ=0.955;LDAF=0.0292;AVGPOST=0.9968;RSQ=0.9571;ERATE=0.0006;THETA=0.0003;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 62451074 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2823;AVGPOST=0.9979;RSQ=0.9957;ERATE=0.0003;THETA=0.0008;AC=617;AN=2184 GT:DS:GL:BD 0.28250915 0 1 62451116 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.730;LDAF=0.0022;AVGPOST=0.9973;RSQ=0.5304;ERATE=0.0006;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62451151 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6710;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62451171 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2910;AVGPOST=0.9986;RSQ=0.9968;ERATE=0.0005;THETA=0.0021;AC=636;AN=2184 GT:DS:GL:BD 0.29120880 0 1 62451247 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0045;AVGPOST=0.9993;RSQ=0.9310;ERATE=0.0004;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62451292 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2908;AVGPOST=0.9983;RSQ=0.9963;ERATE=0.0005;THETA=0.0026;AC=635;AN=2184 GT:DS:GL:BD 0.29075092 0 1 62451338 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.6973;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62451359 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0248;AVGPOST=0.9998;RSQ=0.9957;ERATE=0.0003;THETA=0.0003;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 62451433 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2932;AVGPOST=0.9977;RSQ=0.9956;ERATE=0.0006;THETA=0.0003;AC=640;AN=2184 GT:DS:GL:BD 0.29304031 0 1 62451578 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2838;AVGPOST=0.9991;RSQ=0.9980;ERATE=0.0004;THETA=0.0003;AC=620;AN=2184 GT:DS:GL:BD 0.28388280 0 1 62451614 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0029;AVGPOST=0.9982;RSQ=0.7415;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62451631 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7641;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62451661 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2937;AVGPOST=0.9964;RSQ=0.9939;ERATE=0.0006;THETA=0.0004;AC=640;AN=2184 GT:DS:GL:BD 0.29304031 0 1 62451773 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2931;AVGPOST=0.9995;RSQ=0.9988;ERATE=0.0004;THETA=0.0004;AC=640;AN=2184 GT:DS:GL:BD 0.29304031 0 1 62451784 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7533;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62451792 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2836;AVGPOST=0.9968;RSQ=0.9934;ERATE=0.0006;THETA=0.0004;AC=618;AN=2184 GT:DS:GL:BD 0.28296703 0 1 62451857 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5400;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62451871 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0018;AVGPOST=0.9988;RSQ=0.8050;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62451998 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2930;AVGPOST=0.9992;RSQ=0.9981;ERATE=0.0004;THETA=0.0005;AC=640;AN=2184 GT:DS:GL:BD 0.29304031 0 1 62452005 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7479;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62452009 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0252;AVGPOST=0.9989;RSQ=0.9846;ERATE=0.0003;THETA=0.0002;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 62452026 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2913;AVGPOST=0.9986;RSQ=0.9973;ERATE=0.0004;THETA=0.0003;AC=636;AN=2184 GT:DS:GL:BD 0.29120880 0 1 62452116 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0129;AVGPOST=0.9989;RSQ=0.9647;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62452173 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2896;AVGPOST=0.9912;RSQ=0.9830;ERATE=0.0025;THETA=0.0029;AC=631;AN=2184 GT:DS:GL:BD 0.28891942 0 1 62452213 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0092;AVGPOST=0.9976;RSQ=0.8918;ERATE=0.0004;THETA=0.0008;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62452280 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0300;AVGPOST=0.9972;RSQ=0.9661;ERATE=0.0005;THETA=0.0005;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 62452472 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62452521 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3330;AVGPOST=0.9953;RSQ=0.9916;ERATE=0.0012;THETA=0.0003;AC=729;AN=2184 GT:DS:GL:BD 0.33379120 0 1 62452619 rs61639925 C CT 10255 PASS INDEL;BAVGPOST=0.993;BRSQ=0.980;LDAF=0.1861;AVGPOST=0.9867;RSQ=0.9675;ERATE=0.0025;THETA=0.0035;AC=403;AN=2184 GT:DS:GL:BD 0.18452381 0 1 62452647 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0222;AVGPOST=0.9991;RSQ=0.9812;ERATE=0.0004;THETA=0.0005;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 62452692 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62452711 . A AC 410 PASS INDEL;BAVGPOST=0.997;BRSQ=0.822;LDAF=0.0060;AVGPOST=0.9977;RSQ=0.8491;ERATE=0.0005;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62452737 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5869;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62452747 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.936;LDAF=0.0181;AVGPOST=0.9991;RSQ=0.9781;ERATE=0.0004;THETA=0.0005;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 62452749 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2732;AVGPOST=0.9977;RSQ=0.9952;ERATE=0.0003;THETA=0.0003;AC=597;AN=2184 GT:DS:GL:BD 0.27335164 0 1 62452778 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0236;AVGPOST=0.9984;RSQ=0.9749;ERATE=0.0003;THETA=0.0006;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 62452807 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0019;AVGPOST=0.9970;RSQ=0.4242;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62452849 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.793;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8151;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62453069 . C CT 241 PASS INDEL;BAVGPOST=0.946;BRSQ=0.496;LDAF=0.0652;AVGPOST=0.9377;RSQ=0.6239;ERATE=0.0058;THETA=0.0005;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 62453072 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0228;AVGPOST=0.9982;RSQ=0.9635;ERATE=0.0007;THETA=0.0003;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 62453111 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.917;LDAF=0.0049;AVGPOST=0.9984;RSQ=0.8695;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62453114 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0139;AVGPOST=0.9995;RSQ=0.9849;ERATE=0.0003;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62453117 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.936;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8037;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62453152 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.5520;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62453168 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62453169 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.983;LDAF=0.9342;AVGPOST=0.9938;RSQ=0.9635;ERATE=0.0003;THETA=0.0006;AC=2041;AN=2184 GT:DS:GL:BD 0.93452382 1 1 62453222 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0248;AVGPOST=0.9992;RSQ=0.9849;ERATE=0.0004;THETA=0.0006;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 62453297 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1152;AVGPOST=0.9983;RSQ=0.9944;ERATE=0.0003;THETA=0.0003;AC=251;AN=2184 GT:DS:GL:BD 0.11492674 0 1 62453370 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9895;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62453483 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0120;AVGPOST=0.9984;RSQ=0.9496;ERATE=0.0003;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 62453523 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2497;AVGPOST=0.9984;RSQ=0.9965;ERATE=0.0005;THETA=0.0005;AC=545;AN=2184 GT:DS:GL:BD 0.24954212 0 1 62453692 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.969;LDAF=0.0344;AVGPOST=0.9971;RSQ=0.9654;ERATE=0.0006;THETA=0.0004;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 62453764 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2698;AVGPOST=0.9923;RSQ=0.9842;ERATE=0.0012;THETA=0.0005;AC=592;AN=2184 GT:DS:GL:BD 0.27106228 0 1 62453811 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0246;AVGPOST=0.9978;RSQ=0.9618;ERATE=0.0004;THETA=0.0005;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 62453823 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1264;AVGPOST=0.9995;RSQ=0.9979;ERATE=0.0003;THETA=0.0004;AC=276;AN=2184 GT:DS:GL:BD 0.12637363 0 1 62453846 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6811;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62453852 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0023;AVGPOST=0.9975;RSQ=0.5630;ERATE=0.0007;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62454111 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6072;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62454121 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.6087;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62454140 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.684;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62454263 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7193;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62454365 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1264;AVGPOST=0.9988;RSQ=0.9956;ERATE=0.0004;THETA=0.0003;AC=276;AN=2184 GT:DS:GL:BD 0.12637363 0 1 62454383 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.835;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7797;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62454426 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0223;AVGPOST=0.9995;RSQ=0.9902;ERATE=0.0003;THETA=0.0006;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 62454483 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0007;AVGPOST=0.9987;RSQ=0.2748;ERATE=0.0005;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62454545 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.4923;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62454621 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62454627 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0073;AVGPOST=0.9991;RSQ=0.9477;ERATE=0.0004;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62454700 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0087;AVGPOST=0.9998;RSQ=0.9899;ERATE=0.0003;THETA=0.0008;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62454724 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2718;AVGPOST=0.9974;RSQ=0.9944;ERATE=0.0007;THETA=0.0018;AC=594;AN=2184 GT:DS:GL:BD 0.27197802 0 1 62454784 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1240;AVGPOST=0.9993;RSQ=0.9974;ERATE=0.0004;THETA=0.0004;AC=271;AN=2184 GT:DS:GL:BD 0.12408425 0 1 62454815 rs76396769 CACAGCCA C 278 PASS INDEL;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0024;AVGPOST=0.9986;RSQ=0.7460;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62454824 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6124;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62454903 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62454923 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62455318 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62455340 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6907;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62455397 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7274;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62455407 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0023;AVGPOST=0.9987;RSQ=0.7621;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62455420 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62455455 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7189;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62455573 . AGT A 18 PASS INDEL;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0036;AVGPOST=0.9968;RSQ=0.6698;ERATE=0.0007;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62455578 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8094;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62455658 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1210;AVGPOST=0.9969;RSQ=0.9894;ERATE=0.0009;THETA=0.0006;AC=263;AN=2184 GT:DS:GL:BD 0.12042125 0 1 62455699 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0144;AVGPOST=0.9995;RSQ=0.9848;ERATE=0.0003;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62455739 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0013;AVGPOST=0.9997;RSQ=0.9061;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62455744 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1233;AVGPOST=0.9997;RSQ=0.9989;ERATE=0.0003;THETA=0.0005;AC=269;AN=2184 GT:DS:GL:BD 0.12316850 0 1 62455781 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62455783 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7831;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62455820 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62455821 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62455830 . C CT 40 PASS INDEL;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6295;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62455935 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9852;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62455950 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62455982 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0137;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62456014 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4322;AVGPOST=0.9996;RSQ=0.9995;ERATE=0.0003;THETA=0.0004;AC=944;AN=2184 GT:DS:GL:BD 0.43223444 0 1 62456019 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62456048 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3117;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=681;AN=2184 GT:DS:GL:BD 0.31181318 0 1 62456131 . C CA 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6944;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62456280 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8519;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62456296 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.863;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9307;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62456415 . G GT 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5058;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62456435 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.822;LDAF=0.0025;AVGPOST=0.9994;RSQ=0.8891;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62456516 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6272;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62456641 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0053;AVGPOST=0.9992;RSQ=0.9312;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62456704 . C CT 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5572;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62456753 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62456761 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.864;LDAF=0.0193;AVGPOST=0.9968;RSQ=0.9350;ERATE=0.0004;THETA=0.0006;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 62456771 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0056;AVGPOST=0.9995;RSQ=0.9598;ERATE=0.0004;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62456836 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0781;AVGPOST=0.9991;RSQ=0.9953;ERATE=0.0003;THETA=0.0005;AC=170;AN=2184 GT:DS:GL:BD 0.07783883 0 1 62456869 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.967;LDAF=0.1503;AVGPOST=0.9948;RSQ=0.9853;ERATE=0.0007;THETA=0.0003;AC=327;AN=2184 GT:DS:GL:BD 0.14972527 0 1 62457096 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1237;AVGPOST=0.9985;RSQ=0.9947;ERATE=0.0003;THETA=0.0003;AC=269;AN=2184 GT:DS:GL:BD 0.12316850 0 1 62457155 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0219;AVGPOST=0.9998;RSQ=0.9960;ERATE=0.0003;THETA=0.0005;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 62457206 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6021;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62457288 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0097;AVGPOST=0.9988;RSQ=0.9522;ERATE=0.0003;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62457365 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1249;AVGPOST=0.9997;RSQ=0.9988;ERATE=0.0003;THETA=0.0003;AC=273;AN=2184 GT:DS:GL:BD 0.12500000 0 1 62457533 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0220;AVGPOST=0.9998;RSQ=0.9959;ERATE=0.0003;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 62457635 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6327;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62457712 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1244;AVGPOST=0.9989;RSQ=0.9963;ERATE=0.0003;THETA=0.0004;AC=273;AN=2184 GT:DS:GL:BD 0.12500000 0 1 62457787 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.970;LDAF=0.2683;AVGPOST=0.9960;RSQ=0.9914;ERATE=0.0004;THETA=0.0006;AC=590;AN=2184 GT:DS:GL:BD 0.27014652 0 1 62457843 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.4628;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62457853 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.971;LDAF=0.1246;AVGPOST=0.9972;RSQ=0.9893;ERATE=0.0006;THETA=0.0004;AC=271;AN=2184 GT:DS:GL:BD 0.12408425 0 1 62457978 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.925;LDAF=0.3130;AVGPOST=0.9642;RSQ=0.9363;ERATE=0.0079;THETA=0.0005;AC=688;AN=2184 GT:DS:GL:BD 0.31501833 0 1 62458028 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.653;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.4982;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62458078 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0034;AVGPOST=0.9997;RSQ=0.9558;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62458080 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6096;AVGPOST=0.9969;RSQ=0.9945;ERATE=0.0003;THETA=0.0004;AC=1331;AN=2184 GT:DS:GL:BD 0.60943222 1 1 62458140 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62458201 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7703;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62458220 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0064;AVGPOST=0.9989;RSQ=0.9319;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62458265 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0071;AVGPOST=0.9994;RSQ=0.9577;ERATE=0.0004;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62458275 . AT A 1169 PASS INDEL;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0057;AVGPOST=0.9980;RSQ=0.8458;ERATE=0.0006;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62458338 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62458457 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62458463 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1255;AVGPOST=0.9988;RSQ=0.9959;ERATE=0.0004;THETA=0.0003;AC=274;AN=2184 GT:DS:GL:BD 0.12545788 0 1 62458499 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62458688 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62458716 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.969;LDAF=0.0195;AVGPOST=0.9984;RSQ=0.9704;ERATE=0.0003;THETA=0.0004;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 62458718 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5801;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62458719 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6437;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62459021 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0297;AVGPOST=0.9990;RSQ=0.9876;ERATE=0.0003;THETA=0.0003;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 62459158 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1234;AVGPOST=0.9998;RSQ=0.9992;ERATE=0.0003;THETA=0.0004;AC=269;AN=2184 GT:DS:GL:BD 0.12316850 0 1 62459258 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6096;AVGPOST=0.9981;RSQ=0.9967;ERATE=0.0004;THETA=0.0003;AC=1331;AN=2184 GT:DS:GL:BD 0.60943222 1 1 62459326 rs67007079 CAA C 13225 PASS INDEL;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0528;AVGPOST=0.9987;RSQ=0.9908;ERATE=0.0004;THETA=0.0005;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 62459371 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0640;AVGPOST=0.9999;RSQ=0.9994;ERATE=0.0003;THETA=0.0003;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 62459420 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62459477 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1244;AVGPOST=0.9998;RSQ=0.9993;ERATE=0.0003;THETA=0.0003;AC=272;AN=2184 GT:DS:GL:BD 0.12454212 0 1 62459504 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0238;AVGPOST=0.9994;RSQ=0.9886;ERATE=0.0003;THETA=0.0003;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 62459604 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=0.9994;RSQ=0.9504;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62459723 . T TA 861 PASS INDEL;BAVGPOST=0.992;BRSQ=0.742;LDAF=0.0142;AVGPOST=0.9884;RSQ=0.6792;ERATE=0.0018;THETA=0.0002;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 62459769 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6606;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62459807 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0226;AVGPOST=0.9993;RSQ=0.9858;ERATE=0.0003;THETA=0.0005;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 62459874 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6330;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62459926 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9543;ERATE=0.0005;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62459970 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1152;AVGPOST=0.9981;RSQ=0.9942;ERATE=0.0003;THETA=0.0006;AC=250;AN=2184 GT:DS:GL:BD 0.11446887 0 1 62460034 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1248;AVGPOST=0.9986;RSQ=0.9959;ERATE=0.0004;THETA=0.0002;AC=274;AN=2184 GT:DS:GL:BD 0.12545788 0 1 62460079 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6094;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62460114 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1237;AVGPOST=0.9989;RSQ=0.9958;ERATE=0.0004;THETA=0.0006;AC=269;AN=2184 GT:DS:GL:BD 0.12316850 0 1 62460169 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62460176 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0013;AVGPOST=0.9981;RSQ=0.5572;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62460287 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0267;AVGPOST=0.9966;RSQ=0.9577;ERATE=0.0004;THETA=0.0006;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 62460291 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.978;LDAF=0.0816;AVGPOST=0.9979;RSQ=0.9895;ERATE=0.0006;THETA=0.0002;AC=177;AN=2184 GT:DS:GL:BD 0.08104396 0 1 62460426 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62460471 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0048;AVGPOST=0.9989;RSQ=0.9170;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62460578 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.766;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8580;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62460684 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.6390;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62460725 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7153;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62460764 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1257;AVGPOST=0.9996;RSQ=0.9985;ERATE=0.0003;THETA=0.0005;AC=275;AN=2184 GT:DS:GL:BD 0.12591575 0 1 62460772 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62460932 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9294;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62460961 . C CA 15 PASS INDEL;BAVGPOST=0.999;BRSQ=0.593;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4506;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62460998 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.976;LDAF=0.0809;AVGPOST=0.9980;RSQ=0.9899;ERATE=0.0003;THETA=0.0010;AC=176;AN=2184 GT:DS:GL:BD 0.08058608 0 1 62461302 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0052;AVGPOST=0.9995;RSQ=0.9597;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62461408 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7298;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62461527 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0235;AVGPOST=0.9979;RSQ=0.9660;ERATE=0.0004;THETA=0.0004;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 62461566 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0066;AVGPOST=0.9993;RSQ=0.9623;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62461595 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.6472;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62461637 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.679;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6082;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62461687 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0087;AVGPOST=1.0000;RSQ=0.9975;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62461770 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0026;AVGPOST=0.9998;RSQ=0.9620;ERATE=0.0003;THETA=0.0017;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62461846 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6370;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62461885 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1214;AVGPOST=0.9985;RSQ=0.9947;ERATE=0.0003;THETA=0.0004;AC=264;AN=2184 GT:DS:GL:BD 0.12087912 0 1 62461934 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0065;AVGPOST=0.9985;RSQ=0.8884;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62461936 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7151;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62461993 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3113;AVGPOST=0.9978;RSQ=0.9960;ERATE=0.0007;THETA=0.0005;AC=681;AN=2184 GT:DS:GL:BD 0.31181318 0 1 62462099 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3116;AVGPOST=0.9989;RSQ=0.9979;ERATE=0.0003;THETA=0.0005;AC=681;AN=2184 GT:DS:GL:BD 0.31181318 0 1 62462147 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7129;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62462153 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7860;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62462161 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3117;AVGPOST=0.9991;RSQ=0.9984;ERATE=0.0003;THETA=0.0006;AC=681;AN=2184 GT:DS:GL:BD 0.31181318 0 1 62462202 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1222;AVGPOST=0.9984;RSQ=0.9941;ERATE=0.0004;THETA=0.0003;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 62462213 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.859;LDAF=0.0150;AVGPOST=0.9964;RSQ=0.9026;ERATE=0.0005;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62462320 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7359;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62462325 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.845;LDAF=0.0134;AVGPOST=0.9974;RSQ=0.9182;ERATE=0.0004;THETA=0.0016;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62462356 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.6269;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62462372 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0007;AVGPOST=0.9992;RSQ=0.4944;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62462414 rs67106213 T TTTTC 5486 PASS INDEL;BAVGPOST=0.964;BRSQ=0.882;LDAF=0.1744;AVGPOST=0.9555;RSQ=0.8848;ERATE=0.0037;THETA=0.0003;AC=378;AN=2184 GT:DS:GL:BD 0.17307693 0 1 62462416 . T TTC 6354 PASS INDEL;BAVGPOST=0.966;BRSQ=0.889;LDAF=0.1707;AVGPOST=0.9776;RSQ=0.9412;ERATE=0.0007;THETA=0.0003;AC=380;AN=2184 GT:DS:GL:BD 0.17399268 0 1 62462417 . T TC 6831 PASS INDEL;BAVGPOST=0.966;BRSQ=0.885;LDAF=0.1698;AVGPOST=0.9785;RSQ=0.9433;ERATE=0.0008;THETA=0.0007;AC=375;AN=2184 GT:DS:GL:BD 0.17170329 0 1 62462442 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0689;AVGPOST=0.9940;RSQ=0.9721;ERATE=0.0005;THETA=0.0002;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 62462518 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7702;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62462576 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1228;AVGPOST=0.9981;RSQ=0.9922;ERATE=0.0005;THETA=0.0008;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 62462602 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.976;LDAF=0.0341;AVGPOST=0.9985;RSQ=0.9820;ERATE=0.0003;THETA=0.0005;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 62462603 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.765;LDAF=0.0053;AVGPOST=0.9974;RSQ=0.8050;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62462655 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.705;LDAF=0.0014;AVGPOST=0.9979;RSQ=0.3768;ERATE=0.0007;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62462661 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.850;LDAF=0.0144;AVGPOST=0.9987;RSQ=0.9574;ERATE=0.0004;THETA=0.0007;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62462666 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.669;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5882;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62462739 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1876;AVGPOST=0.9984;RSQ=0.9956;ERATE=0.0005;THETA=0.0010;AC=409;AN=2184 GT:DS:GL:BD 0.18727106 0 1 62462762 . G GT 2680 PASS INDEL;BAVGPOST=0.987;BRSQ=0.957;LDAF=0.1843;AVGPOST=0.9949;RSQ=0.9874;ERATE=0.0006;THETA=0.0009;AC=403;AN=2184 GT:DS:GL:BD 0.18452381 0 1 62462764 rs33999542 T TC 22750 PASS INDEL;BAVGPOST=0.989;BRSQ=0.965;LDAF=0.1876;AVGPOST=0.9954;RSQ=0.9894;ERATE=0.0006;THETA=0.0007;AC=408;AN=2184 GT:DS:GL:BD 0.18681319 0 1 62462780 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.986;LDAF=0.1222;AVGPOST=0.9987;RSQ=0.9954;ERATE=0.0004;THETA=0.0006;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 62462918 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.7375;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62462930 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0139;AVGPOST=0.9996;RSQ=0.9879;ERATE=0.0003;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62462987 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0042;AVGPOST=0.9991;RSQ=0.9112;ERATE=0.0006;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62463045 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1875;AVGPOST=0.9994;RSQ=0.9981;ERATE=0.0004;THETA=0.0006;AC=409;AN=2184 GT:DS:GL:BD 0.18727106 0 1 62463192 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0656;AVGPOST=0.9995;RSQ=0.9971;ERATE=0.0003;THETA=0.0004;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 62463249 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1853;AVGPOST=0.9984;RSQ=0.9959;ERATE=0.0004;THETA=0.0011;AC=405;AN=2184 GT:DS:GL:BD 0.18543956 0 1 62463274 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.1232;AVGPOST=0.9987;RSQ=0.9954;ERATE=0.0004;THETA=0.0006;AC=268;AN=2184 GT:DS:GL:BD 0.12271062 0 1 62463289 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9460;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62463365 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62463374 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.983;LDAF=0.1218;AVGPOST=0.9992;RSQ=0.9967;ERATE=0.0003;THETA=0.0003;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 62463392 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1220;AVGPOST=0.9975;RSQ=0.9904;ERATE=0.0004;THETA=0.0011;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 62463470 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5711;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62463493 rs35418449 T TTTTG 4466 PASS INDEL;BAVGPOST=0.915;BRSQ=0.561;LDAF=0.1571;AVGPOST=0.8548;RSQ=0.5527;ERATE=0.0200;THETA=0.0006;AC=250;AN=2184 GT:DS:GL:BD 0.11446887 0 1 62463656 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.869;BRSQ=0.676;LDAF=0.2680;AVGPOST=0.8866;RSQ=0.7708;ERATE=0.0124;THETA=0.0020;AC=573;AN=2184 GT:DS:GL:BD 0.26236263 0 1 62463662 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.900;BRSQ=0.558;LDAF=0.8255;AVGPOST=0.8332;RSQ=0.5636;ERATE=0.0136;THETA=0.0004;AC=1905;AN=2184 GT:DS:GL:BD 0.87225276 1 1 62463669 . TA T 436 PASS INDEL;BAVGPOST=0.793;BRSQ=0.193;LDAF=0.2267;AVGPOST=0.7107;RSQ=0.3274;ERATE=0.0306;THETA=0.0004;AC=279;AN=2184 GT:DS:GL:BD 0.12774725 0 1 62463671 . A ATATAT 1975 PASS INDEL;BAVGPOST=0.861;BRSQ=0.453;LDAF=0.1816;AVGPOST=0.8536;RSQ=0.6093;ERATE=0.0085;THETA=0.0003;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 62463687 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.181;LDAF=0.0475;AVGPOST=0.9473;RSQ=0.5308;ERATE=0.0024;THETA=0.0005;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 62463689 . T TTA 965 PASS INDEL;BAVGPOST=0.893;BRSQ=0.596;LDAF=0.1705;AVGPOST=0.9382;RSQ=0.8286;ERATE=0.0042;THETA=0.0006;AC=352;AN=2184 GT:DS:GL:BD 0.16117217 0 1 62463703 rs35198834 T TTA 1110 PASS INDEL;BAVGPOST=0.892;BRSQ=0.589;LDAF=0.1365;AVGPOST=0.9452;RSQ=0.8364;ERATE=0.0013;THETA=0.0022;AC=278;AN=2184 GT:DS:GL:BD 0.12728938 0 1 62463872 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0147;AVGPOST=0.9977;RSQ=0.9315;ERATE=0.0006;THETA=0.0002;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 62463889 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0370;AVGPOST=0.9978;RSQ=0.9765;ERATE=0.0006;THETA=0.0003;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 62463900 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.966;LDAF=0.3154;AVGPOST=0.9937;RSQ=0.9883;ERATE=0.0006;THETA=0.0004;AC=692;AN=2184 GT:DS:GL:BD 0.31684983 0 1 62463918 . AT A 1741 PASS INDEL;BAVGPOST=0.966;BRSQ=0.868;LDAF=0.1271;AVGPOST=0.9843;RSQ=0.9511;ERATE=0.0014;THETA=0.0032;AC=276;AN=2184 GT:DS:GL:BD 0.12637363 0 1 62464028 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1589;AVGPOST=0.9967;RSQ=0.9892;ERATE=0.0008;THETA=0.0005;AC=345;AN=2184 GT:DS:GL:BD 0.15796703 0 1 62464063 . TTTTTA T 2620 PASS INDEL;BAVGPOST=0.995;BRSQ=0.884;LDAF=0.0270;AVGPOST=0.9954;RSQ=0.9347;ERATE=0.0004;THETA=0.0012;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 62464103 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1581;AVGPOST=0.9983;RSQ=0.9944;ERATE=0.0005;THETA=0.0006;AC=345;AN=2184 GT:DS:GL:BD 0.15796703 0 1 62464134 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1565;AVGPOST=0.9977;RSQ=0.9928;ERATE=0.0007;THETA=0.0005;AC=341;AN=2184 GT:DS:GL:BD 0.15613553 0 1 62464218 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.6781;ERATE=0.0008;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62464263 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3175;AVGPOST=0.9981;RSQ=0.9961;ERATE=0.0004;THETA=0.0003;AC=694;AN=2184 GT:DS:GL:BD 0.31776556 0 1 62464281 . AAAG A 13781 PASS INDEL;BAVGPOST=0.981;BRSQ=0.924;LDAF=0.1207;AVGPOST=0.9946;RSQ=0.9832;ERATE=0.0007;THETA=0.0005;AC=264;AN=2184 GT:DS:GL:BD 0.12087912 0 1 62464297 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5320;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62464308 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62464329 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62464383 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1581;AVGPOST=0.9978;RSQ=0.9928;ERATE=0.0006;THETA=0.0004;AC=344;AN=2184 GT:DS:GL:BD 0.15750916 0 1 62464453 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3390;AVGPOST=0.9990;RSQ=0.9981;ERATE=0.0005;THETA=0.0003;AC=741;AN=2184 GT:DS:GL:BD 0.33928570 0 1 62464546 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0265;AVGPOST=0.9983;RSQ=0.9759;ERATE=0.0003;THETA=0.0004;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 62464591 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7085;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62464610 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6962;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62464637 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6952;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62464786 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.3392;AVGPOST=0.9990;RSQ=0.9982;ERATE=0.0003;THETA=0.0006;AC=741;AN=2184 GT:DS:GL:BD 0.33928570 0 1 62464887 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6131;AVGPOST=0.9960;RSQ=0.9937;ERATE=0.0004;THETA=0.0007;AC=1341;AN=2184 GT:DS:GL:BD 0.61401099 1 1 62464943 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0294;AVGPOST=0.9997;RSQ=0.9953;ERATE=0.0003;THETA=0.0003;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 62464966 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.984;LDAF=0.1577;AVGPOST=0.9984;RSQ=0.9950;ERATE=0.0004;THETA=0.0004;AC=345;AN=2184 GT:DS:GL:BD 0.15796703 0 1 62464975 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.982;LDAF=0.1580;AVGPOST=0.9989;RSQ=0.9963;ERATE=0.0004;THETA=0.0002;AC=345;AN=2184 GT:DS:GL:BD 0.15796703 0 1 62465057 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8057;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62465110 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.979;LDAF=0.3374;AVGPOST=0.9924;RSQ=0.9862;ERATE=0.0013;THETA=0.0003;AC=739;AN=2184 GT:DS:GL:BD 0.33836997 0 1 62465232 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.934;LDAF=0.0262;AVGPOST=0.9994;RSQ=0.9913;ERATE=0.0003;THETA=0.0007;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 62465264 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.3162;AVGPOST=0.9957;RSQ=0.9915;ERATE=0.0008;THETA=0.0002;AC=694;AN=2184 GT:DS:GL:BD 0.31776556 0 1 62465300 . G GT 1656 PASS INDEL;BAVGPOST=0.991;BRSQ=0.750;LDAF=0.0183;AVGPOST=0.9979;RSQ=0.9539;ERATE=0.0003;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 62465309 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0347;AVGPOST=0.9981;RSQ=0.9796;ERATE=0.0004;THETA=0.0006;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 62465407 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7173;ERATE=0.0005;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62465430 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0811;AVGPOST=0.9987;RSQ=0.9932;ERATE=0.0003;THETA=0.0008;AC=177;AN=2184 GT:DS:GL:BD 0.08104396 0 1 62465465 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0256;AVGPOST=0.9980;RSQ=0.9732;ERATE=0.0003;THETA=0.0004;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 62465513 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.983;LDAF=0.1221;AVGPOST=0.9989;RSQ=0.9953;ERATE=0.0004;THETA=0.0006;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 62465515 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.987;LDAF=0.1582;AVGPOST=0.9989;RSQ=0.9961;ERATE=0.0003;THETA=0.0006;AC=345;AN=2184 GT:DS:GL:BD 0.15796703 0 1 62465517 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.901;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.8862;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62465529 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5768;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62465535 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.706;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6409;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62465556 . GT G 245 PASS INDEL;BAVGPOST=0.996;BRSQ=0.699;LDAF=0.0064;AVGPOST=0.9968;RSQ=0.8179;ERATE=0.0004;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62465584 . TTG T 6 PASS INDEL;BAVGPOST=0.999;BRSQ=0.658;LDAF=0.0033;AVGPOST=0.9953;RSQ=0.4560;ERATE=0.0008;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62465721 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.917;LDAF=0.0338;AVGPOST=0.9904;RSQ=0.8926;ERATE=0.0011;THETA=0.0004;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 62465808 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0250;AVGPOST=0.9944;RSQ=0.9122;ERATE=0.0005;THETA=0.0003;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 62465823 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0811;AVGPOST=0.9985;RSQ=0.9920;ERATE=0.0003;THETA=0.0004;AC=177;AN=2184 GT:DS:GL:BD 0.08104396 0 1 62465901 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.884;LDAF=0.0373;AVGPOST=0.9972;RSQ=0.9688;ERATE=0.0004;THETA=0.0004;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 62465908 rs71050192 T TGTGCA 8341 PASS INDEL;BAVGPOST=0.949;BRSQ=0.719;LDAF=0.1019;AVGPOST=0.9701;RSQ=0.8744;ERATE=0.0012;THETA=0.0004;AC=218;AN=2184 GT:DS:GL:BD 0.09981685 0 1 62465912 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.873;LDAF=0.1279;AVGPOST=0.9840;RSQ=0.9493;ERATE=0.0008;THETA=0.0013;AC=288;AN=2184 GT:DS:GL:BD 0.13186814 0 1 62465920 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.980;LDAF=0.1775;AVGPOST=0.9905;RSQ=0.9760;ERATE=0.0006;THETA=0.0007;AC=388;AN=2184 GT:DS:GL:BD 0.17765568 0 1 62466115 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.943;BRSQ=0.759;LDAF=0.1209;AVGPOST=0.9568;RSQ=0.8674;ERATE=0.0011;THETA=0.0007;AC=268;AN=2184 GT:DS:GL:BD 0.12271062 0 1 62466116 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.891;BRSQ=0.759;LDAF=0.2763;AVGPOST=0.9198;RSQ=0.8584;ERATE=0.0048;THETA=0.0010;AC=622;AN=2184 GT:DS:GL:BD 0.28479853 0 1 62466236 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.862;LDAF=0.1080;AVGPOST=0.9784;RSQ=0.9187;ERATE=0.0009;THETA=0.0004;AC=239;AN=2184 GT:DS:GL:BD 0.10943224 0 1 62466240 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.756;LDAF=0.0048;AVGPOST=0.9966;RSQ=0.7504;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62466421 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0160;AVGPOST=0.9959;RSQ=0.8884;ERATE=0.0007;THETA=0.0023;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62466455 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.919;BRSQ=0.697;LDAF=0.1252;AVGPOST=0.9255;RSQ=0.7674;ERATE=0.0062;THETA=0.0015;AC=249;AN=2184 GT:DS:GL:BD 0.11401099 0 1 62466546 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7610;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62466574 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4575;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62466646 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.956;BRSQ=0.817;LDAF=0.1400;AVGPOST=0.9830;RSQ=0.9454;ERATE=0.0006;THETA=0.0004;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 62466648 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.957;BRSQ=0.822;LDAF=0.1410;AVGPOST=0.9811;RSQ=0.9410;ERATE=0.0006;THETA=0.0024;AC=318;AN=2184 GT:DS:GL:BD 0.14560440 0 1 62467259 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.744;LDAF=0.0066;AVGPOST=0.9974;RSQ=0.8600;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62467312 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.722;LDAF=0.0102;AVGPOST=0.9944;RSQ=0.8153;ERATE=0.0006;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62467530 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.631;LDAF=0.0078;AVGPOST=0.9922;RSQ=0.6118;ERATE=0.0010;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62467734 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6710;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62467817 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1588;AVGPOST=0.9992;RSQ=0.9974;ERATE=0.0005;THETA=0.0006;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 62467927 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5874;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62468025 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7393;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62468060 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.914;LDAF=0.0235;AVGPOST=0.9973;RSQ=0.9549;ERATE=0.0003;THETA=0.0009;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 62468090 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1880;AVGPOST=0.9994;RSQ=0.9982;ERATE=0.0004;THETA=0.0008;AC=410;AN=2184 GT:DS:GL:BD 0.18772894 0 1 62468149 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.487;LDAF=0.0021;AVGPOST=0.9980;RSQ=0.6355;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62468306 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.974;LDAF=0.1623;AVGPOST=0.9945;RSQ=0.9828;ERATE=0.0011;THETA=0.0005;AC=353;AN=2184 GT:DS:GL:BD 0.16163003 0 1 62468405 . A AG 7252 PASS INDEL;BAVGPOST=0.982;BRSQ=0.965;LDAF=0.4226;AVGPOST=0.9741;RSQ=0.9591;ERATE=0.0031;THETA=0.0004;AC=927;AN=2184 GT:DS:GL:BD 0.42445055 0 1 62468414 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0370;AVGPOST=0.9977;RSQ=0.9773;ERATE=0.0004;THETA=0.0003;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 62468494 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1583;AVGPOST=0.9987;RSQ=0.9965;ERATE=0.0003;THETA=0.0003;AC=345;AN=2184 GT:DS:GL:BD 0.15796703 0 1 62468500 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.934;LDAF=0.0138;AVGPOST=0.9995;RSQ=0.9808;ERATE=0.0003;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62468521 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62468556 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0365;AVGPOST=0.9997;RSQ=0.9967;ERATE=0.0003;THETA=0.0003;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 62468634 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0068;AVGPOST=0.9979;RSQ=0.8673;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62468653 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1220;AVGPOST=0.9992;RSQ=0.9968;ERATE=0.0003;THETA=0.0008;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 62468676 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6079;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62468707 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5873;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62468776 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62468837 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0022;AVGPOST=0.9986;RSQ=0.7839;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62468855 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1586;AVGPOST=0.9995;RSQ=0.9982;ERATE=0.0004;THETA=0.0004;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 62468922 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6550;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62468966 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62469017 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1586;AVGPOST=0.9995;RSQ=0.9983;ERATE=0.0003;THETA=0.0003;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 62469233 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.721;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.5810;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62469295 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1222;AVGPOST=0.9996;RSQ=0.9984;ERATE=0.0003;THETA=0.0006;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 62469338 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1587;AVGPOST=0.9992;RSQ=0.9974;ERATE=0.0003;THETA=0.0004;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 62469398 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1587;AVGPOST=0.9994;RSQ=0.9980;ERATE=0.0003;THETA=0.0005;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 62469455 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1298;AVGPOST=0.9995;RSQ=0.9980;ERATE=0.0003;THETA=0.0004;AC=284;AN=2184 GT:DS:GL:BD 0.13003664 0 1 62469460 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6627;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62469464 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0046;AVGPOST=0.9990;RSQ=0.9129;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62469512 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.733;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8216;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62469545 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1220;AVGPOST=0.9998;RSQ=0.9990;ERATE=0.0003;THETA=0.0002;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 62469624 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1221;AVGPOST=0.9995;RSQ=0.9979;ERATE=0.0004;THETA=0.0006;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 62469643 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0375;AVGPOST=0.9992;RSQ=0.9912;ERATE=0.0003;THETA=0.0005;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 62469742 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1222;AVGPOST=0.9996;RSQ=0.9986;ERATE=0.0003;THETA=0.0004;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 62469765 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1222;AVGPOST=0.9995;RSQ=0.9979;ERATE=0.0003;THETA=0.0007;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 62469804 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62469875 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.987;LDAF=0.3337;AVGPOST=0.9949;RSQ=0.9911;ERATE=0.0005;THETA=0.0007;AC=730;AN=2184 GT:DS:GL:BD 0.33424908 0 1 62469876 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.973;LDAF=0.1199;AVGPOST=0.9903;RSQ=0.9661;ERATE=0.0027;THETA=0.0011;AC=257;AN=2184 GT:DS:GL:BD 0.11767399 0 1 62470007 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0014;AVGPOST=0.9993;RSQ=0.7930;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62470046 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0059;AVGPOST=0.9995;RSQ=0.9588;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62470090 . C CT 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5389;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62470103 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62470138 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0061;AVGPOST=0.9989;RSQ=0.9245;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62470233 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.976;LDAF=0.1152;AVGPOST=0.9946;RSQ=0.9802;ERATE=0.0006;THETA=0.0007;AC=250;AN=2184 GT:DS:GL:BD 0.11446887 0 1 62470234 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.976;LDAF=0.1148;AVGPOST=0.9955;RSQ=0.9838;ERATE=0.0003;THETA=0.0002;AC=250;AN=2184 GT:DS:GL:BD 0.11446887 0 1 62470303 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0296;AVGPOST=0.9997;RSQ=0.9962;ERATE=0.0003;THETA=0.0009;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 62470313 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1976;AVGPOST=0.9990;RSQ=0.9975;ERATE=0.0003;THETA=0.0006;AC=432;AN=2184 GT:DS:GL:BD 0.19780220 0 1 62470367 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1220;AVGPOST=0.9997;RSQ=0.9987;ERATE=0.0003;THETA=0.0008;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 62470405 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1603;AVGPOST=0.9992;RSQ=0.9974;ERATE=0.0004;THETA=0.0007;AC=349;AN=2184 GT:DS:GL:BD 0.15979853 0 1 62470442 . CAA C 25 PASS INDEL;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.7905;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62470482 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6131;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62470545 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0278;AVGPOST=0.9957;RSQ=0.9394;ERATE=0.0005;THETA=0.0005;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 62470633 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62470635 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1222;AVGPOST=0.9994;RSQ=0.9974;ERATE=0.0003;THETA=0.0004;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 62470648 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0051;AVGPOST=0.9978;RSQ=0.8539;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62470674 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1605;AVGPOST=0.9992;RSQ=0.9974;ERATE=0.0003;THETA=0.0009;AC=350;AN=2184 GT:DS:GL:BD 0.16025642 0 1 62470708 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62470741 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1221;AVGPOST=0.9992;RSQ=0.9968;ERATE=0.0003;THETA=0.0008;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 62470744 rs111297460 G GT 2762 PASS INDEL;BAVGPOST=0.997;BRSQ=0.981;LDAF=0.0400;AVGPOST=0.9968;RSQ=0.9710;ERATE=0.0006;THETA=0.0006;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 62470788 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.809;LDAF=0.0105;AVGPOST=0.9924;RSQ=0.7779;ERATE=0.0004;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62470802 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.1245;AVGPOST=0.9962;RSQ=0.9854;ERATE=0.0008;THETA=0.0004;AC=270;AN=2184 GT:DS:GL:BD 0.12362637 0 1 62470829 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.852;LDAF=0.0058;AVGPOST=0.9963;RSQ=0.7618;ERATE=0.0006;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62470852 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0383;AVGPOST=0.9992;RSQ=0.9911;ERATE=0.0003;THETA=0.0003;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 62470869 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0023;AVGPOST=0.9983;RSQ=0.7507;ERATE=0.0007;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62470930 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0024;AVGPOST=0.9975;RSQ=0.5933;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62471012 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0024;AVGPOST=0.9993;RSQ=0.8763;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62471017 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9124;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62471087 . TG T 14152 PASS INDEL;BAVGPOST=0.973;BRSQ=0.918;LDAF=0.1810;AVGPOST=0.9879;RSQ=0.9666;ERATE=0.0014;THETA=0.0006;AC=391;AN=2184 GT:DS:GL:BD 0.17902930 0 1 62471093 . T TG 1058 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0380;AVGPOST=0.9991;RSQ=0.9896;ERATE=0.0005;THETA=0.0004;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 62471110 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0307;AVGPOST=0.9996;RSQ=0.9942;ERATE=0.0003;THETA=0.0008;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 62471118 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.539;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4284;ERATE=0.0006;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62471236 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0095;AVGPOST=0.9977;RSQ=0.9096;ERATE=0.0004;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62471244 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1231;AVGPOST=0.9949;RSQ=0.9854;ERATE=0.0004;THETA=0.0010;AC=269;AN=2184 GT:DS:GL:BD 0.12316850 0 1 62471403 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0307;AVGPOST=0.9983;RSQ=0.9801;ERATE=0.0004;THETA=0.0003;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 62471474 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0251;AVGPOST=0.9984;RSQ=0.9763;ERATE=0.0003;THETA=0.0003;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 62471634 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3435;AVGPOST=0.9951;RSQ=0.9912;ERATE=0.0007;THETA=0.0006;AC=750;AN=2184 GT:DS:GL:BD 0.34340659 0 1 62471651 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1221;AVGPOST=0.9990;RSQ=0.9958;ERATE=0.0004;THETA=0.0005;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 62471679 . T TC 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0019;AVGPOST=0.9978;RSQ=0.5654;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62471689 . AGT A 41 PASS INDEL;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0043;AVGPOST=0.9962;RSQ=0.6297;ERATE=0.0007;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62471704 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.500;LDAF=0.0020;AVGPOST=0.9985;RSQ=0.6638;ERATE=0.0006;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62471711 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.975;LDAF=0.1225;AVGPOST=0.9979;RSQ=0.9927;ERATE=0.0004;THETA=0.0005;AC=267;AN=2184 GT:DS:GL:BD 0.12225275 0 1 62471816 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1609;AVGPOST=0.9954;RSQ=0.9869;ERATE=0.0008;THETA=0.0007;AC=350;AN=2184 GT:DS:GL:BD 0.16025642 0 1 62471818 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0038;AVGPOST=0.9961;RSQ=0.6189;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62471843 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.969;LDAF=0.0823;AVGPOST=0.9968;RSQ=0.9821;ERATE=0.0006;THETA=0.0004;AC=179;AN=2184 GT:DS:GL:BD 0.08195971 0 1 62471934 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0359;AVGPOST=0.9970;RSQ=0.9667;ERATE=0.0004;THETA=0.0003;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 62471939 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0023;AVGPOST=0.9967;RSQ=0.4336;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62472142 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1288;AVGPOST=0.9983;RSQ=0.9941;ERATE=0.0004;THETA=0.0010;AC=282;AN=2184 GT:DS:GL:BD 0.12912089 0 1 62472227 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6745;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62472238 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0017;AVGPOST=0.9977;RSQ=0.4990;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62472350 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9976;RSQ=0.8056;ERATE=0.0008;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62472417 rs35097389 CA C 17555 PASS INDEL;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.1723;AVGPOST=0.9948;RSQ=0.9856;ERATE=0.0005;THETA=0.0007;AC=375;AN=2184 GT:DS:GL:BD 0.17170329 0 1 62472421 . AC A 26177 PASS INDEL;BAVGPOST=0.995;BRSQ=0.356;LDAF=0.9958;AVGPOST=0.9940;RSQ=0.4092;ERATE=0.0011;THETA=0.0004;AC=2179;AN=2184 GT:DS:GL:BD 0.99771065 1 1 62472424 . CA C 353 PASS INDEL;BAVGPOST=0.996;BRSQ=0.803;LDAF=0.0137;AVGPOST=0.9902;RSQ=0.7204;ERATE=0.0037;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62472507 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1356;AVGPOST=0.9995;RSQ=0.9979;ERATE=0.0003;THETA=0.0005;AC=296;AN=2184 GT:DS:GL:BD 0.13553114 0 1 62472521 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0053;AVGPOST=0.9988;RSQ=0.9136;ERATE=0.0004;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62472599 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62472630 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.883;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9889;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62472718 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0027;AVGPOST=0.9995;RSQ=0.8623;ERATE=0.0005;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62472911 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.6246;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62473119 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0070;AVGPOST=0.9988;RSQ=0.9291;ERATE=0.0004;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62473152 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9982;RSQ=0.8042;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62473327 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0041;AVGPOST=0.9989;RSQ=0.8838;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62473351 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0324;AVGPOST=0.9993;RSQ=0.9916;ERATE=0.0003;THETA=0.0005;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 62473530 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0030;AVGPOST=0.9985;RSQ=0.7848;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62473611 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7642;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62473618 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2035;AVGPOST=0.9996;RSQ=0.9989;ERATE=0.0003;THETA=0.0004;AC=444;AN=2184 GT:DS:GL:BD 0.20329671 0 1 62473649 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0088;AVGPOST=0.9997;RSQ=0.9824;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62473822 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7541;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62473968 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.8026;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62473982 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0676;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 62474038 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.6049;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62474083 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8134;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62474151 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0677;AVGPOST=0.9996;RSQ=0.9977;ERATE=0.0003;THETA=0.0003;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 62474239 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.967;LDAF=0.0298;AVGPOST=0.9995;RSQ=0.9927;ERATE=0.0003;THETA=0.0006;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 62474258 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.5718;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62474265 rs34192792 TA T 11840 PASS INDEL;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.2066;AVGPOST=0.9910;RSQ=0.9799;ERATE=0.0014;THETA=0.0002;AC=449;AN=2184 GT:DS:GL:BD 0.20558608 0 1 62474328 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0675;AVGPOST=0.9984;RSQ=0.9907;ERATE=0.0004;THETA=0.0003;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 62474399 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7143;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62474542 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5469;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62474650 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.983;LDAF=0.1219;AVGPOST=0.9993;RSQ=0.9972;ERATE=0.0003;THETA=0.0004;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 62474717 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0383;AVGPOST=0.9993;RSQ=0.9915;ERATE=0.0003;THETA=0.0006;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 62474737 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1738;AVGPOST=0.9991;RSQ=0.9971;ERATE=0.0003;THETA=0.0004;AC=379;AN=2184 GT:DS:GL:BD 0.17353480 0 1 62474787 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.5470;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62474909 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.951;LDAF=0.0779;AVGPOST=0.9967;RSQ=0.9823;ERATE=0.0004;THETA=0.0004;AC=170;AN=2184 GT:DS:GL:BD 0.07783883 0 1 62474991 . CAT C 205 PASS INDEL;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62475012 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.614;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7285;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62475052 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5902;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62475063 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1299;AVGPOST=0.9993;RSQ=0.9975;ERATE=0.0003;THETA=0.0004;AC=284;AN=2184 GT:DS:GL:BD 0.13003664 0 1 62475227 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0358;AVGPOST=0.9997;RSQ=0.9961;ERATE=0.0004;THETA=0.0006;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 62475241 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0675;AVGPOST=0.9996;RSQ=0.9977;ERATE=0.0003;THETA=0.0011;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 62475261 rs35848861 AT A 15432 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1221;AVGPOST=0.9994;RSQ=0.9975;ERATE=0.0004;THETA=0.0006;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 62475310 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62475337 . CA C 1229 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0088;AVGPOST=0.9993;RSQ=0.9642;ERATE=0.0004;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62475338 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.862;LDAF=0.0080;AVGPOST=0.9986;RSQ=0.9363;ERATE=0.0004;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62475446 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0091;AVGPOST=0.9986;RSQ=0.9345;ERATE=0.0003;THETA=0.0010;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62475454 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4514;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62475499 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.1370;AVGPOST=0.9965;RSQ=0.9874;ERATE=0.0007;THETA=0.0009;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 62475612 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.966;LDAF=0.3303;AVGPOST=0.9947;RSQ=0.9896;ERATE=0.0009;THETA=0.0013;AC=725;AN=2184 GT:DS:GL:BD 0.33195969 0 1 62475682 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.598;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8538;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62475765 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.918;LDAF=0.0790;AVGPOST=0.9947;RSQ=0.9735;ERATE=0.0009;THETA=0.0019;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 62475897 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1353;AVGPOST=0.9985;RSQ=0.9946;ERATE=0.0004;THETA=0.0005;AC=296;AN=2184 GT:DS:GL:BD 0.13553114 0 1 62475973 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1598;AVGPOST=0.9988;RSQ=0.9962;ERATE=0.0004;THETA=0.0004;AC=349;AN=2184 GT:DS:GL:BD 0.15979853 0 1 62475982 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0118;AVGPOST=0.9950;RSQ=0.8384;ERATE=0.0007;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62476014 . TG T 683 PASS INDEL;BAVGPOST=0.880;BRSQ=0.379;LDAF=0.1664;AVGPOST=0.8011;RSQ=0.4110;ERATE=0.0470;THETA=0.0004;AC=208;AN=2184 GT:DS:GL:BD 0.09523810 0 1 62476063 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.681;LDAF=0.0019;AVGPOST=0.9983;RSQ=0.5917;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62476473 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0088;AVGPOST=0.9995;RSQ=0.9703;ERATE=0.0004;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62476490 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1364;AVGPOST=0.9976;RSQ=0.9926;ERATE=0.0004;THETA=0.0006;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 62476577 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5980;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62476582 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0332;AVGPOST=0.9991;RSQ=0.9895;ERATE=0.0003;THETA=0.0003;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 62476625 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1355;AVGPOST=0.9989;RSQ=0.9965;ERATE=0.0004;THETA=0.0006;AC=296;AN=2184 GT:DS:GL:BD 0.13553114 0 1 62476762 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0087;AVGPOST=0.9998;RSQ=0.9881;ERATE=0.0003;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62476804 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1356;AVGPOST=0.9991;RSQ=0.9974;ERATE=0.0003;THETA=0.0005;AC=296;AN=2184 GT:DS:GL:BD 0.13553114 0 1 62476832 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0051;AVGPOST=0.9988;RSQ=0.9059;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62476882 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62476925 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6678;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62476947 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1361;AVGPOST=0.9981;RSQ=0.9943;ERATE=0.0003;THETA=0.0008;AC=297;AN=2184 GT:DS:GL:BD 0.13598901 0 1 62476982 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.918;LDAF=0.0176;AVGPOST=0.9957;RSQ=0.9149;ERATE=0.0003;THETA=0.0003;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 62476993 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9927;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62477075 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3327;AVGPOST=0.9980;RSQ=0.9964;ERATE=0.0007;THETA=0.0004;AC=728;AN=2184 GT:DS:GL:BD 0.33333334 0 1 62477081 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62477092 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0075;AVGPOST=0.9995;RSQ=0.9683;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62477239 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9385;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62477246 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0380;AVGPOST=0.9999;RSQ=0.9989;ERATE=0.0003;THETA=0.0008;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 62477497 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1366;AVGPOST=0.9980;RSQ=0.9947;ERATE=0.0003;THETA=0.0006;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 62477526 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0131;AVGPOST=0.9993;RSQ=0.9735;ERATE=0.0004;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62477530 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62477568 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7762;ERATE=0.0004;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62477642 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0387;AVGPOST=0.9989;RSQ=0.9881;ERATE=0.0004;THETA=0.0006;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 62477680 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0002;AVGPOST=0.9997;RSQ=0.0497;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62477731 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0089;AVGPOST=0.9996;RSQ=0.9780;ERATE=0.0003;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62477758 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1355;AVGPOST=0.9991;RSQ=0.9971;ERATE=0.0003;THETA=0.0003;AC=296;AN=2184 GT:DS:GL:BD 0.13553114 0 1 62477867 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0380;AVGPOST=0.9994;RSQ=0.9929;ERATE=0.0003;THETA=0.0012;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 62477918 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1356;AVGPOST=0.9988;RSQ=0.9961;ERATE=0.0004;THETA=0.0011;AC=296;AN=2184 GT:DS:GL:BD 0.13553114 0 1 62477947 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1302;AVGPOST=0.9983;RSQ=0.9940;ERATE=0.0004;THETA=0.0151;AC=284;AN=2184 GT:DS:GL:BD 0.13003664 0 1 62478068 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0139;AVGPOST=0.9996;RSQ=0.9857;ERATE=0.0003;THETA=0.0010;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62478292 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6180;ERATE=0.0003;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62478369 rs10544585 CTT C 12447 PASS INDEL;BAVGPOST=0.997;BRSQ=0.986;LDAF=0.1081;AVGPOST=0.9871;RSQ=0.9548;ERATE=0.0006;THETA=0.0021;AC=229;AN=2184 GT:DS:GL:BD 0.10485348 0 1 62478451 . A AATGTGTT 88 PASS INDEL;BAVGPOST=0.998;BRSQ=0.597;LDAF=0.0019;AVGPOST=0.9972;RSQ=0.3835;ERATE=0.0006;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62478641 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0252;AVGPOST=0.9987;RSQ=0.9791;ERATE=0.0005;THETA=0.0007;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 62478854 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.806;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0046;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62478878 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0318;AVGPOST=0.9982;RSQ=0.9777;ERATE=0.0003;THETA=0.0008;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 62478925 . G GA 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6355;ERATE=0.0003;THETA=0.0075;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62478977 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0119;AVGPOST=0.9980;RSQ=0.9318;ERATE=0.0004;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62478978 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0057;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62478985 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0110;AVGPOST=0.9998;RSQ=0.9899;ERATE=0.0003;THETA=0.0046;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62478988 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0054;AVGPOST=0.9984;RSQ=0.8664;ERATE=0.0003;THETA=0.0034;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62479032 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.708;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7548;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62479117 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9553;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62479159 MERGED_DEL_2_3749 GGAGGATGTTGGCTCCTGCCCTAAGGAGCTCCACTCAGTTCAGTAGGTGTTGCGTGCCTGCGCTGATGGTTACTGCCCAACAAGGACTGACTTTACCATGTTGTGTTGTGGTATAAGTGCAAGAAGAGAAATTTTTTTAAACCTAGTGCCACAAGATTCAAAGACAGGAGGGTAGGATAGGTGATTTAGA G . . SV;BAVGPOST=0.997;BRSQ=0.476;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6169;ERATE=0.0006;THETA=0.0055;CIEND=-64,89;CIPOS=-84,73;END=62480586;HOMLEN=2;HOMSEQ=GA;SOURCE=BreakDancer_62479135_62480563,Ge GT:DS:GL:BD 0.00091575 0 1 62479186 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0080;AVGPOST=0.9995;RSQ=0.9731;ERATE=0.0003;THETA=0.0041;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62479254 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0139;AVGPOST=0.9996;RSQ=0.9864;ERATE=0.0003;THETA=0.0007;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62479304 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0070;AVGPOST=0.9981;RSQ=0.9042;ERATE=0.0004;THETA=0.0010;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62479339 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0138;AVGPOST=0.9998;RSQ=0.9935;ERATE=0.0003;THETA=0.0059;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62479360 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7530;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62479376 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0686;AVGPOST=0.9982;RSQ=0.9897;ERATE=0.0003;THETA=0.0035;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 62479403 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2824;AVGPOST=0.9958;RSQ=0.9921;ERATE=0.0004;THETA=0.0006;AC=617;AN=2184 GT:DS:GL:BD 0.28250915 0 1 62479457 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0203;AVGPOST=0.9994;RSQ=0.9858;ERATE=0.0003;THETA=0.0007;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 62479534 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.944;LDAF=0.0212;AVGPOST=0.9980;RSQ=0.9569;ERATE=0.0006;THETA=0.0033;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 62479599 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5441;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62479627 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4897;ERATE=0.0005;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62479773 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0209;AVGPOST=0.9994;RSQ=0.9851;ERATE=0.0004;THETA=0.0003;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 62479810 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7024;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62479819 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7682;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62479830 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7703;ERATE=0.0008;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62479831 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0160;AVGPOST=0.9995;RSQ=0.9875;ERATE=0.0003;THETA=0.0014;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62479896 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62479917 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0110;AVGPOST=0.9999;RSQ=0.9940;ERATE=0.0003;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62480059 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9989;RSQ=0.8583;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62480085 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4645;ERATE=0.0006;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62480106 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.984;LDAF=0.1225;AVGPOST=0.9974;RSQ=0.9909;ERATE=0.0005;THETA=0.0009;AC=268;AN=2184 GT:DS:GL:BD 0.12271062 0 1 62480181 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62480277 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.730;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.6271;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62480278 . G GCC 81 PASS INDEL;BAVGPOST=1.000;BRSQ=0.754;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4932;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62480295 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0022;AVGPOST=0.9985;RSQ=0.7217;ERATE=0.0004;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62480303 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.562;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4892;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62480326 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0138;AVGPOST=0.9998;RSQ=0.9935;ERATE=0.0003;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62480392 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7467;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62480394 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0144;AVGPOST=0.9993;RSQ=0.9774;ERATE=0.0003;THETA=0.0019;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 62480466 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.7886;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62480507 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0168;AVGPOST=0.9992;RSQ=0.9781;ERATE=0.0003;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62480597 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0061;AVGPOST=0.9995;RSQ=0.9581;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62480693 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.818;LDAF=0.0069;AVGPOST=0.9976;RSQ=0.8482;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62480809 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0022;AVGPOST=0.9976;RSQ=0.5459;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62480817 . C CA 133 PASS INDEL;BAVGPOST=0.997;BRSQ=0.482;LDAF=0.0038;AVGPOST=0.9958;RSQ=0.5084;ERATE=0.0009;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62480931 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0044;AVGPOST=0.9967;RSQ=0.6685;ERATE=0.0007;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62480984 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0034;AVGPOST=0.9987;RSQ=0.8497;ERATE=0.0004;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62481019 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5168;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62481116 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5670;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62481208 . CGT C 356 PASS INDEL;BAVGPOST=0.986;BRSQ=0.677;LDAF=0.0364;AVGPOST=0.9624;RSQ=0.5723;ERATE=0.0119;THETA=0.0003;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 62481209 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0138;AVGPOST=0.9998;RSQ=0.9921;ERATE=0.0003;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62481274 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.714;LDAF=0.0108;AVGPOST=0.9941;RSQ=0.7657;ERATE=0.0004;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62481378 . TTTTTTG T 909 PASS INDEL;BAVGPOST=0.998;BRSQ=0.694;LDAF=0.0033;AVGPOST=0.9979;RSQ=0.7199;ERATE=0.0005;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62481487 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6005;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62481496 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.644;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8094;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62481512 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0257;AVGPOST=0.9967;RSQ=0.9472;ERATE=0.0005;THETA=0.0003;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 62481787 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62481866 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9443;ERATE=0.0003;THETA=0.0031;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62481882 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0029;AVGPOST=0.9991;RSQ=0.8593;ERATE=0.0004;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62481922 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.752;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5360;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62481972 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0041;AVGPOST=0.9980;RSQ=0.8006;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62481985 . C CA 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5715;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62482055 . C CAGTA 14813 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0438;AVGPOST=0.9988;RSQ=0.9880;ERATE=0.0003;THETA=0.0002;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 62482057 . G GT 1306 PASS INDEL;BAVGPOST=0.998;BRSQ=0.977;LDAF=0.0428;AVGPOST=0.9976;RSQ=0.9797;ERATE=0.0003;THETA=0.0004;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 62482116 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2210;AVGPOST=0.9943;RSQ=0.9869;ERATE=0.0008;THETA=0.0003;AC=482;AN=2184 GT:DS:GL:BD 0.22069597 0 1 62482301 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8439;ERATE=0.0004;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62482302 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.783;LDAF=0.0032;AVGPOST=0.9982;RSQ=0.7879;ERATE=0.0006;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62482306 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.761;LDAF=0.0032;AVGPOST=0.9977;RSQ=0.6890;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62482489 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.1241;AVGPOST=0.9987;RSQ=0.9957;ERATE=0.0003;THETA=0.0006;AC=270;AN=2184 GT:DS:GL:BD 0.12362637 0 1 62482538 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7760;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62482644 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9550;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62482793 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0058;AVGPOST=0.9994;RSQ=0.9653;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62482827 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0382;AVGPOST=0.9992;RSQ=0.9909;ERATE=0.0003;THETA=0.0005;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 62482869 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6706;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62482887 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.771;LDAF=0.0049;AVGPOST=0.9988;RSQ=0.9018;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62482912 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.738;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8259;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62483328 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0138;AVGPOST=0.9999;RSQ=0.9953;ERATE=0.0003;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62483335 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7489;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62483415 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.952;LDAF=0.1348;AVGPOST=0.9793;RSQ=0.9360;ERATE=0.0122;THETA=0.0010;AC=285;AN=2184 GT:DS:GL:BD 0.13049451 0 1 62483500 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8207;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62483586 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62483599 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1238;AVGPOST=0.9999;RSQ=0.9995;ERATE=0.0003;THETA=0.0010;AC=270;AN=2184 GT:DS:GL:BD 0.12362637 0 1 62483623 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0563;AVGPOST=0.9996;RSQ=0.9969;ERATE=0.0003;THETA=0.0005;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 62483657 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0878;AVGPOST=0.9999;RSQ=0.9995;ERATE=0.0003;THETA=0.0003;AC=191;AN=2184 GT:DS:GL:BD 0.08745421 0 1 62483674 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0137;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62483684 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62483771 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0110;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62483794 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0197;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 62483815 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0170;AVGPOST=0.9998;RSQ=0.9951;ERATE=0.0003;THETA=0.0011;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 62483880 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62483885 . A AT 75 PASS INDEL;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4377;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62483939 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0138;AVGPOST=0.9999;RSQ=0.9968;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62483974 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6955;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62484025 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5492;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62484042 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.7059;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62484383 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0215;AVGPOST=0.9990;RSQ=0.9821;ERATE=0.0003;THETA=0.0003;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 62484387 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0063;AVGPOST=0.9992;RSQ=0.9431;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62484462 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.966;LDAF=0.0261;AVGPOST=0.9981;RSQ=0.9713;ERATE=0.0003;THETA=0.0004;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 62484466 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6055;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62484495 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7422;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62484536 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0030;AVGPOST=0.9988;RSQ=0.8514;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62484600 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0033;AVGPOST=0.9981;RSQ=0.8127;ERATE=0.0005;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62484717 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0028;AVGPOST=0.9993;RSQ=0.8920;ERATE=0.0003;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62484785 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.695;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7063;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62484871 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.742;LDAF=0.0024;AVGPOST=0.9974;RSQ=0.5675;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62484878 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.818;LDAF=0.0138;AVGPOST=0.9942;RSQ=0.8357;ERATE=0.0008;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62484992 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0025;AVGPOST=0.9993;RSQ=0.8614;ERATE=0.0005;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62485121 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0114;AVGPOST=0.9990;RSQ=0.9613;ERATE=0.0004;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62485147 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1069;AVGPOST=0.9990;RSQ=0.9962;ERATE=0.0004;THETA=0.0005;AC=232;AN=2184 GT:DS:GL:BD 0.10622711 0 1 62485183 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0239;AVGPOST=0.9995;RSQ=0.9919;ERATE=0.0003;THETA=0.0004;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 62485195 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0079;AVGPOST=0.9996;RSQ=0.9780;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62485282 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8313;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62485340 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0933;AVGPOST=0.9992;RSQ=0.9965;ERATE=0.0003;THETA=0.0003;AC=203;AN=2184 GT:DS:GL:BD 0.09294872 0 1 62485440 . A AG 350 PASS INDEL;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0059;AVGPOST=0.9994;RSQ=0.9560;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62485450 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.1100;AVGPOST=0.9989;RSQ=0.9961;ERATE=0.0004;THETA=0.0006;AC=239;AN=2184 GT:DS:GL:BD 0.10943224 0 1 62485477 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1172;AVGPOST=0.9986;RSQ=0.9956;ERATE=0.0004;THETA=0.0004;AC=256;AN=2184 GT:DS:GL:BD 0.11721612 0 1 62485516 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.813;LDAF=0.0106;AVGPOST=0.9974;RSQ=0.9118;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62485566 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0388;AVGPOST=0.9981;RSQ=0.9793;ERATE=0.0005;THETA=0.0006;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 62485682 . G GA 65 PASS INDEL;BAVGPOST=0.994;BRSQ=0.491;LDAF=0.0041;AVGPOST=0.9938;RSQ=0.4120;ERATE=0.0014;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62485695 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8108;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62485704 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.975;LDAF=0.1205;AVGPOST=0.9949;RSQ=0.9832;ERATE=0.0003;THETA=0.0005;AC=263;AN=2184 GT:DS:GL:BD 0.12042125 0 1 62485757 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.682;LDAF=0.0063;AVGPOST=0.9962;RSQ=0.7611;ERATE=0.0005;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62485968 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62485983 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62485984 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0171;AVGPOST=0.9995;RSQ=0.9882;ERATE=0.0003;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 62486059 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0063;AVGPOST=0.9992;RSQ=0.9453;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62486100 . GA G 161 PASS INDEL;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4881;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62486152 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0175;AVGPOST=0.9980;RSQ=0.9487;ERATE=0.0005;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 62486221 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8102;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62486305 . A AAAAG 63 PASS INDEL;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4407;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62486381 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1189;AVGPOST=0.9987;RSQ=0.9957;ERATE=0.0003;THETA=0.0006;AC=260;AN=2184 GT:DS:GL:BD 0.11904762 0 1 62486521 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1253;AVGPOST=0.9966;RSQ=0.9895;ERATE=0.0005;THETA=0.0003;AC=274;AN=2184 GT:DS:GL:BD 0.12545788 0 1 62486615 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0057;AVGPOST=0.9993;RSQ=0.9458;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62486616 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1243;AVGPOST=0.9983;RSQ=0.9948;ERATE=0.0003;THETA=0.0004;AC=272;AN=2184 GT:DS:GL:BD 0.12454212 0 1 62486648 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0099;AVGPOST=0.9991;RSQ=0.9570;ERATE=0.0004;THETA=0.0009;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62486664 . GT G 363 PASS INDEL;BAVGPOST=0.988;BRSQ=0.654;LDAF=0.0184;AVGPOST=0.9837;RSQ=0.6431;ERATE=0.0024;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62486748 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.975;LDAF=0.4166;AVGPOST=0.9908;RSQ=0.9855;ERATE=0.0013;THETA=0.0003;AC=911;AN=2184 GT:DS:GL:BD 0.41712454 0 1 62486770 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.625;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.5224;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62486820 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7957;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62486826 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.868;LDAF=0.0044;AVGPOST=0.9986;RSQ=0.8695;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62486837 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.1191;AVGPOST=0.9986;RSQ=0.9947;ERATE=0.0004;THETA=0.0004;AC=259;AN=2184 GT:DS:GL:BD 0.11858974 0 1 62486918 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7082;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62486964 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9706;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62487073 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2191;AVGPOST=0.9975;RSQ=0.9944;ERATE=0.0005;THETA=0.0004;AC=478;AN=2184 GT:DS:GL:BD 0.21886447 0 1 62487085 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9767;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62487128 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.4181;AVGPOST=0.9939;RSQ=0.9907;ERATE=0.0019;THETA=0.0010;AC=913;AN=2184 GT:DS:GL:BD 0.41804031 0 1 62487234 . CGTT C 2994 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0240;AVGPOST=0.9993;RSQ=0.9882;ERATE=0.0003;THETA=0.0005;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 62487235 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.7893;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62487308 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0175;AVGPOST=0.9987;RSQ=0.9694;ERATE=0.0003;THETA=0.0014;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62487431 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.1194;AVGPOST=0.9977;RSQ=0.9916;ERATE=0.0005;THETA=0.0011;AC=259;AN=2184 GT:DS:GL:BD 0.11858974 0 1 62487571 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0167;AVGPOST=0.9995;RSQ=0.9853;ERATE=0.0004;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62487630 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.774;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5611;ERATE=0.0003;THETA=0.0041;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62487678 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.5867;ERATE=0.0005;THETA=0.0071;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62487837 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5446;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62487853 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.849;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.9064;ERATE=0.0004;THETA=0.0016;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62487883 . A AT 20 PASS INDEL;BAVGPOST=1.000;BRSQ=0.738;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5570;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62488071 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.978;LDAF=0.1106;AVGPOST=0.9982;RSQ=0.9923;ERATE=0.0003;THETA=0.0034;AC=240;AN=2184 GT:DS:GL:BD 0.10989011 0 1 62488099 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.847;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.7649;ERATE=0.0004;THETA=0.0031;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62488122 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0030;AVGPOST=0.9979;RSQ=0.7640;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62488157 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.811;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62488165 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8710;ERATE=0.0003;THETA=0.0069;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62488187 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62488190 . TG T 158 PASS INDEL;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7297;ERATE=0.0003;THETA=0.0045;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62488349 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.975;LDAF=0.3872;AVGPOST=0.9835;RSQ=0.9746;ERATE=0.0061;THETA=0.0009;AC=845;AN=2184 GT:DS:GL:BD 0.38690478 0 1 62488358 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.983;LDAF=0.2324;AVGPOST=0.9912;RSQ=0.9839;ERATE=0.0006;THETA=0.0010;AC=508;AN=2184 GT:DS:GL:BD 0.23260073 0 1 62488375 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.783;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0044;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62488490 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0089;AVGPOST=0.9994;RSQ=0.9664;ERATE=0.0003;THETA=0.0028;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62488511 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8463;ERATE=0.0006;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62488519 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8540;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62488522 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1064;AVGPOST=0.9984;RSQ=0.9942;ERATE=0.0003;THETA=0.0007;AC=231;AN=2184 GT:DS:GL:BD 0.10576923 0 1 62488533 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0257;AVGPOST=0.9987;RSQ=0.9826;ERATE=0.0003;THETA=0.0041;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 62488547 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0025;AVGPOST=0.9980;RSQ=0.7100;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62488715 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.986;LDAF=0.4178;AVGPOST=0.9841;RSQ=0.9741;ERATE=0.0028;THETA=0.0112;AC=910;AN=2184 GT:DS:GL:BD 0.41666666 0 1 62488918 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.946;LDAF=0.3881;AVGPOST=0.9626;RSQ=0.9373;ERATE=0.0090;THETA=0.0005;AC=850;AN=2184 GT:DS:GL:BD 0.38919413 0 1 62489016 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2550;AVGPOST=0.9972;RSQ=0.9940;ERATE=0.0007;THETA=0.0002;AC=557;AN=2184 GT:DS:GL:BD 0.25503662 0 1 62489063 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62489080 . A AT 142 PASS INDEL;BAVGPOST=0.999;BRSQ=0.705;LDAF=0.0035;AVGPOST=0.9959;RSQ=0.5565;ERATE=0.0014;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62489282 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1200;AVGPOST=0.9993;RSQ=0.9977;ERATE=0.0003;THETA=0.0004;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 62489421 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5852;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62489450 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.981;LDAF=0.9451;AVGPOST=0.9951;RSQ=0.9689;ERATE=0.0003;THETA=0.0003;AC=2062;AN=2184 GT:DS:GL:BD 0.94413918 1 1 62489457 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5223;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62489470 . TG T 48 PASS INDEL;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5188;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62489544 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1199;AVGPOST=0.9992;RSQ=0.9972;ERATE=0.0004;THETA=0.0004;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 62489550 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0095;AVGPOST=0.9993;RSQ=0.9672;ERATE=0.0003;THETA=0.0001;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62489559 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6464;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62489687 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1199;AVGPOST=0.9992;RSQ=0.9973;ERATE=0.0003;THETA=0.0003;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 62489783 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9047;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62489844 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.6149;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62489846 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62489848 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0017;AVGPOST=0.9987;RSQ=0.6582;ERATE=0.0005;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62489885 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7527;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62489965 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.874;LDAF=0.0900;AVGPOST=0.9782;RSQ=0.9097;ERATE=0.0005;THETA=0.0006;AC=188;AN=2184 GT:DS:GL:BD 0.08608059 0 1 62490028 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1201;AVGPOST=0.9986;RSQ=0.9957;ERATE=0.0003;THETA=0.0004;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 62490033 . A AT 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.6254;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62490045 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62490095 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6696;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62490117 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62490155 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62490251 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7961;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62490270 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0136;AVGPOST=0.9986;RSQ=0.9600;ERATE=0.0003;THETA=0.0009;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 62490275 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62490501 . CAATAT C 61 PASS INDEL;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6347;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62490639 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.8957;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62490760 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8590;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62490777 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5581;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62490979 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7739;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62491113 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5924;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62491243 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0267;AVGPOST=0.9992;RSQ=0.9877;ERATE=0.0004;THETA=0.0003;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 62491360 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1151;AVGPOST=0.9979;RSQ=0.9921;ERATE=0.0005;THETA=0.0007;AC=252;AN=2184 GT:DS:GL:BD 0.11538462 0 1 62491447 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.985;LDAF=0.2130;AVGPOST=0.9947;RSQ=0.9890;ERATE=0.0009;THETA=0.0003;AC=464;AN=2184 GT:DS:GL:BD 0.21245421 0 1 62491452 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0064;AVGPOST=0.9982;RSQ=0.8685;ERATE=0.0005;THETA=0.0019;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62491461 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.990;LDAF=0.5104;AVGPOST=0.9942;RSQ=0.9909;ERATE=0.0007;THETA=0.0008;AC=1116;AN=2184 GT:DS:GL:BD 0.51098901 1 1 62491500 . G GATAA 357 PASS INDEL;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5922;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62491589 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0082;AVGPOST=0.9996;RSQ=0.9779;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62491646 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7949;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62491663 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62491723 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7255;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62491779 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0102;AVGPOST=0.9993;RSQ=0.9647;ERATE=0.0003;THETA=0.0009;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62491904 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.2895;AVGPOST=0.9980;RSQ=0.9962;ERATE=0.0006;THETA=0.0004;AC=631;AN=2184 GT:DS:GL:BD 0.28891942 0 1 62491982 . A AGT 46 PASS INDEL;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5209;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62491983 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8260;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62492023 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9626;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62492215 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4246;AVGPOST=0.9974;RSQ=0.9961;ERATE=0.0004;THETA=0.0003;AC=926;AN=2184 GT:DS:GL:BD 0.42399266 0 1 62492246 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0087;AVGPOST=0.9997;RSQ=0.9855;ERATE=0.0003;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62492435 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7441;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62492438 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0484;AVGPOST=0.9986;RSQ=0.9893;ERATE=0.0003;THETA=0.0003;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 62492453 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0170;AVGPOST=0.9999;RSQ=0.9976;ERATE=0.0003;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 62492486 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6340;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62492506 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0055;AVGPOST=0.9982;RSQ=0.8830;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62492519 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62492539 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0943;AVGPOST=0.9995;RSQ=0.9977;ERATE=0.0003;THETA=0.0002;AC=205;AN=2184 GT:DS:GL:BD 0.09386447 0 1 62492585 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.734;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7412;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62492625 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0942;AVGPOST=0.9991;RSQ=0.9958;ERATE=0.0004;THETA=0.0003;AC=205;AN=2184 GT:DS:GL:BD 0.09386447 0 1 62492780 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1545;AVGPOST=0.9992;RSQ=0.9975;ERATE=0.0003;THETA=0.0004;AC=337;AN=2184 GT:DS:GL:BD 0.15430403 0 1 62492958 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62492993 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8303;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62493129 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8301;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62493174 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62493209 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.696;LDAF=0.0040;AVGPOST=0.9988;RSQ=0.8725;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62493212 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8467;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62493417 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6295;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62493529 rs3061008 GGGA G 19821 PASS INDEL;BAVGPOST=0.996;BRSQ=0.977;LDAF=0.0927;AVGPOST=0.9963;RSQ=0.9854;ERATE=0.0005;THETA=0.0005;AC=201;AN=2184 GT:DS:GL:BD 0.09203297 0 1 62493619 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62493677 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.5013;AVGPOST=0.9959;RSQ=0.9933;ERATE=0.0012;THETA=0.0014;AC=1094;AN=2184 GT:DS:GL:BD 0.50091577 1 1 62493820 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5662;AVGPOST=0.9985;RSQ=0.9975;ERATE=0.0005;THETA=0.0003;AC=1236;AN=2184 GT:DS:GL:BD 0.56593406 1 1 62493832 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6730;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62493837 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1176;AVGPOST=0.9992;RSQ=0.9967;ERATE=0.0004;THETA=0.0002;AC=257;AN=2184 GT:DS:GL:BD 0.11767399 0 1 62493890 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.957;LDAF=0.0192;AVGPOST=0.9956;RSQ=0.9124;ERATE=0.0004;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62494003 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0064;AVGPOST=0.9994;RSQ=0.9541;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62494117 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62494188 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1221;AVGPOST=0.9953;RSQ=0.9850;ERATE=0.0007;THETA=0.0004;AC=267;AN=2184 GT:DS:GL:BD 0.12225275 0 1 62494222 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0135;AVGPOST=0.9986;RSQ=0.9503;ERATE=0.0006;THETA=0.0007;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62494342 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1207;AVGPOST=0.9993;RSQ=0.9970;ERATE=0.0004;THETA=0.0005;AC=263;AN=2184 GT:DS:GL:BD 0.12042125 0 1 62494455 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.1537;AVGPOST=0.9975;RSQ=0.9927;ERATE=0.0003;THETA=0.0005;AC=335;AN=2184 GT:DS:GL:BD 0.15338828 0 1 62494492 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0096;AVGPOST=0.9998;RSQ=0.9908;ERATE=0.0003;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62494577 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5697;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62494666 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62494671 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.573;LDAF=0.0453;AVGPOST=0.9525;RSQ=0.5737;ERATE=0.0203;THETA=0.0005;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 62494726 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.7139;ERATE=0.0007;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62494861 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0941;AVGPOST=0.9994;RSQ=0.9971;ERATE=0.0003;THETA=0.0003;AC=205;AN=2184 GT:DS:GL:BD 0.09386447 0 1 62494870 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1209;AVGPOST=0.9995;RSQ=0.9980;ERATE=0.0003;THETA=0.0003;AC=263;AN=2184 GT:DS:GL:BD 0.12042125 0 1 62494904 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0266;AVGPOST=0.9999;RSQ=0.9984;ERATE=0.0003;THETA=0.0008;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 62494981 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.750;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8474;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62495033 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.721;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62495084 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7901;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62495191 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0038;AVGPOST=0.9953;RSQ=0.5627;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62495373 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.786;LDAF=0.0025;AVGPOST=0.9990;RSQ=0.8419;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62495492 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1213;AVGPOST=0.9980;RSQ=0.9937;ERATE=0.0003;THETA=0.0003;AC=263;AN=2184 GT:DS:GL:BD 0.12042125 0 1 62495566 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0068;AVGPOST=0.9999;RSQ=0.9907;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62495570 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7273;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62495671 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0273;AVGPOST=0.9987;RSQ=0.9792;ERATE=0.0003;THETA=0.0004;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 62495705 . G GC 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6226;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62495785 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.6378;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62495892 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1625;AVGPOST=0.9975;RSQ=0.9935;ERATE=0.0005;THETA=0.0006;AC=355;AN=2184 GT:DS:GL:BD 0.16254579 0 1 62495984 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.4728;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62496003 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0045;AVGPOST=0.9984;RSQ=0.8762;ERATE=0.0006;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62496041 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1206;AVGPOST=0.9997;RSQ=0.9988;ERATE=0.0003;THETA=0.0002;AC=263;AN=2184 GT:DS:GL:BD 0.12042125 0 1 62496063 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0079;AVGPOST=0.9997;RSQ=0.9808;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62496070 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0026;AVGPOST=0.9996;RSQ=0.9436;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62496118 . G GTC 21329 PASS INDEL;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1209;AVGPOST=0.9989;RSQ=0.9957;ERATE=0.0003;THETA=0.0003;AC=263;AN=2184 GT:DS:GL:BD 0.12042125 0 1 62496156 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.5718;AVGPOST=0.9970;RSQ=0.9961;ERATE=0.0004;THETA=0.0005;AC=1248;AN=2184 GT:DS:GL:BD 0.57142860 1 1 62496190 . A AT 13995 PASS INDEL;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.1195;AVGPOST=0.9981;RSQ=0.9937;ERATE=0.0004;THETA=0.0003;AC=260;AN=2184 GT:DS:GL:BD 0.11904762 0 1 62496233 rs76343495 ATG A 17448 PASS INDEL;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.1198;AVGPOST=0.9971;RSQ=0.9904;ERATE=0.0004;THETA=0.0007;AC=260;AN=2184 GT:DS:GL:BD 0.11904762 0 1 62496309 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.904;LDAF=0.0090;AVGPOST=0.9975;RSQ=0.8811;ERATE=0.0026;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62496360 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2890;AVGPOST=0.9983;RSQ=0.9969;ERATE=0.0004;THETA=0.0003;AC=630;AN=2184 GT:DS:GL:BD 0.28846154 0 1 62496592 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0957;AVGPOST=0.9992;RSQ=0.9960;ERATE=0.0003;THETA=0.0004;AC=208;AN=2184 GT:DS:GL:BD 0.09523810 0 1 62496683 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1207;AVGPOST=0.9995;RSQ=0.9979;ERATE=0.0003;THETA=0.0005;AC=263;AN=2184 GT:DS:GL:BD 0.12042125 0 1 62496698 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6738;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62496743 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1103;AVGPOST=0.9989;RSQ=0.9960;ERATE=0.0003;THETA=0.0003;AC=242;AN=2184 GT:DS:GL:BD 0.11080586 0 1 62496799 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0856;AVGPOST=0.9985;RSQ=0.9930;ERATE=0.0007;THETA=0.0002;AC=185;AN=2184 GT:DS:GL:BD 0.08470696 0 1 62496802 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6530;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62496843 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1213;AVGPOST=0.9984;RSQ=0.9951;ERATE=0.0004;THETA=0.0003;AC=263;AN=2184 GT:DS:GL:BD 0.12042125 0 1 62496888 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9741;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62496902 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1621;AVGPOST=0.9979;RSQ=0.9943;ERATE=0.0006;THETA=0.0004;AC=354;AN=2184 GT:DS:GL:BD 0.16208792 0 1 62496923 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1269;AVGPOST=0.9988;RSQ=0.9957;ERATE=0.0003;THETA=0.0005;AC=276;AN=2184 GT:DS:GL:BD 0.12637363 0 1 62497260 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1211;AVGPOST=0.9980;RSQ=0.9932;ERATE=0.0005;THETA=0.0003;AC=263;AN=2184 GT:DS:GL:BD 0.12042125 0 1 62497270 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1196;AVGPOST=0.9986;RSQ=0.9954;ERATE=0.0003;THETA=0.0016;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 62497331 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0039;AVGPOST=0.9985;RSQ=0.8412;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62497411 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1197;AVGPOST=0.9992;RSQ=0.9969;ERATE=0.0003;THETA=0.0002;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 62497582 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0018;AVGPOST=0.9987;RSQ=0.7478;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62497583 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1197;AVGPOST=0.9998;RSQ=0.9991;ERATE=0.0003;THETA=0.0008;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 62497613 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0036;AVGPOST=0.9989;RSQ=0.8739;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62497666 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.1196;AVGPOST=0.9991;RSQ=0.9963;ERATE=0.0003;THETA=0.0003;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 62497672 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.987;LDAF=0.1194;AVGPOST=0.9989;RSQ=0.9958;ERATE=0.0004;THETA=0.0004;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 62497692 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2741;AVGPOST=0.9990;RSQ=0.9979;ERATE=0.0003;THETA=0.0002;AC=598;AN=2184 GT:DS:GL:BD 0.27380952 0 1 62497693 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0105;AVGPOST=0.9993;RSQ=0.9686;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 62497716 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62497833 . CT C 215 PASS INDEL;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6088;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62497913 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0179;AVGPOST=0.9988;RSQ=0.9762;ERATE=0.0003;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 62497938 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0177;AVGPOST=0.9993;RSQ=0.9838;ERATE=0.0003;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62497985 rs78365806 C CCTGTCTGTGACCT 58097 PASS INDEL;BAVGPOST=0.987;BRSQ=0.951;LDAF=0.1251;AVGPOST=0.9951;RSQ=0.9826;ERATE=0.0009;THETA=0.0005;AC=275;AN=2184 GT:DS:GL:BD 0.12591575 0 1 62498141 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.990;LDAF=0.5677;AVGPOST=0.9946;RSQ=0.9917;ERATE=0.0009;THETA=0.0003;AC=1239;AN=2184 GT:DS:GL:BD 0.56730771 1 1 62498340 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0088;AVGPOST=0.9999;RSQ=0.9924;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62498364 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.7079;ERATE=0.0003;THETA=0.0036;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62498497 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5966;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62498505 . CT C 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7117;ERATE=0.0003;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62498593 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.994;LDAF=0.5619;AVGPOST=0.9868;RSQ=0.9803;ERATE=0.0031;THETA=0.0004;AC=1230;AN=2184 GT:DS:GL:BD 0.56318682 1 1 62498676 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8371;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62498697 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.0821;AVGPOST=0.9973;RSQ=0.9869;ERATE=0.0004;THETA=0.0003;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 62498825 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4134;AVGPOST=0.9987;RSQ=0.9978;ERATE=0.0005;THETA=0.0002;AC=902;AN=2184 GT:DS:GL:BD 0.41300365 0 1 62498883 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8702;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62499044 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.5577;AVGPOST=0.9908;RSQ=0.9863;ERATE=0.0026;THETA=0.0004;AC=1222;AN=2184 GT:DS:GL:BD 0.55952382 1 1 62499141 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5525;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0005;THETA=0.0044;AC=1206;AN=2184 GT:DS:GL:BD 0.55219781 1 1 62499164 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8503;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62499277 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62499305 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0041;AVGPOST=0.9984;RSQ=0.8622;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62499470 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=0.9999;RSQ=0.9926;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62499504 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62499641 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0202;AVGPOST=0.9998;RSQ=0.9947;ERATE=0.0003;THETA=0.0002;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 62499649 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6963;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62499657 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.7031;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62499673 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1415;AVGPOST=0.9984;RSQ=0.9957;ERATE=0.0005;THETA=0.0003;AC=307;AN=2184 GT:DS:GL:BD 0.14056776 0 1 62499682 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0203;AVGPOST=0.9996;RSQ=0.9905;ERATE=0.0003;THETA=0.0013;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 62499864 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5981;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62500158 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1330;AVGPOST=0.9989;RSQ=0.9965;ERATE=0.0004;THETA=0.0005;AC=290;AN=2184 GT:DS:GL:BD 0.13278389 0 1 62500169 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62500198 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.718;LDAF=0.0042;AVGPOST=0.9963;RSQ=0.7274;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62500214 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1337;AVGPOST=0.9986;RSQ=0.9954;ERATE=0.0004;THETA=0.0004;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 62500254 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.6885;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62500265 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0030;AVGPOST=0.9985;RSQ=0.8067;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62500266 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8686;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62500350 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8967;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62500387 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0934;AVGPOST=0.9994;RSQ=0.9969;ERATE=0.0003;THETA=0.0013;AC=204;AN=2184 GT:DS:GL:BD 0.09340660 0 1 62500466 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.985;LDAF=0.1409;AVGPOST=0.9982;RSQ=0.9946;ERATE=0.0004;THETA=0.0002;AC=307;AN=2184 GT:DS:GL:BD 0.14056776 0 1 62500468 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0029;AVGPOST=0.9979;RSQ=0.7148;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62500538 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.5965;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62500555 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.5513;AVGPOST=0.9958;RSQ=0.9940;ERATE=0.0015;THETA=0.0006;AC=1204;AN=2184 GT:DS:GL:BD 0.55128205 1 1 62500598 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9244;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62500601 . TA T 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0036;AVGPOST=0.9968;RSQ=0.6392;ERATE=0.0006;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62500620 . GAA G 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4129;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62500658 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0105;AVGPOST=0.9988;RSQ=0.9538;ERATE=0.0004;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62500659 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6550;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62500662 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.773;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8246;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62500675 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.636;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7150;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62500704 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0093;AVGPOST=0.9987;RSQ=0.9423;ERATE=0.0005;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62500764 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2863;AVGPOST=0.9976;RSQ=0.9961;ERATE=0.0004;THETA=0.0006;AC=625;AN=2184 GT:DS:GL:BD 0.28617215 0 1 62500866 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1322;AVGPOST=0.9994;RSQ=0.9980;ERATE=0.0003;THETA=0.0003;AC=289;AN=2184 GT:DS:GL:BD 0.13232601 0 1 62500905 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8369;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62500941 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0030;AVGPOST=0.9990;RSQ=0.8582;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62500953 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8037;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62500976 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2793;AVGPOST=0.9981;RSQ=0.9965;ERATE=0.0005;THETA=0.0013;AC=610;AN=2184 GT:DS:GL:BD 0.27930403 0 1 62501094 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.2847;AVGPOST=0.9971;RSQ=0.9948;ERATE=0.0006;THETA=0.0005;AC=620;AN=2184 GT:DS:GL:BD 0.28388280 0 1 62501137 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0038;AVGPOST=0.9998;RSQ=0.9767;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62501151 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6007;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62501173 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0069;AVGPOST=0.9994;RSQ=0.9613;ERATE=0.0003;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62501231 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.2840;AVGPOST=0.9975;RSQ=0.9954;ERATE=0.0005;THETA=0.0003;AC=619;AN=2184 GT:DS:GL:BD 0.28342491 0 1 62501236 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0100;AVGPOST=0.9992;RSQ=0.9688;ERATE=0.0003;THETA=0.0015;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62501267 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0072;AVGPOST=0.9988;RSQ=0.9228;ERATE=0.0004;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62501287 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.985;LDAF=0.1588;AVGPOST=0.9936;RSQ=0.9842;ERATE=0.0006;THETA=0.0068;AC=348;AN=2184 GT:DS:GL:BD 0.15934066 0 1 62501371 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1028;AVGPOST=0.9956;RSQ=0.9839;ERATE=0.0003;THETA=0.0028;AC=220;AN=2184 GT:DS:GL:BD 0.10073260 0 1 62501712 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6554;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62501783 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0203;AVGPOST=0.9995;RSQ=0.9884;ERATE=0.0004;THETA=0.0018;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 62501810 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0358;AVGPOST=0.9995;RSQ=0.9936;ERATE=0.0004;THETA=0.0052;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 62501843 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0213;AVGPOST=0.9995;RSQ=0.9892;ERATE=0.0003;THETA=0.0047;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 62501918 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.791;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6377;ERATE=0.0003;THETA=0.0039;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62501922 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6555;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62501935 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8769;ERATE=0.0003;THETA=0.0024;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62502329 . AG A 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8512;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62502490 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0037;AVGPOST=0.9943;RSQ=0.5361;ERATE=0.0003;THETA=0.0069;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62502491 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.766;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7153;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62502576 . A AG 15 PASS INDEL;BAVGPOST=0.996;BRSQ=0.340;LDAF=0.0050;AVGPOST=0.9945;RSQ=0.5959;ERATE=0.0005;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62502616 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62502824 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5407;AVGPOST=0.9979;RSQ=0.9967;ERATE=0.0003;THETA=0.0018;AC=1180;AN=2184 GT:DS:GL:BD 0.54029304 1 1 62502840 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.8097;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62502844 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62502873 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9987;RSQ=0.8354;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62503016 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8261;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62503059 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0602;AVGPOST=0.9992;RSQ=0.9946;ERATE=0.0003;THETA=0.0004;AC=131;AN=2184 GT:DS:GL:BD 0.05998169 0 1 62503075 . TGAG T 220 PASS INDEL;BAVGPOST=0.999;BRSQ=0.697;LDAF=0.0033;AVGPOST=0.9963;RSQ=0.5687;ERATE=0.0003;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62503173 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62503266 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0893;AVGPOST=0.9994;RSQ=0.9972;ERATE=0.0003;THETA=0.0004;AC=195;AN=2184 GT:DS:GL:BD 0.08928572 0 1 62503314 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8520;ERATE=0.0004;THETA=0.0023;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62503351 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.943;LDAF=0.0104;AVGPOST=0.9976;RSQ=0.9021;ERATE=0.0006;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62503518 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.670;LDAF=0.0073;AVGPOST=0.9913;RSQ=0.5699;ERATE=0.0036;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62503599 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8380;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62503852 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62503897 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0265;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 62503899 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9882;ERATE=0.0003;THETA=0.0001;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62503914 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0041;AVGPOST=0.9996;RSQ=0.9608;ERATE=0.0003;THETA=0.0013;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62503955 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9997;RSQ=0.9823;ERATE=0.0003;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62504003 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62504061 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9988;RSQ=0.9486;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62504074 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0004;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62504080 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62504123 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1597;AVGPOST=0.9979;RSQ=0.9945;ERATE=0.0004;THETA=0.0006;AC=348;AN=2184 GT:DS:GL:BD 0.15934066 0 1 62504166 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1593;AVGPOST=0.9979;RSQ=0.9943;ERATE=0.0003;THETA=0.0003;AC=348;AN=2184 GT:DS:GL:BD 0.15934066 0 1 62504168 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2729;AVGPOST=0.9981;RSQ=0.9961;ERATE=0.0004;THETA=0.0003;AC=595;AN=2184 GT:DS:GL:BD 0.27243590 0 1 62504182 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.748;LDAF=0.0023;AVGPOST=0.9985;RSQ=0.7280;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62504194 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1441;AVGPOST=0.9984;RSQ=0.9948;ERATE=0.0004;THETA=0.0003;AC=314;AN=2184 GT:DS:GL:BD 0.14377290 0 1 62504215 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7986;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62504221 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5301;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0003;THETA=0.0003;AC=1157;AN=2184 GT:DS:GL:BD 0.52976191 1 1 62504385 . G GT 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5682;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62504475 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0007;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62504476 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0041;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62504495 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62504500 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62504503 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62504587 . A AT 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5667;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62504715 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1511;AVGPOST=0.9996;RSQ=0.9991;ERATE=0.0003;THETA=0.0003;AC=330;AN=2184 GT:DS:GL:BD 0.15109891 0 1 62504841 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1197;AVGPOST=0.9999;RSQ=0.9996;ERATE=0.0003;THETA=0.0003;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 62504861 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62504862 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62504939 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5303;AVGPOST=0.9997;RSQ=0.9996;ERATE=0.0003;THETA=0.0007;AC=1157;AN=2184 GT:DS:GL:BD 0.52976191 1 1 62504958 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1600;AVGPOST=0.9999;RSQ=0.9997;ERATE=0.0003;THETA=0.0002;AC=349;AN=2184 GT:DS:GL:BD 0.15979853 0 1 62505044 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3421;AVGPOST=0.9983;RSQ=0.9973;ERATE=0.0004;THETA=0.0003;AC=745;AN=2184 GT:DS:GL:BD 0.34111720 0 1 62505049 . G GA 71 PASS INDEL;BAVGPOST=0.986;BRSQ=0.517;LDAF=0.0249;AVGPOST=0.9693;RSQ=0.5095;ERATE=0.0077;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 62505050 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62505280 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1459;AVGPOST=0.9975;RSQ=0.9939;ERATE=0.0003;THETA=0.0006;AC=317;AN=2184 GT:DS:GL:BD 0.14514652 0 1 62505421 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2767;AVGPOST=0.9979;RSQ=0.9954;ERATE=0.0006;THETA=0.0003;AC=603;AN=2184 GT:DS:GL:BD 0.27609891 0 1 62505431 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0153;AVGPOST=0.9995;RSQ=0.9867;ERATE=0.0003;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62505466 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7111;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62505534 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0208;AVGPOST=0.9983;RSQ=0.9719;ERATE=0.0004;THETA=0.0003;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 62505563 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62505564 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1443;AVGPOST=0.9989;RSQ=0.9969;ERATE=0.0003;THETA=0.0004;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 62505613 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1062;AVGPOST=0.9995;RSQ=0.9977;ERATE=0.0003;THETA=0.0005;AC=231;AN=2184 GT:DS:GL:BD 0.10576923 0 1 62505614 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.630;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8519;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62505616 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0843;AVGPOST=0.9991;RSQ=0.9950;ERATE=0.0005;THETA=0.0004;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 62505729 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4448;AVGPOST=0.9952;RSQ=0.9940;ERATE=0.0004;THETA=0.0003;AC=967;AN=2184 GT:DS:GL:BD 0.44276556 0 1 62505840 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0152;AVGPOST=0.9992;RSQ=0.9748;ERATE=0.0004;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62505883 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1382;AVGPOST=0.9977;RSQ=0.9922;ERATE=0.0005;THETA=0.0003;AC=300;AN=2184 GT:DS:GL:BD 0.13736264 0 1 62505937 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.696;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.6999;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62506069 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0129;AVGPOST=0.9953;RSQ=0.8655;ERATE=0.0004;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 62506302 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5980;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62506304 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8552;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62506329 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5244;AVGPOST=0.9976;RSQ=0.9962;ERATE=0.0006;THETA=0.0005;AC=1145;AN=2184 GT:DS:GL:BD 0.52426738 1 1 62506363 rs112684212 CAA C 19443 PASS INDEL;BAVGPOST=0.996;BRSQ=0.986;LDAF=0.1531;AVGPOST=0.9972;RSQ=0.9924;ERATE=0.0006;THETA=0.0008;AC=333;AN=2184 GT:DS:GL:BD 0.15247253 0 1 62506473 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3217;AVGPOST=0.9981;RSQ=0.9972;ERATE=0.0004;THETA=0.0057;AC=701;AN=2184 GT:DS:GL:BD 0.32097068 0 1 62506476 . GT G 15602 PASS INDEL;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1537;AVGPOST=0.9984;RSQ=0.9959;ERATE=0.0003;THETA=0.0055;AC=334;AN=2184 GT:DS:GL:BD 0.15293041 0 1 62506969 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0190;AVGPOST=0.9994;RSQ=0.9885;ERATE=0.0003;THETA=0.0005;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 62507002 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1427;AVGPOST=0.9976;RSQ=0.9926;ERATE=0.0004;THETA=0.0004;AC=311;AN=2184 GT:DS:GL:BD 0.14239927 0 1 62507010 . AG A 283 PASS INDEL;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62507035 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2492;AVGPOST=0.9979;RSQ=0.9965;ERATE=0.0003;THETA=0.0003;AC=542;AN=2184 GT:DS:GL:BD 0.24816850 0 1 62507070 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0147;AVGPOST=0.9999;RSQ=0.9970;ERATE=0.0003;THETA=0.0046;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 62507127 . ATG A 178 PASS INDEL;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0020;AVGPOST=0.9982;RSQ=0.6305;ERATE=0.0005;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62507144 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2560;AVGPOST=0.9964;RSQ=0.9934;ERATE=0.0006;THETA=0.0004;AC=559;AN=2184 GT:DS:GL:BD 0.25595239 0 1 62507220 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8840;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62507309 . C CTGAAA 420 PASS INDEL;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9233;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62507484 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.580;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5647;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62507583 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.625;LDAF=0.0061;AVGPOST=0.9947;RSQ=0.6426;ERATE=0.0008;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62507584 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.619;LDAF=0.0045;AVGPOST=0.9946;RSQ=0.5362;ERATE=0.0007;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62507599 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0096;AVGPOST=0.9963;RSQ=0.8567;ERATE=0.0004;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62507633 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.619;LDAF=0.0062;AVGPOST=0.9951;RSQ=0.6723;ERATE=0.0005;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62507690 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.595;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.5025;ERATE=0.0006;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62507693 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.986;LDAF=0.0805;AVGPOST=0.9975;RSQ=0.9872;ERATE=0.0008;THETA=0.0026;AC=176;AN=2184 GT:DS:GL:BD 0.08058608 0 1 62507773 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0082;AVGPOST=0.9989;RSQ=0.9378;ERATE=0.0004;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62507988 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9998;RSQ=0.9842;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62508034 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0094;AVGPOST=0.9987;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62508119 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0068;AVGPOST=0.9999;RSQ=0.9939;ERATE=0.0003;THETA=0.0009;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62508144 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.0963;AVGPOST=0.9987;RSQ=0.9942;ERATE=0.0004;THETA=0.0004;AC=210;AN=2184 GT:DS:GL:BD 0.09615385 0 1 62508158 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.684;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5910;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62508184 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6580;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62508273 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62508322 . A AT 16750 PASS INDEL;BAVGPOST=0.951;BRSQ=0.877;LDAF=0.7797;AVGPOST=0.8975;RSQ=0.8056;ERATE=0.0129;THETA=0.0003;AC=1771;AN=2184 GT:DS:GL:BD 0.81089741 1 1 62508330 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.956;LDAF=0.8256;AVGPOST=0.9717;RSQ=0.9338;ERATE=0.0062;THETA=0.0002;AC=1819;AN=2184 GT:DS:GL:BD 0.83287543 1 1 62508331 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.1111;AVGPOST=0.9957;RSQ=0.9827;ERATE=0.0007;THETA=0.0004;AC=241;AN=2184 GT:DS:GL:BD 0.11034799 0 1 62508465 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6301;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62508622 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9998;RSQ=0.9875;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62508628 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.2378;AVGPOST=0.9993;RSQ=0.9985;ERATE=0.0003;THETA=0.0005;AC=518;AN=2184 GT:DS:GL:BD 0.23717949 0 1 62508652 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=1.0000;RSQ=0.9968;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62508672 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.0743;AVGPOST=0.9993;RSQ=0.9956;ERATE=0.0003;THETA=0.0007;AC=162;AN=2184 GT:DS:GL:BD 0.07417583 0 1 62508673 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7921;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62508689 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.997;LDAF=0.3947;AVGPOST=0.9985;RSQ=0.9974;ERATE=0.0004;THETA=0.0004;AC=862;AN=2184 GT:DS:GL:BD 0.39468864 0 1 62508735 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8303;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62508764 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62508782 . CT C 35 PASS INDEL;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4563;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62508937 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0139;AVGPOST=0.9995;RSQ=0.9832;ERATE=0.0003;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62508941 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0004;AVGPOST=0.9992;RSQ=0.1376;ERATE=0.0003;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62508974 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0032;AVGPOST=0.9987;RSQ=0.8266;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62509116 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0042;AVGPOST=0.9994;RSQ=0.9285;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62509122 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2724;AVGPOST=0.9982;RSQ=0.9965;ERATE=0.0006;THETA=0.0003;AC=594;AN=2184 GT:DS:GL:BD 0.27197802 0 1 62509141 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.764;LDAF=0.0040;AVGPOST=0.9980;RSQ=0.7884;ERATE=0.0004;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62509204 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0013;AVGPOST=0.9996;RSQ=0.8876;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62509256 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62509257 . AG A 49 PASS INDEL;BAVGPOST=0.999;BRSQ=0.774;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7249;ERATE=0.0005;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62509371 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0047;AVGPOST=0.9989;RSQ=0.9124;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62509400 . G GA 361 PASS INDEL;BAVGPOST=0.903;BRSQ=0.532;LDAF=0.0975;AVGPOST=0.9394;RSQ=0.7563;ERATE=0.0011;THETA=0.0004;AC=200;AN=2184 GT:DS:GL:BD 0.09157509 0 1 62509425 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0062;AVGPOST=0.9995;RSQ=0.9584;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62509432 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1436;AVGPOST=0.9980;RSQ=0.9934;ERATE=0.0005;THETA=0.0005;AC=314;AN=2184 GT:DS:GL:BD 0.14377290 0 1 62509468 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.632;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7106;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62509521 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.6277;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62509546 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6785;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62509548 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5774;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62509629 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8623;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62509654 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0091;AVGPOST=0.9984;RSQ=0.9373;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62509727 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8961;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62509831 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8338;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62509895 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8894;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62509913 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2595;AVGPOST=0.9989;RSQ=0.9979;ERATE=0.0005;THETA=0.0004;AC=566;AN=2184 GT:DS:GL:BD 0.25915751 0 1 62510071 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.727;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9073;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62510079 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.7085;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62510082 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0021;AVGPOST=0.9976;RSQ=0.5978;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62510120 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9998;RSQ=0.9862;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62510154 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0725;AVGPOST=0.9989;RSQ=0.9943;ERATE=0.0004;THETA=0.0002;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 62510214 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5864;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62510219 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8116;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62510264 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5177;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62510457 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2576;AVGPOST=0.9989;RSQ=0.9982;ERATE=0.0003;THETA=0.0003;AC=562;AN=2184 GT:DS:GL:BD 0.25732601 0 1 62510584 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2574;AVGPOST=0.9989;RSQ=0.9979;ERATE=0.0004;THETA=0.0003;AC=561;AN=2184 GT:DS:GL:BD 0.25686812 0 1 62510719 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.521;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.3366;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62510783 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5209;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62510786 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.934;LDAF=0.0189;AVGPOST=0.9947;RSQ=0.9003;ERATE=0.0003;THETA=0.0003;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 62510825 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.652;LDAF=0.0043;AVGPOST=0.9970;RSQ=0.7209;ERATE=0.0005;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62511018 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1256;AVGPOST=0.9987;RSQ=0.9959;ERATE=0.0003;THETA=0.0004;AC=273;AN=2184 GT:DS:GL:BD 0.12500000 0 1 62511093 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8664;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62511099 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5729;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62511237 . TTGAC T 22563 PASS INDEL;BAVGPOST=0.990;BRSQ=0.961;LDAF=0.1257;AVGPOST=0.9972;RSQ=0.9906;ERATE=0.0006;THETA=0.0005;AC=275;AN=2184 GT:DS:GL:BD 0.12591575 0 1 62511287 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7820;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62511367 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.0870;AVGPOST=0.9987;RSQ=0.9933;ERATE=0.0004;THETA=0.0004;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 62511408 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.878;LDAF=0.0060;AVGPOST=0.9972;RSQ=0.8092;ERATE=0.0007;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62511427 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0132;AVGPOST=0.9996;RSQ=0.9872;ERATE=0.0003;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 62511461 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.5109;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62511542 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0302;AVGPOST=0.9995;RSQ=0.9925;ERATE=0.0003;THETA=0.0004;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 62511611 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.702;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.5990;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62511734 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0961;AVGPOST=0.9987;RSQ=0.9947;ERATE=0.0003;THETA=0.0003;AC=209;AN=2184 GT:DS:GL:BD 0.09569597 0 1 62511826 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0025;AVGPOST=0.9972;RSQ=0.6039;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62511906 . AAGGG A 435 PASS INDEL;BAVGPOST=0.992;BRSQ=0.698;LDAF=0.0268;AVGPOST=0.9758;RSQ=0.6264;ERATE=0.0030;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 62511933 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.951;LDAF=0.5016;AVGPOST=0.9490;RSQ=0.9272;ERATE=0.0128;THETA=0.0002;AC=1107;AN=2184 GT:DS:GL:BD 0.50686812 1 1 62512112 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0021;AVGPOST=0.9978;RSQ=0.6161;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62512253 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.6434;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62512289 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.8241;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62512298 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.913;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7652;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62512314 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8455;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62512435 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.7589;ERATE=0.0005;THETA=0.0019;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62512735 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1365;AVGPOST=0.9993;RSQ=0.9976;ERATE=0.0003;THETA=0.0002;AC=297;AN=2184 GT:DS:GL:BD 0.13598901 0 1 62512893 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8096;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62512957 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5790;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62512998 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0063;AVGPOST=0.9984;RSQ=0.8888;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62513095 rs111400658 A AT 14756 PASS INDEL;BAVGPOST=0.968;BRSQ=0.928;LDAF=0.2477;AVGPOST=0.9803;RSQ=0.9642;ERATE=0.0017;THETA=0.0009;AC=545;AN=2184 GT:DS:GL:BD 0.24954212 0 1 62513169 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.637;LDAF=0.0021;AVGPOST=0.9978;RSQ=0.5258;ERATE=0.0009;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62513239 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1290;AVGPOST=0.9977;RSQ=0.9928;ERATE=0.0003;THETA=0.0003;AC=279;AN=2184 GT:DS:GL:BD 0.12774725 0 1 62513257 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3168;AVGPOST=0.9981;RSQ=0.9967;ERATE=0.0003;THETA=0.0003;AC=691;AN=2184 GT:DS:GL:BD 0.31639194 0 1 62513438 . G GA 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0026;AVGPOST=0.9970;RSQ=0.5773;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62513600 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62513845 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0960;AVGPOST=0.9989;RSQ=0.9955;ERATE=0.0003;THETA=0.0003;AC=209;AN=2184 GT:DS:GL:BD 0.09569597 0 1 62513938 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.982;LDAF=0.1259;AVGPOST=0.9989;RSQ=0.9962;ERATE=0.0004;THETA=0.0004;AC=275;AN=2184 GT:DS:GL:BD 0.12591575 0 1 62513944 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.990;LDAF=0.2566;AVGPOST=0.9969;RSQ=0.9946;ERATE=0.0006;THETA=0.0005;AC=558;AN=2184 GT:DS:GL:BD 0.25549451 0 1 62514217 rs76274159 C CA 652 PASS INDEL;BAVGPOST=0.477;BRSQ=0.135;LDAF=0.3742;AVGPOST=0.6400;RSQ=0.3268;ERATE=0.0295;THETA=0.0005;AC=678;AN=2184 GT:DS:GL:BD 0.31043956 0 1 62514282 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.3174;AVGPOST=0.9987;RSQ=0.9979;ERATE=0.0005;THETA=0.0007;AC=693;AN=2184 GT:DS:GL:BD 0.31730768 0 1 62514416 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.5263;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62514429 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2573;AVGPOST=0.9988;RSQ=0.9975;ERATE=0.0005;THETA=0.0007;AC=560;AN=2184 GT:DS:GL:BD 0.25641027 0 1 62514599 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.898;LDAF=0.0229;AVGPOST=0.9951;RSQ=0.9204;ERATE=0.0003;THETA=0.0002;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 62514727 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62514768 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2588;AVGPOST=0.9970;RSQ=0.9944;ERATE=0.0011;THETA=0.0004;AC=564;AN=2184 GT:DS:GL:BD 0.25824177 0 1 62514850 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0069;AVGPOST=0.9997;RSQ=0.9813;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62514891 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=0.9982;RSQ=0.9017;ERATE=0.0004;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62514926 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7845;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62514975 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0098;AVGPOST=0.9968;RSQ=0.8740;ERATE=0.0005;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62515003 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1234;AVGPOST=0.9988;RSQ=0.9960;ERATE=0.0004;THETA=0.0003;AC=268;AN=2184 GT:DS:GL:BD 0.12271062 0 1 62515032 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8845;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62515057 . A ATTG 135 PASS INDEL;BAVGPOST=1.000;BRSQ=0.745;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.5224;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62515148 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62515225 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6291;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62515296 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6359;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62515541 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6105;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62515736 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.0989;AVGPOST=0.9980;RSQ=0.9908;ERATE=0.0006;THETA=0.0004;AC=214;AN=2184 GT:DS:GL:BD 0.09798535 0 1 62515849 . TA T 7822 PASS INDEL;BAVGPOST=0.996;BRSQ=0.983;LDAF=0.1269;AVGPOST=0.9905;RSQ=0.9666;ERATE=0.0016;THETA=0.0004;AC=273;AN=2184 GT:DS:GL:BD 0.12500000 0 1 62515867 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0138;AVGPOST=0.9963;RSQ=0.9077;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62515985 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0052;AVGPOST=0.9997;RSQ=0.9704;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62516002 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0069;AVGPOST=0.9997;RSQ=0.9822;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62516123 . C CCA 380 PASS INDEL;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4339;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62516171 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.6335;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62516175 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9857;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62516176 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.862;LDAF=0.0035;AVGPOST=0.9989;RSQ=0.8723;ERATE=0.0005;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62516306 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62516401 . CAG C 20524 PASS INDEL;BAVGPOST=0.995;BRSQ=0.978;LDAF=0.1222;AVGPOST=0.9977;RSQ=0.9916;ERATE=0.0006;THETA=0.0003;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 62516588 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62516657 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62516664 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62516682 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62516683 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5252;AVGPOST=1.0000;RSQ=0.9999;ERATE=0.0003;THETA=0.0006;AC=1146;AN=2184 GT:DS:GL:BD 0.52472526 1 1 62516843 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6913;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62516965 . C CT 287 PASS INDEL;BAVGPOST=0.985;BRSQ=0.560;LDAF=0.0281;AVGPOST=0.9688;RSQ=0.5584;ERATE=0.0085;THETA=0.0007;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 62517021 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9562;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62517035 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0599;AVGPOST=0.9981;RSQ=0.9884;ERATE=0.0003;THETA=0.0003;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 62517246 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.738;LDAF=0.0072;AVGPOST=0.9955;RSQ=0.7632;ERATE=0.0005;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62517281 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.737;LDAF=0.0118;AVGPOST=0.9953;RSQ=0.8331;ERATE=0.0004;THETA=0.0027;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62517292 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0026;AVGPOST=0.9989;RSQ=0.8136;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62517305 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.924;LDAF=0.1559;AVGPOST=0.9820;RSQ=0.9478;ERATE=0.0007;THETA=0.0003;AC=333;AN=2184 GT:DS:GL:BD 0.15247253 0 1 62517347 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0022;AVGPOST=0.9990;RSQ=0.8116;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62517443 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.726;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6595;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62517551 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0032;AVGPOST=0.9996;RSQ=0.9483;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62517630 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.768;LDAF=0.0036;AVGPOST=0.9997;RSQ=0.9617;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62517650 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0025;AVGPOST=0.9987;RSQ=0.7739;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62517657 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.846;LDAF=0.0121;AVGPOST=0.9970;RSQ=0.9100;ERATE=0.0004;THETA=0.0002;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62517703 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2747;AVGPOST=0.9983;RSQ=0.9969;ERATE=0.0004;THETA=0.0003;AC=599;AN=2184 GT:DS:GL:BD 0.27426741 0 1 62517744 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.815;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7034;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62517919 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.752;LDAF=0.0029;AVGPOST=0.9984;RSQ=0.7752;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62517922 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2810;AVGPOST=0.9982;RSQ=0.9967;ERATE=0.0003;THETA=0.0005;AC=612;AN=2184 GT:DS:GL:BD 0.28021979 0 1 62517947 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0784;AVGPOST=0.9993;RSQ=0.9963;ERATE=0.0003;THETA=0.0005;AC=170;AN=2184 GT:DS:GL:BD 0.07783883 0 1 62518034 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.834;LDAF=0.0065;AVGPOST=0.9965;RSQ=0.8141;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62518076 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5216;AVGPOST=0.9940;RSQ=0.9915;ERATE=0.0009;THETA=0.0013;AC=1135;AN=2184 GT:DS:GL:BD 0.51968867 1 1 62518080 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.899;LDAF=0.0131;AVGPOST=0.9953;RSQ=0.8651;ERATE=0.0004;THETA=0.0002;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62518084 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5234;AVGPOST=0.9967;RSQ=0.9951;ERATE=0.0004;THETA=0.0012;AC=1142;AN=2184 GT:DS:GL:BD 0.52289379 1 1 62518329 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.977;LDAF=0.2413;AVGPOST=0.9968;RSQ=0.9932;ERATE=0.0006;THETA=0.0005;AC=529;AN=2184 GT:DS:GL:BD 0.24221611 0 1 62518341 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.814;LDAF=0.0059;AVGPOST=0.9987;RSQ=0.9162;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62518357 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.445;LDAF=0.0124;AVGPOST=0.9809;RSQ=0.4293;ERATE=0.0034;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62518369 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.4493;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62518434 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.5502;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62518459 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3821;AVGPOST=0.9969;RSQ=0.9947;ERATE=0.0007;THETA=0.0007;AC=835;AN=2184 GT:DS:GL:BD 0.38232601 0 1 62518499 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.760;LDAF=0.9871;AVGPOST=0.9957;RSQ=0.8573;ERATE=0.0006;THETA=0.0007;AC=2160;AN=2184 GT:DS:GL:BD 0.98901099 1 1 62518634 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62518656 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62518721 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0134;AVGPOST=0.9996;RSQ=0.9870;ERATE=0.0003;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 62518817 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62518880 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0029;AVGPOST=0.9993;RSQ=0.9049;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62518919 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0049;AVGPOST=0.9993;RSQ=0.9434;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62518972 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0045;AVGPOST=0.9995;RSQ=0.9619;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62519141 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4468;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62519332 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.689;LDAF=0.0044;AVGPOST=0.9966;RSQ=0.6845;ERATE=0.0006;THETA=0.0016;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62519345 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8358;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62519452 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.704;LDAF=0.0017;AVGPOST=0.9979;RSQ=0.5607;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62519580 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0076;AVGPOST=0.9988;RSQ=0.9385;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62519609 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6883;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62519760 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8409;ERATE=0.0005;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62519824 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0071;AVGPOST=0.9995;RSQ=0.9660;ERATE=0.0003;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62519835 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.974;LDAF=0.0229;AVGPOST=0.9979;RSQ=0.9661;ERATE=0.0003;THETA=0.0005;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 62519836 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2460;AVGPOST=0.9961;RSQ=0.9929;ERATE=0.0005;THETA=0.0005;AC=537;AN=2184 GT:DS:GL:BD 0.24587911 0 1 62519863 . T TA 486 PASS INDEL;BAVGPOST=0.919;BRSQ=0.413;LDAF=0.1279;AVGPOST=0.8461;RSQ=0.4232;ERATE=0.0255;THETA=0.0006;AC=163;AN=2184 GT:DS:GL:BD 0.07463370 0 1 62519876 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.944;LDAF=0.2428;AVGPOST=0.9666;RSQ=0.9354;ERATE=0.0067;THETA=0.0002;AC=523;AN=2184 GT:DS:GL:BD 0.23946886 0 1 62519939 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8538;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62519988 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9197;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62520130 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9443;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62520224 . AC A 153 PASS INDEL;BAVGPOST=1.000;BRSQ=0.750;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5709;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62520278 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0599;AVGPOST=0.9995;RSQ=0.9971;ERATE=0.0003;THETA=0.0006;AC=131;AN=2184 GT:DS:GL:BD 0.05998169 0 1 62520448 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0072;AVGPOST=0.9993;RSQ=0.9531;ERATE=0.0004;THETA=0.0001;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62520510 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.986;LDAF=0.5223;AVGPOST=0.9873;RSQ=0.9824;ERATE=0.0018;THETA=0.0012;AC=1142;AN=2184 GT:DS:GL:BD 0.52289379 1 1 62520587 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.834;LDAF=0.0058;AVGPOST=0.9965;RSQ=0.7519;ERATE=0.0006;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62520596 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.693;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6728;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62520855 . GA G 55 PASS INDEL;BAVGPOST=0.999;BRSQ=0.462;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.7236;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62520857 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62520941 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0027;AVGPOST=0.9997;RSQ=0.9514;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62520950 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62521093 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62521305 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3854;AVGPOST=0.9968;RSQ=0.9948;ERATE=0.0004;THETA=0.0028;AC=843;AN=2184 GT:DS:GL:BD 0.38598901 0 1 62521532 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6359;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62521668 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0006;AVGPOST=0.9991;RSQ=0.4308;ERATE=0.0003;THETA=0.0043;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62521739 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.956;LDAF=0.0160;AVGPOST=0.9985;RSQ=0.9584;ERATE=0.0003;THETA=0.0006;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62521801 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9179;ERATE=0.0003;THETA=0.0037;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62521821 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62521887 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0030;AVGPOST=0.9993;RSQ=0.9020;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62521927 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6620;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62522049 . TTG T 21 PASS INDEL;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6684;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62522218 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0071;AVGPOST=0.9985;RSQ=0.9154;ERATE=0.0004;THETA=0.0014;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62522282 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0090;AVGPOST=0.9991;RSQ=0.9525;ERATE=0.0004;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62522284 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.983;LDAF=0.3737;AVGPOST=0.9856;RSQ=0.9777;ERATE=0.0008;THETA=0.0008;AC=820;AN=2184 GT:DS:GL:BD 0.37545788 0 1 62522307 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.736;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6818;ERATE=0.0003;THETA=0.0046;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62522383 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7813;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62522472 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=0.9999;RSQ=0.9944;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62522647 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8525;ERATE=0.0003;THETA=0.0071;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62522656 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0082;AVGPOST=0.9992;RSQ=0.9562;ERATE=0.0003;THETA=0.0040;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62522787 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.820;LDAF=0.0141;AVGPOST=0.9949;RSQ=0.8740;ERATE=0.0004;THETA=0.0066;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 62522816 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0069;AVGPOST=0.9998;RSQ=0.9843;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62522884 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0001;AVGPOST=0.9999;RSQ=0.0499;ERATE=0.0003;THETA=0.0027;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62522968 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0098;AVGPOST=0.9995;RSQ=0.9802;ERATE=0.0003;THETA=0.0074;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62523037 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.895;LDAF=0.0133;AVGPOST=0.9980;RSQ=0.9370;ERATE=0.0003;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 62523221 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.9109;ERATE=0.0003;THETA=0.0041;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62523223 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.980;LDAF=0.1679;AVGPOST=0.9881;RSQ=0.9671;ERATE=0.0039;THETA=0.0008;AC=363;AN=2184 GT:DS:GL:BD 0.16620879 0 1 62523234 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0069;AVGPOST=0.9998;RSQ=0.9873;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62523239 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62523324 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5817;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62523344 . CAG C 83 PASS INDEL;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5524;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62523607 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5967;ERATE=0.0003;THETA=0.0035;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62523657 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9865;ERATE=0.0003;THETA=0.0026;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62523807 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0022;AVGPOST=0.9989;RSQ=0.8085;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62523965 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.7035;ERATE=0.0004;THETA=0.0032;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62524002 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.922;LDAF=0.0072;AVGPOST=0.9989;RSQ=0.9381;ERATE=0.0003;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62524031 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.980;LDAF=0.0877;AVGPOST=0.9940;RSQ=0.9755;ERATE=0.0006;THETA=0.0009;AC=189;AN=2184 GT:DS:GL:BD 0.08653846 0 1 62524301 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62524441 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8889;ERATE=0.0003;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62524458 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8276;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62524477 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7383;ERATE=0.0004;THETA=0.0019;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62524514 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8864;ERATE=0.0003;THETA=0.0026;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62524832 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0126;AVGPOST=0.9994;RSQ=0.9790;ERATE=0.0003;THETA=0.0052;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 62525221 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.967;LDAF=0.0339;AVGPOST=0.9967;RSQ=0.9628;ERATE=0.0005;THETA=0.0005;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 62525267 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0178;AVGPOST=0.9972;RSQ=0.9434;ERATE=0.0005;THETA=0.0048;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62525348 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5095;ERATE=0.0004;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62525538 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0049;AVGPOST=0.9993;RSQ=0.9490;ERATE=0.0003;THETA=0.0059;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62525641 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0320;AVGPOST=0.9999;RSQ=0.9987;ERATE=0.0003;THETA=0.0013;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 62525761 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62525779 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0460;AVGPOST=0.9997;RSQ=0.9974;ERATE=0.0003;THETA=0.0009;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 62525819 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0049;AVGPOST=0.9993;RSQ=0.9378;ERATE=0.0003;THETA=0.0014;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62525980 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.3848;AVGPOST=0.9967;RSQ=0.9944;ERATE=0.0006;THETA=0.0005;AC=840;AN=2184 GT:DS:GL:BD 0.38461539 0 1 62526019 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.5109;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62526040 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7214;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62526320 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.782;LDAF=0.0043;AVGPOST=0.9975;RSQ=0.7619;ERATE=0.0004;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62526321 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8851;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62526347 . CTA C 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.4955;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62526433 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0327;AVGPOST=0.9967;RSQ=0.9644;ERATE=0.0011;THETA=0.0004;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 62526475 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0065;AVGPOST=0.9996;RSQ=0.9700;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62526506 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.7034;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62526574 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7324;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62526723 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6958;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62526769 . TC T 834 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9989;RSQ=0.9399;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62526771 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0883;AVGPOST=0.9997;RSQ=0.9982;ERATE=0.0003;THETA=0.0002;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 62526785 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62526810 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9677;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62526891 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5492;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62526917 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8646;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62526958 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.835;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.5865;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62526978 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0008;AVGPOST=0.9988;RSQ=0.3684;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62527043 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0013;AVGPOST=0.9981;RSQ=0.4808;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62527207 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0082;AVGPOST=0.9992;RSQ=0.9594;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62527208 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.957;LDAF=0.0588;AVGPOST=0.9956;RSQ=0.9703;ERATE=0.0003;THETA=0.0007;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 62527219 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0294;AVGPOST=0.9988;RSQ=0.9882;ERATE=0.0003;THETA=0.0009;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 62527359 . TCTCA T 692 PASS INDEL;BAVGPOST=0.998;BRSQ=0.922;LDAF=0.0053;AVGPOST=0.9982;RSQ=0.8674;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62527363 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.960;LDAF=0.4021;AVGPOST=0.9662;RSQ=0.9464;ERATE=0.0054;THETA=0.0007;AC=883;AN=2184 GT:DS:GL:BD 0.40430403 0 1 62527433 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.555;LDAF=0.0027;AVGPOST=0.9980;RSQ=0.6900;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62527578 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.651;LDAF=0.0029;AVGPOST=0.9967;RSQ=0.5051;ERATE=0.0008;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62527665 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7458;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62527681 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0065;AVGPOST=0.9997;RSQ=0.9798;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62527762 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0036;AVGPOST=0.9991;RSQ=0.9047;ERATE=0.0003;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62527771 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62527775 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62527805 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.865;LDAF=0.0101;AVGPOST=0.9961;RSQ=0.8585;ERATE=0.0004;THETA=0.0012;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62527811 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62527877 rs113606629 CAATA C 16355 PASS INDEL;BAVGPOST=0.991;BRSQ=0.961;LDAF=0.1203;AVGPOST=0.9898;RSQ=0.9678;ERATE=0.0020;THETA=0.0003;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 62527899 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0061;AVGPOST=0.9989;RSQ=0.9253;ERATE=0.0004;THETA=0.0015;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62528008 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0289;AVGPOST=0.9980;RSQ=0.9794;ERATE=0.0004;THETA=0.0013;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 62528064 rs60747316 C CTT 7048 PASS INDEL;BAVGPOST=0.607;BRSQ=0.275;LDAF=0.6222;AVGPOST=0.6835;RSQ=0.4169;ERATE=0.0401;THETA=0.0009;AC=1403;AN=2184 GT:DS:GL:BD 0.64239925 1 1 62528106 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0067;AVGPOST=0.9980;RSQ=0.8809;ERATE=0.0006;THETA=0.0009;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62528152 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0099;AVGPOST=0.9954;RSQ=0.8182;ERATE=0.0005;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62528481 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6636;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62528738 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3198;AVGPOST=0.9985;RSQ=0.9971;ERATE=0.0004;THETA=0.0012;AC=698;AN=2184 GT:DS:GL:BD 0.31959707 0 1 62528772 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0019;AVGPOST=0.9982;RSQ=0.6734;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62528900 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0046;AVGPOST=0.9998;RSQ=0.9813;ERATE=0.0003;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62529094 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2254;AVGPOST=0.9992;RSQ=0.9981;ERATE=0.0003;THETA=0.0005;AC=491;AN=2184 GT:DS:GL:BD 0.22481684 0 1 62529269 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0019;AVGPOST=0.9977;RSQ=0.6262;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62529438 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.890;LDAF=0.0113;AVGPOST=0.9974;RSQ=0.9112;ERATE=0.0003;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 62529546 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62529855 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.7609;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62529936 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6213;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62530200 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6168;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62530228 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0485;AVGPOST=0.9991;RSQ=0.9913;ERATE=0.0004;THETA=0.0007;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 62530274 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.748;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4655;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62530342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0082;AVGPOST=0.9987;RSQ=0.9361;ERATE=0.0004;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62530368 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9681;ERATE=0.0003;THETA=0.0011;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62530630 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.757;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7785;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62530749 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0040;AVGPOST=0.9995;RSQ=0.9462;ERATE=0.0004;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62530789 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8198;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62530825 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0047;AVGPOST=0.9974;RSQ=0.8100;ERATE=0.0007;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62531153 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.659;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5440;ERATE=0.0007;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62531661 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0021;AVGPOST=0.9979;RSQ=0.6660;ERATE=0.0006;THETA=0.0021;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62531665 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62531738 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5628;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62531852 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7546;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62531995 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8116;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62532019 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.850;LDAF=0.0044;AVGPOST=0.9987;RSQ=0.8726;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62532047 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0055;AVGPOST=0.9994;RSQ=0.9545;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62532080 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.4997;ERATE=0.0006;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62532092 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.708;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4468;ERATE=0.0006;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62532095 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.767;LDAF=0.0016;AVGPOST=0.9976;RSQ=0.3646;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62532229 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0065;AVGPOST=0.9998;RSQ=0.9864;ERATE=0.0003;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62532347 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62532392 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7901;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62532656 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0041;AVGPOST=0.9991;RSQ=0.8997;ERATE=0.0004;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62532753 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0025;AVGPOST=0.9988;RSQ=0.8067;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62532757 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.660;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6701;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62532836 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.978;LDAF=0.0696;AVGPOST=0.9949;RSQ=0.9731;ERATE=0.0006;THETA=0.0004;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 62532860 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.982;LDAF=0.1180;AVGPOST=0.9963;RSQ=0.9879;ERATE=0.0005;THETA=0.0003;AC=257;AN=2184 GT:DS:GL:BD 0.11767399 0 1 62532879 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.640;LDAF=0.0097;AVGPOST=0.9947;RSQ=0.7704;ERATE=0.0006;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62533020 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.723;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6614;ERATE=0.0003;THETA=0.0023;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62533090 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0636;AVGPOST=0.9993;RSQ=0.9951;ERATE=0.0003;THETA=0.0003;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 62533101 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62533213 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9787;ERATE=0.0003;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62533396 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62533454 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0138;AVGPOST=0.9995;RSQ=0.9823;ERATE=0.0004;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62533499 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0342;AVGPOST=0.9986;RSQ=0.9856;ERATE=0.0004;THETA=0.0004;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 62533507 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0065;AVGPOST=0.9996;RSQ=0.9707;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62533561 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0308;AVGPOST=0.9979;RSQ=0.9746;ERATE=0.0004;THETA=0.0008;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 62533565 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0017;AVGPOST=0.9977;RSQ=0.5214;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62533809 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62534067 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0031;AVGPOST=0.9972;RSQ=0.6544;ERATE=0.0005;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62534087 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7136;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62534225 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0867;AVGPOST=0.9993;RSQ=0.9965;ERATE=0.0003;THETA=0.0003;AC=189;AN=2184 GT:DS:GL:BD 0.08653846 0 1 62534291 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6419;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62534547 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0498;AVGPOST=0.9998;RSQ=0.9983;ERATE=0.0003;THETA=0.0003;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 62534562 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6944;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62534644 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.781;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5407;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62534654 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6623;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62534854 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2264;AVGPOST=0.9977;RSQ=0.9954;ERATE=0.0003;THETA=0.0006;AC=494;AN=2184 GT:DS:GL:BD 0.22619048 0 1 62534938 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.3842;AVGPOST=0.9978;RSQ=0.9966;ERATE=0.0004;THETA=0.0007;AC=839;AN=2184 GT:DS:GL:BD 0.38415751 0 1 62534954 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.0660;AVGPOST=0.9990;RSQ=0.9949;ERATE=0.0003;THETA=0.0013;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 62534984 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.710;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5172;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62534993 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7153;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62535039 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0043;AVGPOST=0.9988;RSQ=0.8821;ERATE=0.0005;THETA=0.0021;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62535221 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0022;AVGPOST=0.9995;RSQ=0.9078;ERATE=0.0003;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62535223 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0121;AVGPOST=0.9987;RSQ=0.9616;ERATE=0.0003;THETA=0.0007;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 62535302 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6666;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62535563 rs113472531 T TA 27741 PASS INDEL;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.3199;AVGPOST=0.9953;RSQ=0.9917;ERATE=0.0006;THETA=0.0046;AC=696;AN=2184 GT:DS:GL:BD 0.31868133 0 1 62535721 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1264;AVGPOST=0.9983;RSQ=0.9948;ERATE=0.0004;THETA=0.0053;AC=276;AN=2184 GT:DS:GL:BD 0.12637363 0 1 62535796 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.963;LDAF=0.0194;AVGPOST=0.9984;RSQ=0.9718;ERATE=0.0003;THETA=0.0006;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 62535797 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.964;LDAF=0.0194;AVGPOST=0.9985;RSQ=0.9738;ERATE=0.0003;THETA=0.0068;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 62535904 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0077;AVGPOST=0.9985;RSQ=0.9306;ERATE=0.0003;THETA=0.0013;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62535968 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.648;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5239;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62536076 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5707;ERATE=0.0004;THETA=0.0059;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62536094 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0429;AVGPOST=0.9973;RSQ=0.9776;ERATE=0.0003;THETA=0.0013;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 62536226 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0052;AVGPOST=0.9997;RSQ=0.9750;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62536268 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0137;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62536298 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7169;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62536388 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0277;AVGPOST=0.9978;RSQ=0.9737;ERATE=0.0003;THETA=0.0003;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 62536427 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0088;AVGPOST=0.9992;RSQ=0.9657;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62536469 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.979;LDAF=0.3033;AVGPOST=0.9873;RSQ=0.9781;ERATE=0.0040;THETA=0.0014;AC=655;AN=2184 GT:DS:GL:BD 0.29990843 0 1 62536471 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0106;AVGPOST=0.9996;RSQ=0.9833;ERATE=0.0003;THETA=0.0081;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 62536555 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62536619 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.2669;AVGPOST=0.9972;RSQ=0.9948;ERATE=0.0006;THETA=0.0043;AC=581;AN=2184 GT:DS:GL:BD 0.26602563 0 1 62536633 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9997;RSQ=0.9688;ERATE=0.0003;THETA=0.0012;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62536683 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3044;AVGPOST=0.9954;RSQ=0.9924;ERATE=0.0004;THETA=0.0098;AC=664;AN=2184 GT:DS:GL:BD 0.30402932 0 1 62536690 . TG T 51 PASS INDEL;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5800;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62536779 . T TA 1693 PASS INDEL;BAVGPOST=0.997;BRSQ=0.921;LDAF=0.0114;AVGPOST=0.9970;RSQ=0.9005;ERATE=0.0006;THETA=0.0013;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62536846 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0042;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62536873 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0026;AVGPOST=0.9981;RSQ=0.7309;ERATE=0.0004;THETA=0.0075;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62536950 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.710;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7871;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62537031 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0039;AVGPOST=0.9986;RSQ=0.8465;ERATE=0.0004;THETA=0.0069;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62537265 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2447;AVGPOST=0.9968;RSQ=0.9934;ERATE=0.0005;THETA=0.0008;AC=532;AN=2184 GT:DS:GL:BD 0.24358974 0 1 62537291 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0072;AVGPOST=0.9992;RSQ=0.9509;ERATE=0.0004;THETA=0.0012;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62537306 rs113091204 C CA 1547 PASS INDEL;BAVGPOST=0.998;BRSQ=0.912;LDAF=0.0107;AVGPOST=0.9986;RSQ=0.9432;ERATE=0.0004;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62537374 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0026;AVGPOST=0.9976;RSQ=0.6088;ERATE=0.0006;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62537377 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.693;LDAF=0.0037;AVGPOST=0.9961;RSQ=0.5554;ERATE=0.0006;THETA=0.0035;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62537436 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.634;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6681;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62537447 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.860;LDAF=0.0086;AVGPOST=0.9978;RSQ=0.8915;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62537602 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62537618 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62537650 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0162;AVGPOST=0.9997;RSQ=0.9914;ERATE=0.0003;THETA=0.0019;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62537672 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7440;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62537800 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9996;RSQ=0.9261;ERATE=0.0003;THETA=0.0019;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62537906 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.748;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62537958 . G GT 204 PASS INDEL;BAVGPOST=0.988;BRSQ=0.529;LDAF=0.0207;AVGPOST=0.9770;RSQ=0.5629;ERATE=0.0050;THETA=0.0013;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 62538207 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0165;AVGPOST=0.9997;RSQ=0.9927;ERATE=0.0003;THETA=0.0009;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62538252 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.2414;AVGPOST=0.9958;RSQ=0.9917;ERATE=0.0004;THETA=0.0009;AC=526;AN=2184 GT:DS:GL:BD 0.24084249 0 1 62538372 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.991;LDAF=0.4854;AVGPOST=0.9911;RSQ=0.9880;ERATE=0.0006;THETA=0.0006;AC=1063;AN=2184 GT:DS:GL:BD 0.48672161 0 1 62538386 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.704;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.6262;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62538424 . A AAG 648 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0043;AVGPOST=0.9987;RSQ=0.8745;ERATE=0.0004;THETA=0.0014;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62538434 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.905;LDAF=0.0837;AVGPOST=0.9797;RSQ=0.9007;ERATE=0.0053;THETA=0.0004;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 62538434 rs112445360 A AG 4819 PASS INDEL;BAVGPOST=0.985;BRSQ=0.928;LDAF=0.0893;AVGPOST=0.9873;RSQ=0.9475;ERATE=0.0008;THETA=0.0002;AC=188;AN=2184 GT:DS:GL:BD 0.08608059 0 1 62538465 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0167;AVGPOST=0.9994;RSQ=0.9836;ERATE=0.0004;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62538593 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0030;AVGPOST=0.9990;RSQ=0.8712;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62538648 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8789;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62538659 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0271;AVGPOST=0.9994;RSQ=0.9919;ERATE=0.0003;THETA=0.0004;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 62538687 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9130;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62538763 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62538805 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5869;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62538809 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0093;AVGPOST=0.9991;RSQ=0.9603;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62538813 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.816;LDAF=0.0031;AVGPOST=0.9991;RSQ=0.8953;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62538853 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.809;LDAF=0.0020;AVGPOST=0.9985;RSQ=0.7034;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62538944 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0108;AVGPOST=0.9994;RSQ=0.9776;ERATE=0.0003;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 62538950 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.415;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8497;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62538974 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62539058 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62539326 . A AAATG 664 PASS INDEL;BAVGPOST=0.995;BRSQ=0.905;LDAF=0.0204;AVGPOST=0.9982;RSQ=0.9603;ERATE=0.0004;THETA=0.0029;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 62539329 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0127;AVGPOST=0.9974;RSQ=0.9200;ERATE=0.0004;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 62539335 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0042;AVGPOST=0.9996;RSQ=0.9589;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62539433 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7544;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62539495 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6983;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62539579 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.768;LDAF=0.0206;AVGPOST=0.9909;RSQ=0.8287;ERATE=0.0006;THETA=0.0008;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 62539613 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6849;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62539914 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.941;LDAF=0.0365;AVGPOST=0.9964;RSQ=0.9609;ERATE=0.0004;THETA=0.0006;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 62540042 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.976;LDAF=0.4644;AVGPOST=0.9822;RSQ=0.9766;ERATE=0.0031;THETA=0.0002;AC=1019;AN=2184 GT:DS:GL:BD 0.46657509 0 1 62540043 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.798;LDAF=0.0175;AVGPOST=0.9904;RSQ=0.7884;ERATE=0.0005;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62540129 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0032;AVGPOST=0.9971;RSQ=0.6289;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62540373 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0114;AVGPOST=0.9986;RSQ=0.9503;ERATE=0.0004;THETA=0.0018;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62540617 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62540626 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.2282;AVGPOST=0.9939;RSQ=0.9879;ERATE=0.0009;THETA=0.0003;AC=498;AN=2184 GT:DS:GL:BD 0.22802198 0 1 62540740 . TC T 470 PASS INDEL;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9150;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62540955 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4776;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62540961 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.816;LDAF=0.0055;AVGPOST=0.9981;RSQ=0.8726;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62540990 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6406;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62541298 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.694;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6018;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62541398 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7930;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62541407 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0131;AVGPOST=0.9973;RSQ=0.9229;ERATE=0.0005;THETA=0.0008;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62541417 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.823;LDAF=0.0060;AVGPOST=0.9972;RSQ=0.8161;ERATE=0.0005;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62541456 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.598;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.3983;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62541770 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.965;LDAF=0.0341;AVGPOST=0.9965;RSQ=0.9681;ERATE=0.0004;THETA=0.0004;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 62542029 rs36057996 CAG C 40631 PASS INDEL;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2885;AVGPOST=0.9973;RSQ=0.9951;ERATE=0.0005;THETA=0.0015;AC=628;AN=2184 GT:DS:GL:BD 0.28754580 0 1 62542091 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62542095 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1188;AVGPOST=0.9969;RSQ=0.9901;ERATE=0.0006;THETA=0.0004;AC=258;AN=2184 GT:DS:GL:BD 0.11813187 0 1 62542162 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0023;AVGPOST=0.9973;RSQ=0.5715;ERATE=0.0003;THETA=0.0023;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62542448 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62542473 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9812;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62542528 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62542581 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5414;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62542582 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8604;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62542602 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7163;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62542692 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0005;AVGPOST=0.9993;RSQ=0.4221;ERATE=0.0003;THETA=0.0007;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62542717 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3117;AVGPOST=0.9979;RSQ=0.9962;ERATE=0.0003;THETA=0.0006;AC=679;AN=2184 GT:DS:GL:BD 0.31089744 0 1 62542808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0014;AVGPOST=0.9994;RSQ=0.8295;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62542823 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62542885 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0096;AVGPOST=0.9997;RSQ=0.9853;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62542938 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7400;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62543159 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0311;AVGPOST=0.9989;RSQ=0.9853;ERATE=0.0003;THETA=0.0006;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 62543223 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.680;LDAF=0.0034;AVGPOST=0.9982;RSQ=0.7775;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62543227 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.959;LDAF=0.0032;AVGPOST=0.9992;RSQ=0.9023;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62543255 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4713;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62543360 . A AAAAG 10458 PASS INDEL;BAVGPOST=0.934;BRSQ=0.801;LDAF=0.1857;AVGPOST=0.9161;RSQ=0.8105;ERATE=0.0105;THETA=0.0003;AC=380;AN=2184 GT:DS:GL:BD 0.17399268 0 1 62543566 . GA G 459 PASS INDEL;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0032;AVGPOST=0.9996;RSQ=0.9404;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62543696 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6336;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62543766 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62543836 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9786;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62543976 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0096;AVGPOST=0.9998;RSQ=0.9888;ERATE=0.0003;THETA=0.0036;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62543999 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0282;AVGPOST=0.9966;RSQ=0.9530;ERATE=0.0003;THETA=0.0006;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 62544112 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.646;LDAF=0.0137;AVGPOST=0.9944;RSQ=0.8455;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 62544490 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7445;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62544503 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.432;LDAF=0.0025;AVGPOST=0.9972;RSQ=0.5296;ERATE=0.0006;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62544549 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.724;LDAF=0.0023;AVGPOST=0.9972;RSQ=0.4927;ERATE=0.0008;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62544564 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6762;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62544583 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=0.9996;RSQ=0.9807;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62544813 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0518;AVGPOST=0.9996;RSQ=0.9963;ERATE=0.0003;THETA=0.0008;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 62544894 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0060;AVGPOST=0.9995;RSQ=0.9664;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62545085 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2381;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=519;AN=2184 GT:DS:GL:BD 0.23763736 0 1 62545223 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0045;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62545246 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0297;AVGPOST=1.0000;RSQ=0.9993;ERATE=0.0003;THETA=0.0044;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 62545348 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62545404 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0756;AVGPOST=0.9992;RSQ=0.9962;ERATE=0.0003;THETA=0.0004;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 62545568 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.917;LDAF=0.0162;AVGPOST=0.9973;RSQ=0.9371;ERATE=0.0005;THETA=0.0010;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62545592 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.955;LDAF=0.0706;AVGPOST=0.9971;RSQ=0.9855;ERATE=0.0006;THETA=0.0004;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 62545688 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0256;AVGPOST=0.9971;RSQ=0.9472;ERATE=0.0007;THETA=0.0010;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 62545763 . ATTATTC A 2813 PASS INDEL;BAVGPOST=0.996;BRSQ=0.928;LDAF=0.0240;AVGPOST=0.9984;RSQ=0.9725;ERATE=0.0005;THETA=0.0008;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 62545838 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0082;AVGPOST=0.9991;RSQ=0.9600;ERATE=0.0003;THETA=0.0010;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62545859 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6168;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62545902 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0152;AVGPOST=0.9997;RSQ=0.9917;ERATE=0.0003;THETA=0.0012;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62546034 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.815;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5842;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62546104 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.554;LDAF=0.0023;AVGPOST=0.9986;RSQ=0.7598;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62546120 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0101;AVGPOST=0.9986;RSQ=0.9358;ERATE=0.0004;THETA=0.0009;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62546121 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.617;LDAF=0.0044;AVGPOST=0.9962;RSQ=0.6511;ERATE=0.0007;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62546165 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.478;LDAF=0.0114;AVGPOST=0.9939;RSQ=0.7867;ERATE=0.0009;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62546177 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.938;LDAF=0.2123;AVGPOST=0.9861;RSQ=0.9701;ERATE=0.0004;THETA=0.0009;AC=465;AN=2184 GT:DS:GL:BD 0.21291208 0 1 62546361 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0243;AVGPOST=0.9996;RSQ=0.9930;ERATE=0.0003;THETA=0.0008;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 62546439 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8544;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62546454 rs11278228 CTTCATAAAG C 21470 PASS INDEL;BAVGPOST=0.990;BRSQ=0.963;LDAF=0.1043;AVGPOST=0.9939;RSQ=0.9755;ERATE=0.0004;THETA=0.0007;AC=227;AN=2184 GT:DS:GL:BD 0.10393773 0 1 62546472 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0048;AVGPOST=0.9994;RSQ=0.9433;ERATE=0.0003;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62546539 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4217;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62546596 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0026;AVGPOST=0.9985;RSQ=0.7460;ERATE=0.0006;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62546628 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4155;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62546633 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.610;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62546676 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0089;AVGPOST=0.9992;RSQ=0.9569;ERATE=0.0005;THETA=0.0013;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62546683 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.942;LDAF=0.0282;AVGPOST=0.9963;RSQ=0.9553;ERATE=0.0006;THETA=0.0005;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 62546694 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0096;AVGPOST=0.9994;RSQ=0.9695;ERATE=0.0003;THETA=0.0011;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62546901 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62546949 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8344;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62547200 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.840;LDAF=0.0075;AVGPOST=0.9979;RSQ=0.8682;ERATE=0.0008;THETA=0.0017;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62547328 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0035;AVGPOST=0.9990;RSQ=0.8646;ERATE=0.0004;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62547419 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.937;LDAF=0.0096;AVGPOST=0.9961;RSQ=0.8626;ERATE=0.0003;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62547502 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.803;LDAF=0.0125;AVGPOST=0.9976;RSQ=0.9253;ERATE=0.0007;THETA=0.0026;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 62547535 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0127;AVGPOST=0.9977;RSQ=0.9321;ERATE=0.0005;THETA=0.0059;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 62547608 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0354;AVGPOST=0.9993;RSQ=0.9909;ERATE=0.0003;THETA=0.0007;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 62547777 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.733;LDAF=0.0032;AVGPOST=0.9991;RSQ=0.8713;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62547876 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8176;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62547916 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0066;AVGPOST=0.9994;RSQ=0.9601;ERATE=0.0003;THETA=0.0012;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62547985 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7718;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62547986 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0034;AVGPOST=0.9988;RSQ=0.8551;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62548065 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0130;AVGPOST=0.9994;RSQ=0.9783;ERATE=0.0004;THETA=0.0008;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62548182 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7496;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62548311 . TACTC T 275 PASS INDEL;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.7592;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62548387 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7307;ERATE=0.0005;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62548646 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0065;AVGPOST=0.9998;RSQ=0.9864;ERATE=0.0003;THETA=0.0010;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62548653 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0088;AVGPOST=0.9995;RSQ=0.9749;ERATE=0.0003;THETA=0.0010;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62548683 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0013;AVGPOST=1.0000;RSQ=0.9839;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62548706 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.927;LDAF=0.0141;AVGPOST=0.9987;RSQ=0.9644;ERATE=0.0008;THETA=0.0012;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62548762 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8864;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62548795 . CGTT C 80 PASS INDEL;BAVGPOST=0.999;BRSQ=0.720;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.5229;ERATE=0.0006;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62548821 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7212;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62549071 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=0.9998;RSQ=0.9866;ERATE=0.0003;THETA=0.0010;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62549081 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0172;AVGPOST=0.9994;RSQ=0.9836;ERATE=0.0004;THETA=0.0011;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 62549146 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0652;AVGPOST=0.9994;RSQ=0.9957;ERATE=0.0003;THETA=0.0009;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 62549176 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0031;AVGPOST=0.9994;RSQ=0.9054;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62549397 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.742;LDAF=0.0019;AVGPOST=0.9973;RSQ=0.4706;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62549440 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0066;AVGPOST=0.9994;RSQ=0.9542;ERATE=0.0004;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62549466 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.649;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4609;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62549513 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62549658 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0305;AVGPOST=0.9992;RSQ=0.9884;ERATE=0.0003;THETA=0.0009;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 62549844 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.709;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.3784;ERATE=0.0007;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62549883 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0019;AVGPOST=0.9970;RSQ=0.4112;ERATE=0.0007;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62550050 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.8063;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62550057 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0169;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0013;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 62550098 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0362;AVGPOST=0.9998;RSQ=0.9977;ERATE=0.0004;THETA=0.0008;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 62550124 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9524;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62550173 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0132;AVGPOST=1.0000;RSQ=0.9985;ERATE=0.0003;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 62550175 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62550230 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0133;AVGPOST=1.0000;RSQ=0.9985;ERATE=0.0003;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 62550238 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62550274 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62550347 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62550422 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0068;AVGPOST=1.0000;RSQ=0.9968;ERATE=0.0003;THETA=0.0013;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62550427 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0585;AVGPOST=1.0000;RSQ=0.9996;ERATE=0.0003;THETA=0.0008;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 62550453 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62550584 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0171;AVGPOST=0.9995;RSQ=0.9878;ERATE=0.0003;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 62550653 . GC G 69 PASS INDEL;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62550707 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0068;AVGPOST=0.9990;RSQ=0.9278;ERATE=0.0003;THETA=0.0009;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62550880 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0118;AVGPOST=0.9983;RSQ=0.9510;ERATE=0.0004;THETA=0.0009;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62550991 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0102;AVGPOST=0.9995;RSQ=0.9799;ERATE=0.0003;THETA=0.0012;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62551025 . TA T 665 PASS INDEL;BAVGPOST=0.975;BRSQ=0.637;LDAF=0.0569;AVGPOST=0.9447;RSQ=0.5987;ERATE=0.0106;THETA=0.0005;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 62551211 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0371;AVGPOST=0.9997;RSQ=0.9958;ERATE=0.0004;THETA=0.0011;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 62551252 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0068;AVGPOST=0.9995;RSQ=0.9659;ERATE=0.0003;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62551293 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.737;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6710;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62551320 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.644;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.5649;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62551339 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0048;AVGPOST=0.9947;RSQ=0.6121;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62551581 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0004;AVGPOST=0.9994;RSQ=0.4601;ERATE=0.0003;THETA=0.0039;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62551723 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.763;LDAF=0.0056;AVGPOST=0.9960;RSQ=0.7310;ERATE=0.0005;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62551737 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.947;LDAF=0.0372;AVGPOST=0.9984;RSQ=0.9800;ERATE=0.0007;THETA=0.0006;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 62551881 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0874;AVGPOST=0.9983;RSQ=0.9920;ERATE=0.0003;THETA=0.0006;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 62551916 . ATG A 32554 PASS INDEL;BAVGPOST=0.998;BRSQ=0.123;LDAF=0.9955;AVGPOST=0.9939;RSQ=0.4179;ERATE=0.0013;THETA=0.0006;AC=2179;AN=2184 GT:DS:GL:BD 0.99771065 1 1 62551959 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0231;AVGPOST=0.9993;RSQ=0.9869;ERATE=0.0003;THETA=0.0013;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 62551984 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0201;AVGPOST=0.9999;RSQ=0.9978;ERATE=0.0003;THETA=0.0005;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 62552022 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62552105 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.901;LDAF=0.0072;AVGPOST=0.9976;RSQ=0.8686;ERATE=0.0004;THETA=0.0009;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62552129 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62552158 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0420;AVGPOST=0.9996;RSQ=0.9954;ERATE=0.0003;THETA=0.0010;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 62552261 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.839;LDAF=0.0087;AVGPOST=0.9988;RSQ=0.9374;ERATE=0.0004;THETA=0.0013;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62552269 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0863;AVGPOST=0.9975;RSQ=0.9879;ERATE=0.0004;THETA=0.0009;AC=188;AN=2184 GT:DS:GL:BD 0.08608059 0 1 62552321 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.967;LDAF=0.0382;AVGPOST=0.9990;RSQ=0.9907;ERATE=0.0003;THETA=0.0008;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 62552366 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5543;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62552459 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0848;AVGPOST=0.9987;RSQ=0.9926;ERATE=0.0003;THETA=0.0008;AC=186;AN=2184 GT:DS:GL:BD 0.08516484 0 1 62552484 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0848;AVGPOST=0.9991;RSQ=0.9953;ERATE=0.0003;THETA=0.0015;AC=186;AN=2184 GT:DS:GL:BD 0.08516484 0 1 62552535 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0309;AVGPOST=0.9993;RSQ=0.9909;ERATE=0.0003;THETA=0.0004;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 62552570 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.544;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5722;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62552589 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6371;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62552597 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.547;LDAF=0.0053;AVGPOST=0.9948;RSQ=0.6259;ERATE=0.0009;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62552665 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6140;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62552724 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0155;AVGPOST=0.9984;RSQ=0.9629;ERATE=0.0003;THETA=0.0037;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62552755 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.824;LDAF=0.0182;AVGPOST=0.9923;RSQ=0.8372;ERATE=0.0007;THETA=0.0011;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62552780 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4651;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62552822 . GAGA G 1804 PASS INDEL;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0128;AVGPOST=0.9993;RSQ=0.9753;ERATE=0.0003;THETA=0.0013;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62552864 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=0.9991;RSQ=0.9433;ERATE=0.0005;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62553096 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0173;AVGPOST=0.9989;RSQ=0.9714;ERATE=0.0004;THETA=0.0037;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 62553134 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.8896;ERATE=0.0003;THETA=0.0014;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62553324 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62553359 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.616;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62553526 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0015;AVGPOST=0.9991;RSQ=0.8024;ERATE=0.0003;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62553543 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6495;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62553641 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.551;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6132;ERATE=0.0006;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62553709 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.971;LDAF=0.1763;AVGPOST=0.9905;RSQ=0.9754;ERATE=0.0005;THETA=0.0009;AC=382;AN=2184 GT:DS:GL:BD 0.17490843 0 1 62553804 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.637;LDAF=0.0108;AVGPOST=0.9929;RSQ=0.7528;ERATE=0.0006;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62553892 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0097;AVGPOST=0.9997;RSQ=0.9870;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62553923 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7901;ERATE=0.0003;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62553934 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62554002 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0040;AVGPOST=0.9995;RSQ=0.9473;ERATE=0.0003;THETA=0.0020;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62554080 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6589;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62554226 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62554383 . ACT A 51 PASS INDEL;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0035;AVGPOST=0.9970;RSQ=0.6839;ERATE=0.0005;THETA=0.0012;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62554455 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.521;LDAF=0.0054;AVGPOST=0.9927;RSQ=0.4677;ERATE=0.0013;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62554517 . C CAT 1036 PASS INDEL;BAVGPOST=0.988;BRSQ=0.835;LDAF=0.0439;AVGPOST=0.9884;RSQ=0.8830;ERATE=0.0014;THETA=0.0015;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 62554588 . T TG 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.740;LDAF=0.0017;AVGPOST=0.9979;RSQ=0.5154;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62554610 . CGTGT C 727 PASS INDEL;BAVGPOST=0.996;BRSQ=0.717;LDAF=0.0086;AVGPOST=0.9928;RSQ=0.6655;ERATE=0.0006;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62554734 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0923;AVGPOST=0.9969;RSQ=0.9863;ERATE=0.0004;THETA=0.0005;AC=200;AN=2184 GT:DS:GL:BD 0.09157509 0 1 62554784 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62554896 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0225;AVGPOST=0.9999;RSQ=0.9970;ERATE=0.0003;THETA=0.0008;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 62554931 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8185;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62554995 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62555007 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.9014;ERATE=0.0004;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62555076 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0203;AVGPOST=0.9995;RSQ=0.9867;ERATE=0.0004;THETA=0.0007;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 62555219 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0860;AVGPOST=0.9998;RSQ=0.9986;ERATE=0.0003;THETA=0.0007;AC=188;AN=2184 GT:DS:GL:BD 0.08608059 0 1 62555255 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62555481 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0860;AVGPOST=0.9993;RSQ=0.9959;ERATE=0.0004;THETA=0.0008;AC=188;AN=2184 GT:DS:GL:BD 0.08608059 0 1 62555524 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6941;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62555569 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8664;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62555612 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7868;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62555619 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2249;AVGPOST=0.9982;RSQ=0.9959;ERATE=0.0003;THETA=0.0006;AC=491;AN=2184 GT:DS:GL:BD 0.22481684 0 1 62555762 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0314;AVGPOST=0.9988;RSQ=0.9838;ERATE=0.0004;THETA=0.0006;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 62555823 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0426;AVGPOST=0.9998;RSQ=0.9974;ERATE=0.0003;THETA=0.0006;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 62555873 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.844;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62555891 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62556020 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6133;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62556028 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8602;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62556048 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.847;LDAF=0.0040;AVGPOST=0.9984;RSQ=0.8540;ERATE=0.0004;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62556063 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62556123 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6761;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62556237 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1229;AVGPOST=0.9967;RSQ=0.9895;ERATE=0.0005;THETA=0.0004;AC=269;AN=2184 GT:DS:GL:BD 0.12316850 0 1 62556255 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0843;AVGPOST=0.9985;RSQ=0.9927;ERATE=0.0004;THETA=0.0004;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 62556287 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62556351 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.774;LDAF=0.0018;AVGPOST=0.9995;RSQ=0.8896;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62556504 . T TC 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7425;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62556537 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62556556 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6901;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62556579 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1231;AVGPOST=0.9976;RSQ=0.9924;ERATE=0.0004;THETA=0.0013;AC=269;AN=2184 GT:DS:GL:BD 0.12316850 0 1 62556614 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62556683 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0427;AVGPOST=0.9996;RSQ=0.9954;ERATE=0.0003;THETA=0.0009;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 62556708 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0426;AVGPOST=0.9999;RSQ=0.9984;ERATE=0.0003;THETA=0.0008;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 62556723 . GA G 52 PASS INDEL;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6905;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62556897 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.931;LDAF=0.0184;AVGPOST=0.9974;RSQ=0.9460;ERATE=0.0006;THETA=0.0011;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62557036 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0076;AVGPOST=0.9990;RSQ=0.9422;ERATE=0.0004;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62557062 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0213;AVGPOST=0.9984;RSQ=0.9693;ERATE=0.0004;THETA=0.0007;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 62557132 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0864;AVGPOST=0.9990;RSQ=0.9957;ERATE=0.0003;THETA=0.0007;AC=188;AN=2184 GT:DS:GL:BD 0.08608059 0 1 62557429 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0114;AVGPOST=0.9989;RSQ=0.9578;ERATE=0.0004;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62557493 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.967;LDAF=0.0633;AVGPOST=0.9865;RSQ=0.9228;ERATE=0.0023;THETA=0.0009;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 62557502 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.967;LDAF=0.0875;AVGPOST=0.9961;RSQ=0.9809;ERATE=0.0004;THETA=0.0014;AC=188;AN=2184 GT:DS:GL:BD 0.08608059 0 1 62557531 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.630;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8116;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62557605 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.979;LDAF=0.0890;AVGPOST=0.9941;RSQ=0.9733;ERATE=0.0006;THETA=0.0006;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 62557653 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0593;AVGPOST=0.9980;RSQ=0.9856;ERATE=0.0004;THETA=0.0006;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 62557688 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0113;AVGPOST=0.9990;RSQ=0.9610;ERATE=0.0003;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62557892 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.653;LDAF=0.0032;AVGPOST=0.9968;RSQ=0.6333;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62557911 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0047;AVGPOST=0.9984;RSQ=0.8540;ERATE=0.0005;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62557976 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0880;AVGPOST=0.9949;RSQ=0.9756;ERATE=0.0007;THETA=0.0004;AC=189;AN=2184 GT:DS:GL:BD 0.08653846 0 1 62558008 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0099;AVGPOST=0.9991;RSQ=0.9632;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62558022 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.983;LDAF=0.0883;AVGPOST=0.9975;RSQ=0.9875;ERATE=0.0005;THETA=0.0010;AC=191;AN=2184 GT:DS:GL:BD 0.08745421 0 1 62558047 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.730;LDAF=0.0067;AVGPOST=0.9971;RSQ=0.8208;ERATE=0.0005;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62558291 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.585;LDAF=0.0088;AVGPOST=0.9930;RSQ=0.7095;ERATE=0.0007;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62558313 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0206;AVGPOST=0.9989;RSQ=0.9726;ERATE=0.0005;THETA=0.0010;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 62558395 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0343;AVGPOST=0.9924;RSQ=0.9096;ERATE=0.0003;THETA=0.0006;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 62558398 . T TTTTATTTATTTATTTA 4459 PASS INDEL;BAVGPOST=0.963;BRSQ=0.717;LDAF=0.0806;AVGPOST=0.9879;RSQ=0.9289;ERATE=0.0015;THETA=0.0011;AC=179;AN=2184 GT:DS:GL:BD 0.08195971 0 1 62558414 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.804;LDAF=0.0133;AVGPOST=0.9925;RSQ=0.7760;ERATE=0.0008;THETA=0.0011;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62558418 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.840;LDAF=0.0218;AVGPOST=0.9859;RSQ=0.7452;ERATE=0.0017;THETA=0.0009;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 62558422 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.798;LDAF=0.0751;AVGPOST=0.9859;RSQ=0.9198;ERATE=0.0008;THETA=0.0003;AC=177;AN=2184 GT:DS:GL:BD 0.08104396 0 1 62558425 . TA T 33 PASS INDEL;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0069;AVGPOST=0.9967;RSQ=0.7902;ERATE=0.0004;THETA=0.0016;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62558426 . A ATTTTTTT 905 PASS INDEL;BAVGPOST=0.991;BRSQ=0.744;LDAF=0.0211;AVGPOST=0.9867;RSQ=0.7548;ERATE=0.0011;THETA=0.0005;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 62558445 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.741;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4508;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62558479 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.701;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62558563 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0117;AVGPOST=0.9973;RSQ=0.9162;ERATE=0.0005;THETA=0.0009;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 62558604 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0254;AVGPOST=0.9960;RSQ=0.9427;ERATE=0.0004;THETA=0.0008;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 62558661 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0120;AVGPOST=0.9978;RSQ=0.9232;ERATE=0.0004;THETA=0.0007;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62558831 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6495;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62559012 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0021;AVGPOST=0.9991;RSQ=0.8085;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62559013 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0024;AVGPOST=0.9987;RSQ=0.7478;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62559110 . CT C 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8016;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62559197 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.774;LDAF=0.0025;AVGPOST=0.9980;RSQ=0.7360;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62559375 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.599;LDAF=0.0023;AVGPOST=0.9992;RSQ=0.8414;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62559472 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.640;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5425;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62559553 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0104;AVGPOST=0.9989;RSQ=0.9554;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62559573 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0022;AVGPOST=0.9973;RSQ=0.5491;ERATE=0.0004;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62559665 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6772;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62559925 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0069;AVGPOST=0.9991;RSQ=0.9562;ERATE=0.0003;THETA=0.0009;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62559946 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.811;LDAF=0.0059;AVGPOST=0.9968;RSQ=0.7766;ERATE=0.0005;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62559969 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0032;AVGPOST=0.9981;RSQ=0.7820;ERATE=0.0004;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62559982 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.2168;AVGPOST=0.9833;RSQ=0.9638;ERATE=0.0033;THETA=0.0006;AC=471;AN=2184 GT:DS:GL:BD 0.21565934 0 1 62560023 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0932;AVGPOST=0.9966;RSQ=0.9861;ERATE=0.0004;THETA=0.0006;AC=203;AN=2184 GT:DS:GL:BD 0.09294872 0 1 62560039 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0096;AVGPOST=0.9961;RSQ=0.8571;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62560053 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5882;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62560517 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0206;AVGPOST=0.9998;RSQ=0.9946;ERATE=0.0003;THETA=0.0005;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 62560542 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5598;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62560601 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0153;AVGPOST=0.9978;RSQ=0.9476;ERATE=0.0003;THETA=0.0016;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62560620 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.704;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4212;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62560736 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6721;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62560777 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7546;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62560847 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7144;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62560865 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0005;AVGPOST=0.9992;RSQ=0.3444;ERATE=0.0003;THETA=0.0010;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62560928 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1901;AVGPOST=0.9970;RSQ=0.9922;ERATE=0.0005;THETA=0.0007;AC=414;AN=2184 GT:DS:GL:BD 0.18956044 0 1 62560937 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62561095 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0203;AVGPOST=0.9996;RSQ=0.9911;ERATE=0.0003;THETA=0.0006;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 62561350 . G GT 66 PASS INDEL;BAVGPOST=0.986;BRSQ=0.504;LDAF=0.0275;AVGPOST=0.9689;RSQ=0.5303;ERATE=0.0087;THETA=0.0006;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 62561419 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62561457 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0202;AVGPOST=0.9999;RSQ=0.9979;ERATE=0.0003;THETA=0.0004;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 62561677 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0042;AVGPOST=0.9988;RSQ=0.8951;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62561750 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0168;AVGPOST=0.9993;RSQ=0.9870;ERATE=0.0003;THETA=0.0010;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62561775 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0021;AVGPOST=0.9983;RSQ=0.7081;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62561779 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9385;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62561804 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.956;LDAF=0.0212;AVGPOST=0.9971;RSQ=0.9450;ERATE=0.0003;THETA=0.0008;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 62561827 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9743;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62562129 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0104;AVGPOST=0.9995;RSQ=0.9805;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 62562191 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.830;LDAF=0.0049;AVGPOST=0.9992;RSQ=0.9280;ERATE=0.0003;THETA=0.0012;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62562368 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0133;AVGPOST=0.9923;RSQ=0.7919;ERATE=0.0007;THETA=0.0012;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 62562380 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.544;LDAF=0.0025;AVGPOST=0.9965;RSQ=0.4634;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62562382 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.870;LDAF=0.0300;AVGPOST=0.9899;RSQ=0.8860;ERATE=0.0005;THETA=0.0010;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 62562439 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.734;LDAF=0.0042;AVGPOST=0.9958;RSQ=0.6227;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62562491 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0025;AVGPOST=0.9976;RSQ=0.6392;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62562578 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.987;LDAF=0.4767;AVGPOST=0.9854;RSQ=0.9801;ERATE=0.0009;THETA=0.0007;AC=1042;AN=2184 GT:DS:GL:BD 0.47710621 0 1 62562585 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8194;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62562604 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9358;ERATE=0.0003;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62562606 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.936;LDAF=0.0356;AVGPOST=0.9954;RSQ=0.9428;ERATE=0.0005;THETA=0.0006;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 62562618 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8881;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62562644 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62562767 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6939;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62562777 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5643;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62562927 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4938;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62563103 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=0.9999;RSQ=0.9945;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62563390 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6964;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62563425 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7298;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62563554 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.2359;AVGPOST=0.9986;RSQ=0.9968;ERATE=0.0003;THETA=0.0007;AC=516;AN=2184 GT:DS:GL:BD 0.23626374 0 1 62563568 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2306;AVGPOST=0.9957;RSQ=0.9910;ERATE=0.0014;THETA=0.0004;AC=505;AN=2184 GT:DS:GL:BD 0.23122710 0 1 62563590 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0048;AVGPOST=0.9996;RSQ=0.9592;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62563643 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8825;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62563756 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0263;AVGPOST=0.9984;RSQ=0.9741;ERATE=0.0006;THETA=0.0003;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 62563892 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2502;AVGPOST=0.9966;RSQ=0.9935;ERATE=0.0006;THETA=0.0006;AC=547;AN=2184 GT:DS:GL:BD 0.25045788 0 1 62564055 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0176;AVGPOST=0.9989;RSQ=0.9802;ERATE=0.0003;THETA=0.0040;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62564087 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.760;LDAF=0.0027;AVGPOST=0.9978;RSQ=0.6506;ERATE=0.0007;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62564248 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0030;AVGPOST=0.9974;RSQ=0.6440;ERATE=0.0007;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62564260 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.981;LDAF=0.2246;AVGPOST=0.9924;RSQ=0.9825;ERATE=0.0024;THETA=0.0005;AC=492;AN=2184 GT:DS:GL:BD 0.22527473 0 1 62564335 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0071;AVGPOST=0.9994;RSQ=0.9590;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62564432 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5747;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62564457 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0371;AVGPOST=0.9982;RSQ=0.9814;ERATE=0.0005;THETA=0.0008;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 62564534 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.791;LDAF=0.0046;AVGPOST=0.9981;RSQ=0.8301;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62564557 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.6694;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62564566 . T TC 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0033;AVGPOST=0.9967;RSQ=0.5724;ERATE=0.0008;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62564635 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0031;AVGPOST=0.9981;RSQ=0.7609;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62564704 . TA T 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0023;AVGPOST=0.9979;RSQ=0.6705;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62564810 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0073;AVGPOST=0.9988;RSQ=0.9350;ERATE=0.0003;THETA=0.0010;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62564956 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0056;AVGPOST=0.9980;RSQ=0.8775;ERATE=0.0004;THETA=0.0011;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62564988 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0132;AVGPOST=0.9982;RSQ=0.9502;ERATE=0.0005;THETA=0.0007;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 62565019 rs71050197 C CT 700 PASS INDEL;BAVGPOST=0.491;BRSQ=0.142;LDAF=0.4067;AVGPOST=0.6259;RSQ=0.3216;ERATE=0.0319;THETA=0.0004;AC=743;AN=2184 GT:DS:GL:BD 0.34020147 0 1 62565082 . T TG 18 PASS INDEL;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0016;AVGPOST=0.9982;RSQ=0.5558;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62565094 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0077;AVGPOST=0.9985;RSQ=0.9216;ERATE=0.0004;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62565096 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0125;AVGPOST=0.9978;RSQ=0.9234;ERATE=0.0005;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62565121 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7860;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62565187 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0035;AVGPOST=0.9976;RSQ=0.7746;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62565205 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0097;AVGPOST=0.9998;RSQ=0.9886;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62565389 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62565435 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0068;AVGPOST=0.9995;RSQ=0.9741;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62565436 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0068;AVGPOST=0.9994;RSQ=0.9694;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62565665 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.916;LDAF=0.0084;AVGPOST=0.9975;RSQ=0.8954;ERATE=0.0003;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62565679 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0102;AVGPOST=0.9988;RSQ=0.9485;ERATE=0.0004;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62565713 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62565787 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0368;AVGPOST=0.9983;RSQ=0.9844;ERATE=0.0003;THETA=0.0008;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 62565791 rs11336658 CT C 31782 PASS INDEL;BAVGPOST=0.995;BRSQ=0.990;LDAF=0.2229;AVGPOST=0.9911;RSQ=0.9810;ERATE=0.0007;THETA=0.0008;AC=486;AN=2184 GT:DS:GL:BD 0.22252747 0 1 62565839 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9997;RSQ=0.9833;ERATE=0.0003;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62565891 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9571;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62566018 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0087;AVGPOST=0.9990;RSQ=0.9523;ERATE=0.0004;THETA=0.0015;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62566159 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0160;AVGPOST=1.0000;RSQ=0.9987;ERATE=0.0003;THETA=0.0006;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62566244 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0096;AVGPOST=0.9999;RSQ=0.9954;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62566298 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0165;AVGPOST=1.0000;RSQ=0.9987;ERATE=0.0003;THETA=0.0008;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62566521 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7996;ERATE=0.0003;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62566614 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0097;AVGPOST=0.9998;RSQ=0.9887;ERATE=0.0003;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62566662 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0060;AVGPOST=0.9976;RSQ=0.8501;ERATE=0.0003;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62566936 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.880;LDAF=0.0365;AVGPOST=0.9877;RSQ=0.8647;ERATE=0.0033;THETA=0.0006;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 62566938 . T TC 36 PASS INDEL;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4717;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62566941 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0254;AVGPOST=0.9957;RSQ=0.9380;ERATE=0.0005;THETA=0.0007;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 62566967 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1271;AVGPOST=0.9961;RSQ=0.9869;ERATE=0.0004;THETA=0.0006;AC=276;AN=2184 GT:DS:GL:BD 0.12637363 0 1 62567004 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.742;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.5030;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62567057 . T TC 76 PASS INDEL;BAVGPOST=0.986;BRSQ=0.733;LDAF=0.0378;AVGPOST=0.9877;RSQ=0.8840;ERATE=0.0009;THETA=0.0005;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 62567058 . C CT 1601 PASS INDEL;BAVGPOST=0.989;BRSQ=0.794;LDAF=0.0327;AVGPOST=0.9979;RSQ=0.9694;ERATE=0.0004;THETA=0.0008;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 62567086 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0234;AVGPOST=0.9997;RSQ=0.9944;ERATE=0.0004;THETA=0.0007;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 62567091 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0046;AVGPOST=0.9994;RSQ=0.9400;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62567213 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.677;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4808;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62567707 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62567910 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0082;AVGPOST=0.9990;RSQ=0.9475;ERATE=0.0003;THETA=0.0029;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62568238 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0124;AVGPOST=0.9993;RSQ=0.9759;ERATE=0.0005;THETA=0.0009;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 62568248 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.781;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.3827;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62568344 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.847;LDAF=0.0025;AVGPOST=0.9982;RSQ=0.6881;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62568362 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6678;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62568573 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7990;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62568603 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1773;AVGPOST=0.9985;RSQ=0.9954;ERATE=0.0005;THETA=0.0016;AC=386;AN=2184 GT:DS:GL:BD 0.17673993 0 1 62568621 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0061;AVGPOST=0.9986;RSQ=0.9094;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62568680 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2248;AVGPOST=0.9990;RSQ=0.9976;ERATE=0.0003;THETA=0.0007;AC=490;AN=2184 GT:DS:GL:BD 0.22435898 0 1 62568685 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9233;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62568766 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6158;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62569069 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8247;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62569097 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0029;AVGPOST=0.9981;RSQ=0.7333;ERATE=0.0004;THETA=0.0021;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62569374 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7860;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62569398 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0075;AVGPOST=0.9984;RSQ=0.9067;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62569483 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62569540 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0165;AVGPOST=0.9999;RSQ=0.9961;ERATE=0.0003;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62569654 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0071;AVGPOST=0.9994;RSQ=0.9640;ERATE=0.0003;THETA=0.0011;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62569772 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.766;LDAF=0.0030;AVGPOST=0.9989;RSQ=0.8589;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62569856 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0025;AVGPOST=0.9989;RSQ=0.8068;ERATE=0.0005;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62569951 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0311;AVGPOST=0.9977;RSQ=0.9744;ERATE=0.0003;THETA=0.0003;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 62569979 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0733;AVGPOST=0.9985;RSQ=0.9915;ERATE=0.0003;THETA=0.0016;AC=161;AN=2184 GT:DS:GL:BD 0.07371795 0 1 62569995 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0023;AVGPOST=0.9975;RSQ=0.5459;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62570161 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0167;AVGPOST=0.9995;RSQ=0.9877;ERATE=0.0003;THETA=0.0015;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62570167 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7551;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62570216 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8221;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62570321 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2324;AVGPOST=0.9948;RSQ=0.9895;ERATE=0.0004;THETA=0.0004;AC=507;AN=2184 GT:DS:GL:BD 0.23214285 0 1 62570327 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6559;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62570336 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4534;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62570420 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.516;LDAF=0.0029;AVGPOST=0.9979;RSQ=0.6693;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62570437 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0091;AVGPOST=0.9986;RSQ=0.9300;ERATE=0.0004;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62570475 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0209;AVGPOST=0.9980;RSQ=0.9587;ERATE=0.0004;THETA=0.0003;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 62570476 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0169;AVGPOST=0.9991;RSQ=0.9761;ERATE=0.0005;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62570487 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0077;AVGPOST=0.9988;RSQ=0.9338;ERATE=0.0004;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62570571 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.963;LDAF=0.2499;AVGPOST=0.9933;RSQ=0.9858;ERATE=0.0006;THETA=0.0008;AC=545;AN=2184 GT:DS:GL:BD 0.24954212 0 1 62570593 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.980;LDAF=0.1697;AVGPOST=0.9971;RSQ=0.9914;ERATE=0.0004;THETA=0.0003;AC=371;AN=2184 GT:DS:GL:BD 0.16987179 0 1 62570687 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0169;AVGPOST=0.9986;RSQ=0.9666;ERATE=0.0006;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62570704 . AAAAG A 2324 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0173;AVGPOST=0.9983;RSQ=0.9609;ERATE=0.0004;THETA=0.0012;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62570790 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0075;AVGPOST=0.9990;RSQ=0.9629;ERATE=0.0003;THETA=0.0050;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62570885 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9996;RSQ=0.9748;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62570935 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5110;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62571200 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.758;LDAF=0.0027;AVGPOST=0.9973;RSQ=0.6123;ERATE=0.0010;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62571228 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.1601;AVGPOST=0.9984;RSQ=0.9955;ERATE=0.0004;THETA=0.0004;AC=349;AN=2184 GT:DS:GL:BD 0.15979853 0 1 62571284 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1601;AVGPOST=0.9987;RSQ=0.9966;ERATE=0.0003;THETA=0.0010;AC=349;AN=2184 GT:DS:GL:BD 0.15979853 0 1 62571408 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6960;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62571469 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0368;AVGPOST=0.9995;RSQ=0.9940;ERATE=0.0003;THETA=0.0007;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 62571508 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0164;AVGPOST=0.9991;RSQ=0.9791;ERATE=0.0003;THETA=0.0008;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62571550 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.586;LDAF=0.0031;AVGPOST=0.9979;RSQ=0.7465;ERATE=0.0003;THETA=0.0017;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62571566 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0020;AVGPOST=0.9981;RSQ=0.6094;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62571590 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.710;LDAF=0.0025;AVGPOST=0.9961;RSQ=0.4527;ERATE=0.0006;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62571603 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0087;AVGPOST=0.9963;RSQ=0.8382;ERATE=0.0006;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62571675 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.717;LDAF=0.0117;AVGPOST=0.9905;RSQ=0.6999;ERATE=0.0006;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62571787 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.605;BRSQ=0.284;LDAF=0.4838;AVGPOST=0.6905;RSQ=0.4143;ERATE=0.0637;THETA=0.0008;AC=994;AN=2184 GT:DS:GL:BD 0.45512819 0 1 62571814 . ATATG A 1049 PASS INDEL;BAVGPOST=0.926;BRSQ=0.479;LDAF=0.0994;AVGPOST=0.9094;RSQ=0.6063;ERATE=0.0060;THETA=0.0005;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 62571816 . ATGTG A 735 PASS INDEL;BAVGPOST=0.920;BRSQ=0.546;LDAF=0.1264;AVGPOST=0.9373;RSQ=0.7704;ERATE=0.0029;THETA=0.0017;AC=250;AN=2184 GT:DS:GL:BD 0.11446887 0 1 62571828 . GTGTATATATA G 1510 PASS INDEL;BAVGPOST=0.843;BRSQ=0.340;LDAF=0.2104;AVGPOST=0.8096;RSQ=0.5551;ERATE=0.0134;THETA=0.0003;AC=368;AN=2184 GT:DS:GL:BD 0.16849817 0 1 62571854 . A ATATATATATC 1665 PASS INDEL;BAVGPOST=0.914;BRSQ=0.378;LDAF=0.1576;AVGPOST=0.7987;RSQ=0.3892;ERATE=0.0229;THETA=0.0013;AC=185;AN=2184 GT:DS:GL:BD 0.08470696 0 1 62572150 . A AT 2586 PASS INDEL;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0240;AVGPOST=0.9989;RSQ=0.9797;ERATE=0.0003;THETA=0.0006;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 62572188 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.759;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62572229 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0038;AVGPOST=0.9989;RSQ=0.8879;ERATE=0.0003;THETA=0.0014;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62572316 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6392;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62572351 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0036;AVGPOST=0.9967;RSQ=0.6787;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62572390 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62572697 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.980;LDAF=0.1173;AVGPOST=0.9987;RSQ=0.9949;ERATE=0.0004;THETA=0.0008;AC=256;AN=2184 GT:DS:GL:BD 0.11721612 0 1 62572708 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4867;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62572774 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0257;AVGPOST=0.9970;RSQ=0.9515;ERATE=0.0006;THETA=0.0004;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 62572798 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.784;LDAF=0.0534;AVGPOST=0.9845;RSQ=0.8814;ERATE=0.0005;THETA=0.0004;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 62572806 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.963;LDAF=0.0192;AVGPOST=0.9969;RSQ=0.9341;ERATE=0.0004;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 62572992 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2490;AVGPOST=0.9923;RSQ=0.9851;ERATE=0.0009;THETA=0.0005;AC=542;AN=2184 GT:DS:GL:BD 0.24816850 0 1 62573159 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7359;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62573348 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0071;AVGPOST=0.9996;RSQ=0.9758;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62573372 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0048;AVGPOST=0.9996;RSQ=0.9621;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62573786 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62573831 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5624;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62573869 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7199;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62573895 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0125;AVGPOST=0.9996;RSQ=0.9867;ERATE=0.0003;THETA=0.0009;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 62573907 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9997;RSQ=0.9841;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62574016 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0188;AVGPOST=1.0000;RSQ=0.9989;ERATE=0.0004;THETA=0.0003;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 62574133 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62574193 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62574393 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0152;AVGPOST=0.9992;RSQ=0.9820;ERATE=0.0003;THETA=0.0007;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62574459 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0110;AVGPOST=0.9999;RSQ=0.9960;ERATE=0.0003;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62574477 . AT A 468 PASS INDEL;BAVGPOST=0.996;BRSQ=0.660;LDAF=0.0116;AVGPOST=0.9904;RSQ=0.6802;ERATE=0.0008;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62574497 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0088;AVGPOST=0.9996;RSQ=0.9803;ERATE=0.0004;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62574614 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6725;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62574713 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.661;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7247;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62574715 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0041;AVGPOST=0.9987;RSQ=0.8790;ERATE=0.0004;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62574827 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2376;AVGPOST=0.9991;RSQ=0.9981;ERATE=0.0003;THETA=0.0008;AC=519;AN=2184 GT:DS:GL:BD 0.23763736 0 1 62574839 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7144;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62574882 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0049;AVGPOST=0.9983;RSQ=0.8513;ERATE=0.0004;THETA=0.0021;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62574989 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5444;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62574992 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8455;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62575234 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0109;AVGPOST=0.9997;RSQ=0.9870;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62575315 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0156;AVGPOST=0.9997;RSQ=0.9919;ERATE=0.0003;THETA=0.0007;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62575332 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0032;AVGPOST=0.9988;RSQ=0.8663;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62575427 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.4899;AVGPOST=0.9962;RSQ=0.9950;ERATE=0.0004;THETA=0.0006;AC=1067;AN=2184 GT:DS:GL:BD 0.48855311 0 1 62575467 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62575500 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0032;AVGPOST=0.9996;RSQ=0.9403;ERATE=0.0004;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62575540 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6493;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62575709 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0007;AVGPOST=0.9991;RSQ=0.5041;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62575730 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0018;AVGPOST=0.9993;RSQ=0.8342;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62575797 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5450;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62575823 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6530;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62575884 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0012;AVGPOST=0.9996;RSQ=0.8793;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62575911 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2385;AVGPOST=0.9978;RSQ=0.9952;ERATE=0.0005;THETA=0.0004;AC=521;AN=2184 GT:DS:GL:BD 0.23855311 0 1 62575925 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0125;AVGPOST=0.9997;RSQ=0.9907;ERATE=0.0003;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 62575981 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2534;AVGPOST=0.9979;RSQ=0.9958;ERATE=0.0005;THETA=0.0009;AC=555;AN=2184 GT:DS:GL:BD 0.25412089 0 1 62575987 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7941;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62576022 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0202;AVGPOST=0.9998;RSQ=0.9955;ERATE=0.0003;THETA=0.0025;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 62576038 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.736;LDAF=0.0575;AVGPOST=0.9600;RSQ=0.7016;ERATE=0.0249;THETA=0.0004;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 62576042 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.958;LDAF=0.0359;AVGPOST=0.9974;RSQ=0.9735;ERATE=0.0004;THETA=0.0006;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 62576066 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7418;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62576091 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0157;AVGPOST=0.9997;RSQ=0.9919;ERATE=0.0004;THETA=0.0006;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62576324 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.853;LDAF=0.0057;AVGPOST=0.9989;RSQ=0.9211;ERATE=0.0003;THETA=0.0034;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62576417 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0156;AVGPOST=0.9999;RSQ=0.9973;ERATE=0.0003;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62576438 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0052;AVGPOST=0.9993;RSQ=0.9446;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62576518 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0153;AVGPOST=0.9995;RSQ=0.9866;ERATE=0.0003;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62576539 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62576553 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0209;AVGPOST=0.9988;RSQ=0.9795;ERATE=0.0003;THETA=0.0020;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 62576580 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62576631 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0106;AVGPOST=0.9984;RSQ=0.9397;ERATE=0.0003;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 62576671 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0076;AVGPOST=0.9994;RSQ=0.9623;ERATE=0.0004;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62576676 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0080;AVGPOST=0.9986;RSQ=0.9466;ERATE=0.0003;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62576681 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0151;AVGPOST=0.9999;RSQ=0.9958;ERATE=0.0003;THETA=0.0007;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62576754 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0151;AVGPOST=0.9998;RSQ=0.9944;ERATE=0.0003;THETA=0.0008;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62576814 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0316;AVGPOST=0.9988;RSQ=0.9848;ERATE=0.0003;THETA=0.0005;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 62576819 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.969;LDAF=0.0076;AVGPOST=0.9994;RSQ=0.9612;ERATE=0.0004;THETA=0.0011;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62576863 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.763;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6258;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62577298 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.624;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62577316 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.970;LDAF=0.0151;AVGPOST=0.9980;RSQ=0.9550;ERATE=0.0004;THETA=0.0009;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62577483 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0163;AVGPOST=0.9972;RSQ=0.9410;ERATE=0.0006;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62577523 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0156;AVGPOST=0.9987;RSQ=0.9632;ERATE=0.0006;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62577581 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0186;AVGPOST=0.9958;RSQ=0.9071;ERATE=0.0008;THETA=0.0006;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62577621 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8717;ERATE=0.0004;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62577623 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0126;AVGPOST=0.9986;RSQ=0.9587;ERATE=0.0005;THETA=0.0041;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62577624 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0074;AVGPOST=0.9988;RSQ=0.9341;ERATE=0.0004;THETA=0.0011;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62577750 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0222;AVGPOST=0.9985;RSQ=0.9762;ERATE=0.0003;THETA=0.0013;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 62577778 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0150;AVGPOST=0.9992;RSQ=0.9778;ERATE=0.0005;THETA=0.0034;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 62577802 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7136;ERATE=0.0004;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62577893 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.252;LDAF=0.9880;AVGPOST=0.9863;RSQ=0.5834;ERATE=0.0010;THETA=0.0006;AC=2162;AN=2184 GT:DS:GL:BD 0.98992676 1 1 62578038 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.943;LDAF=0.0088;AVGPOST=0.9978;RSQ=0.8947;ERATE=0.0005;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62578067 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9988;RSQ=0.9295;ERATE=0.0003;THETA=0.0056;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62578081 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0163;AVGPOST=0.9993;RSQ=0.9809;ERATE=0.0003;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62578214 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0006;AVGPOST=0.9991;RSQ=0.5532;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62578372 . CTT C 539 PASS INDEL;BAVGPOST=0.999;BRSQ=0.848;LDAF=0.0055;AVGPOST=0.9969;RSQ=0.7720;ERATE=0.0006;THETA=0.0011;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62578447 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0128;AVGPOST=0.9995;RSQ=0.9836;ERATE=0.0003;THETA=0.0015;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62578549 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.901;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9025;ERATE=0.0003;THETA=0.0022;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62578592 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.906;LDAF=0.0088;AVGPOST=0.9986;RSQ=0.9428;ERATE=0.0003;THETA=0.0031;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62578618 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6633;ERATE=0.0003;THETA=0.0048;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62578760 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6907;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62578917 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.4104;AVGPOST=0.9969;RSQ=0.9956;ERATE=0.0005;THETA=0.0005;AC=895;AN=2184 GT:DS:GL:BD 0.40979853 0 1 62578944 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4197;AVGPOST=0.9977;RSQ=0.9971;ERATE=0.0004;THETA=0.0037;AC=916;AN=2184 GT:DS:GL:BD 0.41941392 0 1 62578979 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7332;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62578994 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0114;AVGPOST=0.9991;RSQ=0.9685;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62579081 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8894;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62579158 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.0979;AVGPOST=0.9997;RSQ=0.9985;ERATE=0.0003;THETA=0.0008;AC=214;AN=2184 GT:DS:GL:BD 0.09798535 0 1 62579213 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.680;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4826;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62579252 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6468;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62579315 . TAAAC T 2267 PASS INDEL;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0125;AVGPOST=0.9989;RSQ=0.9644;ERATE=0.0004;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 62579344 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9990;RSQ=0.9669;ERATE=0.0003;THETA=0.0011;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62579408 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0212;AVGPOST=0.9997;RSQ=0.9926;ERATE=0.0003;THETA=0.0004;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 62579437 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7931;AVGPOST=0.9993;RSQ=0.9983;ERATE=0.0004;THETA=0.0009;AC=1733;AN=2184 GT:DS:GL:BD 0.79349816 1 1 62579463 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3332;AVGPOST=0.9995;RSQ=0.9993;ERATE=0.0003;THETA=0.0003;AC=726;AN=2184 GT:DS:GL:BD 0.33241758 0 1 62579483 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62579523 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.6452;AVGPOST=0.9994;RSQ=0.9989;ERATE=0.0003;THETA=0.0006;AC=1409;AN=2184 GT:DS:GL:BD 0.64514655 1 1 62579524 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62579579 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7530;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62579585 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62579672 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7856;AVGPOST=0.9999;RSQ=0.9997;ERATE=0.0003;THETA=0.0007;AC=1716;AN=2184 GT:DS:GL:BD 0.78571427 1 1 62579758 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9940;ERATE=0.0004;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62579823 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6453;AVGPOST=0.9998;RSQ=0.9997;ERATE=0.0003;THETA=0.0004;AC=1409;AN=2184 GT:DS:GL:BD 0.64514655 1 1 62579834 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62579838 . TGAG T 426 PASS INDEL;BAVGPOST=0.998;BRSQ=0.719;LDAF=0.0090;AVGPOST=0.9895;RSQ=0.5769;ERATE=0.0008;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62579891 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0307;AVGPOST=0.9992;RSQ=0.9894;ERATE=0.0003;THETA=0.0003;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 62579901 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62579907 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3002;AVGPOST=0.9997;RSQ=0.9995;ERATE=0.0011;THETA=0.0004;AC=657;AN=2184 GT:DS:GL:BD 0.30082417 0 1 62579926 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62579932 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62579980 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62580014 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.6663;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62580015 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0032;AVGPOST=1.0000;RSQ=0.9932;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62580197 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8885;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62580201 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3013;AVGPOST=0.9984;RSQ=0.9976;ERATE=0.0006;THETA=0.0005;AC=660;AN=2184 GT:DS:GL:BD 0.30219781 0 1 62580216 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9582;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62580236 . GA G 81 PASS INDEL;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6092;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62580325 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9997;RSQ=0.9836;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62580386 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62580398 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9998;RSQ=0.9864;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62580405 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9998;RSQ=0.9872;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62580428 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0111;AVGPOST=0.9997;RSQ=0.9862;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62580440 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9370;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62580446 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62580625 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0072;AVGPOST=0.9993;RSQ=0.9573;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62580715 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.786;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62580817 . T TA 185 PASS INDEL;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0047;AVGPOST=0.9978;RSQ=0.7929;ERATE=0.0007;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62580854 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.988;LDAF=0.6666;AVGPOST=0.9791;RSQ=0.9665;ERATE=0.0029;THETA=0.0007;AC=1465;AN=2184 GT:DS:GL:BD 0.67078757 1 1 62580888 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.823;LDAF=0.0030;AVGPOST=0.9985;RSQ=0.7655;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62580918 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.898;LDAF=0.0123;AVGPOST=0.9981;RSQ=0.9321;ERATE=0.0006;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 62581105 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.972;LDAF=0.9380;AVGPOST=0.9925;RSQ=0.9534;ERATE=0.0006;THETA=0.0003;AC=2051;AN=2184 GT:DS:GL:BD 0.93910259 1 1 62581270 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5405;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62581299 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0019;AVGPOST=0.9994;RSQ=0.8458;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62581318 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5490;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62581358 . GT G 50 PASS INDEL;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6742;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62581400 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7102;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62581719 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9998;RSQ=0.9861;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62581891 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62581897 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0107;AVGPOST=0.9981;RSQ=0.9285;ERATE=0.0003;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 62581952 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0214;AVGPOST=0.9994;RSQ=0.9893;ERATE=0.0003;THETA=0.0005;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 62582115 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62582164 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62582212 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0390;AVGPOST=0.9995;RSQ=0.9947;ERATE=0.0004;THETA=0.0004;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 62582311 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62582328 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62582439 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7721;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62582552 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.782;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6425;ERATE=0.0010;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62582599 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62582847 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=0.9998;RSQ=0.9911;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62582897 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9944;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62582948 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62583131 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9997;RSQ=0.9806;ERATE=0.0003;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62583237 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7034;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62583359 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9230;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62583361 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3695;AVGPOST=0.9988;RSQ=0.9984;ERATE=0.0004;THETA=0.0003;AC=809;AN=2184 GT:DS:GL:BD 0.37042123 0 1 62583379 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.933;LDAF=0.0226;AVGPOST=0.9985;RSQ=0.9704;ERATE=0.0004;THETA=0.0003;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 62583418 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62583420 . G GT 1642 PASS INDEL;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0125;AVGPOST=0.9990;RSQ=0.9675;ERATE=0.0004;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 62583429 . A AT 29599 PASS INDEL;BAVGPOST=0.989;BRSQ=0.981;LDAF=0.3151;AVGPOST=0.9753;RSQ=0.9646;ERATE=0.0052;THETA=0.0007;AC=687;AN=2184 GT:DS:GL:BD 0.31456044 0 1 62583495 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0036;AVGPOST=0.9993;RSQ=0.9309;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62583527 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3014;AVGPOST=0.9989;RSQ=0.9984;ERATE=0.0003;THETA=0.0003;AC=660;AN=2184 GT:DS:GL:BD 0.30219781 0 1 62583587 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0311;AVGPOST=0.9981;RSQ=0.9743;ERATE=0.0003;THETA=0.0005;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 62583588 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6794;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62583619 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.896;LDAF=0.0105;AVGPOST=0.9979;RSQ=0.9240;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62583629 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9998;RSQ=0.9806;ERATE=0.0003;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62583632 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6538;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62583670 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6671;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62583676 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3679;AVGPOST=0.9961;RSQ=0.9949;ERATE=0.0007;THETA=0.0003;AC=803;AN=2184 GT:DS:GL:BD 0.36767399 0 1 62583712 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3698;AVGPOST=0.9980;RSQ=0.9974;ERATE=0.0004;THETA=0.0007;AC=809;AN=2184 GT:DS:GL:BD 0.37042123 0 1 62584106 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8138;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62584179 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.921;LDAF=0.0024;AVGPOST=0.9994;RSQ=0.8924;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62584278 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0035;AVGPOST=0.9991;RSQ=0.8849;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62584295 rs112763190 C CTTAT 8793 PASS INDEL;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0579;AVGPOST=0.9976;RSQ=0.9832;ERATE=0.0006;THETA=0.0004;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 62584317 . T TA 23 PASS INDEL;BAVGPOST=0.994;BRSQ=0.423;LDAF=0.0067;AVGPOST=0.9955;RSQ=0.7414;ERATE=0.0006;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62584325 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.677;LDAF=0.0043;AVGPOST=0.9974;RSQ=0.7666;ERATE=0.0005;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62584364 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0042;AVGPOST=0.9990;RSQ=0.9090;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62584371 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0078;AVGPOST=0.9984;RSQ=0.9253;ERATE=0.0004;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62584394 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0199;AVGPOST=0.9960;RSQ=0.9200;ERATE=0.0005;THETA=0.0006;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 62584397 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.836;LDAF=0.0121;AVGPOST=0.9957;RSQ=0.8659;ERATE=0.0003;THETA=0.0009;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62584426 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.987;LDAF=0.3613;AVGPOST=0.9931;RSQ=0.9901;ERATE=0.0008;THETA=0.0011;AC=787;AN=2184 GT:DS:GL:BD 0.36034799 0 1 62584427 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.650;LDAF=0.0020;AVGPOST=0.9985;RSQ=0.6743;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62584838 . ATATATCT A 2835 PASS INDEL;BAVGPOST=0.995;BRSQ=0.863;LDAF=0.0143;AVGPOST=0.9984;RSQ=0.9573;ERATE=0.0003;THETA=0.0013;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62584843 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62584887 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62584962 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.731;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7815;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62584998 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0211;AVGPOST=0.9998;RSQ=0.9946;ERATE=0.0003;THETA=0.0003;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 62585006 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62585340 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.939;LDAF=0.0213;AVGPOST=0.9993;RSQ=0.9831;ERATE=0.0003;THETA=0.0008;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 62585351 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3447;AVGPOST=0.9972;RSQ=0.9955;ERATE=0.0006;THETA=0.0009;AC=755;AN=2184 GT:DS:GL:BD 0.34569597 0 1 62585372 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.6114;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62585419 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.3943;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62585479 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.7799;AVGPOST=0.9915;RSQ=0.9808;ERATE=0.0009;THETA=0.0004;AC=1708;AN=2184 GT:DS:GL:BD 0.78205127 1 1 62585654 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3750;AVGPOST=0.9958;RSQ=0.9944;ERATE=0.0009;THETA=0.0007;AC=819;AN=2184 GT:DS:GL:BD 0.37500000 0 1 62585798 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7339;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62585843 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9209;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62585865 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0022;AVGPOST=0.9977;RSQ=0.6178;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62585990 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.3976;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62586098 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.972;LDAF=0.2984;AVGPOST=0.9917;RSQ=0.9878;ERATE=0.0005;THETA=0.0004;AC=659;AN=2184 GT:DS:GL:BD 0.30173993 0 1 62586099 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.969;LDAF=0.7611;AVGPOST=0.9922;RSQ=0.9831;ERATE=0.0005;THETA=0.0004;AC=1667;AN=2184 GT:DS:GL:BD 0.76327837 1 1 62586110 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.630;LDAF=0.0045;AVGPOST=0.9970;RSQ=0.7199;ERATE=0.0003;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62586138 . GT G 546 PASS INDEL;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0103;AVGPOST=0.9980;RSQ=0.9201;ERATE=0.0004;THETA=0.0009;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62586179 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.3740;AVGPOST=0.9971;RSQ=0.9961;ERATE=0.0005;THETA=0.0006;AC=819;AN=2184 GT:DS:GL:BD 0.37500000 0 1 62586204 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0023;AVGPOST=0.9969;RSQ=0.5688;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62586312 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0070;AVGPOST=0.9997;RSQ=0.9812;ERATE=0.0003;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62586370 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5532;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62586449 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0668;AVGPOST=0.9995;RSQ=0.9968;ERATE=0.0003;THETA=0.0003;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 62586469 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.779;LDAF=0.0035;AVGPOST=0.9974;RSQ=0.6782;ERATE=0.0006;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62586506 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0670;AVGPOST=0.9994;RSQ=0.9962;ERATE=0.0003;THETA=0.0004;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 62586638 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62586685 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8656;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62586734 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62586737 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0297;AVGPOST=1.0000;RSQ=0.9993;ERATE=0.0003;THETA=0.0009;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 62586759 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9914;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62586799 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.5797;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62586824 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62586842 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62586871 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8390;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62586947 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62587111 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0071;AVGPOST=0.9995;RSQ=0.9642;ERATE=0.0003;THETA=0.0018;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62587135 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.800;LDAF=0.0040;AVGPOST=0.9988;RSQ=0.8725;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62587208 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.3976;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62587213 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0176;AVGPOST=0.9968;RSQ=0.9239;ERATE=0.0006;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62587224 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0105;AVGPOST=0.9981;RSQ=0.9180;ERATE=0.0005;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62587274 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0072;AVGPOST=0.9992;RSQ=0.9570;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62587298 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.968;LDAF=0.2970;AVGPOST=0.9899;RSQ=0.9844;ERATE=0.0009;THETA=0.0005;AC=652;AN=2184 GT:DS:GL:BD 0.29853481 0 1 62587313 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0035;AVGPOST=0.9954;RSQ=0.5109;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62587385 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.605;LDAF=0.0036;AVGPOST=0.9957;RSQ=0.5275;ERATE=0.0006;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62587395 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.950;LDAF=0.0729;AVGPOST=0.9894;RSQ=0.9460;ERATE=0.0011;THETA=0.0005;AC=155;AN=2184 GT:DS:GL:BD 0.07097070 0 1 62587400 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0120;AVGPOST=0.9942;RSQ=0.8196;ERATE=0.0009;THETA=0.0011;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62587401 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.580;LDAF=0.0232;AVGPOST=0.9850;RSQ=0.7611;ERATE=0.0011;THETA=0.0009;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 62587448 . G GA 8036 PASS INDEL;BAVGPOST=0.791;BRSQ=0.590;LDAF=0.5923;AVGPOST=0.7388;RSQ=0.5581;ERATE=0.0782;THETA=0.0004;AC=1376;AN=2184 GT:DS:GL:BD 0.63003665 1 1 62587498 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62587563 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4772;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62587652 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.3005;AVGPOST=0.9985;RSQ=0.9976;ERATE=0.0004;THETA=0.0003;AC=658;AN=2184 GT:DS:GL:BD 0.30128205 0 1 62587654 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.609;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6875;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62587720 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.997;LDAF=0.2989;AVGPOST=0.9976;RSQ=0.9965;ERATE=0.0005;THETA=0.0005;AC=655;AN=2184 GT:DS:GL:BD 0.29990843 0 1 62587792 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.604;LDAF=0.0060;AVGPOST=0.9955;RSQ=0.7002;ERATE=0.0007;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62587812 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.573;LDAF=0.0075;AVGPOST=0.9907;RSQ=0.5581;ERATE=0.0008;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62587843 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0071;AVGPOST=0.9994;RSQ=0.9588;ERATE=0.0003;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62587849 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6098;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62587865 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0070;AVGPOST=0.9996;RSQ=0.9779;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62587974 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5326;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62587987 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6678;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62588187 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0080;AVGPOST=0.9996;RSQ=0.9781;ERATE=0.0004;THETA=0.0013;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62588286 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4423;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62588334 . TA T 964 PASS INDEL;BAVGPOST=0.996;BRSQ=0.936;LDAF=0.0263;AVGPOST=0.9952;RSQ=0.9352;ERATE=0.0008;THETA=0.0005;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 62588357 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.961;LDAF=0.2951;AVGPOST=0.9911;RSQ=0.9871;ERATE=0.0005;THETA=0.0006;AC=653;AN=2184 GT:DS:GL:BD 0.29899266 0 1 62588370 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.973;LDAF=0.3834;AVGPOST=0.9809;RSQ=0.9773;ERATE=0.0011;THETA=0.0024;AC=849;AN=2184 GT:DS:GL:BD 0.38873628 0 1 62588672 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.681;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62588747 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62588798 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6211;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62588826 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62588856 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62589063 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0021;AVGPOST=0.9980;RSQ=0.6662;ERATE=0.0004;THETA=0.0025;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62589101 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0017;AVGPOST=0.9981;RSQ=0.5268;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62589196 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.980;LDAF=0.3410;AVGPOST=0.9885;RSQ=0.9838;ERATE=0.0007;THETA=0.0006;AC=747;AN=2184 GT:DS:GL:BD 0.34203297 0 1 62589219 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.958;LDAF=0.2979;AVGPOST=0.9826;RSQ=0.9739;ERATE=0.0018;THETA=0.0011;AC=656;AN=2184 GT:DS:GL:BD 0.30036631 0 1 62589238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0226;AVGPOST=0.9975;RSQ=0.9522;ERATE=0.0004;THETA=0.0006;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 62589351 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.689;LDAF=0.0044;AVGPOST=0.9947;RSQ=0.4959;ERATE=0.0009;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62589392 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.890;BRSQ=0.647;LDAF=0.1526;AVGPOST=0.9101;RSQ=0.7939;ERATE=0.0007;THETA=0.0016;AC=326;AN=2184 GT:DS:GL:BD 0.14926741 0 1 62589395 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.892;BRSQ=0.657;LDAF=0.1523;AVGPOST=0.9113;RSQ=0.7998;ERATE=0.0009;THETA=0.0004;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 62589400 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.895;BRSQ=0.679;LDAF=0.1521;AVGPOST=0.9147;RSQ=0.8069;ERATE=0.0004;THETA=0.0004;AC=324;AN=2184 GT:DS:GL:BD 0.14835165 0 1 62589429 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.959;LDAF=0.0195;AVGPOST=0.9873;RSQ=0.7623;ERATE=0.0006;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 62589434 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.892;BRSQ=0.710;LDAF=0.1727;AVGPOST=0.9106;RSQ=0.8227;ERATE=0.0011;THETA=0.0003;AC=375;AN=2184 GT:DS:GL:BD 0.17170329 0 1 62589701 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62589704 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0040;AVGPOST=0.9984;RSQ=0.8256;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62589766 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0220;AVGPOST=0.9987;RSQ=0.9753;ERATE=0.0004;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 62589793 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3549;AVGPOST=0.9979;RSQ=0.9974;ERATE=0.0003;THETA=0.0003;AC=777;AN=2184 GT:DS:GL:BD 0.35576922 0 1 62589818 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.3531;AVGPOST=0.9923;RSQ=0.9889;ERATE=0.0008;THETA=0.0002;AC=774;AN=2184 GT:DS:GL:BD 0.35439560 0 1 62589903 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0071;AVGPOST=0.9995;RSQ=0.9698;ERATE=0.0004;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62589964 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0119;AVGPOST=0.9997;RSQ=0.9884;ERATE=0.0003;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62589993 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.556;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.6385;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62589998 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0104;AVGPOST=0.9994;RSQ=0.9734;ERATE=0.0003;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62590051 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2993;AVGPOST=0.9980;RSQ=0.9970;ERATE=0.0003;THETA=0.0005;AC=655;AN=2184 GT:DS:GL:BD 0.29990843 0 1 62590053 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7795;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62590068 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0199;AVGPOST=0.9983;RSQ=0.9711;ERATE=0.0003;THETA=0.0003;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 62590166 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6983;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62590355 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3540;AVGPOST=0.9960;RSQ=0.9949;ERATE=0.0008;THETA=0.0003;AC=775;AN=2184 GT:DS:GL:BD 0.35485348 0 1 62590527 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0035;AVGPOST=0.9979;RSQ=0.7892;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62590533 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0212;AVGPOST=0.9996;RSQ=0.9918;ERATE=0.0004;THETA=0.0007;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 62590726 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9916;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62590774 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0010;AVGPOST=0.9985;RSQ=0.3901;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62590895 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.491;LDAF=0.0154;AVGPOST=0.9838;RSQ=0.5981;ERATE=0.0018;THETA=0.0008;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62590917 . A AC 122 PASS INDEL;BAVGPOST=0.998;BRSQ=0.612;LDAF=0.0066;AVGPOST=0.9951;RSQ=0.7161;ERATE=0.0008;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62590960 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0089;AVGPOST=0.9986;RSQ=0.9284;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62591042 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62591239 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0603;AVGPOST=0.9989;RSQ=0.9928;ERATE=0.0004;THETA=0.0031;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 62591336 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62591412 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0359;AVGPOST=0.9994;RSQ=0.9932;ERATE=0.0003;THETA=0.0004;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 62591428 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0263;AVGPOST=0.9993;RSQ=0.9907;ERATE=0.0003;THETA=0.0005;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 62591464 . CAG C 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3857;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62591468 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6054;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62591511 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.614;LDAF=0.0044;AVGPOST=0.9977;RSQ=0.7849;ERATE=0.0007;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62591557 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0032;AVGPOST=0.9979;RSQ=0.7358;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62591560 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0208;AVGPOST=0.9995;RSQ=0.9900;ERATE=0.0003;THETA=0.0005;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 62591634 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0291;AVGPOST=0.9994;RSQ=0.9895;ERATE=0.0003;THETA=0.0009;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 62591640 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0166;AVGPOST=0.9995;RSQ=0.9872;ERATE=0.0003;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62591731 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4363;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62591757 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0023;AVGPOST=0.9987;RSQ=0.7710;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62591763 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62592006 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.7805;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62592141 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9992;RSQ=0.3993;ERATE=0.0004;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62592236 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0103;AVGPOST=0.9995;RSQ=0.9748;ERATE=0.0004;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62592292 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62592306 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0165;AVGPOST=0.9999;RSQ=0.9961;ERATE=0.0003;THETA=0.0002;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62592365 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62592468 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0360;AVGPOST=0.9993;RSQ=0.9920;ERATE=0.0003;THETA=0.0005;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 62592649 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0529;AVGPOST=0.9989;RSQ=0.9928;ERATE=0.0004;THETA=0.0044;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 62592748 . A AT 88 PASS INDEL;BAVGPOST=0.982;BRSQ=0.635;LDAF=0.0166;AVGPOST=0.9904;RSQ=0.7842;ERATE=0.0003;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62592866 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0276;AVGPOST=0.9991;RSQ=0.9883;ERATE=0.0003;THETA=0.0021;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 62593009 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3125;AVGPOST=0.9973;RSQ=0.9960;ERATE=0.0003;THETA=0.0008;AC=684;AN=2184 GT:DS:GL:BD 0.31318682 0 1 62593115 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.800;LDAF=0.0053;AVGPOST=0.9974;RSQ=0.8227;ERATE=0.0005;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62593196 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.893;LDAF=0.0058;AVGPOST=0.9981;RSQ=0.8653;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62593220 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0035;AVGPOST=0.9993;RSQ=0.9246;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62593273 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0365;AVGPOST=0.9979;RSQ=0.9759;ERATE=0.0006;THETA=0.0045;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 62593348 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.798;LDAF=0.0021;AVGPOST=0.9990;RSQ=0.7891;ERATE=0.0003;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62593391 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.603;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5877;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62593410 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.926;LDAF=0.0296;AVGPOST=0.9966;RSQ=0.9603;ERATE=0.0004;THETA=0.0016;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 62593411 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.7994;ERATE=0.0003;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62593467 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0224;AVGPOST=0.9988;RSQ=0.9748;ERATE=0.0005;THETA=0.0007;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 62593504 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.681;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8664;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62593656 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62593661 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8470;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62593682 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62593737 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7193;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62593749 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.7043;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62593750 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0039;AVGPOST=0.9996;RSQ=0.9550;ERATE=0.0003;THETA=0.0012;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62593836 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9854;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62593893 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3336;AVGPOST=0.9971;RSQ=0.9959;ERATE=0.0010;THETA=0.0008;AC=727;AN=2184 GT:DS:GL:BD 0.33287546 0 1 62593935 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0070;AVGPOST=0.9993;RSQ=0.9572;ERATE=0.0003;THETA=0.0055;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62594082 . CT C 148 PASS INDEL;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0016;AVGPOST=0.9983;RSQ=0.4984;ERATE=0.0006;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62594188 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9947;ERATE=0.0003;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62594203 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0005;AVGPOST=0.9993;RSQ=0.4953;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62594221 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6273;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62594277 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.659;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6843;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62594304 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0042;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62594395 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0112;AVGPOST=0.9995;RSQ=0.9806;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62594480 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9927;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62594536 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0036;AVGPOST=0.9991;RSQ=0.8942;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62594566 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62594593 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3276;AVGPOST=0.9996;RSQ=0.9994;ERATE=0.0003;THETA=0.0009;AC=714;AN=2184 GT:DS:GL:BD 0.32692307 0 1 62594648 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62594663 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8313;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62594674 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9537;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62594677 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2253;AVGPOST=0.9990;RSQ=0.9980;ERATE=0.0003;THETA=0.0003;AC=491;AN=2184 GT:DS:GL:BD 0.22481684 0 1 62594753 . AATT A 1029 PASS INDEL;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0103;AVGPOST=0.9995;RSQ=0.9741;ERATE=0.0005;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62594784 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0028;AVGPOST=0.9997;RSQ=0.9481;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62594861 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62594940 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8061;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62595059 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0170;AVGPOST=0.9978;RSQ=0.9491;ERATE=0.0003;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62595101 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.786;LDAF=0.0022;AVGPOST=0.9977;RSQ=0.5863;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62595302 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6309;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62595424 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0022;AVGPOST=0.9989;RSQ=0.8141;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62595509 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0084;AVGPOST=0.9978;RSQ=0.9002;ERATE=0.0004;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62595565 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.5851;ERATE=0.0006;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62595653 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.619;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4969;ERATE=0.0006;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62595661 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.0535;AVGPOST=0.9974;RSQ=0.9825;ERATE=0.0004;THETA=0.0004;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 62595833 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4652;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62595843 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0028;AVGPOST=0.9973;RSQ=0.6626;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62595853 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7153;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62595869 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4179;ERATE=0.0006;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62595877 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.784;LDAF=0.0093;AVGPOST=0.9937;RSQ=0.7422;ERATE=0.0008;THETA=0.0011;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62595948 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.715;LDAF=0.0028;AVGPOST=0.9955;RSQ=0.4843;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62596044 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6043;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62596145 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0026;AVGPOST=0.9983;RSQ=0.7541;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62596171 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.560;LDAF=0.0030;AVGPOST=0.9973;RSQ=0.6281;ERATE=0.0008;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62596208 . TAATAAAA T 149 PASS INDEL;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0080;AVGPOST=0.9948;RSQ=0.7442;ERATE=0.0006;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62596211 . TAAAA T 11 PASS INDEL;BAVGPOST=0.999;BRSQ=0.782;LDAF=0.0021;AVGPOST=0.9970;RSQ=0.4201;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62596306 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.489;LDAF=0.0195;AVGPOST=0.9749;RSQ=0.4569;ERATE=0.0016;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62596384 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.882;LDAF=0.0607;AVGPOST=0.9864;RSQ=0.9078;ERATE=0.0010;THETA=0.0003;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 62596388 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.735;LDAF=0.0102;AVGPOST=0.9933;RSQ=0.7435;ERATE=0.0007;THETA=0.0037;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62596480 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.953;LDAF=0.0170;AVGPOST=0.9960;RSQ=0.9059;ERATE=0.0006;THETA=0.0012;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62596502 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.768;LDAF=0.0080;AVGPOST=0.9949;RSQ=0.7532;ERATE=0.0006;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62596529 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.992;LDAF=0.3577;AVGPOST=0.9965;RSQ=0.9946;ERATE=0.0004;THETA=0.0003;AC=778;AN=2184 GT:DS:GL:BD 0.35622710 0 1 62596534 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62596587 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4371;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62596607 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.7381;AVGPOST=0.9972;RSQ=0.9942;ERATE=0.0005;THETA=0.0006;AC=1611;AN=2184 GT:DS:GL:BD 0.73763734 1 1 62596670 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.6569;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62596679 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3193;AVGPOST=0.9975;RSQ=0.9961;ERATE=0.0003;THETA=0.0004;AC=696;AN=2184 GT:DS:GL:BD 0.31868133 0 1 62596814 . G GTC 29 PASS INDEL;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7393;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62596963 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7841;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62596969 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.982;LDAF=0.1391;AVGPOST=0.9943;RSQ=0.9836;ERATE=0.0004;THETA=0.0007;AC=302;AN=2184 GT:DS:GL:BD 0.13827839 0 1 62596991 . C CT 92 PASS INDEL;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4377;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62597009 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0199;AVGPOST=0.9990;RSQ=0.9800;ERATE=0.0003;THETA=0.0007;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 62597028 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62597059 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62597101 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0026;AVGPOST=0.9986;RSQ=0.7909;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62597105 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0036;AVGPOST=0.9993;RSQ=0.9317;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62597316 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6288;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62597334 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9989;RSQ=0.9385;ERATE=0.0004;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62597352 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6231;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62597376 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.680;LDAF=0.0094;AVGPOST=0.9964;RSQ=0.8466;ERATE=0.0005;THETA=0.0018;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62597498 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0349;AVGPOST=0.9993;RSQ=0.9898;ERATE=0.0003;THETA=0.0003;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 62597511 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.926;LDAF=0.0206;AVGPOST=0.9986;RSQ=0.9686;ERATE=0.0004;THETA=0.0004;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 62597565 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0042;AVGPOST=0.9978;RSQ=0.7653;ERATE=0.0006;THETA=0.0017;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62597574 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.965;LDAF=0.0206;AVGPOST=0.9984;RSQ=0.9644;ERATE=0.0004;THETA=0.0105;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 62597582 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.987;LDAF=0.7380;AVGPOST=0.9919;RSQ=0.9843;ERATE=0.0005;THETA=0.0006;AC=1614;AN=2184 GT:DS:GL:BD 0.73901099 1 1 62597691 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.797;LDAF=0.0118;AVGPOST=0.9986;RSQ=0.9570;ERATE=0.0004;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 62597717 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.987;LDAF=0.0353;AVGPOST=0.9964;RSQ=0.9542;ERATE=0.0006;THETA=0.0007;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 62597766 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.928;LDAF=0.0390;AVGPOST=0.9958;RSQ=0.9541;ERATE=0.0006;THETA=0.0006;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 62597811 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0073;AVGPOST=0.9969;RSQ=0.8404;ERATE=0.0003;THETA=0.0045;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62597867 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.959;LDAF=0.0203;AVGPOST=0.9994;RSQ=0.9860;ERATE=0.0003;THETA=0.0007;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 62597908 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.707;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8514;ERATE=0.0004;THETA=0.0055;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62598027 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.833;LDAF=0.0075;AVGPOST=0.9963;RSQ=0.8136;ERATE=0.0005;THETA=0.0011;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62598075 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0094;AVGPOST=0.9974;RSQ=0.8851;ERATE=0.0005;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62598152 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5301;ERATE=0.0004;THETA=0.0057;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62598201 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62598208 . T TAA 1969 PASS INDEL;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0107;AVGPOST=0.9979;RSQ=0.9291;ERATE=0.0004;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62598226 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5873;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62598297 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0188;AVGPOST=0.9977;RSQ=0.9535;ERATE=0.0005;THETA=0.0021;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 62598318 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6927;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62598355 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.765;LDAF=0.0087;AVGPOST=0.9926;RSQ=0.6550;ERATE=0.0008;THETA=0.0017;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62598369 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0110;AVGPOST=0.9981;RSQ=0.9228;ERATE=0.0004;THETA=0.0009;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62598404 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0199;AVGPOST=0.9979;RSQ=0.9603;ERATE=0.0004;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 62598433 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7082;AVGPOST=0.9951;RSQ=0.9906;ERATE=0.0007;THETA=0.0005;AC=1546;AN=2184 GT:DS:GL:BD 0.70787543 1 1 62598501 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.955;LDAF=0.0201;AVGPOST=0.9982;RSQ=0.9574;ERATE=0.0006;THETA=0.0011;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 62598546 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.506;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4769;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62598580 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.534;LDAF=0.0117;AVGPOST=0.9904;RSQ=0.6863;ERATE=0.0015;THETA=0.0010;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62598741 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.803;LDAF=0.0172;AVGPOST=0.9938;RSQ=0.8717;ERATE=0.0006;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62598742 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9047;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62598745 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6737;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62598759 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.931;LDAF=0.0246;AVGPOST=0.9931;RSQ=0.9041;ERATE=0.0004;THETA=0.0007;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 62598813 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.7285;AVGPOST=0.9976;RSQ=0.9956;ERATE=0.0004;THETA=0.0004;AC=1589;AN=2184 GT:DS:GL:BD 0.72756410 1 1 62598860 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.917;LDAF=0.0045;AVGPOST=0.9977;RSQ=0.8206;ERATE=0.0003;THETA=0.0013;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62598892 . A AT 9 PASS INDEL;BAVGPOST=0.985;BRSQ=0.394;LDAF=0.0146;AVGPOST=0.9883;RSQ=0.6717;ERATE=0.0018;THETA=0.0007;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 62598935 . AC A 44 PASS INDEL;BAVGPOST=0.999;BRSQ=0.568;LDAF=0.0020;AVGPOST=0.9982;RSQ=0.6181;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62598980 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.977;LDAF=0.7183;AVGPOST=0.9834;RSQ=0.9715;ERATE=0.0022;THETA=0.0007;AC=1577;AN=2184 GT:DS:GL:BD 0.72206962 1 1 62599022 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.966;LDAF=0.3074;AVGPOST=0.9710;RSQ=0.9569;ERATE=0.0048;THETA=0.0006;AC=669;AN=2184 GT:DS:GL:BD 0.30631867 0 1 62599065 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.966;LDAF=0.2880;AVGPOST=0.9634;RSQ=0.9449;ERATE=0.0041;THETA=0.0004;AC=630;AN=2184 GT:DS:GL:BD 0.28846154 0 1 62599134 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.361;LDAF=0.0014;AVGPOST=0.9974;RSQ=0.2613;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62599179 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.7278;AVGPOST=0.9938;RSQ=0.9890;ERATE=0.0007;THETA=0.0002;AC=1590;AN=2184 GT:DS:GL:BD 0.72802198 1 1 62599232 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2889;AVGPOST=0.9974;RSQ=0.9954;ERATE=0.0005;THETA=0.0005;AC=631;AN=2184 GT:DS:GL:BD 0.28891942 0 1 62599488 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.592;LDAF=0.0043;AVGPOST=0.9946;RSQ=0.4717;ERATE=0.0007;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62599495 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.906;LDAF=0.0122;AVGPOST=0.9969;RSQ=0.8922;ERATE=0.0007;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62599661 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0024;AVGPOST=0.9977;RSQ=0.5976;ERATE=0.0003;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62599719 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0200;AVGPOST=0.9988;RSQ=0.9727;ERATE=0.0003;THETA=0.0004;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 62599874 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3140;AVGPOST=0.9968;RSQ=0.9957;ERATE=0.0003;THETA=0.0004;AC=682;AN=2184 GT:DS:GL:BD 0.31227106 0 1 62599978 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.789;LDAF=0.0051;AVGPOST=0.9976;RSQ=0.8249;ERATE=0.0004;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62600066 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.7287;AVGPOST=0.9874;RSQ=0.9766;ERATE=0.0019;THETA=0.0006;AC=1596;AN=2184 GT:DS:GL:BD 0.73076922 1 1 62600075 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0102;AVGPOST=0.9970;RSQ=0.8675;ERATE=0.0006;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62600092 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0082;AVGPOST=0.9989;RSQ=0.9362;ERATE=0.0005;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62600098 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.856;LDAF=0.0192;AVGPOST=0.9964;RSQ=0.9269;ERATE=0.0006;THETA=0.0002;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 62600158 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.744;LDAF=0.0204;AVGPOST=0.9975;RSQ=0.9403;ERATE=0.0006;THETA=0.0004;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 62600175 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.940;LDAF=0.7167;AVGPOST=0.9641;RSQ=0.9395;ERATE=0.0024;THETA=0.0011;AC=1583;AN=2184 GT:DS:GL:BD 0.72481686 1 1 62600297 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.931;LDAF=0.7088;AVGPOST=0.9597;RSQ=0.9324;ERATE=0.0057;THETA=0.0004;AC=1562;AN=2184 GT:DS:GL:BD 0.71520144 1 1 62600313 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5809;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62600360 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9619;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62600443 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.3535;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62600565 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0044;AVGPOST=0.9949;RSQ=0.5799;ERATE=0.0007;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62600573 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0018;AVGPOST=0.9985;RSQ=0.7015;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62600673 rs67496115 TGTGA T 78612 PASS INDEL;BAVGPOST=0.993;BRSQ=0.987;LDAF=0.7324;AVGPOST=0.9805;RSQ=0.9655;ERATE=0.0035;THETA=0.0002;AC=1605;AN=2184 GT:DS:GL:BD 0.73489010 1 1 62600729 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.738;LDAF=0.0065;AVGPOST=0.9929;RSQ=0.5962;ERATE=0.0010;THETA=0.0017;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62600855 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0032;AVGPOST=0.9971;RSQ=0.6729;ERATE=0.0005;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62600892 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9332;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62600916 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.959;LDAF=0.6138;AVGPOST=0.9521;RSQ=0.9253;ERATE=0.0125;THETA=0.0003;AC=1355;AN=2184 GT:DS:GL:BD 0.62042123 1 1 62600926 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.588;LDAF=0.0030;AVGPOST=0.9965;RSQ=0.5654;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62600959 rs111837829 T TG 13 PASS INDEL;BAVGPOST=0.999;BRSQ=0.785;LDAF=0.0064;AVGPOST=0.9912;RSQ=0.4498;ERATE=0.0025;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62600969 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.3981;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62601014 . A AC 927 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0213;AVGPOST=0.9976;RSQ=0.9557;ERATE=0.0006;THETA=0.0005;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 62601106 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.745;LDAF=0.0282;AVGPOST=0.9898;RSQ=0.8538;ERATE=0.0003;THETA=0.0008;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 62601125 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0041;AVGPOST=0.9992;RSQ=0.9042;ERATE=0.0005;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62601135 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.969;LDAF=0.7244;AVGPOST=0.9738;RSQ=0.9547;ERATE=0.0037;THETA=0.0004;AC=1595;AN=2184 GT:DS:GL:BD 0.73031133 1 1 62601142 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0024;AVGPOST=0.9971;RSQ=0.4937;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62601163 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0035;AVGPOST=0.9979;RSQ=0.7522;ERATE=0.0004;THETA=0.0026;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62601277 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9416;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62601298 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0021;AVGPOST=0.9990;RSQ=0.8295;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62601331 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0036;AVGPOST=0.9981;RSQ=0.7989;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62601336 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0050;AVGPOST=0.9976;RSQ=0.8131;ERATE=0.0005;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62601366 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0109;AVGPOST=0.9995;RSQ=0.9805;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62601397 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0095;AVGPOST=0.9994;RSQ=0.9767;ERATE=0.0003;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62601454 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62601645 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0044;AVGPOST=0.9973;RSQ=0.7774;ERATE=0.0006;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62601812 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.964;LDAF=0.6665;AVGPOST=0.9883;RSQ=0.9802;ERATE=0.0008;THETA=0.0004;AC=1457;AN=2184 GT:DS:GL:BD 0.66712457 1 1 62601827 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.981;LDAF=0.3088;AVGPOST=0.9920;RSQ=0.9877;ERATE=0.0005;THETA=0.0001;AC=675;AN=2184 GT:DS:GL:BD 0.30906594 0 1 62602087 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6318;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62602096 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0463;AVGPOST=0.9986;RSQ=0.9867;ERATE=0.0003;THETA=0.0029;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 62602102 . GCTTT G 3027 PASS INDEL;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0316;AVGPOST=0.9962;RSQ=0.9501;ERATE=0.0006;THETA=0.0006;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 62602217 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.8192;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62602310 . TTA T 80 PASS INDEL;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8541;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62602320 rs72035939 CGT C 1885 PASS INDEL;BAVGPOST=0.676;BRSQ=0.433;LDAF=0.3923;AVGPOST=0.7173;RSQ=0.5258;ERATE=0.0455;THETA=0.0004;AC=795;AN=2184 GT:DS:GL:BD 0.36401099 0 1 62602500 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3635;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62602603 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.7608;AVGPOST=0.9983;RSQ=0.9963;ERATE=0.0003;THETA=0.0003;AC=1662;AN=2184 GT:DS:GL:BD 0.76098901 1 1 62602612 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0082;AVGPOST=0.9995;RSQ=0.9747;ERATE=0.0003;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62602669 . A ATCTT 235 PASS INDEL;BAVGPOST=1.000;BRSQ=0.692;LDAF=0.0016;AVGPOST=0.9983;RSQ=0.5594;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62602703 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8247;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62602788 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=0.9990;RSQ=0.9413;ERATE=0.0004;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62602789 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7574;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62602976 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6072;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62603052 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.508;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7699;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62603163 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.902;BRSQ=0.407;LDAF=0.1515;AVGPOST=0.8253;RSQ=0.4328;ERATE=0.0338;THETA=0.0040;AC=197;AN=2184 GT:DS:GL:BD 0.09020147 0 1 62603421 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4530;AVGPOST=0.9968;RSQ=0.9952;ERATE=0.0006;THETA=0.0005;AC=988;AN=2184 GT:DS:GL:BD 0.45238096 0 1 62603532 . T TG 359 PASS INDEL;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0080;AVGPOST=0.9987;RSQ=0.9285;ERATE=0.0004;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62603544 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.4518;AVGPOST=0.9976;RSQ=0.9962;ERATE=0.0007;THETA=0.0002;AC=987;AN=2184 GT:DS:GL:BD 0.45192307 0 1 62603618 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62603691 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0211;AVGPOST=0.9979;RSQ=0.9598;ERATE=0.0004;THETA=0.0023;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 62603864 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8795;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62603975 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9485;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62604014 . C CT 205 PASS INDEL;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0033;AVGPOST=0.9986;RSQ=0.8237;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62604065 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.975;LDAF=0.2356;AVGPOST=0.9963;RSQ=0.9925;ERATE=0.0005;THETA=0.0004;AC=514;AN=2184 GT:DS:GL:BD 0.23534799 0 1 62604140 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.716;LDAF=0.0033;AVGPOST=0.9964;RSQ=0.5935;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62604185 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.988;LDAF=0.3950;AVGPOST=0.9918;RSQ=0.9882;ERATE=0.0012;THETA=0.0004;AC=865;AN=2184 GT:DS:GL:BD 0.39606228 0 1 62604337 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6507;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62604384 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62604535 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8313;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62604542 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8493;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62604570 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2375;AVGPOST=0.9944;RSQ=0.9893;ERATE=0.0006;THETA=0.0004;AC=518;AN=2184 GT:DS:GL:BD 0.23717949 0 1 62604632 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62604696 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8977;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62604728 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0004;AVGPOST=0.9996;RSQ=0.5850;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62604738 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0033;AVGPOST=0.9962;RSQ=0.5987;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62604792 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.4473;AVGPOST=0.9958;RSQ=0.9936;ERATE=0.0008;THETA=0.0002;AC=980;AN=2184 GT:DS:GL:BD 0.44871795 0 1 62604795 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0037;AVGPOST=0.9988;RSQ=0.8841;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62604807 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.721;LDAF=0.0012;AVGPOST=0.9983;RSQ=0.3504;ERATE=0.0006;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62604853 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.731;LDAF=0.0068;AVGPOST=0.9925;RSQ=0.5780;ERATE=0.0008;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62604863 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.420;LDAF=0.9702;AVGPOST=0.9610;RSQ=0.4866;ERATE=0.0036;THETA=0.0008;AC=2139;AN=2184 GT:DS:GL:BD 0.97939563 1 1 62604915 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0125;AVGPOST=0.9969;RSQ=0.9045;ERATE=0.0006;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 62604917 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.960;LDAF=0.4431;AVGPOST=0.9870;RSQ=0.9807;ERATE=0.0013;THETA=0.0006;AC=972;AN=2184 GT:DS:GL:BD 0.44505495 0 1 62604929 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.672;LDAF=0.0043;AVGPOST=0.9943;RSQ=0.5013;ERATE=0.0011;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62604997 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.601;LDAF=0.0040;AVGPOST=0.9964;RSQ=0.6397;ERATE=0.0007;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62605001 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0027;AVGPOST=0.9967;RSQ=0.5242;ERATE=0.0004;THETA=0.0022;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62605059 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.867;LDAF=0.0191;AVGPOST=0.9956;RSQ=0.9052;ERATE=0.0006;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 62605347 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62605362 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0221;AVGPOST=0.9996;RSQ=0.9926;ERATE=0.0003;THETA=0.0006;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 62605437 . T TTTC 1950 PASS INDEL;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0306;AVGPOST=0.9975;RSQ=0.9691;ERATE=0.0006;THETA=0.0039;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 62605524 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0883;AVGPOST=0.9964;RSQ=0.9844;ERATE=0.0005;THETA=0.0027;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 62605525 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.2976;AVGPOST=0.9906;RSQ=0.9857;ERATE=0.0019;THETA=0.0005;AC=648;AN=2184 GT:DS:GL:BD 0.29670331 0 1 62605569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.741;LDAF=0.0049;AVGPOST=0.9972;RSQ=0.8170;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62605585 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.565;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6342;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62605675 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0074;AVGPOST=0.9989;RSQ=0.9281;ERATE=0.0007;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62605811 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8199;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62605812 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7490;ERATE=0.0004;THETA=0.0042;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62605918 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62605920 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0300;AVGPOST=0.9995;RSQ=0.9929;ERATE=0.0004;THETA=0.0015;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 62605964 . G GGATGT 5217 PASS INDEL;BAVGPOST=0.997;BRSQ=0.932;LDAF=0.0235;AVGPOST=0.9955;RSQ=0.9275;ERATE=0.0003;THETA=0.0004;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 62605971 . A AT 80 PASS INDEL;BAVGPOST=0.988;BRSQ=0.704;LDAF=0.0172;AVGPOST=0.9888;RSQ=0.7879;ERATE=0.0004;THETA=0.0007;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 62606008 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.732;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8052;ERATE=0.0004;THETA=0.0038;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62606077 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.920;LDAF=0.0193;AVGPOST=0.9975;RSQ=0.9404;ERATE=0.0008;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 62606128 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.882;LDAF=0.0170;AVGPOST=0.9901;RSQ=0.7641;ERATE=0.0008;THETA=0.0060;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62606129 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.976;LDAF=0.4506;AVGPOST=0.9912;RSQ=0.9876;ERATE=0.0009;THETA=0.0003;AC=986;AN=2184 GT:DS:GL:BD 0.45146519 0 1 62606171 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0109;AVGPOST=0.9967;RSQ=0.8889;ERATE=0.0006;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62606177 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.4213;AVGPOST=0.9936;RSQ=0.9906;ERATE=0.0009;THETA=0.0004;AC=920;AN=2184 GT:DS:GL:BD 0.42124543 0 1 62606233 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.974;LDAF=0.0300;AVGPOST=0.9991;RSQ=0.9877;ERATE=0.0005;THETA=0.0005;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 62606266 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.678;LDAF=0.0055;AVGPOST=0.9968;RSQ=0.7648;ERATE=0.0005;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62606300 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0889;AVGPOST=0.9986;RSQ=0.9925;ERATE=0.0007;THETA=0.0005;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 62606321 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0301;AVGPOST=0.9985;RSQ=0.9811;ERATE=0.0004;THETA=0.0007;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 62606380 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0887;AVGPOST=0.9996;RSQ=0.9980;ERATE=0.0003;THETA=0.0005;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 62606396 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62606415 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62606445 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0069;AVGPOST=0.9980;RSQ=0.8816;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62606600 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0029;AVGPOST=0.9978;RSQ=0.7625;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62606603 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0065;AVGPOST=0.9989;RSQ=0.9286;ERATE=0.0005;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62606692 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9640;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62606693 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.7738;AVGPOST=0.9962;RSQ=0.9916;ERATE=0.0005;THETA=0.0005;AC=1692;AN=2184 GT:DS:GL:BD 0.77472526 1 1 62606736 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0321;AVGPOST=0.9994;RSQ=0.9918;ERATE=0.0003;THETA=0.0003;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 62606749 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0066;AVGPOST=0.9989;RSQ=0.9385;ERATE=0.0003;THETA=0.0010;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62606878 . CCA C 70 PASS INDEL;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.6475;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62607008 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62607090 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.688;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5316;ERATE=0.0004;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62607134 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0314;AVGPOST=0.9993;RSQ=0.9908;ERATE=0.0003;THETA=0.0003;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 62607185 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.709;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8198;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62607231 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.691;LDAF=0.0037;AVGPOST=0.9979;RSQ=0.7871;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62607374 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0177;AVGPOST=0.9985;RSQ=0.9683;ERATE=0.0003;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 62607432 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0197;AVGPOST=0.9991;RSQ=0.9793;ERATE=0.0003;THETA=0.0005;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 62607456 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.643;LDAF=0.0021;AVGPOST=0.9989;RSQ=0.7684;ERATE=0.0004;THETA=0.0017;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62607457 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.991;LDAF=0.4482;AVGPOST=0.9948;RSQ=0.9924;ERATE=0.0007;THETA=0.0003;AC=980;AN=2184 GT:DS:GL:BD 0.44871795 0 1 62607566 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0031;AVGPOST=0.9964;RSQ=0.5338;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62607567 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.867;LDAF=0.0159;AVGPOST=0.9986;RSQ=0.9598;ERATE=0.0004;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62607616 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0312;AVGPOST=0.9997;RSQ=0.9962;ERATE=0.0003;THETA=0.0004;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 62607650 . ATAAT A 229 PASS INDEL;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0036;AVGPOST=0.9983;RSQ=0.7928;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62607712 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0196;AVGPOST=0.9990;RSQ=0.9800;ERATE=0.0003;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 62607737 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7425;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62607768 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0311;AVGPOST=0.9999;RSQ=0.9981;ERATE=0.0003;THETA=0.0002;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 62607784 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.9019;ERATE=0.0003;THETA=0.0039;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62607786 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3905;AVGPOST=0.9986;RSQ=0.9977;ERATE=0.0005;THETA=0.0004;AC=853;AN=2184 GT:DS:GL:BD 0.39056778 0 1 62607808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0063;AVGPOST=0.9993;RSQ=0.9538;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62607840 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0309;AVGPOST=0.9989;RSQ=0.9867;ERATE=0.0003;THETA=0.0008;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 62607850 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.966;LDAF=0.0310;AVGPOST=0.9994;RSQ=0.9920;ERATE=0.0003;THETA=0.0003;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 62607859 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.4511;AVGPOST=0.9959;RSQ=0.9946;ERATE=0.0007;THETA=0.0007;AC=985;AN=2184 GT:DS:GL:BD 0.45100734 0 1 62607871 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.739;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.8957;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62607878 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0100;AVGPOST=0.9992;RSQ=0.9694;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62607880 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.979;LDAF=0.0181;AVGPOST=0.9979;RSQ=0.9496;ERATE=0.0003;THETA=0.0012;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62608010 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62608062 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.756;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62608084 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62608370 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62608375 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.9053;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62608390 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0075;AVGPOST=0.9996;RSQ=0.9792;ERATE=0.0004;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62608468 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0080;AVGPOST=0.9986;RSQ=0.9412;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62608475 . T TG 54 PASS INDEL;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62608500 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62608521 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.545;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62608578 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62608584 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0316;AVGPOST=0.9988;RSQ=0.9877;ERATE=0.0003;THETA=0.0003;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 62608613 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7556;AVGPOST=0.9983;RSQ=0.9962;ERATE=0.0004;THETA=0.0003;AC=1650;AN=2184 GT:DS:GL:BD 0.75549453 1 1 62608650 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0087;AVGPOST=0.9995;RSQ=0.9726;ERATE=0.0004;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62608840 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62608911 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0076;AVGPOST=0.9994;RSQ=0.9658;ERATE=0.0003;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62608982 . GA G 60 PASS INDEL;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.5871;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62609019 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6616;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62609149 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.676;LDAF=0.0044;AVGPOST=0.9948;RSQ=0.4862;ERATE=0.0009;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62609158 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.751;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.4763;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62609237 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.740;LDAF=0.0016;AVGPOST=0.9981;RSQ=0.5344;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62609276 . CCA C 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5715;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62609280 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7348;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62609296 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0171;AVGPOST=0.9996;RSQ=0.9898;ERATE=0.0003;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 62609381 . C CA 1410 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9894;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62609441 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0033;AVGPOST=0.9995;RSQ=0.9350;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62609552 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0895;AVGPOST=0.9993;RSQ=0.9964;ERATE=0.0003;THETA=0.0004;AC=195;AN=2184 GT:DS:GL:BD 0.08928572 0 1 62609563 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9497;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62609745 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62609760 . AC A 70 PASS INDEL;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4922;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62609800 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2958;AVGPOST=0.9973;RSQ=0.9958;ERATE=0.0003;THETA=0.0006;AC=647;AN=2184 GT:DS:GL:BD 0.29624543 0 1 62609807 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3065;AVGPOST=0.9975;RSQ=0.9960;ERATE=0.0003;THETA=0.0004;AC=671;AN=2184 GT:DS:GL:BD 0.30723444 0 1 62609865 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0117;AVGPOST=0.9995;RSQ=0.9811;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 62609877 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62609915 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8374;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62609947 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0330;AVGPOST=0.9998;RSQ=0.9977;ERATE=0.0003;THETA=0.0004;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 62609976 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0029;AVGPOST=0.9979;RSQ=0.7204;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62610016 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62610022 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0330;AVGPOST=0.9997;RSQ=0.9959;ERATE=0.0003;THETA=0.0005;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 62610053 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9212;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62610126 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0083;AVGPOST=0.9998;RSQ=0.9894;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62610136 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6120;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62610177 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62610214 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0224;AVGPOST=0.9989;RSQ=0.9769;ERATE=0.0003;THETA=0.0006;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 62610227 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9460;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62610232 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6680;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62610238 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0332;AVGPOST=0.9992;RSQ=0.9903;ERATE=0.0003;THETA=0.0004;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 62610257 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8474;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62610286 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0903;AVGPOST=0.9983;RSQ=0.9908;ERATE=0.0006;THETA=0.0003;AC=196;AN=2184 GT:DS:GL:BD 0.08974359 0 1 62610330 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.917;LDAF=0.1269;AVGPOST=0.9881;RSQ=0.9652;ERATE=0.0004;THETA=0.0004;AC=276;AN=2184 GT:DS:GL:BD 0.12637363 0 1 62610420 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0269;AVGPOST=0.9941;RSQ=0.9069;ERATE=0.0008;THETA=0.0004;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 62610488 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0261;AVGPOST=0.9966;RSQ=0.9455;ERATE=0.0005;THETA=0.0004;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 62610524 rs34874761 T TTTC 2731 PASS INDEL;BAVGPOST=0.996;BRSQ=0.955;LDAF=0.0327;AVGPOST=0.9964;RSQ=0.9603;ERATE=0.0008;THETA=0.0005;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 62610535 . CTTATT C 105 PASS INDEL;BAVGPOST=0.999;BRSQ=0.663;LDAF=0.0049;AVGPOST=0.9934;RSQ=0.4993;ERATE=0.0014;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62610644 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.711;LDAF=0.0052;AVGPOST=0.9964;RSQ=0.7208;ERATE=0.0010;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62610668 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.6762;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62610826 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.850;LDAF=0.0037;AVGPOST=0.9984;RSQ=0.8116;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62610918 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0220;AVGPOST=1.0000;RSQ=0.9990;ERATE=0.0003;THETA=0.0002;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 62611027 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0062;AVGPOST=0.9986;RSQ=0.9051;ERATE=0.0003;THETA=0.0013;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62611033 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0037;AVGPOST=0.9997;RSQ=0.9656;ERATE=0.0003;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62611071 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2947;AVGPOST=0.9959;RSQ=0.9926;ERATE=0.0006;THETA=0.0003;AC=641;AN=2184 GT:DS:GL:BD 0.29349816 0 1 62611072 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.950;LDAF=0.0208;AVGPOST=0.9974;RSQ=0.9497;ERATE=0.0004;THETA=0.0006;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 62611149 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0330;AVGPOST=0.9995;RSQ=0.9942;ERATE=0.0003;THETA=0.0003;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 62611197 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0244;AVGPOST=0.9988;RSQ=0.9773;ERATE=0.0004;THETA=0.0003;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 62611209 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6180;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62611229 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.874;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9766;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62611356 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0038;AVGPOST=0.9986;RSQ=0.8440;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62611398 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0058;AVGPOST=0.9969;RSQ=0.7959;ERATE=0.0005;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62611491 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.955;LDAF=0.7663;AVGPOST=0.9877;RSQ=0.9764;ERATE=0.0010;THETA=0.0003;AC=1679;AN=2184 GT:DS:GL:BD 0.76877290 1 1 62611499 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.981;LDAF=0.4007;AVGPOST=0.9905;RSQ=0.9864;ERATE=0.0006;THETA=0.0005;AC=880;AN=2184 GT:DS:GL:BD 0.40293041 0 1 62611502 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0199;AVGPOST=0.9973;RSQ=0.9410;ERATE=0.0006;THETA=0.0007;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 62611554 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.757;LDAF=0.0033;AVGPOST=0.9969;RSQ=0.6220;ERATE=0.0005;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62611555 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.7210;AVGPOST=0.9945;RSQ=0.9897;ERATE=0.0006;THETA=0.0005;AC=1578;AN=2184 GT:DS:GL:BD 0.72252744 1 1 62611645 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0111;AVGPOST=0.9991;RSQ=0.9672;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62611664 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5856;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62611666 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2947;AVGPOST=0.9973;RSQ=0.9949;ERATE=0.0006;THETA=0.0004;AC=642;AN=2184 GT:DS:GL:BD 0.29395604 0 1 62611822 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0102;AVGPOST=0.9987;RSQ=0.9515;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62611962 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0044;AVGPOST=0.9986;RSQ=0.8677;ERATE=0.0003;THETA=0.0037;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62612094 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0018;AVGPOST=0.9988;RSQ=0.7113;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62612176 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.7588;AVGPOST=0.9888;RSQ=0.9785;ERATE=0.0011;THETA=0.0045;AC=1653;AN=2184 GT:DS:GL:BD 0.75686812 1 1 62612214 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0199;AVGPOST=0.9983;RSQ=0.9707;ERATE=0.0003;THETA=0.0007;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 62612222 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0087;AVGPOST=0.9985;RSQ=0.9305;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62612244 . T TC 51 PASS INDEL;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5797;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62612264 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6165;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62612305 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0228;AVGPOST=0.9984;RSQ=0.9749;ERATE=0.0004;THETA=0.0003;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 62612374 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0107;AVGPOST=0.9970;RSQ=0.8893;ERATE=0.0004;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62612381 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.490;LDAF=0.0070;AVGPOST=0.9920;RSQ=0.5483;ERATE=0.0011;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62612406 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.515;LDAF=0.0046;AVGPOST=0.9957;RSQ=0.6023;ERATE=0.0008;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62612499 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.779;LDAF=0.0068;AVGPOST=0.9971;RSQ=0.8327;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62612528 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7640;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62612567 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0016;AVGPOST=0.9981;RSQ=0.5399;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62612684 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0222;AVGPOST=0.9993;RSQ=0.9847;ERATE=0.0004;THETA=0.0007;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 62612741 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0165;AVGPOST=0.9993;RSQ=0.9801;ERATE=0.0003;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62612880 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0063;AVGPOST=0.9993;RSQ=0.9605;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62612918 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0078;AVGPOST=0.9999;RSQ=0.9944;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62612978 rs78614618 T TG 88586 PASS INDEL;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7749;AVGPOST=0.9964;RSQ=0.9934;ERATE=0.0003;THETA=0.0004;AC=1692;AN=2184 GT:DS:GL:BD 0.77472526 1 1 62612994 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0018;AVGPOST=0.9994;RSQ=0.8662;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62613001 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.722;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7280;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62613098 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0133;AVGPOST=0.9982;RSQ=0.9409;ERATE=0.0004;THETA=0.0006;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62613182 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0016;AVGPOST=0.9980;RSQ=0.5631;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62613245 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.495;LDAF=0.0070;AVGPOST=0.9935;RSQ=0.6183;ERATE=0.0008;THETA=0.0013;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62613270 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0116;AVGPOST=0.9963;RSQ=0.8730;ERATE=0.0005;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62613300 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.986;LDAF=0.6860;AVGPOST=0.9865;RSQ=0.9758;ERATE=0.0015;THETA=0.0005;AC=1504;AN=2184 GT:DS:GL:BD 0.68864471 1 1 62613394 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.522;LDAF=0.0029;AVGPOST=0.9969;RSQ=0.5914;ERATE=0.0005;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62613426 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.390;LDAF=0.0033;AVGPOST=0.9950;RSQ=0.4311;ERATE=0.0007;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62613457 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.385;LDAF=0.0084;AVGPOST=0.9939;RSQ=0.7006;ERATE=0.0008;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62613468 rs34657838 TA T 640 PASS INDEL;BAVGPOST=0.790;BRSQ=0.252;LDAF=0.2215;AVGPOST=0.7429;RSQ=0.3704;ERATE=0.0347;THETA=0.0003;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 62613570 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0234;AVGPOST=0.9996;RSQ=0.9925;ERATE=0.0003;THETA=0.0005;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 62613612 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5040;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62613684 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.654;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5981;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62613786 rs66743140 CTG C 20252 PASS INDEL;BAVGPOST=0.937;BRSQ=0.881;LDAF=0.6388;AVGPOST=0.9095;RSQ=0.8576;ERATE=0.0112;THETA=0.0007;AC=1447;AN=2184 GT:DS:GL:BD 0.66254580 1 1 62613910 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62613951 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62614029 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62614095 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0083;AVGPOST=0.9996;RSQ=0.9771;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62614112 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0233;AVGPOST=0.9999;RSQ=0.9982;ERATE=0.0003;THETA=0.0008;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 62614132 . CA C 219 PASS INDEL;BAVGPOST=0.999;BRSQ=0.751;LDAF=0.0024;AVGPOST=0.9990;RSQ=0.8215;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62614164 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0755;AVGPOST=0.9995;RSQ=0.9970;ERATE=0.0004;THETA=0.0009;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 62614255 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5606;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62614297 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0168;AVGPOST=0.9985;RSQ=0.9683;ERATE=0.0004;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62614338 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62614340 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0622;AVGPOST=0.9989;RSQ=0.9922;ERATE=0.0003;THETA=0.0005;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 62614354 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9947;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62614357 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.5682;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62614364 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9895;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62614366 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0528;AVGPOST=0.9995;RSQ=0.9956;ERATE=0.0003;THETA=0.0006;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 62614376 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9799;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62614445 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5934;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62614453 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6862;AVGPOST=0.9980;RSQ=0.9963;ERATE=0.0003;THETA=0.0019;AC=1499;AN=2184 GT:DS:GL:BD 0.68635529 1 1 62614464 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7606;AVGPOST=0.9979;RSQ=0.9957;ERATE=0.0003;THETA=0.0004;AC=1661;AN=2184 GT:DS:GL:BD 0.76053113 1 1 62614538 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0029;AVGPOST=0.9974;RSQ=0.6336;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62614570 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0097;AVGPOST=0.9990;RSQ=0.9606;ERATE=0.0003;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62614578 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.879;LDAF=0.0097;AVGPOST=0.9960;RSQ=0.8184;ERATE=0.0008;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62614579 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.739;LDAF=0.0120;AVGPOST=0.9956;RSQ=0.8477;ERATE=0.0007;THETA=0.0016;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62614735 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0235;AVGPOST=0.9979;RSQ=0.9612;ERATE=0.0005;THETA=0.0004;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 62614857 rs77056792 T TC 70538 PASS INDEL;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7591;AVGPOST=0.9964;RSQ=0.9924;ERATE=0.0006;THETA=0.0002;AC=1659;AN=2184 GT:DS:GL:BD 0.75961536 1 1 62614860 . C CA 17920 PASS INDEL;BAVGPOST=0.940;BRSQ=0.867;LDAF=0.6742;AVGPOST=0.8874;RSQ=0.8120;ERATE=0.0384;THETA=0.0005;AC=1515;AN=2184 GT:DS:GL:BD 0.69368130 1 1 62615054 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7603;AVGPOST=0.9978;RSQ=0.9954;ERATE=0.0005;THETA=0.0054;AC=1661;AN=2184 GT:DS:GL:BD 0.76053113 1 1 62615095 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9555;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62615124 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.9099;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62615198 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0225;AVGPOST=0.9998;RSQ=0.9952;ERATE=0.0003;THETA=0.0008;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 62615252 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0033;AVGPOST=0.9996;RSQ=0.9476;ERATE=0.0003;THETA=0.0016;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62615320 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5663;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62615396 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0016;AVGPOST=0.9981;RSQ=0.5652;ERATE=0.0003;THETA=0.0033;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62615418 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.798;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6231;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62615463 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0020;AVGPOST=0.9993;RSQ=0.8390;ERATE=0.0003;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62615547 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5118;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62615554 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5883;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62615558 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8530;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62615683 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.759;LDAF=0.0032;AVGPOST=0.9972;RSQ=0.6841;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62615684 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.7638;AVGPOST=0.9974;RSQ=0.9945;ERATE=0.0007;THETA=0.0004;AC=1668;AN=2184 GT:DS:GL:BD 0.76373625 1 1 62615774 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.779;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8889;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62615883 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0068;AVGPOST=0.9992;RSQ=0.9496;ERATE=0.0003;THETA=0.0027;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62616219 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0075;AVGPOST=0.9997;RSQ=0.9816;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62616292 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0069;AVGPOST=0.9981;RSQ=0.8805;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62616299 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0093;AVGPOST=0.9996;RSQ=0.9829;ERATE=0.0003;THETA=0.0021;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62616425 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0068;AVGPOST=0.9977;RSQ=0.8626;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62616437 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.617;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6493;ERATE=0.0003;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62616572 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.982;LDAF=0.0870;AVGPOST=0.9957;RSQ=0.9788;ERATE=0.0005;THETA=0.0008;AC=187;AN=2184 GT:DS:GL:BD 0.08562271 0 1 62616594 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.966;LDAF=0.2987;AVGPOST=0.9838;RSQ=0.9750;ERATE=0.0013;THETA=0.0003;AC=661;AN=2184 GT:DS:GL:BD 0.30265567 0 1 62616599 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.974;LDAF=0.2247;AVGPOST=0.9878;RSQ=0.9772;ERATE=0.0011;THETA=0.0014;AC=487;AN=2184 GT:DS:GL:BD 0.22298534 0 1 62616820 rs77238897 AAAC A 71700 PASS INDEL;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.7275;AVGPOST=0.9948;RSQ=0.9901;ERATE=0.0005;THETA=0.0005;AC=1590;AN=2184 GT:DS:GL:BD 0.72802198 1 1 62616886 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0234;AVGPOST=0.9997;RSQ=0.9945;ERATE=0.0003;THETA=0.0005;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 62616988 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.984;LDAF=0.6918;AVGPOST=0.9872;RSQ=0.9785;ERATE=0.0022;THETA=0.0002;AC=1508;AN=2184 GT:DS:GL:BD 0.69047618 1 1 62617246 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0737;AVGPOST=0.9968;RSQ=0.9838;ERATE=0.0003;THETA=0.0005;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 62617253 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0068;AVGPOST=0.9979;RSQ=0.8703;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62617298 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6978;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62617386 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6008;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62617466 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0193;AVGPOST=0.9998;RSQ=0.9955;ERATE=0.0003;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 62617488 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.747;LDAF=0.0020;AVGPOST=0.9975;RSQ=0.5272;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62617492 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0280;AVGPOST=0.9988;RSQ=0.9834;ERATE=0.0003;THETA=0.0007;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 62617623 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7503;AVGPOST=0.9957;RSQ=0.9922;ERATE=0.0006;THETA=0.0004;AC=1640;AN=2184 GT:DS:GL:BD 0.75091577 1 1 62617702 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0004;AVGPOST=0.9993;RSQ=0.3789;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62617721 rs76335297 CTT C 16370 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0733;AVGPOST=0.9976;RSQ=0.9878;ERATE=0.0004;THETA=0.0007;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 62617794 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0015;AVGPOST=0.9991;RSQ=0.7837;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62617927 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7314;AVGPOST=0.9985;RSQ=0.9970;ERATE=0.0004;THETA=0.0003;AC=1598;AN=2184 GT:DS:GL:BD 0.73168498 1 1 62618022 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.5332;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62618059 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0376;AVGPOST=0.9998;RSQ=0.9971;ERATE=0.0003;THETA=0.0010;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 62618064 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.853;LDAF=0.0043;AVGPOST=0.9990;RSQ=0.8967;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62618118 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62618122 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.957;LDAF=0.0190;AVGPOST=0.9984;RSQ=0.9705;ERATE=0.0003;THETA=0.0002;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 62618248 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.810;LDAF=0.0107;AVGPOST=0.9952;RSQ=0.8271;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62618337 . A AT 260 PASS INDEL;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62618416 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.822;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.8279;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62618507 rs61334298 G GTA 3938 PASS INDEL;BAVGPOST=0.996;BRSQ=0.883;LDAF=0.0211;AVGPOST=0.9985;RSQ=0.9695;ERATE=0.0004;THETA=0.0015;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 62618659 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.703;LDAF=0.0035;AVGPOST=0.9984;RSQ=0.8134;ERATE=0.0004;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62618698 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9133;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62618719 . AAAG A 9834 PASS INDEL;BAVGPOST=0.962;BRSQ=0.932;LDAF=0.2867;AVGPOST=0.9718;RSQ=0.9578;ERATE=0.0018;THETA=0.0004;AC=635;AN=2184 GT:DS:GL:BD 0.29075092 0 1 62618720 . AAG A 39718 PASS INDEL;BAVGPOST=0.986;BRSQ=0.978;LDAF=0.3044;AVGPOST=0.9937;RSQ=0.9907;ERATE=0.0003;THETA=0.0005;AC=669;AN=2184 GT:DS:GL:BD 0.30631867 0 1 62618723 . AGT A 8241 PASS INDEL;BAVGPOST=0.956;BRSQ=0.918;LDAF=0.2875;AVGPOST=0.9679;RSQ=0.9523;ERATE=0.0019;THETA=0.0011;AC=638;AN=2184 GT:DS:GL:BD 0.29212454 0 1 62618748 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.990;LDAF=0.3034;AVGPOST=0.9952;RSQ=0.9928;ERATE=0.0003;THETA=0.0004;AC=664;AN=2184 GT:DS:GL:BD 0.30402932 0 1 62618849 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0215;AVGPOST=0.9998;RSQ=0.9947;ERATE=0.0003;THETA=0.0003;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 62619000 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9057;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62619127 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0027;AVGPOST=0.9974;RSQ=0.6507;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62619169 . T TA 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.702;LDAF=0.0020;AVGPOST=0.9990;RSQ=0.7695;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62619197 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.6565;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62619286 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8125;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62619464 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62619469 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.4529;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62619666 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.809;LDAF=0.0186;AVGPOST=0.9909;RSQ=0.8008;ERATE=0.0007;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62619713 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0193;AVGPOST=0.9963;RSQ=0.9188;ERATE=0.0003;THETA=0.0010;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 62619730 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.981;LDAF=0.0818;AVGPOST=0.9977;RSQ=0.9869;ERATE=0.0005;THETA=0.0022;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 62619757 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.448;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.4252;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62619765 . GCCATGTTGC G 109 PASS INDEL;BAVGPOST=0.999;BRSQ=0.643;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4056;ERATE=0.0006;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62619779 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.686;LDAF=0.0113;AVGPOST=0.9906;RSQ=0.6729;ERATE=0.0009;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62619799 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0217;AVGPOST=0.9966;RSQ=0.9413;ERATE=0.0003;THETA=0.0006;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 62619825 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0425;AVGPOST=0.9990;RSQ=0.9897;ERATE=0.0004;THETA=0.0004;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 62619858 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62619931 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4122;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62619960 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.7749;AVGPOST=0.9960;RSQ=0.9926;ERATE=0.0003;THETA=0.0003;AC=1695;AN=2184 GT:DS:GL:BD 0.77609891 1 1 62620029 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0029;AVGPOST=0.9984;RSQ=0.8334;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62620056 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.6462;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62620071 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7601;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62620109 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6579;ERATE=0.0003;THETA=0.0029;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62620149 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.701;LDAF=0.0028;AVGPOST=0.9971;RSQ=0.5824;ERATE=0.0006;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62620158 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0428;AVGPOST=0.9979;RSQ=0.9812;ERATE=0.0005;THETA=0.0003;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 62620240 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0210;AVGPOST=0.9994;RSQ=0.9875;ERATE=0.0003;THETA=0.0005;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 62620287 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3062;AVGPOST=0.9964;RSQ=0.9941;ERATE=0.0006;THETA=0.0009;AC=670;AN=2184 GT:DS:GL:BD 0.30677655 0 1 62620347 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62620467 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0065;AVGPOST=0.9997;RSQ=0.9799;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62620525 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62620536 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.786;LDAF=0.0035;AVGPOST=0.9984;RSQ=0.8267;ERATE=0.0004;THETA=0.0043;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62620645 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.9025;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62620764 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7340;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62620801 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62621016 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0031;AVGPOST=0.9987;RSQ=0.8427;ERATE=0.0005;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62621044 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.8220;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62621089 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7287;AVGPOST=0.9945;RSQ=0.9891;ERATE=0.0004;THETA=0.0006;AC=1592;AN=2184 GT:DS:GL:BD 0.72893775 1 1 62621171 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0081;AVGPOST=0.9993;RSQ=0.9642;ERATE=0.0005;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62621446 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0410;AVGPOST=0.9994;RSQ=0.9930;ERATE=0.0003;THETA=0.0005;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 62621623 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.973;LDAF=0.0207;AVGPOST=0.9943;RSQ=0.8869;ERATE=0.0008;THETA=0.0006;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 62621889 . TAAAA T 695 PASS INDEL;BAVGPOST=0.991;BRSQ=0.559;LDAF=0.0134;AVGPOST=0.9971;RSQ=0.9043;ERATE=0.0005;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62621896 . AT A 59 PASS INDEL;BAVGPOST=0.999;BRSQ=0.554;LDAF=0.0053;AVGPOST=0.9937;RSQ=0.4956;ERATE=0.0012;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62621897 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0048;AVGPOST=0.9957;RSQ=0.6583;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62621903 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2923;AVGPOST=0.9917;RSQ=0.9868;ERATE=0.0006;THETA=0.0004;AC=643;AN=2184 GT:DS:GL:BD 0.29441392 0 1 62622042 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.914;LDAF=0.0122;AVGPOST=0.9953;RSQ=0.8590;ERATE=0.0006;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62622076 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.617;LDAF=0.0020;AVGPOST=0.9991;RSQ=0.7969;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62622084 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0047;AVGPOST=0.9987;RSQ=0.8963;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62622097 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.721;LDAF=0.0125;AVGPOST=0.9943;RSQ=0.8352;ERATE=0.0006;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62622104 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0232;AVGPOST=0.9992;RSQ=0.9828;ERATE=0.0004;THETA=0.0004;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 62622173 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.446;LDAF=0.0023;AVGPOST=0.9978;RSQ=0.6011;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62622201 . C CA 271 PASS INDEL;BAVGPOST=0.958;BRSQ=0.533;LDAF=0.0799;AVGPOST=0.9077;RSQ=0.4869;ERATE=0.0184;THETA=0.0006;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 62622299 . T TG 7 PASS INDEL;BAVGPOST=0.999;BRSQ=0.589;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4885;ERATE=0.0004;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62622552 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0219;AVGPOST=0.9989;RSQ=0.9755;ERATE=0.0004;THETA=0.0006;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 62622681 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0093;AVGPOST=0.9997;RSQ=0.9849;ERATE=0.0003;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62622760 . C CA 94 PASS INDEL;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62622765 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.718;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7528;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62622904 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.342;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.4570;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62622932 MERGED_DEL_2_3758 GTTGCAGTGAGCGGAGATTACACCATTGCACTCCAGCCTGGATGACAGAGCAAGACTCCATCTCAAAAAAAAAAGTTATCTTGCTCAACTAAGAAATTATTTAATTCAACCCCTCCAGAAATTATTTAATTCAGCCCCTTATAACTCCTACACACCCAAAGTGCCTGCGAATGATCACTGGCACTTTGGG G . . SV;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0717;AVGPOST=0.9967;RSQ=0.9830;ERATE=0.0004;THETA=0.0005;CIEND=-122,248;CIPOS=-287,84;END=62624329;HOMLEN=11;HOMSEQ=TTGCAGTGAGC;SOURCE=BreakDancer_6262293 GT:DS:GL:BD 0.07051282 0 1 62622944 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.682;LDAF=0.0267;AVGPOST=0.9824;RSQ=0.7696;ERATE=0.0007;THETA=0.0004;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 62622951 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.663;LDAF=0.0302;AVGPOST=0.9804;RSQ=0.7672;ERATE=0.0008;THETA=0.0007;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 62622957 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.634;LDAF=0.0081;AVGPOST=0.9932;RSQ=0.6990;ERATE=0.0003;THETA=0.0010;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62622962 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.634;LDAF=0.0078;AVGPOST=0.9935;RSQ=0.6948;ERATE=0.0003;THETA=0.0014;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62622994 . T TC 3076 PASS INDEL;BAVGPOST=0.924;BRSQ=0.852;LDAF=0.2718;AVGPOST=0.9532;RSQ=0.9284;ERATE=0.0011;THETA=0.0003;AC=609;AN=2184 GT:DS:GL:BD 0.27884614 0 1 62622996 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.950;LDAF=0.2978;AVGPOST=0.9818;RSQ=0.9725;ERATE=0.0007;THETA=0.0005;AC=653;AN=2184 GT:DS:GL:BD 0.29899266 0 1 62623008 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0098;AVGPOST=0.9983;RSQ=0.9337;ERATE=0.0003;THETA=0.0008;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62623044 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.844;LDAF=0.0022;AVGPOST=0.9986;RSQ=0.7427;ERATE=0.0003;THETA=0.0018;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62623133 . TGA T 771 PASS INDEL;BAVGPOST=0.995;BRSQ=0.843;LDAF=0.0222;AVGPOST=0.9957;RSQ=0.9263;ERATE=0.0004;THETA=0.0005;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 62623140 . CTT C 1174 PASS INDEL;BAVGPOST=0.995;BRSQ=0.844;LDAF=0.0200;AVGPOST=0.9979;RSQ=0.9583;ERATE=0.0004;THETA=0.0003;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 62623177 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0406;AVGPOST=0.9970;RSQ=0.9720;ERATE=0.0004;THETA=0.0022;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 62623469 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.747;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6983;ERATE=0.0004;THETA=0.0053;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62623523 . AAAAAT A 8469 PASS INDEL;BAVGPOST=0.796;BRSQ=0.635;LDAF=0.5278;AVGPOST=0.7846;RSQ=0.6272;ERATE=0.0589;THETA=0.0006;AC=1182;AN=2184 GT:DS:GL:BD 0.54120880 1 1 62623586 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0024;AVGPOST=0.9969;RSQ=0.5694;ERATE=0.0004;THETA=0.0033;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62623670 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0200;AVGPOST=0.9984;RSQ=0.9671;ERATE=0.0003;THETA=0.0006;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 62623780 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9403;ERATE=0.0003;THETA=0.0069;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62623784 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6441;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62623794 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0170;AVGPOST=0.9978;RSQ=0.9570;ERATE=0.0003;THETA=0.0013;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62623863 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.714;LDAF=0.0026;AVGPOST=0.9969;RSQ=0.5308;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62623892 . T TA 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4737;ERATE=0.0005;THETA=0.0076;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62623894 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9643;ERATE=0.0003;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62623920 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0112;AVGPOST=0.9983;RSQ=0.9350;ERATE=0.0003;THETA=0.0010;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 62623970 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.727;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.8085;ERATE=0.0003;THETA=0.0043;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62624114 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.902;LDAF=0.0249;AVGPOST=0.9934;RSQ=0.8986;ERATE=0.0011;THETA=0.0052;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 62624166 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.587;LDAF=0.0072;AVGPOST=0.9919;RSQ=0.5721;ERATE=0.0007;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62624187 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.571;LDAF=0.0171;AVGPOST=0.9910;RSQ=0.7925;ERATE=0.0010;THETA=0.0012;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62624192 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.726;LDAF=0.0081;AVGPOST=0.9975;RSQ=0.8676;ERATE=0.0003;THETA=0.0027;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62624201 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.647;LDAF=0.0036;AVGPOST=0.9961;RSQ=0.5556;ERATE=0.0008;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62624207 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.688;LDAF=0.0029;AVGPOST=0.9967;RSQ=0.5159;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62624208 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.705;LDAF=0.0041;AVGPOST=0.9959;RSQ=0.5695;ERATE=0.0009;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62624218 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.625;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.3889;ERATE=0.0006;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62624262 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.917;BRSQ=0.832;LDAF=0.6989;AVGPOST=0.9159;RSQ=0.8590;ERATE=0.0045;THETA=0.0006;AC=1553;AN=2184 GT:DS:GL:BD 0.71108061 1 1 62624266 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.929;LDAF=0.0205;AVGPOST=0.9931;RSQ=0.8739;ERATE=0.0007;THETA=0.0009;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 62624282 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0240;AVGPOST=0.9862;RSQ=0.7624;ERATE=0.0014;THETA=0.0005;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 62624317 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.557;LDAF=0.0070;AVGPOST=0.9935;RSQ=0.6099;ERATE=0.0006;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62624320 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.542;LDAF=0.0100;AVGPOST=0.9911;RSQ=0.6389;ERATE=0.0007;THETA=0.0014;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62624371 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0193;AVGPOST=0.9891;RSQ=0.7700;ERATE=0.0009;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62624379 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.334;LDAF=0.0125;AVGPOST=0.9845;RSQ=0.5052;ERATE=0.0015;THETA=0.0032;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62624392 . C CA 1419 PASS INDEL;BAVGPOST=0.574;BRSQ=0.322;LDAF=0.4329;AVGPOST=0.7008;RSQ=0.5287;ERATE=0.0217;THETA=0.0005;AC=959;AN=2184 GT:DS:GL:BD 0.43910256 0 1 62624402 rs67547775 AC A 14145 PASS INDEL;BAVGPOST=0.921;BRSQ=0.846;LDAF=0.7119;AVGPOST=0.9052;RSQ=0.8463;ERATE=0.0067;THETA=0.0008;AC=1606;AN=2184 GT:DS:GL:BD 0.73534799 1 1 62624419 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.302;LDAF=0.0152;AVGPOST=0.9798;RSQ=0.4760;ERATE=0.0016;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62624428 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.944;LDAF=0.7343;AVGPOST=0.9301;RSQ=0.8765;ERATE=0.0055;THETA=0.0012;AC=1629;AN=2184 GT:DS:GL:BD 0.74587911 1 1 62624508 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0123;AVGPOST=0.9972;RSQ=0.9095;ERATE=0.0004;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 62624565 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.864;LDAF=0.0061;AVGPOST=0.9962;RSQ=0.7563;ERATE=0.0005;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62624602 . CAA C 483 PASS INDEL;BAVGPOST=0.998;BRSQ=0.770;LDAF=0.0043;AVGPOST=0.9971;RSQ=0.7185;ERATE=0.0006;THETA=0.0042;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62624678 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0095;AVGPOST=0.9989;RSQ=0.9536;ERATE=0.0003;THETA=0.0038;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62624769 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0020;AVGPOST=0.9977;RSQ=0.5736;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62624813 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6046;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62624819 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9854;ERATE=0.0003;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62624873 . G GTTTA 1267 PASS INDEL;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9854;ERATE=0.0003;THETA=0.0011;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62624982 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0127;AVGPOST=0.9976;RSQ=0.9137;ERATE=0.0005;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62625011 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.447;LDAF=0.0020;AVGPOST=0.9973;RSQ=0.4866;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62625083 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5025;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62625338 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0031;AVGPOST=0.9980;RSQ=0.7209;ERATE=0.0006;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62625383 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.963;LDAF=0.0189;AVGPOST=0.9972;RSQ=0.9522;ERATE=0.0003;THETA=0.0035;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 62625424 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.847;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7163;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62625447 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0146;AVGPOST=0.9992;RSQ=0.9779;ERATE=0.0003;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62625498 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0024;AVGPOST=0.9992;RSQ=0.8569;ERATE=0.0004;THETA=0.0021;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62625533 . AT A 1774 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0098;AVGPOST=0.9989;RSQ=0.9557;ERATE=0.0003;THETA=0.0030;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62625537 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.734;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62625659 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0199;AVGPOST=0.9995;RSQ=0.9888;ERATE=0.0004;THETA=0.0004;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 62625679 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.661;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8397;ERATE=0.0003;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62625704 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.7845;ERATE=0.0005;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62625813 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6130;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62625860 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.626;LDAF=0.0041;AVGPOST=0.9977;RSQ=0.8053;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62625977 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.743;LDAF=0.0021;AVGPOST=0.9987;RSQ=0.7361;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62626044 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6493;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62626117 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0018;AVGPOST=0.9980;RSQ=0.6224;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62626223 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6904;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62626310 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62626355 . GTTAT G 259 PASS INDEL;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0043;AVGPOST=0.9966;RSQ=0.6593;ERATE=0.0005;THETA=0.0022;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62626371 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2993;AVGPOST=0.9977;RSQ=0.9963;ERATE=0.0003;THETA=0.0005;AC=655;AN=2184 GT:DS:GL:BD 0.29990843 0 1 62626536 . CTG C 205 PASS INDEL;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0032;AVGPOST=0.9991;RSQ=0.8684;ERATE=0.0003;THETA=0.0015;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62626603 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62626617 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62626662 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62626793 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62626812 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62626943 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0090;AVGPOST=0.9993;RSQ=0.9698;ERATE=0.0005;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62627033 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.981;LDAF=0.2969;AVGPOST=0.9917;RSQ=0.9860;ERATE=0.0009;THETA=0.0010;AC=648;AN=2184 GT:DS:GL:BD 0.29670331 0 1 62627071 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.633;LDAF=0.0030;AVGPOST=0.9956;RSQ=0.3670;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62627204 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2983;AVGPOST=0.9970;RSQ=0.9948;ERATE=0.0006;THETA=0.0003;AC=654;AN=2184 GT:DS:GL:BD 0.29945055 0 1 62627241 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.984;LDAF=0.2969;AVGPOST=0.9971;RSQ=0.9949;ERATE=0.0004;THETA=0.0007;AC=652;AN=2184 GT:DS:GL:BD 0.29853481 0 1 62627257 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.632;LDAF=0.0050;AVGPOST=0.9967;RSQ=0.7430;ERATE=0.0009;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62627275 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0017;AVGPOST=0.9979;RSQ=0.4976;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62627360 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7394;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62627383 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0097;AVGPOST=0.9989;RSQ=0.9610;ERATE=0.0003;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62627502 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0144;AVGPOST=0.9995;RSQ=0.9840;ERATE=0.0003;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62627565 . GAA G 125 PASS INDEL;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4808;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62627574 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8354;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62627675 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3370;AVGPOST=0.9968;RSQ=0.9950;ERATE=0.0003;THETA=0.0005;AC=736;AN=2184 GT:DS:GL:BD 0.33699635 0 1 62627705 . A AG 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62627706 . ATCT A 2305 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0143;AVGPOST=0.9997;RSQ=0.9912;ERATE=0.0003;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62627726 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.922;LDAF=0.0308;AVGPOST=0.9970;RSQ=0.9583;ERATE=0.0004;THETA=0.0009;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 62627902 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9331;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62627916 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0211;AVGPOST=0.9998;RSQ=0.9957;ERATE=0.0003;THETA=0.0006;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 62627990 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0121;AVGPOST=0.9986;RSQ=0.9567;ERATE=0.0003;THETA=0.0010;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 62628007 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0117;AVGPOST=0.9985;RSQ=0.9542;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62628011 . A ACATATT 1090 PASS INDEL;BAVGPOST=0.999;BRSQ=0.843;LDAF=0.0061;AVGPOST=0.9965;RSQ=0.7681;ERATE=0.0007;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62628019 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0112;AVGPOST=0.9995;RSQ=0.9834;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62628136 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.8015;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62628263 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62628302 . TG T 1051 PASS INDEL;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0070;AVGPOST=0.9980;RSQ=0.8953;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62628396 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0200;AVGPOST=0.9992;RSQ=0.9798;ERATE=0.0004;THETA=0.0003;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 62628406 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0150;AVGPOST=0.9983;RSQ=0.9536;ERATE=0.0003;THETA=0.0007;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62628500 rs71735704 TCC T 20356 PASS INDEL;BAVGPOST=0.988;BRSQ=0.981;LDAF=0.2914;AVGPOST=0.9892;RSQ=0.9834;ERATE=0.0011;THETA=0.0005;AC=636;AN=2184 GT:DS:GL:BD 0.29120880 0 1 62628650 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.646;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7394;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62628722 . AT A 1769 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0204;AVGPOST=0.9983;RSQ=0.9677;ERATE=0.0004;THETA=0.0007;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 62628724 . CA C 1823 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0199;AVGPOST=0.9991;RSQ=0.9788;ERATE=0.0004;THETA=0.0006;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 62628794 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6494;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62628894 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0023;AVGPOST=0.9979;RSQ=0.6301;ERATE=0.0004;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62628940 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.6383;ERATE=0.0010;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62629053 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0052;AVGPOST=0.9996;RSQ=0.9647;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62629151 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.672;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7679;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62629208 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0028;AVGPOST=0.9988;RSQ=0.8070;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62629249 . TATG T 78 PASS INDEL;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.3992;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62629319 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.853;LDAF=0.0074;AVGPOST=0.9971;RSQ=0.8530;ERATE=0.0005;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62629480 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6656;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62629484 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0022;AVGPOST=0.9976;RSQ=0.6009;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62629518 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.741;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5445;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62629548 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62629658 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0127;AVGPOST=0.9971;RSQ=0.9152;ERATE=0.0005;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62629689 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0036;AVGPOST=0.9991;RSQ=0.9087;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62629823 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0047;AVGPOST=0.9978;RSQ=0.8082;ERATE=0.0005;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62630047 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0097;AVGPOST=0.9991;RSQ=0.9642;ERATE=0.0004;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62630078 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8763;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62630134 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5932;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62630245 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6875;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62630255 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62630293 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0018;AVGPOST=0.9995;RSQ=0.8868;ERATE=0.0003;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62630297 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62630346 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5542;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62630362 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3094;AVGPOST=0.9988;RSQ=0.9980;ERATE=0.0004;THETA=0.0004;AC=677;AN=2184 GT:DS:GL:BD 0.30998167 0 1 62630389 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0039;AVGPOST=0.9986;RSQ=0.8606;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62630419 . A AACTT 932 PASS INDEL;BAVGPOST=0.996;BRSQ=0.731;LDAF=0.0056;AVGPOST=0.9983;RSQ=0.8755;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62630455 rs59082667 T TGGCATCCTTCCCCAAC 100330 PASS INDEL;BAVGPOST=0.993;BRSQ=0.987;LDAF=0.3583;AVGPOST=0.9830;RSQ=0.9760;ERATE=0.0014;THETA=0.0005;AC=784;AN=2184 GT:DS:GL:BD 0.35897437 0 1 62630645 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0232;AVGPOST=0.9989;RSQ=0.9835;ERATE=0.0004;THETA=0.0007;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 62630683 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.971;LDAF=0.0161;AVGPOST=0.9980;RSQ=0.9575;ERATE=0.0003;THETA=0.0002;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62630730 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0120;AVGPOST=0.9988;RSQ=0.9529;ERATE=0.0004;THETA=0.0023;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 62630878 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0200;AVGPOST=0.9993;RSQ=0.9894;ERATE=0.0003;THETA=0.0007;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 62630910 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0212;AVGPOST=0.9996;RSQ=0.9904;ERATE=0.0003;THETA=0.0005;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 62630956 . T TA 36005 PASS INDEL;BAVGPOST=0.984;BRSQ=0.971;LDAF=0.2891;AVGPOST=0.9898;RSQ=0.9853;ERATE=0.0005;THETA=0.0006;AC=634;AN=2184 GT:DS:GL:BD 0.29029304 0 1 62630965 . ATTCT A 33685 PASS INDEL;BAVGPOST=0.984;BRSQ=0.970;LDAF=0.2999;AVGPOST=0.9883;RSQ=0.9833;ERATE=0.0009;THETA=0.0011;AC=658;AN=2184 GT:DS:GL:BD 0.30128205 0 1 62630987 . T TC 16626 PASS INDEL;BAVGPOST=0.884;BRSQ=0.727;LDAF=0.3019;AVGPOST=0.8597;RSQ=0.7080;ERATE=0.0685;THETA=0.0005;AC=598;AN=2184 GT:DS:GL:BD 0.27380952 0 1 62631016 rs11390940 C CT 14028 PASS INDEL;BAVGPOST=0.947;BRSQ=0.904;LDAF=0.3242;AVGPOST=0.9131;RSQ=0.8634;ERATE=0.0194;THETA=0.0002;AC=697;AN=2184 GT:DS:GL:BD 0.31913918 0 1 62631126 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.982;LDAF=0.0285;AVGPOST=0.9985;RSQ=0.9803;ERATE=0.0004;THETA=0.0003;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 62631176 . A AT 31 PASS INDEL;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0023;AVGPOST=0.9968;RSQ=0.4274;ERATE=0.0005;THETA=0.0024;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62631236 . T TA 1760 PASS INDEL;BAVGPOST=0.934;BRSQ=0.414;LDAF=0.0614;AVGPOST=0.9369;RSQ=0.6076;ERATE=0.0018;THETA=0.0003;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 62631264 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6474;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62631350 . A AT 351 PASS INDEL;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0030;AVGPOST=0.9985;RSQ=0.8194;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62631359 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5726;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62631361 . AC A 248 PASS INDEL;BAVGPOST=0.999;BRSQ=0.696;LDAF=0.0036;AVGPOST=0.9971;RSQ=0.6812;ERATE=0.0008;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62631411 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.981;LDAF=0.0852;AVGPOST=0.9966;RSQ=0.9838;ERATE=0.0004;THETA=0.0005;AC=186;AN=2184 GT:DS:GL:BD 0.08516484 0 1 62631592 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0118;AVGPOST=0.9988;RSQ=0.9565;ERATE=0.0003;THETA=0.0019;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 62631610 . G GAA 39 PASS INDEL;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.6040;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62631699 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62631762 rs11351335 CA C 33865 PASS INDEL;BAVGPOST=0.995;BRSQ=0.990;LDAF=0.2949;AVGPOST=0.9968;RSQ=0.9944;ERATE=0.0006;THETA=0.0005;AC=645;AN=2184 GT:DS:GL:BD 0.29532966 0 1 62631784 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.601;LDAF=0.0018;AVGPOST=0.9977;RSQ=0.4793;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62631798 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9997;RSQ=0.9850;ERATE=0.0003;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62631842 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0211;AVGPOST=0.9998;RSQ=0.9957;ERATE=0.0003;THETA=0.0005;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 62631900 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0036;AVGPOST=0.9997;RSQ=0.9617;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62632001 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.748;LDAF=0.0088;AVGPOST=0.9937;RSQ=0.7166;ERATE=0.0007;THETA=0.0020;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62632107 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0040;AVGPOST=0.9990;RSQ=0.8855;ERATE=0.0005;THETA=0.0028;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62632119 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0045;AVGPOST=0.9980;RSQ=0.8157;ERATE=0.0005;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62632158 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.702;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6966;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62632186 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.816;LDAF=0.0290;AVGPOST=0.9806;RSQ=0.7153;ERATE=0.0058;THETA=0.0006;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 62632190 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.504;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6560;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62632248 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.7010;AVGPOST=0.9950;RSQ=0.9906;ERATE=0.0007;THETA=0.0002;AC=1535;AN=2184 GT:DS:GL:BD 0.70283884 1 1 62632335 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0005;AVGPOST=0.9990;RSQ=0.1127;ERATE=0.0004;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62632422 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.767;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8190;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62632571 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2236;AVGPOST=0.9990;RSQ=0.9979;ERATE=0.0003;THETA=0.0008;AC=487;AN=2184 GT:DS:GL:BD 0.22298534 0 1 62632654 . T TC 6 PASS INDEL;BAVGPOST=0.999;BRSQ=0.722;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7055;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62632687 . ATTC A 50 PASS INDEL;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8923;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62632749 . GTCTC G 75 PASS INDEL;BAVGPOST=0.998;BRSQ=0.731;LDAF=0.0053;AVGPOST=0.9961;RSQ=0.6830;ERATE=0.0008;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62632895 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.2880;AVGPOST=0.9945;RSQ=0.9912;ERATE=0.0005;THETA=0.0005;AC=631;AN=2184 GT:DS:GL:BD 0.28891942 0 1 62633031 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0208;AVGPOST=0.9984;RSQ=0.9698;ERATE=0.0004;THETA=0.0004;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 62633084 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.888;LDAF=0.0091;AVGPOST=0.9980;RSQ=0.9088;ERATE=0.0004;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62633178 . CAT C 22 PASS INDEL;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.7802;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62633262 rs113635487 CAAGATTTAAAA C 38965 PASS INDEL;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.1963;AVGPOST=0.9973;RSQ=0.9929;ERATE=0.0005;THETA=0.0004;AC=428;AN=2184 GT:DS:GL:BD 0.19597070 0 1 62633284 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.733;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6188;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62633322 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7921;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62633329 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0020;AVGPOST=0.9992;RSQ=0.8275;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62633417 rs59093060 C CCCT 41745 PASS INDEL;BAVGPOST=0.980;BRSQ=0.957;LDAF=0.2204;AVGPOST=0.9875;RSQ=0.9778;ERATE=0.0006;THETA=0.0003;AC=482;AN=2184 GT:DS:GL:BD 0.22069597 0 1 62633422 . C CT 8039 PASS INDEL;BAVGPOST=0.964;BRSQ=0.903;LDAF=0.1916;AVGPOST=0.9665;RSQ=0.9302;ERATE=0.0022;THETA=0.0005;AC=425;AN=2184 GT:DS:GL:BD 0.19459707 0 1 62633425 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6622;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62633517 . G GGCAT 16 PASS INDEL;BAVGPOST=0.999;BRSQ=0.753;LDAF=0.0029;AVGPOST=0.9960;RSQ=0.4396;ERATE=0.0007;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62633581 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2649;AVGPOST=0.9981;RSQ=0.9968;ERATE=0.0008;THETA=0.0035;AC=577;AN=2184 GT:DS:GL:BD 0.26419413 0 1 62633638 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6138;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62633721 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0142;AVGPOST=0.9999;RSQ=0.9971;ERATE=0.0003;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62633806 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.774;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8479;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62633914 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4979;ERATE=0.0005;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62634020 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2705;AVGPOST=0.9963;RSQ=0.9939;ERATE=0.0009;THETA=0.0005;AC=591;AN=2184 GT:DS:GL:BD 0.27060440 0 1 62634031 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62634043 . T TA 35 PASS INDEL;BAVGPOST=0.997;BRSQ=0.533;LDAF=0.0017;AVGPOST=0.9979;RSQ=0.5389;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62634070 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0097;AVGPOST=0.9983;RSQ=0.9353;ERATE=0.0003;THETA=0.0030;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62634131 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.9195;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62634137 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0219;AVGPOST=0.9991;RSQ=0.9813;ERATE=0.0003;THETA=0.0003;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 62634145 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4419;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62634281 rs35747619 GAC G 30910 PASS INDEL;BAVGPOST=0.989;BRSQ=0.975;LDAF=0.2263;AVGPOST=0.9859;RSQ=0.9754;ERATE=0.0027;THETA=0.0004;AC=489;AN=2184 GT:DS:GL:BD 0.22390109 0 1 62634303 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2598;AVGPOST=0.9977;RSQ=0.9960;ERATE=0.0004;THETA=0.0007;AC=568;AN=2184 GT:DS:GL:BD 0.26007327 0 1 62634320 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.7534;AVGPOST=0.9981;RSQ=0.9960;ERATE=0.0004;THETA=0.0004;AC=1645;AN=2184 GT:DS:GL:BD 0.75320512 1 1 62634344 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62634346 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0063;AVGPOST=0.9974;RSQ=0.8320;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62634557 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0124;AVGPOST=0.9978;RSQ=0.9283;ERATE=0.0004;THETA=0.0035;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 62634598 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0035;AVGPOST=0.9979;RSQ=0.7239;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62634700 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2616;AVGPOST=0.9989;RSQ=0.9980;ERATE=0.0003;THETA=0.0002;AC=572;AN=2184 GT:DS:GL:BD 0.26190478 0 1 62634750 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0030;AVGPOST=0.9993;RSQ=0.8864;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62634797 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4553;AVGPOST=0.9982;RSQ=0.9973;ERATE=0.0005;THETA=0.0009;AC=994;AN=2184 GT:DS:GL:BD 0.45512819 0 1 62634812 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9375;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62634834 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0658;AVGPOST=0.9976;RSQ=0.9857;ERATE=0.0003;THETA=0.0004;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 62634836 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0224;AVGPOST=0.9996;RSQ=0.9919;ERATE=0.0003;THETA=0.0006;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 62634989 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.976;LDAF=0.0253;AVGPOST=0.9978;RSQ=0.9684;ERATE=0.0004;THETA=0.0003;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 62635017 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0691;AVGPOST=0.9996;RSQ=0.9973;ERATE=0.0003;THETA=0.0008;AC=151;AN=2184 GT:DS:GL:BD 0.06913920 0 1 62635056 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0028;AVGPOST=0.9970;RSQ=0.5932;ERATE=0.0005;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62635058 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2842;AVGPOST=0.9995;RSQ=0.9991;ERATE=0.0003;THETA=0.0003;AC=622;AN=2184 GT:DS:GL:BD 0.28479853 0 1 62635081 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.4555;AVGPOST=0.9986;RSQ=0.9977;ERATE=0.0004;THETA=0.0004;AC=995;AN=2184 GT:DS:GL:BD 0.45558608 0 1 62635116 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2608;AVGPOST=0.9972;RSQ=0.9952;ERATE=0.0004;THETA=0.0002;AC=568;AN=2184 GT:DS:GL:BD 0.26007327 0 1 62635135 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.649;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7519;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62635160 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62635165 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5789;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62635213 . C CT 252 PASS INDEL;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8377;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62635246 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2876;AVGPOST=0.9975;RSQ=0.9959;ERATE=0.0003;THETA=0.0013;AC=630;AN=2184 GT:DS:GL:BD 0.28846154 0 1 62635314 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.939;LDAF=0.0107;AVGPOST=0.9995;RSQ=0.9795;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 62635676 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0019;AVGPOST=0.9975;RSQ=0.5761;ERATE=0.0005;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62635685 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7501;ERATE=0.0003;THETA=0.0024;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62635730 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0723;AVGPOST=0.9987;RSQ=0.9923;ERATE=0.0003;THETA=0.0005;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 62635784 rs112113596 CTTCT C 8696 PASS INDEL;BAVGPOST=0.984;BRSQ=0.962;LDAF=0.2432;AVGPOST=0.9918;RSQ=0.9836;ERATE=0.0005;THETA=0.0003;AC=536;AN=2184 GT:DS:GL:BD 0.24542125 0 1 62635788 rs72155254 TTTC T 21089 PASS INDEL;BAVGPOST=0.983;BRSQ=0.961;LDAF=0.2455;AVGPOST=0.9895;RSQ=0.9804;ERATE=0.0005;THETA=0.0025;AC=541;AN=2184 GT:DS:GL:BD 0.24771062 0 1 62635848 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.684;LDAF=0.0006;AVGPOST=0.9990;RSQ=0.3107;ERATE=0.0004;THETA=0.0014;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62635901 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0876;AVGPOST=0.9978;RSQ=0.9906;ERATE=0.0003;THETA=0.0009;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 62635922 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.985;LDAF=0.0429;AVGPOST=0.9975;RSQ=0.9767;ERATE=0.0003;THETA=0.0011;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 62635926 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0065;AVGPOST=0.9986;RSQ=0.9172;ERATE=0.0003;THETA=0.0044;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62635998 . T TGGTC 511 PASS INDEL;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6039;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62636082 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2626;AVGPOST=0.9960;RSQ=0.9920;ERATE=0.0005;THETA=0.0197;AC=574;AN=2184 GT:DS:GL:BD 0.26282051 0 1 62636086 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.474;LDAF=0.0033;AVGPOST=0.9957;RSQ=0.5699;ERATE=0.0005;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62636185 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7038;ERATE=0.0004;THETA=0.0044;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62636296 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0025;AVGPOST=0.9983;RSQ=0.7069;ERATE=0.0004;THETA=0.0066;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62636387 . C CA 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.675;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0004;THETA=0.0099;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62636459 . CT C 172 PASS INDEL;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6459;ERATE=0.0003;THETA=0.0076;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62636469 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6188;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62636476 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0025;AVGPOST=0.9985;RSQ=0.7506;ERATE=0.0003;THETA=0.0044;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62636658 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.972;LDAF=0.0513;AVGPOST=0.9948;RSQ=0.9607;ERATE=0.0004;THETA=0.0006;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 62636794 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.790;LDAF=0.0037;AVGPOST=0.9963;RSQ=0.5977;ERATE=0.0005;THETA=0.0075;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62636795 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.482;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6534;ERATE=0.0004;THETA=0.0053;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62636886 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.767;LDAF=0.0032;AVGPOST=0.9971;RSQ=0.6527;ERATE=0.0004;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62636888 . GAGA G 53 PASS INDEL;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0040;AVGPOST=0.9958;RSQ=0.6517;ERATE=0.0003;THETA=0.0024;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62636955 . T TA 42 PASS INDEL;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0039;AVGPOST=0.9996;RSQ=0.9514;ERATE=0.0003;THETA=0.0079;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62636956 . A AT 956 PASS INDEL;BAVGPOST=0.997;BRSQ=0.868;LDAF=0.0079;AVGPOST=0.9966;RSQ=0.8334;ERATE=0.0005;THETA=0.0103;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62636963 . GA G 1039 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9719;ERATE=0.0003;THETA=0.0090;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62636970 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9467;ERATE=0.0003;THETA=0.0015;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62637035 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5467;ERATE=0.0003;THETA=0.0090;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62637054 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.936;LDAF=0.0241;AVGPOST=0.9954;RSQ=0.9288;ERATE=0.0003;THETA=0.0092;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 62637062 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.940;LDAF=0.4194;AVGPOST=0.9619;RSQ=0.9376;ERATE=0.0038;THETA=0.0041;AC=913;AN=2184 GT:DS:GL:BD 0.41804031 0 1 62637066 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.730;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0084;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62637229 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6975;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62637236 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5437;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62637306 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7713;ERATE=0.0003;THETA=0.0088;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62637339 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.873;LDAF=0.0762;AVGPOST=0.9796;RSQ=0.9035;ERATE=0.0005;THETA=0.0024;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 62637343 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0072;AVGPOST=0.9993;RSQ=0.9551;ERATE=0.0004;THETA=0.0015;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62637365 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0029;AVGPOST=0.9986;RSQ=0.8128;ERATE=0.0003;THETA=0.0027;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62637537 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0022;AVGPOST=0.9988;RSQ=0.7499;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62637638 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.4999;AVGPOST=0.9857;RSQ=0.9793;ERATE=0.0007;THETA=0.0005;AC=1091;AN=2184 GT:DS:GL:BD 0.49954212 0 1 62637678 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0031;AVGPOST=0.9957;RSQ=0.4444;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62637836 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.965;LDAF=0.0115;AVGPOST=0.9979;RSQ=0.9179;ERATE=0.0004;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62637885 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0060;AVGPOST=0.9989;RSQ=0.9348;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62637993 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5632;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62637994 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2798;AVGPOST=0.9960;RSQ=0.9930;ERATE=0.0006;THETA=0.0004;AC=611;AN=2184 GT:DS:GL:BD 0.27976191 0 1 62638016 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8809;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62638291 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6555;ERATE=0.0004;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62638306 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.4520;AVGPOST=0.9960;RSQ=0.9942;ERATE=0.0004;THETA=0.0012;AC=987;AN=2184 GT:DS:GL:BD 0.45192307 0 1 62638339 rs10533831 CAGA C 19321 PASS INDEL;BAVGPOST=0.993;BRSQ=0.979;LDAF=0.1744;AVGPOST=0.9964;RSQ=0.9906;ERATE=0.0004;THETA=0.0004;AC=380;AN=2184 GT:DS:GL:BD 0.17399268 0 1 62638445 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0180;AVGPOST=0.9995;RSQ=0.9853;ERATE=0.0003;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 62638455 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62638548 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0060;AVGPOST=0.9994;RSQ=0.9636;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62638567 . GC G 81 PASS INDEL;BAVGPOST=0.997;BRSQ=0.810;LDAF=0.0103;AVGPOST=0.9888;RSQ=0.5751;ERATE=0.0012;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62638659 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.868;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.5795;ERATE=0.0006;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62638760 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0058;AVGPOST=0.9952;RSQ=0.6650;ERATE=0.0007;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62638767 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.972;LDAF=0.1731;AVGPOST=0.9961;RSQ=0.9890;ERATE=0.0009;THETA=0.0003;AC=378;AN=2184 GT:DS:GL:BD 0.17307693 0 1 62638852 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.882;LDAF=0.0154;AVGPOST=0.9938;RSQ=0.8360;ERATE=0.0005;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62638988 . C CA 6698 PASS INDEL;BAVGPOST=0.907;BRSQ=0.757;LDAF=0.2722;AVGPOST=0.8180;RSQ=0.6383;ERATE=0.0351;THETA=0.0006;AC=517;AN=2184 GT:DS:GL:BD 0.23672161 0 1 62639035 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.453;LDAF=0.0070;AVGPOST=0.9941;RSQ=0.6556;ERATE=0.0006;THETA=0.0016;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62639133 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.960;LDAF=0.0222;AVGPOST=0.9974;RSQ=0.9501;ERATE=0.0004;THETA=0.0010;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 62639177 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.650;LDAF=0.0071;AVGPOST=0.9918;RSQ=0.5472;ERATE=0.0010;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62639205 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.967;LDAF=0.0301;AVGPOST=0.9923;RSQ=0.8910;ERATE=0.0008;THETA=0.0002;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 62639252 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.690;LDAF=0.0119;AVGPOST=0.9888;RSQ=0.6572;ERATE=0.0006;THETA=0.0007;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 62639280 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.522;LDAF=0.0130;AVGPOST=0.9817;RSQ=0.4512;ERATE=0.0018;THETA=0.0015;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62639322 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.821;LDAF=0.0070;AVGPOST=0.9965;RSQ=0.7817;ERATE=0.0007;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62639328 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.946;BRSQ=0.906;LDAF=0.4324;AVGPOST=0.9607;RSQ=0.9415;ERATE=0.0026;THETA=0.0008;AC=954;AN=2184 GT:DS:GL:BD 0.43681318 0 1 62639335 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.945;LDAF=0.8535;AVGPOST=0.9807;RSQ=0.9449;ERATE=0.0013;THETA=0.0004;AC=1874;AN=2184 GT:DS:GL:BD 0.85805863 1 1 62639336 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.957;BRSQ=0.915;LDAF=0.2678;AVGPOST=0.9721;RSQ=0.9533;ERATE=0.0020;THETA=0.0006;AC=590;AN=2184 GT:DS:GL:BD 0.27014652 0 1 62639412 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.982;LDAF=0.4928;AVGPOST=0.9791;RSQ=0.9683;ERATE=0.0025;THETA=0.0002;AC=1086;AN=2184 GT:DS:GL:BD 0.49725273 0 1 62639430 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.854;LDAF=0.0142;AVGPOST=0.9948;RSQ=0.8469;ERATE=0.0005;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62639510 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0046;AVGPOST=0.9960;RSQ=0.6473;ERATE=0.0014;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62639641 . AAAAC A 1135 PASS INDEL;BAVGPOST=0.994;BRSQ=0.879;LDAF=0.0283;AVGPOST=0.9955;RSQ=0.9345;ERATE=0.0007;THETA=0.0006;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 62639663 . AAAAC A 2734 PASS INDEL;BAVGPOST=0.997;BRSQ=0.932;LDAF=0.0175;AVGPOST=0.9966;RSQ=0.9259;ERATE=0.0003;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 62639672 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0047;AVGPOST=0.9988;RSQ=0.9035;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62639679 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0244;AVGPOST=0.9995;RSQ=0.9915;ERATE=0.0003;THETA=0.0002;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 62639962 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.741;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6447;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62639992 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2823;AVGPOST=0.9977;RSQ=0.9959;ERATE=0.0005;THETA=0.0031;AC=618;AN=2184 GT:DS:GL:BD 0.28296703 0 1 62640001 rs34349685 CG C 25048 PASS INDEL;BAVGPOST=0.985;BRSQ=0.967;LDAF=0.3015;AVGPOST=0.9779;RSQ=0.9604;ERATE=0.0037;THETA=0.0009;AC=659;AN=2184 GT:DS:GL:BD 0.30173993 0 1 62640124 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0069;AVGPOST=0.9990;RSQ=0.9388;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62640131 . AAAC A 1325 PASS INDEL;BAVGPOST=0.994;BRSQ=0.857;LDAF=0.0212;AVGPOST=0.9877;RSQ=0.7810;ERATE=0.0040;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62640152 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0121;AVGPOST=0.9978;RSQ=0.9221;ERATE=0.0004;THETA=0.0012;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 62640210 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.5024;AVGPOST=0.9908;RSQ=0.9864;ERATE=0.0017;THETA=0.0005;AC=1100;AN=2184 GT:DS:GL:BD 0.50366300 1 1 62640239 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0046;AVGPOST=0.9972;RSQ=0.7904;ERATE=0.0003;THETA=0.0029;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62640403 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0154;AVGPOST=0.9973;RSQ=0.9377;ERATE=0.0005;THETA=0.0009;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62640404 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0025;AVGPOST=0.9987;RSQ=0.7655;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62640449 . GGAA G 2119 PASS INDEL;BAVGPOST=0.949;BRSQ=0.794;LDAF=0.1661;AVGPOST=0.9128;RSQ=0.7470;ERATE=0.0080;THETA=0.0005;AC=337;AN=2184 GT:DS:GL:BD 0.15430403 0 1 62640566 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62640627 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62640650 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.903;LDAF=0.9803;AVGPOST=0.9984;RSQ=0.9639;ERATE=0.0003;THETA=0.0001;AC=2142;AN=2184 GT:DS:GL:BD 0.98076922 1 1 62640674 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.8696;AVGPOST=0.9978;RSQ=0.9928;ERATE=0.0004;THETA=0.0002;AC=1900;AN=2184 GT:DS:GL:BD 0.86996335 1 1 62640693 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9997;RSQ=0.9810;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62640774 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.640;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5467;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62640815 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.974;LDAF=0.0303;AVGPOST=0.9976;RSQ=0.9728;ERATE=0.0003;THETA=0.0005;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 62640873 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0205;AVGPOST=0.9996;RSQ=0.9915;ERATE=0.0003;THETA=0.0002;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 62640908 . ATCC A 10911 PASS INDEL;BAVGPOST=0.993;BRSQ=0.958;LDAF=0.0685;AVGPOST=0.9985;RSQ=0.9899;ERATE=0.0003;THETA=0.0006;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 62640988 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0231;AVGPOST=0.9963;RSQ=0.9525;ERATE=0.0003;THETA=0.0003;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 62641092 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.975;LDAF=0.0510;AVGPOST=0.9972;RSQ=0.9777;ERATE=0.0005;THETA=0.0004;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 62641188 . T TTC 82 PASS INDEL;BAVGPOST=0.999;BRSQ=0.538;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6612;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62641246 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9463;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62641298 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9449;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62641340 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6094;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62641384 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0060;AVGPOST=0.9993;RSQ=0.9582;ERATE=0.0003;THETA=0.0017;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62641441 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62641484 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2427;AVGPOST=0.9974;RSQ=0.9951;ERATE=0.0003;THETA=0.0003;AC=530;AN=2184 GT:DS:GL:BD 0.24267399 0 1 62641507 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.9312;ERATE=0.0003;THETA=0.0056;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62641639 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0215;AVGPOST=0.9995;RSQ=0.9919;ERATE=0.0003;THETA=0.0003;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 62641723 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0285;AVGPOST=0.9994;RSQ=0.9891;ERATE=0.0003;THETA=0.0009;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 62641760 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0475;AVGPOST=0.9984;RSQ=0.9862;ERATE=0.0004;THETA=0.0029;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 62641783 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.706;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6483;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62641907 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0354;AVGPOST=0.9983;RSQ=0.9832;ERATE=0.0003;THETA=0.0064;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 62641932 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.971;LDAF=0.2365;AVGPOST=0.9884;RSQ=0.9795;ERATE=0.0006;THETA=0.0009;AC=520;AN=2184 GT:DS:GL:BD 0.23809524 0 1 62641971 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.797;LDAF=0.0129;AVGPOST=0.9964;RSQ=0.8981;ERATE=0.0003;THETA=0.0059;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 62642004 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.809;LDAF=0.0061;AVGPOST=0.9981;RSQ=0.8655;ERATE=0.0007;THETA=0.0028;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62642014 . GC G 4563 PASS INDEL;BAVGPOST=0.989;BRSQ=0.932;LDAF=0.0768;AVGPOST=0.9944;RSQ=0.9689;ERATE=0.0006;THETA=0.0008;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 62642053 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.977;LDAF=0.0759;AVGPOST=0.9963;RSQ=0.9791;ERATE=0.0005;THETA=0.0017;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 62642065 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0297;AVGPOST=0.9967;RSQ=0.9511;ERATE=0.0005;THETA=0.0004;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 62642149 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6431;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62642163 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.981;LDAF=0.8574;AVGPOST=0.9922;RSQ=0.9757;ERATE=0.0009;THETA=0.0004;AC=1876;AN=2184 GT:DS:GL:BD 0.85897434 1 1 62642188 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.5146;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62642203 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.985;LDAF=0.0560;AVGPOST=0.9973;RSQ=0.9829;ERATE=0.0003;THETA=0.0033;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 62642209 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.705;LDAF=0.0035;AVGPOST=0.9987;RSQ=0.8529;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62642243 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.680;LDAF=0.0011;AVGPOST=0.9984;RSQ=0.4183;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62642244 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0037;AVGPOST=0.9948;RSQ=0.4355;ERATE=0.0009;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62642252 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.1394;AVGPOST=0.9954;RSQ=0.9860;ERATE=0.0005;THETA=0.0002;AC=302;AN=2184 GT:DS:GL:BD 0.13827839 0 1 62642298 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0058;AVGPOST=0.9981;RSQ=0.8534;ERATE=0.0005;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62642299 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.950;LDAF=0.1317;AVGPOST=0.9873;RSQ=0.9597;ERATE=0.0011;THETA=0.0082;AC=286;AN=2184 GT:DS:GL:BD 0.13095239 0 1 62642383 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.962;LDAF=0.0436;AVGPOST=0.9974;RSQ=0.9791;ERATE=0.0005;THETA=0.0006;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 62642384 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.977;LDAF=0.3956;AVGPOST=0.9783;RSQ=0.9672;ERATE=0.0015;THETA=0.0076;AC=868;AN=2184 GT:DS:GL:BD 0.39743590 0 1 62642399 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.945;LDAF=0.0081;AVGPOST=0.9932;RSQ=0.6962;ERATE=0.0012;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62642591 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.939;LDAF=0.0056;AVGPOST=0.9987;RSQ=0.9269;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62642593 rs10558878 TGA T 16344 PASS INDEL;BAVGPOST=0.994;BRSQ=0.985;LDAF=0.1990;AVGPOST=0.9937;RSQ=0.9845;ERATE=0.0005;THETA=0.0007;AC=434;AN=2184 GT:DS:GL:BD 0.19871795 0 1 62642596 . GAGTT G 341 PASS INDEL;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0054;AVGPOST=0.9976;RSQ=0.8351;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62642597 . AGT A 1093 PASS INDEL;BAVGPOST=0.971;BRSQ=0.910;LDAF=0.1917;AVGPOST=0.9850;RSQ=0.9613;ERATE=0.0015;THETA=0.0008;AC=418;AN=2184 GT:DS:GL:BD 0.19139194 0 1 62642599 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0442;AVGPOST=0.9981;RSQ=0.9861;ERATE=0.0003;THETA=0.0004;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 62642650 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0122;AVGPOST=0.9993;RSQ=0.9730;ERATE=0.0003;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62642652 . A ACG 121 PASS INDEL;BAVGPOST=0.998;BRSQ=0.812;LDAF=0.0144;AVGPOST=0.9845;RSQ=0.5597;ERATE=0.0038;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62642732 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7566;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62642869 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.835;LDAF=0.0054;AVGPOST=0.9975;RSQ=0.8197;ERATE=0.0006;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62642887 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.700;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5589;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62642972 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0032;AVGPOST=0.9981;RSQ=0.7774;ERATE=0.0005;THETA=0.0037;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62643069 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.6608;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62643152 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.899;LDAF=0.0079;AVGPOST=0.9979;RSQ=0.8877;ERATE=0.0005;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62643201 rs113494783 CAAAACA C 27764 PASS INDEL;BAVGPOST=0.955;BRSQ=0.920;LDAF=0.3737;AVGPOST=0.9692;RSQ=0.9521;ERATE=0.0013;THETA=0.0005;AC=824;AN=2184 GT:DS:GL:BD 0.37728938 0 1 62643211 . AC A 117 PASS INDEL;BAVGPOST=0.857;BRSQ=0.271;LDAF=0.1200;AVGPOST=0.8606;RSQ=0.4711;ERATE=0.0080;THETA=0.0007;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 62643220 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.942;LDAF=0.1396;AVGPOST=0.9888;RSQ=0.9659;ERATE=0.0003;THETA=0.0006;AC=311;AN=2184 GT:DS:GL:BD 0.14239927 0 1 62643263 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5974;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62643274 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7199;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62643373 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.8590;ERATE=0.0003;THETA=0.0032;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62643387 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5320;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62643429 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.931;LDAF=0.0214;AVGPOST=0.9963;RSQ=0.9289;ERATE=0.0003;THETA=0.0003;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 62643441 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0147;AVGPOST=0.9984;RSQ=0.9509;ERATE=0.0003;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 62643516 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.643;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.3973;ERATE=0.0003;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62643587 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.992;LDAF=0.5418;AVGPOST=0.9910;RSQ=0.9866;ERATE=0.0016;THETA=0.0005;AC=1186;AN=2184 GT:DS:GL:BD 0.54304028 1 1 62643628 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.962;LDAF=0.0301;AVGPOST=0.9951;RSQ=0.9421;ERATE=0.0003;THETA=0.0004;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 62643688 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5734;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62643702 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9267;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62643822 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0276;AVGPOST=0.9985;RSQ=0.9801;ERATE=0.0003;THETA=0.0003;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 62644019 rs67842627 GTTGC G 1808 PASS INDEL;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0150;AVGPOST=0.9987;RSQ=0.9649;ERATE=0.0003;THETA=0.0004;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62644078 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0035;AVGPOST=0.9993;RSQ=0.9133;ERATE=0.0003;THETA=0.0029;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62644118 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.994;LDAF=0.6871;AVGPOST=0.9942;RSQ=0.9904;ERATE=0.0005;THETA=0.0003;AC=1504;AN=2184 GT:DS:GL:BD 0.68864471 1 1 62644138 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5520;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62644139 . TG T 611 PASS INDEL;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0064;AVGPOST=0.9979;RSQ=0.8713;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62644172 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.0753;AVGPOST=0.9979;RSQ=0.9877;ERATE=0.0004;THETA=0.0005;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 62644173 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.910;LDAF=0.0034;AVGPOST=0.9994;RSQ=0.9182;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62644201 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0022;AVGPOST=0.9986;RSQ=0.7655;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62644237 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.761;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7946;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62644247 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.982;LDAF=0.6216;AVGPOST=0.9929;RSQ=0.9900;ERATE=0.0007;THETA=0.0072;AC=1360;AN=2184 GT:DS:GL:BD 0.62271065 1 1 62644265 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.718;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5129;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62644363 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.910;LDAF=0.0033;AVGPOST=0.9995;RSQ=0.9242;ERATE=0.0003;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62644645 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.896;LDAF=0.0162;AVGPOST=0.9950;RSQ=0.8841;ERATE=0.0007;THETA=0.0008;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62644756 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.815;LDAF=0.0077;AVGPOST=0.9972;RSQ=0.8437;ERATE=0.0009;THETA=0.0051;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62644764 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0060;AVGPOST=0.9991;RSQ=0.9371;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62645003 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1313;AVGPOST=0.9965;RSQ=0.9874;ERATE=0.0003;THETA=0.0013;AC=287;AN=2184 GT:DS:GL:BD 0.13141026 0 1 62645051 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0193;AVGPOST=0.9998;RSQ=0.9944;ERATE=0.0003;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 62645052 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.919;LDAF=0.0130;AVGPOST=0.9962;RSQ=0.8938;ERATE=0.0003;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 62645062 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62645374 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4856;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62645409 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0101;AVGPOST=0.9989;RSQ=0.9631;ERATE=0.0004;THETA=0.0027;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62645419 . TTTTA T 88 PASS INDEL;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5073;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62645479 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8600;ERATE=0.0003;THETA=0.0028;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62645484 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.986;LDAF=0.8528;AVGPOST=0.9925;RSQ=0.9783;ERATE=0.0008;THETA=0.0019;AC=1866;AN=2184 GT:DS:GL:BD 0.85439563 1 1 62645522 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5156;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62645585 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62645597 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0043;AVGPOST=0.9991;RSQ=0.9096;ERATE=0.0006;THETA=0.0045;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62645623 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0198;AVGPOST=0.9987;RSQ=0.9736;ERATE=0.0003;THETA=0.0009;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 62645785 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62645878 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.979;LDAF=0.0614;AVGPOST=0.9973;RSQ=0.9828;ERATE=0.0004;THETA=0.0039;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 62645912 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7063;ERATE=0.0004;THETA=0.0118;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62646090 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62646141 . C CA 1274 PASS INDEL;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0119;AVGPOST=0.9995;RSQ=0.9819;ERATE=0.0003;THETA=0.0035;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62646143 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0019;AVGPOST=0.9994;RSQ=0.8683;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62646152 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0049;AVGPOST=0.9994;RSQ=0.9544;ERATE=0.0003;THETA=0.0016;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62646182 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.981;LDAF=0.1908;AVGPOST=0.9926;RSQ=0.9820;ERATE=0.0004;THETA=0.0024;AC=418;AN=2184 GT:DS:GL:BD 0.19139194 0 1 62646184 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6612;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62646210 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.1798;AVGPOST=0.9939;RSQ=0.9845;ERATE=0.0003;THETA=0.0100;AC=391;AN=2184 GT:DS:GL:BD 0.17902930 0 1 62646272 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7329;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62646279 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.710;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7548;ERATE=0.0003;THETA=0.0126;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62646288 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0074;AVGPOST=0.9996;RSQ=0.9744;ERATE=0.0003;THETA=0.0044;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62646309 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0080;AVGPOST=0.9993;RSQ=0.9619;ERATE=0.0003;THETA=0.0063;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62646336 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0056;AVGPOST=0.9986;RSQ=0.9213;ERATE=0.0003;THETA=0.0086;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62646362 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0036;AVGPOST=0.9997;RSQ=0.9598;ERATE=0.0007;THETA=0.0133;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62646432 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6305;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62646586 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.958;LDAF=0.2303;AVGPOST=0.9809;RSQ=0.9573;ERATE=0.0021;THETA=0.0120;AC=497;AN=2184 GT:DS:GL:BD 0.22756410 0 1 62646602 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0034;AVGPOST=0.9986;RSQ=0.8273;ERATE=0.0003;THETA=0.0098;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62646676 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.979;LDAF=0.5446;AVGPOST=0.9791;RSQ=0.9693;ERATE=0.0011;THETA=0.0064;AC=1189;AN=2184 GT:DS:GL:BD 0.54441392 1 1 62646706 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.751;LDAF=0.0096;AVGPOST=0.9910;RSQ=0.6429;ERATE=0.0020;THETA=0.0057;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62646750 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6976;ERATE=0.0003;THETA=0.0053;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62646758 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.984;LDAF=0.6808;AVGPOST=0.9856;RSQ=0.9750;ERATE=0.0008;THETA=0.0007;AC=1491;AN=2184 GT:DS:GL:BD 0.68269229 1 1 62646887 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6347;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62646948 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0035;AVGPOST=0.9975;RSQ=0.7621;ERATE=0.0003;THETA=0.0030;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62646980 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.773;LDAF=0.0032;AVGPOST=0.9997;RSQ=0.9597;ERATE=0.0003;THETA=0.0015;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62647053 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7907;ERATE=0.0003;THETA=0.0080;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62647092 . T TC 140 PASS INDEL;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0007;AVGPOST=0.9990;RSQ=0.4138;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62647162 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0183;AVGPOST=0.9991;RSQ=0.9779;ERATE=0.0003;THETA=0.0009;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 62647253 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0004;AVGPOST=0.9991;RSQ=0.0966;ERATE=0.0003;THETA=0.0100;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62647283 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6678;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62647332 . GAAGT G 542 PASS INDEL;BAVGPOST=0.997;BRSQ=0.805;LDAF=0.0078;AVGPOST=0.9991;RSQ=0.9519;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62647418 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9286;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62647633 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2254;AVGPOST=0.9958;RSQ=0.9901;ERATE=0.0005;THETA=0.0006;AC=492;AN=2184 GT:DS:GL:BD 0.22527473 0 1 62647682 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1570;AVGPOST=0.9978;RSQ=0.9934;ERATE=0.0004;THETA=0.0010;AC=342;AN=2184 GT:DS:GL:BD 0.15659341 0 1 62647846 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0124;AVGPOST=0.9990;RSQ=0.9651;ERATE=0.0004;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 62647906 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.2840;AVGPOST=0.9952;RSQ=0.9911;ERATE=0.0005;THETA=0.0003;AC=622;AN=2184 GT:DS:GL:BD 0.28479853 0 1 62647911 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62647959 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=1.0000;RSQ=0.9921;ERATE=0.0003;THETA=0.0018;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62647990 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0107;AVGPOST=0.9996;RSQ=0.9820;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 62647999 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6910;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62648031 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9083;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62648035 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8333;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62648069 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62648105 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7701;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62648273 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8551;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62648304 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0111;AVGPOST=0.9988;RSQ=0.9588;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62648330 . T TA 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62648401 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0078;AVGPOST=0.9992;RSQ=0.9602;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62648468 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2325;AVGPOST=0.9959;RSQ=0.9909;ERATE=0.0006;THETA=0.0008;AC=508;AN=2184 GT:DS:GL:BD 0.23260073 0 1 62648496 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.9104;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62648501 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0069;AVGPOST=0.9978;RSQ=0.8689;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62648542 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.681;LDAF=0.0024;AVGPOST=0.9986;RSQ=0.7732;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62648630 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0521;AVGPOST=0.9966;RSQ=0.9724;ERATE=0.0007;THETA=0.0013;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 62648818 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0051;AVGPOST=0.9985;RSQ=0.8917;ERATE=0.0004;THETA=0.0030;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62648947 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0124;AVGPOST=0.9999;RSQ=0.9946;ERATE=0.0003;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 62648968 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0074;AVGPOST=0.9997;RSQ=0.9825;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62649072 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0037;AVGPOST=0.9982;RSQ=0.8276;ERATE=0.0004;THETA=0.0019;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62649102 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.848;LDAF=0.0086;AVGPOST=0.9980;RSQ=0.9141;ERATE=0.0003;THETA=0.0019;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62649103 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.758;LDAF=0.0069;AVGPOST=0.9964;RSQ=0.8038;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62649147 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0600;AVGPOST=0.9977;RSQ=0.9845;ERATE=0.0003;THETA=0.0003;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 62649148 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.878;LDAF=0.0063;AVGPOST=0.9964;RSQ=0.7597;ERATE=0.0007;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62649155 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0192;AVGPOST=0.9980;RSQ=0.9607;ERATE=0.0004;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 62649158 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.7160;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62649178 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6434;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62649186 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0247;AVGPOST=0.9989;RSQ=0.9821;ERATE=0.0003;THETA=0.0003;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 62649189 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.881;LDAF=0.0141;AVGPOST=0.9959;RSQ=0.8843;ERATE=0.0003;THETA=0.0010;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62649198 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0033;AVGPOST=0.9983;RSQ=0.8143;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62649211 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.5565;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62649218 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7423;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62649220 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8858;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62649287 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6526;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62649331 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.743;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5750;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62649395 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7701;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62649492 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0064;AVGPOST=0.9981;RSQ=0.8785;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62649549 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.859;LDAF=0.0372;AVGPOST=0.9877;RSQ=0.8762;ERATE=0.0003;THETA=0.0008;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 62649550 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0789;AVGPOST=0.9992;RSQ=0.9957;ERATE=0.0003;THETA=0.0008;AC=173;AN=2184 GT:DS:GL:BD 0.07921246 0 1 62649582 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.2779;AVGPOST=0.9971;RSQ=0.9950;ERATE=0.0005;THETA=0.0002;AC=610;AN=2184 GT:DS:GL:BD 0.27930403 0 1 62649725 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0114;AVGPOST=0.9996;RSQ=0.9837;ERATE=0.0003;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 62649791 rs112525129 CA C 4390 PASS INDEL;BAVGPOST=0.992;BRSQ=0.936;LDAF=0.0561;AVGPOST=0.9953;RSQ=0.9695;ERATE=0.0005;THETA=0.0026;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 62649840 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0192;AVGPOST=0.9990;RSQ=0.9763;ERATE=0.0004;THETA=0.0003;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 62649882 rs61415056 T TTTC 8939 PASS INDEL;BAVGPOST=0.982;BRSQ=0.933;LDAF=0.1466;AVGPOST=0.9865;RSQ=0.9632;ERATE=0.0004;THETA=0.0003;AC=319;AN=2184 GT:DS:GL:BD 0.14606227 0 1 62649883 rs61415056 T TTC 10184 PASS INDEL;BAVGPOST=0.983;BRSQ=0.938;LDAF=0.1471;AVGPOST=0.9850;RSQ=0.9589;ERATE=0.0005;THETA=0.0003;AC=319;AN=2184 GT:DS:GL:BD 0.14606227 0 1 62649884 rs61415056 T TC 9597 PASS INDEL;BAVGPOST=0.983;BRSQ=0.938;LDAF=0.1475;AVGPOST=0.9867;RSQ=0.9640;ERATE=0.0004;THETA=0.0020;AC=321;AN=2184 GT:DS:GL:BD 0.14697802 0 1 62649969 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.710;LDAF=0.0085;AVGPOST=0.9951;RSQ=0.7853;ERATE=0.0004;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62649990 . TCTC T 374 PASS INDEL;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0073;AVGPOST=0.9967;RSQ=0.8246;ERATE=0.0004;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62650035 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0029;AVGPOST=0.9974;RSQ=0.6866;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62650037 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.967;LDAF=0.2582;AVGPOST=0.9955;RSQ=0.9912;ERATE=0.0006;THETA=0.0004;AC=565;AN=2184 GT:DS:GL:BD 0.25869963 0 1 62650045 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.970;LDAF=0.4312;AVGPOST=0.9946;RSQ=0.9906;ERATE=0.0008;THETA=0.0002;AC=944;AN=2184 GT:DS:GL:BD 0.43223444 0 1 62650059 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.711;LDAF=0.0148;AVGPOST=0.9915;RSQ=0.7824;ERATE=0.0006;THETA=0.0030;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62650317 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4148;AVGPOST=0.9982;RSQ=0.9968;ERATE=0.0004;THETA=0.0004;AC=906;AN=2184 GT:DS:GL:BD 0.41483516 0 1 62650453 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0069;AVGPOST=0.9981;RSQ=0.8904;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62650643 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.480;LDAF=0.0024;AVGPOST=0.9963;RSQ=0.4018;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62650749 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2601;AVGPOST=0.9959;RSQ=0.9921;ERATE=0.0011;THETA=0.0003;AC=568;AN=2184 GT:DS:GL:BD 0.26007327 0 1 62650787 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7174;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62650789 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0045;AVGPOST=0.9976;RSQ=0.7961;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62650821 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.917;LDAF=0.0204;AVGPOST=0.9975;RSQ=0.9515;ERATE=0.0006;THETA=0.0003;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 62650826 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.606;LDAF=0.0097;AVGPOST=0.9928;RSQ=0.7041;ERATE=0.0004;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62650853 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1550;AVGPOST=0.9989;RSQ=0.9965;ERATE=0.0004;THETA=0.0008;AC=337;AN=2184 GT:DS:GL:BD 0.15430403 0 1 62650881 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0100;AVGPOST=0.9959;RSQ=0.8534;ERATE=0.0004;THETA=0.0011;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62650893 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6709;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62650931 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0027;AVGPOST=0.9981;RSQ=0.6759;ERATE=0.0004;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62651044 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.8957;ERATE=0.0003;THETA=0.0023;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62651060 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0035;AVGPOST=0.9991;RSQ=0.8983;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62651213 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0136;AVGPOST=0.9951;RSQ=0.8555;ERATE=0.0009;THETA=0.0002;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 62651256 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0019;AVGPOST=0.9982;RSQ=0.5875;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62651390 . TAATA T 866 PASS INDEL;BAVGPOST=0.996;BRSQ=0.742;LDAF=0.0085;AVGPOST=0.9965;RSQ=0.8282;ERATE=0.0008;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62651415 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.896;LDAF=0.0116;AVGPOST=0.9986;RSQ=0.9464;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 62651515 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.2829;ERATE=0.0003;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62651566 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0035;AVGPOST=0.9984;RSQ=0.8481;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62651573 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.961;LDAF=0.0912;AVGPOST=0.9936;RSQ=0.9701;ERATE=0.0004;THETA=0.0006;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 62651578 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1609;AVGPOST=0.9963;RSQ=0.9892;ERATE=0.0006;THETA=0.0007;AC=348;AN=2184 GT:DS:GL:BD 0.15934066 0 1 62651613 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.6907;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62651634 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2571;AVGPOST=0.9936;RSQ=0.9869;ERATE=0.0013;THETA=0.0002;AC=560;AN=2184 GT:DS:GL:BD 0.25641027 0 1 62651905 . GTA G 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.5327;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62651953 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1600;AVGPOST=0.9986;RSQ=0.9959;ERATE=0.0004;THETA=0.0003;AC=348;AN=2184 GT:DS:GL:BD 0.15934066 0 1 62651967 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7642;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62652121 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.972;LDAF=0.1600;AVGPOST=0.9949;RSQ=0.9849;ERATE=0.0007;THETA=0.0004;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 62652180 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.786;LDAF=0.0043;AVGPOST=0.9971;RSQ=0.7260;ERATE=0.0005;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62652249 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.593;LDAF=0.0047;AVGPOST=0.9954;RSQ=0.5598;ERATE=0.0011;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62652358 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4158;AVGPOST=0.9968;RSQ=0.9946;ERATE=0.0004;THETA=0.0005;AC=906;AN=2184 GT:DS:GL:BD 0.41483516 0 1 62652502 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.615;LDAF=0.0080;AVGPOST=0.9926;RSQ=0.6489;ERATE=0.0010;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62652513 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.792;LDAF=0.0095;AVGPOST=0.9920;RSQ=0.6565;ERATE=0.0007;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62652543 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0062;AVGPOST=0.9969;RSQ=0.7947;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62652594 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.980;LDAF=0.0170;AVGPOST=0.9981;RSQ=0.9533;ERATE=0.0005;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62652956 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5172;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62653037 . CGTTT C 4829 PASS INDEL;BAVGPOST=0.968;BRSQ=0.816;LDAF=0.0965;AVGPOST=0.9862;RSQ=0.9362;ERATE=0.0009;THETA=0.0005;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 62653053 . TG T 490 PASS INDEL;BAVGPOST=0.966;BRSQ=0.761;LDAF=0.0842;AVGPOST=0.9859;RSQ=0.9253;ERATE=0.0014;THETA=0.0004;AC=186;AN=2184 GT:DS:GL:BD 0.08516484 0 1 62653063 . T TG 4599 PASS INDEL;BAVGPOST=0.964;BRSQ=0.888;LDAF=0.2026;AVGPOST=0.9362;RSQ=0.8442;ERATE=0.0098;THETA=0.0007;AC=431;AN=2184 GT:DS:GL:BD 0.19734432 0 1 62653065 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.922;LDAF=0.1844;AVGPOST=0.9614;RSQ=0.9011;ERATE=0.0113;THETA=0.0008;AC=390;AN=2184 GT:DS:GL:BD 0.17857143 0 1 62653103 . CAG C 152 PASS INDEL;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0023;AVGPOST=0.9968;RSQ=0.4485;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62653138 . GGCGA G 227 PASS INDEL;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0031;AVGPOST=0.9991;RSQ=0.8655;ERATE=0.0006;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62653164 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.697;LDAF=0.0118;AVGPOST=0.9836;RSQ=0.5241;ERATE=0.0014;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62653198 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0197;AVGPOST=0.9991;RSQ=0.9770;ERATE=0.0005;THETA=0.0006;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 62653225 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.655;LDAF=0.0042;AVGPOST=0.9985;RSQ=0.8432;ERATE=0.0003;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62653237 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5489;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62653292 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.813;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7406;ERATE=0.0003;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62653341 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0576;AVGPOST=0.9990;RSQ=0.9924;ERATE=0.0003;THETA=0.0002;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 62653369 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0077;AVGPOST=0.9997;RSQ=0.9830;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62653451 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.871;LDAF=0.0143;AVGPOST=0.9941;RSQ=0.8415;ERATE=0.0005;THETA=0.0034;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62653456 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0085;AVGPOST=0.9981;RSQ=0.9111;ERATE=0.0004;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62653485 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0042;AVGPOST=0.9964;RSQ=0.6742;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62653511 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8553;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62653543 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4774;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62653645 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0071;AVGPOST=0.9944;RSQ=0.7071;ERATE=0.0004;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62653838 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0082;AVGPOST=0.9990;RSQ=0.9463;ERATE=0.0004;THETA=0.0009;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62653890 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0022;AVGPOST=0.9966;RSQ=0.4527;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62653920 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7631;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62654001 MERGED_DEL_2_3759 G . . SV;BAVGPOST=0.996;BRSQ=0.984;LDAF=0.1255;AVGPOST=0.9896;RSQ=0.9664;ERATE=0.0005;THETA=0.0007;CIEND=-178,192;CIPOS=-156,215;END=62657150;SOURCE=CNVnator_62654001_62657150;SVTYPE=DEL;AC=272;AN GT:DS:GL:BD 0.12454212 0 1 62654110 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0033;AVGPOST=0.9968;RSQ=0.6547;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62654200 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0070;AVGPOST=0.9977;RSQ=0.8565;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62654250 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0094;AVGPOST=0.9986;RSQ=0.9550;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62654254 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7540;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62654391 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9324;ERATE=0.0003;THETA=0.0001;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62654397 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0423;AVGPOST=0.9993;RSQ=0.9918;ERATE=0.0003;THETA=0.0003;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 62654411 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6295;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62654482 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0047;AVGPOST=0.9988;RSQ=0.8845;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62654511 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0044;AVGPOST=0.9975;RSQ=0.7442;ERATE=0.0006;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62654662 MERGED_DEL_2_3760 ATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGGTCGATCTCCTGACCTCGTGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCTCCCTCATTTTTTCTTGTCTCCCCCTCCTGCAGCTTCCTGATCACTAGCACAGAGGACCCAGCGCTG A . . SV;BAVGPOST=0.957;BRSQ=0.754;LDAF=0.0962;AVGPOST=0.9676;RSQ=0.8613;ERATE=0.0004;THETA=0.0005;CIEND=-178,192;CIPOS=-156,215;END=62657844;HOMLEN=27;HOMSEQ=TTTTTAGTAGAGACGGGGTTTCACCGT;SOURCE=CN GT:DS:GL:BD 0.09935898 0 1 62654727 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0124;AVGPOST=0.9941;RSQ=0.8236;ERATE=0.0006;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 62654737 MERGED_DEL_2_3761 GGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCTCCCTCATTTTTTCTTGTCTCCCCCTCCTGCAGCTTCCTGATCACTAGCACAGAGGACCCAGCGCTGAGACTGTCTAAAGCCGTAGGATAGTCATGGAGAATTCACCATTACATCTGCCAGAAAGAGCAATGTATGGCTCTG G . . SV;BAVGPOST=0.996;BRSQ=0.987;LDAF=0.1287;AVGPOST=0.9910;RSQ=0.9715;ERATE=0.0007;THETA=0.0005;CIEND=-17,33;CIPOS=-18,19;END=62657155;HOMLEN=39;HOMSEQ=GCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGC;S GT:DS:GL:BD 0.12683150 0 1 62654760 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.905;LDAF=0.0442;AVGPOST=0.9947;RSQ=0.9603;ERATE=0.0004;THETA=0.0004;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 62654775 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0082;AVGPOST=0.9962;RSQ=0.8157;ERATE=0.0006;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62654805 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0067;AVGPOST=0.9984;RSQ=0.8909;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62654806 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0036;AVGPOST=0.9995;RSQ=0.9343;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62654820 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.954;BRSQ=0.931;LDAF=0.6433;AVGPOST=0.9612;RSQ=0.9443;ERATE=0.0005;THETA=0.0003;AC=1405;AN=2184 GT:DS:GL:BD 0.64331502 1 1 62654959 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.941;LDAF=0.0211;AVGPOST=0.9979;RSQ=0.9664;ERATE=0.0003;THETA=0.0003;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 62654996 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.950;LDAF=0.0569;AVGPOST=0.9931;RSQ=0.9652;ERATE=0.0003;THETA=0.0004;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 62655115 . ATC A 278 PASS INDEL;BAVGPOST=0.998;BRSQ=0.698;LDAF=0.0080;AVGPOST=0.9935;RSQ=0.6742;ERATE=0.0006;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62655130 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8656;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62655177 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0056;AVGPOST=0.9969;RSQ=0.7799;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62655180 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0034;AVGPOST=0.9987;RSQ=0.8925;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62655214 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.913;LDAF=0.1606;AVGPOST=0.9746;RSQ=0.9358;ERATE=0.0015;THETA=0.0002;AC=338;AN=2184 GT:DS:GL:BD 0.15476191 0 1 62655361 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.876;LDAF=0.0195;AVGPOST=0.9944;RSQ=0.8829;ERATE=0.0005;THETA=0.0006;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 62655429 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.920;LDAF=0.1578;AVGPOST=0.9891;RSQ=0.9685;ERATE=0.0008;THETA=0.0005;AC=338;AN=2184 GT:DS:GL:BD 0.15476191 0 1 62655459 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.462;LDAF=0.0104;AVGPOST=0.9830;RSQ=0.3018;ERATE=0.0017;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62655460 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.506;LDAF=0.0088;AVGPOST=0.9877;RSQ=0.4443;ERATE=0.0010;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62655819 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0021;AVGPOST=0.9981;RSQ=0.5896;ERATE=0.0007;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62655820 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.661;LDAF=0.0022;AVGPOST=0.9966;RSQ=0.4248;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62655823 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0081;AVGPOST=0.9994;RSQ=0.9650;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62655833 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0035;AVGPOST=0.9964;RSQ=0.6082;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62656024 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0026;AVGPOST=0.9966;RSQ=0.4189;ERATE=0.0007;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62656126 . CA C 1262 PASS INDEL;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0229;AVGPOST=0.9959;RSQ=0.9227;ERATE=0.0008;THETA=0.0004;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 62656174 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.980;LDAF=0.1632;AVGPOST=0.9963;RSQ=0.9915;ERATE=0.0003;THETA=0.0002;AC=353;AN=2184 GT:DS:GL:BD 0.16163003 0 1 62656238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.947;LDAF=0.0534;AVGPOST=0.9929;RSQ=0.9624;ERATE=0.0003;THETA=0.0002;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 62656273 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6976;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62656285 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6992;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62656296 . ATC A 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0019;AVGPOST=0.9982;RSQ=0.5650;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62656309 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.7117;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62656433 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62656447 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8620;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62656475 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0008;AVGPOST=0.9998;RSQ=0.8876;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62656489 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62656527 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8336;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62656590 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.950;LDAF=0.0569;AVGPOST=0.9931;RSQ=0.9656;ERATE=0.0003;THETA=0.0003;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 62656602 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5520;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62656612 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.980;LDAF=0.1632;AVGPOST=0.9966;RSQ=0.9920;ERATE=0.0003;THETA=0.0003;AC=353;AN=2184 GT:DS:GL:BD 0.16163003 0 1 62656704 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62656774 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.961;LDAF=0.0666;AVGPOST=0.9978;RSQ=0.9866;ERATE=0.0003;THETA=0.0003;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 62656890 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5887;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62656901 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.949;LDAF=0.0564;AVGPOST=0.9916;RSQ=0.9560;ERATE=0.0004;THETA=0.0003;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 62656956 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.900;LDAF=0.0649;AVGPOST=0.9776;RSQ=0.8869;ERATE=0.0007;THETA=0.0003;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 62656994 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62657020 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.936;LDAF=0.1713;AVGPOST=0.9769;RSQ=0.9444;ERATE=0.0007;THETA=0.0006;AC=360;AN=2184 GT:DS:GL:BD 0.16483517 0 1 62657078 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.894;LDAF=0.0173;AVGPOST=0.9956;RSQ=0.8949;ERATE=0.0005;THETA=0.0030;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62657105 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.557;LDAF=0.0053;AVGPOST=0.9941;RSQ=0.5421;ERATE=0.0007;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62657117 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.922;LDAF=0.3152;AVGPOST=0.9675;RSQ=0.9462;ERATE=0.0012;THETA=0.0004;AC=667;AN=2184 GT:DS:GL:BD 0.30540293 0 1 62657124 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0048;AVGPOST=0.9968;RSQ=0.7490;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62657149 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.549;LDAF=0.0506;AVGPOST=0.9528;RSQ=0.6417;ERATE=0.0030;THETA=0.0002;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 62657150 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.637;LDAF=0.0162;AVGPOST=0.9891;RSQ=0.7411;ERATE=0.0009;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62657179 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0080;AVGPOST=0.9989;RSQ=0.9416;ERATE=0.0004;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62657282 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0018;AVGPOST=0.9995;RSQ=0.8876;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62657468 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0017;AVGPOST=0.9987;RSQ=0.6756;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62657530 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4158;AVGPOST=0.9976;RSQ=0.9957;ERATE=0.0007;THETA=0.0002;AC=908;AN=2184 GT:DS:GL:BD 0.41575092 0 1 62657531 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0029;AVGPOST=0.9989;RSQ=0.8608;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62657552 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0065;AVGPOST=0.9997;RSQ=0.9802;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62657568 . A AT 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6523;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62657640 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62657714 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.936;LDAF=0.0426;AVGPOST=0.9957;RSQ=0.9578;ERATE=0.0005;THETA=0.0002;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 62657728 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1620;AVGPOST=0.9962;RSQ=0.9889;ERATE=0.0008;THETA=0.0006;AC=352;AN=2184 GT:DS:GL:BD 0.16117217 0 1 62657737 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.966;LDAF=0.0656;AVGPOST=0.9987;RSQ=0.9910;ERATE=0.0005;THETA=0.0014;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 62657870 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.489;LDAF=0.0032;AVGPOST=0.9953;RSQ=0.3706;ERATE=0.0009;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62657916 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.853;BRSQ=0.681;LDAF=0.5619;AVGPOST=0.8087;RSQ=0.6479;ERATE=0.0810;THETA=0.0004;AC=1275;AN=2184 GT:DS:GL:BD 0.58379120 1 1 62658019 . G GT 663 PASS INDEL;BAVGPOST=0.992;BRSQ=0.831;LDAF=0.0278;AVGPOST=0.9855;RSQ=0.7924;ERATE=0.0036;THETA=0.0005;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 62658027 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0024;AVGPOST=0.9978;RSQ=0.6692;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62658137 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0105;AVGPOST=0.9990;RSQ=0.9560;ERATE=0.0006;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62658147 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.709;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4880;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62658161 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.741;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.3781;ERATE=0.0006;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62658174 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0160;AVGPOST=0.9984;RSQ=0.9620;ERATE=0.0003;THETA=0.0002;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62658313 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.961;LDAF=0.0391;AVGPOST=0.9981;RSQ=0.9780;ERATE=0.0005;THETA=0.0006;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 62658324 . T TTTTTG 1988 PASS INDEL;BAVGPOST=0.983;BRSQ=0.846;LDAF=0.0664;AVGPOST=0.9790;RSQ=0.8828;ERATE=0.0009;THETA=0.0004;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 62658325 . T TTTTG 2055 PASS INDEL;BAVGPOST=0.984;BRSQ=0.854;LDAF=0.0579;AVGPOST=0.9853;RSQ=0.9026;ERATE=0.0009;THETA=0.0004;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 62658328 . T TG 660 PASS INDEL;BAVGPOST=0.987;BRSQ=0.845;LDAF=0.0496;AVGPOST=0.9910;RSQ=0.9280;ERATE=0.0009;THETA=0.0004;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 62658389 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0164;AVGPOST=0.9981;RSQ=0.9528;ERATE=0.0003;THETA=0.0002;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62658422 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1600;AVGPOST=0.9980;RSQ=0.9943;ERATE=0.0003;THETA=0.0002;AC=348;AN=2184 GT:DS:GL:BD 0.15934066 0 1 62658454 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5402;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62658523 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.698;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7673;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62658621 . A AT 533 PASS INDEL;BAVGPOST=0.998;BRSQ=0.855;LDAF=0.0058;AVGPOST=0.9988;RSQ=0.9146;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62658647 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.953;LDAF=0.0666;AVGPOST=0.9954;RSQ=0.9750;ERATE=0.0003;THETA=0.0003;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 62658655 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0033;AVGPOST=0.9968;RSQ=0.6379;ERATE=0.0005;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62658780 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.4181;AVGPOST=0.9982;RSQ=0.9970;ERATE=0.0003;THETA=0.0003;AC=913;AN=2184 GT:DS:GL:BD 0.41804031 0 1 62658851 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6208;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62658931 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9642;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62659250 . C CA 24554 PASS INDEL;BAVGPOST=0.992;BRSQ=0.982;LDAF=0.2598;AVGPOST=0.9909;RSQ=0.9830;ERATE=0.0023;THETA=0.0002;AC=571;AN=2184 GT:DS:GL:BD 0.26144689 0 1 62659299 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0653;AVGPOST=0.9993;RSQ=0.9956;ERATE=0.0003;THETA=0.0003;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 62659398 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.549;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4162;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62659399 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.801;LDAF=0.0050;AVGPOST=0.9965;RSQ=0.7391;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62659593 . TC T 957 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0094;AVGPOST=0.9986;RSQ=0.9459;ERATE=0.0004;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62659715 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0053;AVGPOST=0.9970;RSQ=0.7818;ERATE=0.0005;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62659729 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.779;LDAF=0.0410;AVGPOST=0.9820;RSQ=0.8483;ERATE=0.0006;THETA=0.0003;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 62659755 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.542;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6745;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62659779 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.899;LDAF=0.0097;AVGPOST=0.9976;RSQ=0.9012;ERATE=0.0003;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62659850 . AAAAAG A 12921 PASS INDEL;BAVGPOST=0.936;BRSQ=0.856;LDAF=0.2845;AVGPOST=0.9027;RSQ=0.8301;ERATE=0.0155;THETA=0.0003;AC=607;AN=2184 GT:DS:GL:BD 0.27793041 0 1 62659899 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0093;AVGPOST=0.9996;RSQ=0.9801;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62660090 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0753;AVGPOST=0.9990;RSQ=0.9946;ERATE=0.0003;THETA=0.0023;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 62660111 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8260;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62660229 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62660236 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9370;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62660242 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0037;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62660272 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7077;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62660348 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0041;AVGPOST=0.9992;RSQ=0.9054;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62660408 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.630;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4871;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62660421 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.741;LDAF=0.0041;AVGPOST=0.9968;RSQ=0.6764;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62660523 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1606;AVGPOST=0.9973;RSQ=0.9929;ERATE=0.0004;THETA=0.0004;AC=349;AN=2184 GT:DS:GL:BD 0.15979853 0 1 62660525 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0065;AVGPOST=0.9988;RSQ=0.9265;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62660661 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.965;LDAF=0.0471;AVGPOST=0.9859;RSQ=0.8847;ERATE=0.0009;THETA=0.0003;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 62660669 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.971;LDAF=0.7171;AVGPOST=0.9755;RSQ=0.9542;ERATE=0.0013;THETA=0.0002;AC=1561;AN=2184 GT:DS:GL:BD 0.71474361 1 1 62660783 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.887;LDAF=0.0389;AVGPOST=0.9963;RSQ=0.9561;ERATE=0.0009;THETA=0.0003;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 62660810 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.876;LDAF=0.0438;AVGPOST=0.9869;RSQ=0.8797;ERATE=0.0012;THETA=0.0003;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 62660812 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.518;LDAF=0.0106;AVGPOST=0.9905;RSQ=0.6416;ERATE=0.0009;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62660815 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.650;LDAF=0.0030;AVGPOST=0.9974;RSQ=0.6112;ERATE=0.0008;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62660928 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0383;AVGPOST=0.9985;RSQ=0.9818;ERATE=0.0005;THETA=0.0006;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 62660991 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0189;AVGPOST=0.9994;RSQ=0.9855;ERATE=0.0003;THETA=0.0003;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 62661208 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1559;AVGPOST=0.9922;RSQ=0.9781;ERATE=0.0013;THETA=0.0002;AC=337;AN=2184 GT:DS:GL:BD 0.15430403 0 1 62661223 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2375;AVGPOST=0.9877;RSQ=0.9750;ERATE=0.0011;THETA=0.0003;AC=515;AN=2184 GT:DS:GL:BD 0.23580585 0 1 62661228 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0267;AVGPOST=0.9986;RSQ=0.9771;ERATE=0.0005;THETA=0.0004;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 62661355 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0275;AVGPOST=0.9989;RSQ=0.9822;ERATE=0.0004;THETA=0.0003;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 62661356 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.937;LDAF=0.6947;AVGPOST=0.9499;RSQ=0.9118;ERATE=0.0072;THETA=0.0004;AC=1548;AN=2184 GT:DS:GL:BD 0.70879120 1 1 62661394 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7166;AVGPOST=0.9871;RSQ=0.9763;ERATE=0.0010;THETA=0.0006;AC=1569;AN=2184 GT:DS:GL:BD 0.71840662 1 1 62661427 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0195;AVGPOST=0.9994;RSQ=0.9851;ERATE=0.0004;THETA=0.0003;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 62661444 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1626;AVGPOST=0.9923;RSQ=0.9809;ERATE=0.0008;THETA=0.0046;AC=354;AN=2184 GT:DS:GL:BD 0.16208792 0 1 62661482 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.963;LDAF=0.0416;AVGPOST=0.9909;RSQ=0.9126;ERATE=0.0008;THETA=0.0015;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 62661505 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.947;LDAF=0.5306;AVGPOST=0.9256;RSQ=0.8900;ERATE=0.0138;THETA=0.0006;AC=1179;AN=2184 GT:DS:GL:BD 0.53983516 1 1 62661526 . C CT 5703 PASS INDEL;BAVGPOST=0.839;BRSQ=0.603;LDAF=0.6887;AVGPOST=0.7612;RSQ=0.5696;ERATE=0.0543;THETA=0.0005;AC=1643;AN=2184 GT:DS:GL:BD 0.75228935 1 1 62661528 rs67486601 T TG 40922 PASS INDEL;BAVGPOST=0.996;BRSQ=0.980;LDAF=0.8632;AVGPOST=0.9719;RSQ=0.9111;ERATE=0.0014;THETA=0.0002;AC=1895;AN=2184 GT:DS:GL:BD 0.86767399 1 1 62661593 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.702;LDAF=0.0036;AVGPOST=0.9940;RSQ=0.4192;ERATE=0.0005;THETA=0.0045;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62661622 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.958;BRSQ=0.906;LDAF=0.6840;AVGPOST=0.9218;RSQ=0.8574;ERATE=0.0132;THETA=0.0002;AC=1530;AN=2184 GT:DS:GL:BD 0.70054942 1 1 62661728 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.582;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5066;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62661792 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7207;AVGPOST=0.9961;RSQ=0.9926;ERATE=0.0005;THETA=0.0007;AC=1571;AN=2184 GT:DS:GL:BD 0.71932232 1 1 62661822 . AT A 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.720;LDAF=0.0021;AVGPOST=0.9973;RSQ=0.4829;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62661942 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0261;AVGPOST=0.9998;RSQ=0.9965;ERATE=0.0003;THETA=0.0006;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 62661982 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0034;AVGPOST=0.9979;RSQ=0.7618;ERATE=0.0005;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62662024 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7574;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62662027 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0268;AVGPOST=0.9993;RSQ=0.9882;ERATE=0.0004;THETA=0.0002;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 62662039 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.809;LDAF=0.0131;AVGPOST=0.9954;RSQ=0.8792;ERATE=0.0003;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 62662110 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0078;AVGPOST=0.9989;RSQ=0.9492;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62662120 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0035;AVGPOST=0.9973;RSQ=0.6742;ERATE=0.0013;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62662156 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1572;AVGPOST=0.9967;RSQ=0.9896;ERATE=0.0003;THETA=0.0006;AC=343;AN=2184 GT:DS:GL:BD 0.15705128 0 1 62662259 . TG T 58 PASS INDEL;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0046;AVGPOST=0.9948;RSQ=0.4946;ERATE=0.0016;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62662261 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0043;AVGPOST=0.9963;RSQ=0.6985;ERATE=0.0005;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62662265 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0046;AVGPOST=0.9965;RSQ=0.7243;ERATE=0.0008;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62662295 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0094;AVGPOST=0.9958;RSQ=0.8338;ERATE=0.0004;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62662392 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0266;AVGPOST=0.9988;RSQ=0.9787;ERATE=0.0005;THETA=0.0004;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 62662746 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8552;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62662752 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2630;AVGPOST=0.9949;RSQ=0.9909;ERATE=0.0006;THETA=0.0004;AC=574;AN=2184 GT:DS:GL:BD 0.26282051 0 1 62662760 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0085;AVGPOST=0.9994;RSQ=0.9692;ERATE=0.0003;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62662850 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.7143;AVGPOST=0.9823;RSQ=0.9686;ERATE=0.0014;THETA=0.0066;AC=1562;AN=2184 GT:DS:GL:BD 0.71520144 1 1 62662855 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0029;AVGPOST=0.9975;RSQ=0.6376;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62662868 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.597;LDAF=0.0060;AVGPOST=0.9971;RSQ=0.8025;ERATE=0.0006;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62662929 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0045;AVGPOST=0.9963;RSQ=0.6580;ERATE=0.0005;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62663014 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0028;AVGPOST=0.9979;RSQ=0.6655;ERATE=0.0009;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62663064 . AT A 557 PASS INDEL;BAVGPOST=0.969;BRSQ=0.684;LDAF=0.0581;AVGPOST=0.9831;RSQ=0.8748;ERATE=0.0011;THETA=0.0003;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 62663166 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.518;LDAF=0.0026;AVGPOST=0.9965;RSQ=0.4391;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62663257 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0059;AVGPOST=0.9918;RSQ=0.4747;ERATE=0.0007;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62663370 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0022;AVGPOST=0.9978;RSQ=0.5846;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62663420 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.904;LDAF=0.0130;AVGPOST=0.9970;RSQ=0.9057;ERATE=0.0006;THETA=0.0002;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 62663661 . CATAG C 44 PASS INDEL;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4487;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62663756 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0071;AVGPOST=0.9992;RSQ=0.9447;ERATE=0.0003;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62663787 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.1598;AVGPOST=0.9984;RSQ=0.9955;ERATE=0.0003;THETA=0.0003;AC=347;AN=2184 GT:DS:GL:BD 0.15888278 0 1 62663811 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7860;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62663815 . TCTC T 334 PASS INDEL;BAVGPOST=0.998;BRSQ=0.941;LDAF=0.0176;AVGPOST=0.9972;RSQ=0.9286;ERATE=0.0005;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 62663816 . CTCCTT C 2616 PASS INDEL;BAVGPOST=0.998;BRSQ=0.941;LDAF=0.0177;AVGPOST=0.9971;RSQ=0.9383;ERATE=0.0004;THETA=0.0019;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 62663868 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2615;AVGPOST=0.9968;RSQ=0.9935;ERATE=0.0006;THETA=0.0004;AC=572;AN=2184 GT:DS:GL:BD 0.26190478 0 1 62663894 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0262;AVGPOST=0.9985;RSQ=0.9801;ERATE=0.0004;THETA=0.0035;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 62663947 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0068;AVGPOST=0.9988;RSQ=0.9265;ERATE=0.0004;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62663995 rs71301242 C CA 1181 PASS INDEL;BAVGPOST=0.962;BRSQ=0.585;LDAF=0.0744;AVGPOST=0.9210;RSQ=0.5322;ERATE=0.0195;THETA=0.0010;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 62664031 . GT G 440 PASS INDEL;BAVGPOST=0.998;BRSQ=0.764;LDAF=0.0064;AVGPOST=0.9952;RSQ=0.6834;ERATE=0.0006;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62664109 . GT G 93 PASS INDEL;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0032;AVGPOST=0.9987;RSQ=0.8116;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62664159 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.975;LDAF=0.0661;AVGPOST=0.9963;RSQ=0.9741;ERATE=0.0004;THETA=0.0002;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 62664161 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.938;LDAF=0.0168;AVGPOST=0.9978;RSQ=0.9459;ERATE=0.0003;THETA=0.0028;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 62664186 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.872;LDAF=0.0081;AVGPOST=0.9986;RSQ=0.9328;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62664233 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0226;AVGPOST=0.9952;RSQ=0.9244;ERATE=0.0003;THETA=0.0004;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 62664281 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.881;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9302;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62664345 . TAAAG T 115 PASS INDEL;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4893;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62664355 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0041;AVGPOST=0.9988;RSQ=0.8779;ERATE=0.0003;THETA=0.0050;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62664372 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62664452 rs67205488 ACCT A 27412 PASS INDEL;BAVGPOST=0.995;BRSQ=0.988;LDAF=0.2636;AVGPOST=0.9885;RSQ=0.9756;ERATE=0.0003;THETA=0.0002;AC=570;AN=2184 GT:DS:GL:BD 0.26098901 0 1 62664504 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9882;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62664593 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0031;AVGPOST=0.9974;RSQ=0.6963;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62664776 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6706;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62664837 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.0862;AVGPOST=0.9978;RSQ=0.9899;ERATE=0.0004;THETA=0.0003;AC=187;AN=2184 GT:DS:GL:BD 0.08562271 0 1 62664839 . ATATT A 851 PASS INDEL;BAVGPOST=0.996;BRSQ=0.851;LDAF=0.0109;AVGPOST=0.9963;RSQ=0.8733;ERATE=0.0004;THETA=0.0008;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 62664879 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62664950 . AC A 73 PASS INDEL;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0041;AVGPOST=0.9973;RSQ=0.7417;ERATE=0.0004;THETA=0.0041;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62665026 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.827;LDAF=0.0112;AVGPOST=0.9953;RSQ=0.8244;ERATE=0.0009;THETA=0.0010;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62665042 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.714;LDAF=0.0029;AVGPOST=0.9983;RSQ=0.7945;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62665098 . AG A 13 PASS INDEL;BAVGPOST=0.999;BRSQ=0.569;LDAF=0.0023;AVGPOST=0.9971;RSQ=0.4514;ERATE=0.0006;THETA=0.0033;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62665119 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.962;LDAF=0.7718;AVGPOST=0.9687;RSQ=0.9329;ERATE=0.0028;THETA=0.0006;AC=1692;AN=2184 GT:DS:GL:BD 0.77472526 1 1 62665267 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7853;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62665269 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0372;AVGPOST=0.9993;RSQ=0.9915;ERATE=0.0003;THETA=0.0002;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 62665342 . CCTGT C 5997 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0329;AVGPOST=0.9980;RSQ=0.9755;ERATE=0.0004;THETA=0.0003;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 62665420 . AAC A 50 PASS INDEL;BAVGPOST=0.999;BRSQ=0.835;LDAF=0.0030;AVGPOST=0.9988;RSQ=0.8226;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62665433 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.674;LDAF=0.0078;AVGPOST=0.9934;RSQ=0.6570;ERATE=0.0031;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62665457 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0023;AVGPOST=0.9986;RSQ=0.7823;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62665458 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62665544 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0340;AVGPOST=0.9981;RSQ=0.9823;ERATE=0.0003;THETA=0.0003;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 62665572 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0025;AVGPOST=0.9984;RSQ=0.7571;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62665593 . CCTGA C 43 PASS INDEL;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6140;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62665603 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0070;AVGPOST=0.9979;RSQ=0.8915;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62665681 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6745;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62665685 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0359;AVGPOST=0.9989;RSQ=0.9866;ERATE=0.0004;THETA=0.0002;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 62665804 . GTATA G 145 PASS INDEL;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7863;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62665824 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.863;LDAF=0.0022;AVGPOST=0.9990;RSQ=0.8079;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62665839 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4738;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62665941 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0958;AVGPOST=0.9977;RSQ=0.9903;ERATE=0.0003;THETA=0.0005;AC=210;AN=2184 GT:DS:GL:BD 0.09615385 0 1 62665942 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.750;LDAF=0.0028;AVGPOST=0.9970;RSQ=0.5969;ERATE=0.0005;THETA=0.0038;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62666073 . CCT C 105 PASS INDEL;BAVGPOST=0.998;BRSQ=0.679;LDAF=0.0067;AVGPOST=0.9950;RSQ=0.7328;ERATE=0.0006;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62666121 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.758;LDAF=0.0040;AVGPOST=0.9957;RSQ=0.5879;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62666142 . CATAATGTATATT C 1407 PASS INDEL;BAVGPOST=0.998;BRSQ=0.906;LDAF=0.0139;AVGPOST=0.9948;RSQ=0.8598;ERATE=0.0005;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62666183 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6004;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62666183 . TTATG T 350 PASS INDEL;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.6166;ERATE=0.0011;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62666191 . TTA T 45 PASS INDEL;BAVGPOST=0.997;BRSQ=0.618;LDAF=0.0029;AVGPOST=0.9974;RSQ=0.6637;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62666394 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8761;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62666441 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.5671;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62666503 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.531;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5561;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62666518 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.7014;AVGPOST=0.9935;RSQ=0.9878;ERATE=0.0006;THETA=0.0004;AC=1531;AN=2184 GT:DS:GL:BD 0.70100731 1 1 62666523 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0558;AVGPOST=0.9968;RSQ=0.9797;ERATE=0.0004;THETA=0.0003;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 62666609 . C CT 208 PASS INDEL;BAVGPOST=0.998;BRSQ=0.829;LDAF=0.0080;AVGPOST=0.9930;RSQ=0.6811;ERATE=0.0011;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62666646 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0038;AVGPOST=0.9995;RSQ=0.9352;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62666745 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.968;LDAF=0.8797;AVGPOST=0.9952;RSQ=0.9791;ERATE=0.0007;THETA=0.0006;AC=1925;AN=2184 GT:DS:GL:BD 0.88141024 1 1 62666749 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.960;LDAF=0.1334;AVGPOST=0.9965;RSQ=0.9872;ERATE=0.0005;THETA=0.0002;AC=290;AN=2184 GT:DS:GL:BD 0.13278389 0 1 62666836 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0083;AVGPOST=0.9965;RSQ=0.8416;ERATE=0.0007;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62666967 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.0865;AVGPOST=0.9979;RSQ=0.9905;ERATE=0.0004;THETA=0.0004;AC=188;AN=2184 GT:DS:GL:BD 0.08608059 0 1 62666975 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.6076;ERATE=0.0003;THETA=0.0066;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62667039 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0023;AVGPOST=0.9984;RSQ=0.7150;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62667085 . T TA 22 PASS INDEL;BAVGPOST=0.993;BRSQ=0.429;LDAF=0.0107;AVGPOST=0.9862;RSQ=0.5301;ERATE=0.0026;THETA=0.0019;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62667160 . C CG 841 PASS INDEL;BAVGPOST=0.884;BRSQ=0.419;LDAF=0.1179;AVGPOST=0.8799;RSQ=0.5482;ERATE=0.0152;THETA=0.0003;AC=189;AN=2184 GT:DS:GL:BD 0.08653846 0 1 62667161 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.956;BRSQ=0.907;LDAF=0.3099;AVGPOST=0.9784;RSQ=0.9649;ERATE=0.0016;THETA=0.0014;AC=679;AN=2184 GT:DS:GL:BD 0.31089744 0 1 62667191 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.785;LDAF=0.9796;AVGPOST=0.9888;RSQ=0.7865;ERATE=0.0013;THETA=0.0004;AC=2145;AN=2184 GT:DS:GL:BD 0.98214287 1 1 62667202 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.8057;ERATE=0.0003;THETA=0.0025;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62667265 . CTCT C 80 PASS INDEL;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0021;AVGPOST=0.9990;RSQ=0.7795;ERATE=0.0003;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62667339 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62667342 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0144;AVGPOST=0.9995;RSQ=0.9832;ERATE=0.0003;THETA=0.0008;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62667380 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.0713;AVGPOST=0.9952;RSQ=0.9731;ERATE=0.0007;THETA=0.0002;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 62667564 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62667599 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62667600 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0038;AVGPOST=0.9986;RSQ=0.8586;ERATE=0.0004;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62667649 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7767;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62667841 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.990;LDAF=0.3631;AVGPOST=0.9900;RSQ=0.9835;ERATE=0.0012;THETA=0.0003;AC=794;AN=2184 GT:DS:GL:BD 0.36355311 0 1 62667913 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.926;LDAF=0.0722;AVGPOST=0.9787;RSQ=0.8793;ERATE=0.0044;THETA=0.0002;AC=151;AN=2184 GT:DS:GL:BD 0.06913920 0 1 62667920 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.986;LDAF=0.2687;AVGPOST=0.9960;RSQ=0.9926;ERATE=0.0006;THETA=0.0002;AC=586;AN=2184 GT:DS:GL:BD 0.26831502 0 1 62667987 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0043;AVGPOST=0.9982;RSQ=0.8082;ERATE=0.0006;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62668006 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9196;ERATE=0.0003;THETA=0.0024;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62668007 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5419;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62668062 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0096;AVGPOST=0.9990;RSQ=0.9619;ERATE=0.0003;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62668208 . TTTTTC T 5192 PASS INDEL;BAVGPOST=0.971;BRSQ=0.892;LDAF=0.1505;AVGPOST=0.9903;RSQ=0.9701;ERATE=0.0005;THETA=0.0007;AC=331;AN=2184 GT:DS:GL:BD 0.15155677 0 1 62668214 . TTTTC T 7417 PASS INDEL;BAVGPOST=0.970;BRSQ=0.885;LDAF=0.1623;AVGPOST=0.9628;RSQ=0.8964;ERATE=0.0038;THETA=0.0004;AC=347;AN=2184 GT:DS:GL:BD 0.15888278 0 1 62668228 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0375;AVGPOST=0.9978;RSQ=0.9730;ERATE=0.0005;THETA=0.0004;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 62668247 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1395;AVGPOST=0.9927;RSQ=0.9787;ERATE=0.0006;THETA=0.0003;AC=301;AN=2184 GT:DS:GL:BD 0.13782051 0 1 62668370 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.930;LDAF=0.0241;AVGPOST=0.9892;RSQ=0.8469;ERATE=0.0008;THETA=0.0004;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 62668382 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0185;AVGPOST=0.9984;RSQ=0.9671;ERATE=0.0003;THETA=0.0006;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 62668395 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.981;LDAF=0.0699;AVGPOST=0.9986;RSQ=0.9912;ERATE=0.0004;THETA=0.0003;AC=151;AN=2184 GT:DS:GL:BD 0.06913920 0 1 62668504 . C CA 103 PASS INDEL;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0086;AVGPOST=0.9984;RSQ=0.9339;ERATE=0.0003;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62668505 . A AC 1128 PASS INDEL;BAVGPOST=0.999;BRSQ=0.917;LDAF=0.0086;AVGPOST=0.9984;RSQ=0.9334;ERATE=0.0004;THETA=0.0044;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62668510 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0076;AVGPOST=0.9994;RSQ=0.9642;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62668534 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5868;ERATE=0.0007;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62668606 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.661;LDAF=0.0042;AVGPOST=0.9973;RSQ=0.7299;ERATE=0.0005;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62668694 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.5062;AVGPOST=0.9979;RSQ=0.9964;ERATE=0.0004;THETA=0.0006;AC=1105;AN=2184 GT:DS:GL:BD 0.50595236 1 1 62668730 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0011;AVGPOST=0.9982;RSQ=0.3791;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62668820 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.780;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.7625;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62668835 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5826;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62668853 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5298;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62668887 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62668944 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.1263;AVGPOST=0.9988;RSQ=0.9952;ERATE=0.0004;THETA=0.0002;AC=276;AN=2184 GT:DS:GL:BD 0.12637363 0 1 62669148 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0026;AVGPOST=0.9978;RSQ=0.6402;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62669169 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0250;AVGPOST=0.9970;RSQ=0.9607;ERATE=0.0003;THETA=0.0006;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 62669243 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1749;AVGPOST=0.9971;RSQ=0.9928;ERATE=0.0004;THETA=0.0006;AC=382;AN=2184 GT:DS:GL:BD 0.17490843 0 1 62669274 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.717;LDAF=0.0037;AVGPOST=0.9955;RSQ=0.4669;ERATE=0.0013;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62669289 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0021;AVGPOST=0.9980;RSQ=0.6271;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62669371 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.957;LDAF=0.0255;AVGPOST=0.9962;RSQ=0.9418;ERATE=0.0005;THETA=0.0006;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 62669508 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.6145;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62669594 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.968;LDAF=0.1381;AVGPOST=0.9937;RSQ=0.9798;ERATE=0.0004;THETA=0.0003;AC=300;AN=2184 GT:DS:GL:BD 0.13736264 0 1 62669603 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.764;LDAF=0.0090;AVGPOST=0.9933;RSQ=0.7281;ERATE=0.0008;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62669612 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.937;LDAF=0.1744;AVGPOST=0.9902;RSQ=0.9717;ERATE=0.0008;THETA=0.0002;AC=378;AN=2184 GT:DS:GL:BD 0.17307693 0 1 62669733 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.942;LDAF=0.0109;AVGPOST=0.9992;RSQ=0.9707;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62669742 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.927;LDAF=0.0079;AVGPOST=0.9984;RSQ=0.9206;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62669843 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2627;AVGPOST=0.9954;RSQ=0.9919;ERATE=0.0007;THETA=0.0002;AC=571;AN=2184 GT:DS:GL:BD 0.26144689 0 1 62669852 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0032;AVGPOST=0.9964;RSQ=0.5999;ERATE=0.0014;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62669909 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.945;LDAF=0.0147;AVGPOST=0.9970;RSQ=0.9253;ERATE=0.0005;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62669910 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.794;LDAF=0.0116;AVGPOST=0.9931;RSQ=0.7525;ERATE=0.0006;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62669911 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0068;AVGPOST=0.9971;RSQ=0.8343;ERATE=0.0004;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62669946 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4774;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62670025 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9358;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62670268 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0059;AVGPOST=0.9953;RSQ=0.7131;ERATE=0.0006;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62670290 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0119;AVGPOST=0.9995;RSQ=0.9834;ERATE=0.0003;THETA=0.0026;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62670313 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0178;AVGPOST=0.9998;RSQ=0.9941;ERATE=0.0003;THETA=0.0003;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 62670364 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1451;AVGPOST=0.9979;RSQ=0.9929;ERATE=0.0003;THETA=0.0004;AC=316;AN=2184 GT:DS:GL:BD 0.14468865 0 1 62670394 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0070;AVGPOST=0.9987;RSQ=0.9225;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62670442 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1336;AVGPOST=0.9988;RSQ=0.9957;ERATE=0.0004;THETA=0.0002;AC=289;AN=2184 GT:DS:GL:BD 0.13232601 0 1 62670465 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.634;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7906;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62670477 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8037;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62670505 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8534;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62670509 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1727;AVGPOST=0.9986;RSQ=0.9954;ERATE=0.0004;THETA=0.0005;AC=378;AN=2184 GT:DS:GL:BD 0.17307693 0 1 62670682 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.850;LDAF=0.0033;AVGPOST=0.9988;RSQ=0.8548;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62670763 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0018;AVGPOST=0.9978;RSQ=0.5128;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62670783 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0033;AVGPOST=0.9964;RSQ=0.5883;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62670802 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0075;AVGPOST=0.9984;RSQ=0.8996;ERATE=0.0005;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62670823 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5011;ERATE=0.0007;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62670864 rs112608532 C CA 639 PASS INDEL;BAVGPOST=0.990;BRSQ=0.755;LDAF=0.0197;AVGPOST=0.9887;RSQ=0.7860;ERATE=0.0013;THETA=0.0002;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62670881 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.760;LDAF=0.0047;AVGPOST=0.9968;RSQ=0.7437;ERATE=0.0005;THETA=0.0029;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62671045 . TTC T 933 PASS INDEL;BAVGPOST=0.848;BRSQ=0.310;LDAF=0.1407;AVGPOST=0.8515;RSQ=0.5334;ERATE=0.0092;THETA=0.0003;AC=219;AN=2184 GT:DS:GL:BD 0.10027473 0 1 62671049 . CTCTCTCTCTCTT C 8472 PASS INDEL;BAVGPOST=0.772;BRSQ=0.596;LDAF=0.3392;AVGPOST=0.8020;RSQ=0.6558;ERATE=0.0226;THETA=0.0003;AC=692;AN=2184 GT:DS:GL:BD 0.31684983 0 1 62671054 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.790;LDAF=0.0824;AVGPOST=0.9847;RSQ=0.9303;ERATE=0.0006;THETA=0.0002;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 62671061 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.777;BRSQ=0.687;LDAF=0.4271;AVGPOST=0.7727;RSQ=0.6252;ERATE=0.0580;THETA=0.0002;AC=907;AN=2184 GT:DS:GL:BD 0.41529304 0 1 62671085 . CTCTCTATATA C 4522 PASS INDEL;BAVGPOST=0.608;BRSQ=0.278;LDAF=0.3996;AVGPOST=0.6650;RSQ=0.3887;ERATE=0.0456;THETA=0.0004;AC=738;AN=2184 GT:DS:GL:BD 0.33791208 0 1 62671087 . CTCTA C 3018 PASS INDEL;BAVGPOST=0.532;BRSQ=0.253;LDAF=0.4601;AVGPOST=0.6662;RSQ=0.3979;ERATE=0.0453;THETA=0.0002;AC=911;AN=2184 GT:DS:GL:BD 0.41712454 0 1 62671089 . CTATATA C 6081 PASS INDEL;BAVGPOST=0.580;BRSQ=0.360;LDAF=0.6637;AVGPOST=0.7266;RSQ=0.4946;ERATE=0.0098;THETA=0.0003;AC=1543;AN=2184 GT:DS:GL:BD 0.70650184 1 1 62671106 . TATATATATA T 6369 PASS INDEL;BAVGPOST=0.604;BRSQ=0.385;LDAF=0.5257;AVGPOST=0.6674;RSQ=0.4459;ERATE=0.0313;THETA=0.0005;AC=1128;AN=2184 GT:DS:GL:BD 0.51648355 1 1 62671108 . TATATATA T 8089 PASS INDEL;BAVGPOST=0.606;BRSQ=0.410;LDAF=0.6520;AVGPOST=0.7805;RSQ=0.6191;ERATE=0.0021;THETA=0.0006;AC=1463;AN=2184 GT:DS:GL:BD 0.66987181 1 1 62671109 . ATATATAT A 3992 PASS INDEL;BAVGPOST=0.561;BRSQ=0.232;LDAF=0.4157;AVGPOST=0.6500;RSQ=0.3557;ERATE=0.0355;THETA=0.0006;AC=755;AN=2184 GT:DS:GL:BD 0.34569597 0 1 62671110 . TATATA T 8455 PASS INDEL;BAVGPOST=0.603;BRSQ=0.417;LDAF=0.6526;AVGPOST=0.7742;RSQ=0.6166;ERATE=0.0036;THETA=0.0005;AC=1471;AN=2184 GT:DS:GL:BD 0.67353481 1 1 62671112 . TATA T 7827 PASS INDEL;BAVGPOST=0.585;BRSQ=0.389;LDAF=0.6956;AVGPOST=0.8041;RSQ=0.6388;ERATE=0.0013;THETA=0.0005;AC=1570;AN=2184 GT:DS:GL:BD 0.71886444 1 1 62671114 . TA T 5614 PASS INDEL;BAVGPOST=0.578;BRSQ=0.390;LDAF=0.6710;AVGPOST=0.7834;RSQ=0.6174;ERATE=0.0026;THETA=0.0003;AC=1524;AN=2184 GT:DS:GL:BD 0.69780219 1 1 62671130 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.960;LDAF=0.1408;AVGPOST=0.9931;RSQ=0.9774;ERATE=0.0007;THETA=0.0006;AC=308;AN=2184 GT:DS:GL:BD 0.14102565 0 1 62671229 . G GA 5306 PASS INDEL;BAVGPOST=0.983;BRSQ=0.891;LDAF=0.0720;AVGPOST=0.9902;RSQ=0.9442;ERATE=0.0010;THETA=0.0009;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 62671239 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.937;BRSQ=0.896;LDAF=0.4719;AVGPOST=0.9159;RSQ=0.8786;ERATE=0.0109;THETA=0.0003;AC=1040;AN=2184 GT:DS:GL:BD 0.47619048 0 1 62671318 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0140;AVGPOST=0.9982;RSQ=0.9468;ERATE=0.0004;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62671383 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6918;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62671387 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.789;LDAF=0.0024;AVGPOST=0.9983;RSQ=0.7208;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62671468 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62671548 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1739;AVGPOST=0.9976;RSQ=0.9933;ERATE=0.0005;THETA=0.0006;AC=380;AN=2184 GT:DS:GL:BD 0.17399268 0 1 62671605 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.6283;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62671633 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.540;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6323;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62671644 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.679;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8019;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62671656 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.586;LDAF=0.0021;AVGPOST=0.9968;RSQ=0.3652;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62671991 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0075;AVGPOST=0.9996;RSQ=0.9768;ERATE=0.0003;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62672039 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.812;LDAF=0.0284;AVGPOST=0.9918;RSQ=0.8900;ERATE=0.0004;THETA=0.0002;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 62672040 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4070;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62672159 . A AG 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.711;LDAF=0.0020;AVGPOST=0.9968;RSQ=0.3744;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62672220 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0026;AVGPOST=0.9968;RSQ=0.6377;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62672252 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.679;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7946;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62672381 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0320;AVGPOST=0.9999;RSQ=0.9983;ERATE=0.0003;THETA=0.0004;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 62672389 . T TAACAGA 4368 PASS INDEL;BAVGPOST=0.991;BRSQ=0.875;LDAF=0.0300;AVGPOST=0.9984;RSQ=0.9746;ERATE=0.0004;THETA=0.0005;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 62672410 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8890;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62672481 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62672546 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.8881;AVGPOST=0.9990;RSQ=0.9967;ERATE=0.0004;THETA=0.0002;AC=1939;AN=2184 GT:DS:GL:BD 0.88782054 1 1 62672602 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62672699 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9940;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62672812 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62672864 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62672889 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9880;ERATE=0.0003;THETA=0.0010;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62672906 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62672976 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6347;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62673037 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5676;AVGPOST=0.9989;RSQ=0.9985;ERATE=0.0004;THETA=0.0002;AC=1239;AN=2184 GT:DS:GL:BD 0.56730771 1 1 62673062 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62673099 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62673126 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9717;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62673159 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9420;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62673193 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0018;AVGPOST=0.9996;RSQ=0.9151;ERATE=0.0008;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62673225 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5334;AVGPOST=0.9985;RSQ=0.9977;ERATE=0.0003;THETA=0.0026;AC=1164;AN=2184 GT:DS:GL:BD 0.53296703 1 1 62673287 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0968;AVGPOST=0.9996;RSQ=0.9983;ERATE=0.0003;THETA=0.0005;AC=212;AN=2184 GT:DS:GL:BD 0.09706960 0 1 62673365 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0693;AVGPOST=0.9993;RSQ=0.9962;ERATE=0.0003;THETA=0.0004;AC=151;AN=2184 GT:DS:GL:BD 0.06913920 0 1 62673448 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.705;LDAF=0.0029;AVGPOST=0.9984;RSQ=0.7509;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62673507 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.729;LDAF=0.0042;AVGPOST=0.9935;RSQ=0.4387;ERATE=0.0007;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62673552 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0179;AVGPOST=0.9997;RSQ=0.9917;ERATE=0.0004;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 62673572 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.972;LDAF=0.0989;AVGPOST=0.9984;RSQ=0.9919;ERATE=0.0005;THETA=0.0005;AC=216;AN=2184 GT:DS:GL:BD 0.09890110 0 1 62673631 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.567;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.4696;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62673668 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.984;LDAF=0.1441;AVGPOST=0.9987;RSQ=0.9955;ERATE=0.0003;THETA=0.0003;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 62673691 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.963;LDAF=0.4879;AVGPOST=0.9619;RSQ=0.9480;ERATE=0.0104;THETA=0.0010;AC=1069;AN=2184 GT:DS:GL:BD 0.48946887 0 1 62673704 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6241;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62673751 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.636;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62673788 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.951;LDAF=0.0186;AVGPOST=0.9993;RSQ=0.9838;ERATE=0.0003;THETA=0.0023;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 62673817 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.1442;AVGPOST=0.9991;RSQ=0.9969;ERATE=0.0004;THETA=0.0003;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 62673846 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.1567;AVGPOST=0.9985;RSQ=0.9954;ERATE=0.0003;THETA=0.0010;AC=344;AN=2184 GT:DS:GL:BD 0.15750916 0 1 62673855 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62673920 . C CT 81 PASS INDEL;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0027;AVGPOST=0.9982;RSQ=0.7227;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62673959 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6599;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62673963 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0122;AVGPOST=0.9993;RSQ=0.9780;ERATE=0.0003;THETA=0.0011;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 62673964 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6272;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62674003 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1442;AVGPOST=0.9989;RSQ=0.9968;ERATE=0.0003;THETA=0.0003;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 62674013 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1439;AVGPOST=0.9994;RSQ=0.9982;ERATE=0.0003;THETA=0.0002;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 62674016 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.1335;AVGPOST=0.9991;RSQ=0.9971;ERATE=0.0003;THETA=0.0004;AC=289;AN=2184 GT:DS:GL:BD 0.13232601 0 1 62674115 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1443;AVGPOST=0.9986;RSQ=0.9959;ERATE=0.0004;THETA=0.0004;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 62674184 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0030;AVGPOST=0.9972;RSQ=0.6320;ERATE=0.0008;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62674198 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.933;LDAF=0.1432;AVGPOST=0.9961;RSQ=0.9863;ERATE=0.0006;THETA=0.0002;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 62674199 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.919;LDAF=0.1239;AVGPOST=0.9957;RSQ=0.9823;ERATE=0.0006;THETA=0.0005;AC=272;AN=2184 GT:DS:GL:BD 0.12454212 0 1 62674256 rs57251012 ATCC A 8956 PASS INDEL;BAVGPOST=0.985;BRSQ=0.940;LDAF=0.1426;AVGPOST=0.9956;RSQ=0.9848;ERATE=0.0009;THETA=0.0003;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 62674267 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.941;LDAF=0.1428;AVGPOST=0.9970;RSQ=0.9895;ERATE=0.0005;THETA=0.0005;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 62674304 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.986;LDAF=0.1437;AVGPOST=0.9992;RSQ=0.9972;ERATE=0.0004;THETA=0.0004;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 62674340 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0112;AVGPOST=0.9996;RSQ=0.9846;ERATE=0.0003;THETA=0.0002;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62674349 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6061;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62674395 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0284;AVGPOST=0.9984;RSQ=0.9838;ERATE=0.0004;THETA=0.0010;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 62674396 . ATGCCT A 440 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.7538;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62674426 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62674463 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62674474 . A AT 567 PASS INDEL;BAVGPOST=0.998;BRSQ=0.844;LDAF=0.0061;AVGPOST=0.9990;RSQ=0.9275;ERATE=0.0004;THETA=0.0018;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62674507 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1338;AVGPOST=0.9989;RSQ=0.9966;ERATE=0.0003;THETA=0.0005;AC=289;AN=2184 GT:DS:GL:BD 0.13232601 0 1 62674521 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1443;AVGPOST=0.9983;RSQ=0.9949;ERATE=0.0003;THETA=0.0002;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 62674547 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1441;AVGPOST=0.9997;RSQ=0.9990;ERATE=0.0003;THETA=0.0002;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 62674592 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9156;ERATE=0.0008;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62674613 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0031;AVGPOST=0.9996;RSQ=0.9453;ERATE=0.0003;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62674636 . T TA 15217 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1455;AVGPOST=0.9989;RSQ=0.9962;ERATE=0.0003;THETA=0.0003;AC=318;AN=2184 GT:DS:GL:BD 0.14560440 0 1 62674747 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7882;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62674770 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0031;AVGPOST=0.9990;RSQ=0.8656;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62674775 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.636;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7948;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62674791 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5701;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62674793 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1442;AVGPOST=0.9991;RSQ=0.9969;ERATE=0.0004;THETA=0.0003;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 62674858 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5036;AVGPOST=0.9969;RSQ=0.9952;ERATE=0.0009;THETA=0.0002;AC=1099;AN=2184 GT:DS:GL:BD 0.50320512 1 1 62674864 . A AGG 143 PASS INDEL;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0021;AVGPOST=0.9981;RSQ=0.6496;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62674986 . T TTTG 8874 PASS INDEL;BAVGPOST=0.984;BRSQ=0.930;LDAF=0.1303;AVGPOST=0.9927;RSQ=0.9724;ERATE=0.0011;THETA=0.0003;AC=287;AN=2184 GT:DS:GL:BD 0.13141026 0 1 62675012 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.1312;AVGPOST=0.9994;RSQ=0.9976;ERATE=0.0004;THETA=0.0005;AC=287;AN=2184 GT:DS:GL:BD 0.13141026 0 1 62675128 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0159;AVGPOST=0.9996;RSQ=0.9906;ERATE=0.0003;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62675230 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7150;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62675232 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0179;AVGPOST=0.9999;RSQ=0.9964;ERATE=0.0003;THETA=0.0035;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 62675261 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2742;AVGPOST=0.9980;RSQ=0.9966;ERATE=0.0003;THETA=0.0003;AC=596;AN=2184 GT:DS:GL:BD 0.27289379 0 1 62675287 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1311;AVGPOST=0.9993;RSQ=0.9979;ERATE=0.0003;THETA=0.0005;AC=286;AN=2184 GT:DS:GL:BD 0.13095239 0 1 62675385 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1314;AVGPOST=0.9996;RSQ=0.9985;ERATE=0.0003;THETA=0.0002;AC=287;AN=2184 GT:DS:GL:BD 0.13141026 0 1 62675389 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62675394 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0119;AVGPOST=0.9999;RSQ=0.9965;ERATE=0.0003;THETA=0.0002;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62675426 . C CT 2232 PASS INDEL;BAVGPOST=0.997;BRSQ=0.970;LDAF=0.0373;AVGPOST=0.9924;RSQ=0.9189;ERATE=0.0012;THETA=0.0004;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 62675497 . AC A 315 PASS INDEL;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0032;AVGPOST=0.9970;RSQ=0.6383;ERATE=0.0005;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62675539 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62675619 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3218;AVGPOST=0.9998;RSQ=0.9996;ERATE=0.0003;THETA=0.0003;AC=701;AN=2184 GT:DS:GL:BD 0.32097068 0 1 62675654 . TGGA T 278 PASS INDEL;BAVGPOST=0.987;BRSQ=0.634;LDAF=0.0273;AVGPOST=0.9799;RSQ=0.7070;ERATE=0.0043;THETA=0.0002;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 62675662 . G GA 158 PASS INDEL;BAVGPOST=0.996;BRSQ=0.818;LDAF=0.0126;AVGPOST=0.9906;RSQ=0.7120;ERATE=0.0013;THETA=0.0002;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 62675664 . G GAA 168 PASS INDEL;BAVGPOST=0.996;BRSQ=0.801;LDAF=0.0098;AVGPOST=0.9932;RSQ=0.7369;ERATE=0.0008;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62675674 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.863;LDAF=0.0084;AVGPOST=0.9971;RSQ=0.8855;ERATE=0.0042;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62675691 . GGAA G 195 PASS INDEL;BAVGPOST=0.995;BRSQ=0.731;LDAF=0.0170;AVGPOST=0.9831;RSQ=0.6047;ERATE=0.0037;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 62675707 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62675709 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1261;AVGPOST=0.9999;RSQ=0.9996;ERATE=0.0003;THETA=0.0003;AC=276;AN=2184 GT:DS:GL:BD 0.12637363 0 1 62675793 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62675886 . GGAA G 62 PASS INDEL;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6850;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62675892 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4994;AVGPOST=0.9996;RSQ=0.9995;ERATE=0.0003;THETA=0.0007;AC=1089;AN=2184 GT:DS:GL:BD 0.49862638 0 1 62675894 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0110;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62675945 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0026;AVGPOST=0.9998;RSQ=0.9672;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62675951 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62675956 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62675994 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62676052 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62676060 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9570;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62676062 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62676091 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1641;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=359;AN=2184 GT:DS:GL:BD 0.16437729 0 1 62676247 . GAACT G 1225 PASS INDEL;BAVGPOST=0.999;BRSQ=0.939;LDAF=0.0060;AVGPOST=0.9981;RSQ=0.8610;ERATE=0.0005;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62676284 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1566;AVGPOST=0.9997;RSQ=0.9992;ERATE=0.0003;THETA=0.0015;AC=340;AN=2184 GT:DS:GL:BD 0.15567766 0 1 62676612 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1957;AVGPOST=0.9992;RSQ=0.9984;ERATE=0.0003;THETA=0.0046;AC=428;AN=2184 GT:DS:GL:BD 0.19597070 0 1 62676659 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62676688 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62676714 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0056;AVGPOST=0.9997;RSQ=0.9732;ERATE=0.0003;THETA=0.0018;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62676727 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0027;AVGPOST=0.9998;RSQ=0.9682;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62676777 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62676795 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9005;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62677048 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3638;AVGPOST=0.9998;RSQ=0.9997;ERATE=0.0003;THETA=0.0016;AC=792;AN=2184 GT:DS:GL:BD 0.36263737 0 1 62677050 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1769;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=386;AN=2184 GT:DS:GL:BD 0.17673993 0 1 62677054 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=0.9999;RSQ=0.9762;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62677062 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62677063 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62677118 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1941;AVGPOST=0.9987;RSQ=0.9974;ERATE=0.0003;THETA=0.0005;AC=423;AN=2184 GT:DS:GL:BD 0.19368131 0 1 62677138 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0047;AVGPOST=0.9996;RSQ=0.9649;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62677153 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7968;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62677180 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62677230 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0173;AVGPOST=0.9999;RSQ=0.9964;ERATE=0.0003;THETA=0.0007;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62677281 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0129;AVGPOST=0.9998;RSQ=0.9936;ERATE=0.0003;THETA=0.0006;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62677299 . T TC 115 PASS INDEL;BAVGPOST=0.998;BRSQ=0.771;LDAF=0.0061;AVGPOST=0.9951;RSQ=0.6757;ERATE=0.0010;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62677306 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0080;AVGPOST=0.9995;RSQ=0.9672;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62677319 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8985;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62677348 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7871;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62677365 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0072;AVGPOST=0.9993;RSQ=0.9534;ERATE=0.0003;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62677366 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1939;AVGPOST=0.9871;RSQ=0.9701;ERATE=0.0023;THETA=0.0006;AC=425;AN=2184 GT:DS:GL:BD 0.19459707 0 1 62677374 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0037;AVGPOST=0.9961;RSQ=0.6255;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62677395 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0019;AVGPOST=0.9973;RSQ=0.3198;ERATE=0.0006;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62677403 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.640;LDAF=0.0044;AVGPOST=0.9935;RSQ=0.4638;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62677433 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0061;AVGPOST=0.9968;RSQ=0.7766;ERATE=0.0005;THETA=0.0027;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62677434 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0045;AVGPOST=0.9941;RSQ=0.4446;ERATE=0.0019;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62677554 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.777;LDAF=0.0532;AVGPOST=0.9755;RSQ=0.8363;ERATE=0.0004;THETA=0.0049;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 62677562 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.944;BRSQ=0.713;LDAF=0.0937;AVGPOST=0.9543;RSQ=0.8016;ERATE=0.0028;THETA=0.0003;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 62677568 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.932;LDAF=0.1828;AVGPOST=0.9690;RSQ=0.9249;ERATE=0.0008;THETA=0.0006;AC=398;AN=2184 GT:DS:GL:BD 0.18223444 0 1 62677569 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0188;AVGPOST=0.9955;RSQ=0.8874;ERATE=0.0009;THETA=0.0002;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62677585 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.764;LDAF=0.0034;AVGPOST=0.9974;RSQ=0.7044;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62677588 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.869;LDAF=0.0644;AVGPOST=0.9889;RSQ=0.9359;ERATE=0.0006;THETA=0.0007;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 62677594 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.923;LDAF=0.1230;AVGPOST=0.9896;RSQ=0.9644;ERATE=0.0005;THETA=0.0003;AC=273;AN=2184 GT:DS:GL:BD 0.12500000 0 1 62677623 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.942;LDAF=0.0728;AVGPOST=0.9933;RSQ=0.9649;ERATE=0.0004;THETA=0.0009;AC=155;AN=2184 GT:DS:GL:BD 0.07097070 0 1 62677626 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5492;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62677668 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0348;AVGPOST=0.9997;RSQ=0.9962;ERATE=0.0003;THETA=0.0003;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 62677723 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.1274;AVGPOST=0.9957;RSQ=0.9842;ERATE=0.0004;THETA=0.0006;AC=276;AN=2184 GT:DS:GL:BD 0.12637363 0 1 62677735 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.986;LDAF=0.1260;AVGPOST=0.9956;RSQ=0.9860;ERATE=0.0003;THETA=0.0014;AC=276;AN=2184 GT:DS:GL:BD 0.12637363 0 1 62677802 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5420;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62677806 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1312;AVGPOST=0.9987;RSQ=0.9958;ERATE=0.0003;THETA=0.0004;AC=285;AN=2184 GT:DS:GL:BD 0.13049451 0 1 62677816 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.636;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8664;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62677822 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1315;AVGPOST=0.9979;RSQ=0.9934;ERATE=0.0004;THETA=0.0013;AC=285;AN=2184 GT:DS:GL:BD 0.13049451 0 1 62677845 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1638;AVGPOST=0.9976;RSQ=0.9938;ERATE=0.0004;THETA=0.0004;AC=355;AN=2184 GT:DS:GL:BD 0.16254579 0 1 62677895 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.845;LDAF=0.0070;AVGPOST=0.9950;RSQ=0.7526;ERATE=0.0006;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62677896 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.982;LDAF=0.1526;AVGPOST=0.9963;RSQ=0.9897;ERATE=0.0003;THETA=0.0005;AC=334;AN=2184 GT:DS:GL:BD 0.15293041 0 1 62677900 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.975;LDAF=0.1298;AVGPOST=0.9965;RSQ=0.9887;ERATE=0.0005;THETA=0.0006;AC=285;AN=2184 GT:DS:GL:BD 0.13049451 0 1 62677971 . C CTG 17313 PASS INDEL;BAVGPOST=0.986;BRSQ=0.933;LDAF=0.1237;AVGPOST=0.9905;RSQ=0.9683;ERATE=0.0006;THETA=0.0006;AC=273;AN=2184 GT:DS:GL:BD 0.12500000 0 1 62677973 . C CTT 16589 PASS INDEL;BAVGPOST=0.986;BRSQ=0.933;LDAF=0.1232;AVGPOST=0.9910;RSQ=0.9710;ERATE=0.0004;THETA=0.0005;AC=271;AN=2184 GT:DS:GL:BD 0.12408425 0 1 62678009 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1296;AVGPOST=0.9971;RSQ=0.9910;ERATE=0.0004;THETA=0.0009;AC=282;AN=2184 GT:DS:GL:BD 0.12912089 0 1 62678022 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0025;AVGPOST=0.9990;RSQ=0.8382;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62678024 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0051;AVGPOST=0.9982;RSQ=0.8701;ERATE=0.0004;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62678032 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1306;AVGPOST=0.9979;RSQ=0.9932;ERATE=0.0004;THETA=0.0024;AC=285;AN=2184 GT:DS:GL:BD 0.13049451 0 1 62678060 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8801;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62678089 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.662;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5674;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62678119 . TC T 2415 PASS INDEL;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0254;AVGPOST=0.9968;RSQ=0.9437;ERATE=0.0005;THETA=0.0009;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 62678154 . A AAAT 238 PASS INDEL;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5723;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62678172 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1314;AVGPOST=0.9982;RSQ=0.9929;ERATE=0.0005;THETA=0.0013;AC=286;AN=2184 GT:DS:GL:BD 0.13095239 0 1 62678249 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1330;AVGPOST=0.9977;RSQ=0.9929;ERATE=0.0004;THETA=0.0003;AC=288;AN=2184 GT:DS:GL:BD 0.13186814 0 1 62678264 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.711;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7429;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62678281 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.423;LDAF=0.0093;AVGPOST=0.9928;RSQ=0.7002;ERATE=0.0020;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62678313 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1320;AVGPOST=0.9975;RSQ=0.9917;ERATE=0.0003;THETA=0.0012;AC=288;AN=2184 GT:DS:GL:BD 0.13186814 0 1 62678388 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1309;AVGPOST=0.9976;RSQ=0.9913;ERATE=0.0005;THETA=0.0004;AC=284;AN=2184 GT:DS:GL:BD 0.13003664 0 1 62678436 . C CAG 9358 PASS INDEL;BAVGPOST=0.980;BRSQ=0.912;LDAF=0.1300;AVGPOST=0.9969;RSQ=0.9893;ERATE=0.0004;THETA=0.0003;AC=285;AN=2184 GT:DS:GL:BD 0.13049451 0 1 62678521 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62678678 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0025;AVGPOST=0.9984;RSQ=0.7067;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62678687 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.734;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.5235;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62678735 . TAAC T 16230 PASS INDEL;BAVGPOST=0.995;BRSQ=0.981;LDAF=0.1324;AVGPOST=0.9895;RSQ=0.9676;ERATE=0.0004;THETA=0.0003;AC=294;AN=2184 GT:DS:GL:BD 0.13461539 0 1 62678761 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.3186;AVGPOST=0.9918;RSQ=0.9874;ERATE=0.0009;THETA=0.0007;AC=694;AN=2184 GT:DS:GL:BD 0.31776556 0 1 62678806 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1312;AVGPOST=0.9983;RSQ=0.9935;ERATE=0.0004;THETA=0.0003;AC=286;AN=2184 GT:DS:GL:BD 0.13095239 0 1 62678890 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.971;LDAF=0.0347;AVGPOST=0.9998;RSQ=0.9975;ERATE=0.0003;THETA=0.0012;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 62678957 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8566;ERATE=0.0003;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62678971 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1317;AVGPOST=0.9986;RSQ=0.9960;ERATE=0.0003;THETA=0.0006;AC=286;AN=2184 GT:DS:GL:BD 0.13095239 0 1 62678985 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.876;LDAF=0.0065;AVGPOST=0.9984;RSQ=0.9051;ERATE=0.0005;THETA=0.0010;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62679033 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0019;AVGPOST=0.9983;RSQ=0.6675;ERATE=0.0006;THETA=0.0040;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62679082 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62679129 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62679131 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0960;AVGPOST=0.9984;RSQ=0.9930;ERATE=0.0004;THETA=0.0005;AC=209;AN=2184 GT:DS:GL:BD 0.09569597 0 1 62679202 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1306;AVGPOST=0.9986;RSQ=0.9956;ERATE=0.0003;THETA=0.0020;AC=285;AN=2184 GT:DS:GL:BD 0.13049451 0 1 62679219 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62679226 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0346;AVGPOST=0.9991;RSQ=0.9890;ERATE=0.0003;THETA=0.0037;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 62679291 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0224;AVGPOST=0.9999;RSQ=0.9974;ERATE=0.0003;THETA=0.0004;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 62679351 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0347;AVGPOST=0.9995;RSQ=0.9925;ERATE=0.0003;THETA=0.0005;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 62679372 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9904;ERATE=0.0003;THETA=0.0016;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62679375 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5348;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62679384 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7654;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62679405 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0022;AVGPOST=0.9988;RSQ=0.7730;ERATE=0.0005;THETA=0.0017;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62679456 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1411;AVGPOST=0.9963;RSQ=0.9887;ERATE=0.0004;THETA=0.0015;AC=306;AN=2184 GT:DS:GL:BD 0.14010990 0 1 62679474 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.722;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.6891;ERATE=0.0004;THETA=0.0047;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62679579 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0346;AVGPOST=0.9992;RSQ=0.9903;ERATE=0.0003;THETA=0.0004;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 62679759 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0576;AVGPOST=0.9980;RSQ=0.9863;ERATE=0.0004;THETA=0.0015;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 62679931 . AC A 149 PASS INDEL;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7696;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62679977 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62680037 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0565;AVGPOST=0.9994;RSQ=0.9953;ERATE=0.0003;THETA=0.0004;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 62680068 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0029;AVGPOST=0.9977;RSQ=0.6967;ERATE=0.0014;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62680095 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0065;AVGPOST=0.9993;RSQ=0.9508;ERATE=0.0003;THETA=0.0024;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62680101 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0569;AVGPOST=0.9990;RSQ=0.9925;ERATE=0.0003;THETA=0.0025;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 62680102 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0075;AVGPOST=0.9976;RSQ=0.8861;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62680109 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0231;AVGPOST=0.9980;RSQ=0.9688;ERATE=0.0004;THETA=0.0037;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 62680222 . GC G 1208 PASS INDEL;BAVGPOST=0.998;BRSQ=0.960;LDAF=0.0238;AVGPOST=0.9968;RSQ=0.9436;ERATE=0.0005;THETA=0.0040;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 62680311 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0144;AVGPOST=0.9993;RSQ=0.9783;ERATE=0.0004;THETA=0.0012;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62680342 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7550;ERATE=0.0004;THETA=0.0139;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62680375 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.876;LDAF=0.0046;AVGPOST=0.9990;RSQ=0.9150;ERATE=0.0006;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62680440 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.931;LDAF=0.0141;AVGPOST=0.9953;RSQ=0.8613;ERATE=0.0003;THETA=0.0021;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62680461 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0345;AVGPOST=0.9979;RSQ=0.9724;ERATE=0.0006;THETA=0.0009;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 62680492 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.626;LDAF=0.0038;AVGPOST=0.9985;RSQ=0.8287;ERATE=0.0005;THETA=0.0090;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62680493 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.716;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6058;ERATE=0.0006;THETA=0.0093;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62680518 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.953;LDAF=0.1114;AVGPOST=0.9913;RSQ=0.9705;ERATE=0.0005;THETA=0.0032;AC=240;AN=2184 GT:DS:GL:BD 0.10989011 0 1 62680519 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0363;AVGPOST=0.9963;RSQ=0.9590;ERATE=0.0006;THETA=0.0046;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 62680550 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.545;LDAF=0.0021;AVGPOST=0.9988;RSQ=0.7489;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62680650 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0334;AVGPOST=0.9985;RSQ=0.9822;ERATE=0.0003;THETA=0.0065;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 62680652 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.880;LDAF=0.0112;AVGPOST=0.9974;RSQ=0.9146;ERATE=0.0005;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62680718 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.933;LDAF=0.0556;AVGPOST=0.9946;RSQ=0.9625;ERATE=0.0003;THETA=0.0040;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 62680719 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0016;AVGPOST=0.9983;RSQ=0.6206;ERATE=0.0003;THETA=0.0063;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62680730 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0022;AVGPOST=0.9999;RSQ=0.9736;ERATE=0.0003;THETA=0.0028;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62680772 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.972;LDAF=0.0311;AVGPOST=0.9993;RSQ=0.9896;ERATE=0.0004;THETA=0.0109;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 62680892 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0057;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62680934 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.980;LDAF=0.0721;AVGPOST=0.9948;RSQ=0.9739;ERATE=0.0003;THETA=0.0016;AC=156;AN=2184 GT:DS:GL:BD 0.07142857 0 1 62680981 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.968;LDAF=0.6692;AVGPOST=0.9751;RSQ=0.9608;ERATE=0.0021;THETA=0.0132;AC=1463;AN=2184 GT:DS:GL:BD 0.66987181 1 1 62681053 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.963;LDAF=0.0332;AVGPOST=0.9989;RSQ=0.9888;ERATE=0.0003;THETA=0.0028;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 62681109 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62681299 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.604;LDAF=0.0191;AVGPOST=0.9803;RSQ=0.6025;ERATE=0.0040;THETA=0.0036;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 62681340 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.965;LDAF=0.0338;AVGPOST=0.9975;RSQ=0.9703;ERATE=0.0004;THETA=0.0044;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 62681381 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0105;AVGPOST=0.9978;RSQ=0.9095;ERATE=0.0004;THETA=0.0011;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62681417 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.788;LDAF=0.0059;AVGPOST=0.9966;RSQ=0.7681;ERATE=0.0012;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62681629 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.841;LDAF=0.0359;AVGPOST=0.9900;RSQ=0.8847;ERATE=0.0023;THETA=0.0006;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 62681631 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.800;LDAF=0.0180;AVGPOST=0.9979;RSQ=0.9531;ERATE=0.0003;THETA=0.0052;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 62681633 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0003;THETA=0.0051;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62681670 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.686;LDAF=0.0036;AVGPOST=0.9979;RSQ=0.7703;ERATE=0.0003;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62681694 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.937;LDAF=0.0135;AVGPOST=0.9951;RSQ=0.8648;ERATE=0.0004;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62681763 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.889;LDAF=0.0188;AVGPOST=0.9976;RSQ=0.9568;ERATE=0.0003;THETA=0.0043;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 62681767 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.940;LDAF=0.0352;AVGPOST=0.9956;RSQ=0.9526;ERATE=0.0006;THETA=0.0019;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 62681773 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.932;LDAF=0.0351;AVGPOST=0.9978;RSQ=0.9764;ERATE=0.0004;THETA=0.0038;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 62681802 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0137;AVGPOST=0.9982;RSQ=0.9479;ERATE=0.0004;THETA=0.0016;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62681828 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0360;AVGPOST=0.9984;RSQ=0.9817;ERATE=0.0003;THETA=0.0006;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 62681950 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0022;AVGPOST=0.9978;RSQ=0.5644;ERATE=0.0013;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62681970 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0078;AVGPOST=0.9990;RSQ=0.9400;ERATE=0.0004;THETA=0.0055;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62681995 . C CT 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4373;ERATE=0.0004;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62682008 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0367;AVGPOST=0.9973;RSQ=0.9693;ERATE=0.0007;THETA=0.0009;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 62682016 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.515;LDAF=0.0018;AVGPOST=0.9977;RSQ=0.4845;ERATE=0.0003;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62682063 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.949;LDAF=0.0355;AVGPOST=0.9991;RSQ=0.9888;ERATE=0.0003;THETA=0.0009;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 62682071 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.954;LDAF=0.0362;AVGPOST=0.9963;RSQ=0.9554;ERATE=0.0004;THETA=0.0018;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 62682121 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0366;AVGPOST=0.9986;RSQ=0.9817;ERATE=0.0005;THETA=0.0006;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 62682152 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0025;AVGPOST=0.9994;RSQ=0.8882;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62682261 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7252;ERATE=0.0006;THETA=0.0029;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62682272 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1515;AVGPOST=0.9952;RSQ=0.9854;ERATE=0.0005;THETA=0.0006;AC=328;AN=2184 GT:DS:GL:BD 0.15018316 0 1 62682273 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.803;LDAF=0.0067;AVGPOST=0.9977;RSQ=0.8612;ERATE=0.0004;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62682287 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0348;AVGPOST=0.9996;RSQ=0.9946;ERATE=0.0003;THETA=0.0005;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 62682291 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.743;LDAF=0.0071;AVGPOST=0.9965;RSQ=0.8049;ERATE=0.0007;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62682298 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0369;AVGPOST=0.9981;RSQ=0.9759;ERATE=0.0004;THETA=0.0010;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 62682321 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0033;AVGPOST=0.9985;RSQ=0.8124;ERATE=0.0004;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62682367 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.952;LDAF=0.0384;AVGPOST=0.9962;RSQ=0.9631;ERATE=0.0006;THETA=0.0013;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 62682398 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.497;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4177;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62682402 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0360;AVGPOST=0.9986;RSQ=0.9816;ERATE=0.0005;THETA=0.0003;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 62682434 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4996;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62682465 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.687;LDAF=0.0069;AVGPOST=0.9927;RSQ=0.6263;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62682505 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.992;LDAF=0.4661;AVGPOST=0.9888;RSQ=0.9825;ERATE=0.0007;THETA=0.0007;AC=1019;AN=2184 GT:DS:GL:BD 0.46657509 0 1 62682532 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.921;LDAF=0.0359;AVGPOST=0.9984;RSQ=0.9796;ERATE=0.0003;THETA=0.0003;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 62682574 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.972;LDAF=0.0367;AVGPOST=0.9985;RSQ=0.9812;ERATE=0.0005;THETA=0.0007;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 62682710 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4743;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62682781 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.709;LDAF=0.0473;AVGPOST=0.9814;RSQ=0.8318;ERATE=0.0010;THETA=0.0010;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 62682811 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0385;AVGPOST=0.9958;RSQ=0.9558;ERATE=0.0007;THETA=0.0009;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 62682988 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.980;LDAF=0.1592;AVGPOST=0.9785;RSQ=0.9358;ERATE=0.0018;THETA=0.0005;AC=334;AN=2184 GT:DS:GL:BD 0.15293041 0 1 62683067 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.883;LDAF=0.1486;AVGPOST=0.9475;RSQ=0.8521;ERATE=0.0050;THETA=0.0006;AC=311;AN=2184 GT:DS:GL:BD 0.14239927 0 1 62683141 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.513;LDAF=0.0280;AVGPOST=0.9854;RSQ=0.7960;ERATE=0.0008;THETA=0.0007;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 62683208 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.985;LDAF=0.1111;AVGPOST=0.9939;RSQ=0.9781;ERATE=0.0003;THETA=0.0002;AC=243;AN=2184 GT:DS:GL:BD 0.11126374 0 1 62683229 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0144;AVGPOST=0.9978;RSQ=0.9379;ERATE=0.0005;THETA=0.0002;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 62683310 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62683375 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0141;AVGPOST=0.9982;RSQ=0.9447;ERATE=0.0003;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 62683405 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.940;LDAF=0.0356;AVGPOST=0.9992;RSQ=0.9898;ERATE=0.0004;THETA=0.0007;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 62683419 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.952;LDAF=0.0375;AVGPOST=0.9982;RSQ=0.9776;ERATE=0.0005;THETA=0.0003;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 62683484 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.9712;AVGPOST=0.9968;RSQ=0.9549;ERATE=0.0005;THETA=0.0006;AC=2123;AN=2184 GT:DS:GL:BD 0.97206962 1 1 62683493 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.802;LDAF=0.0167;AVGPOST=0.9984;RSQ=0.9611;ERATE=0.0003;THETA=0.0002;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62683531 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0359;AVGPOST=0.9990;RSQ=0.9869;ERATE=0.0003;THETA=0.0007;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 62683546 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.988;LDAF=0.3781;AVGPOST=0.9912;RSQ=0.9849;ERATE=0.0004;THETA=0.0003;AC=825;AN=2184 GT:DS:GL:BD 0.37774727 0 1 62683623 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.977;LDAF=0.1671;AVGPOST=0.9877;RSQ=0.9686;ERATE=0.0006;THETA=0.0004;AC=364;AN=2184 GT:DS:GL:BD 0.16666667 0 1 62683631 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.785;LDAF=0.0035;AVGPOST=0.9974;RSQ=0.7041;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62683684 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.949;LDAF=0.0360;AVGPOST=0.9981;RSQ=0.9787;ERATE=0.0003;THETA=0.0005;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 62683760 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0358;AVGPOST=0.9992;RSQ=0.9909;ERATE=0.0004;THETA=0.0006;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 62683789 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0357;AVGPOST=0.9995;RSQ=0.9946;ERATE=0.0003;THETA=0.0002;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 62683834 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5276;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62683904 . G GT 156 PASS INDEL;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8537;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62684009 . GTTTT G 241 PASS INDEL;BAVGPOST=0.998;BRSQ=0.942;LDAF=0.0036;AVGPOST=0.9987;RSQ=0.8628;ERATE=0.0003;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62684010 . TTTTG T 1035 PASS INDEL;BAVGPOST=0.998;BRSQ=0.932;LDAF=0.0037;AVGPOST=0.9985;RSQ=0.8464;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62684097 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.895;LDAF=0.0338;AVGPOST=0.9924;RSQ=0.9215;ERATE=0.0005;THETA=0.0005;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 62684139 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.946;LDAF=0.0246;AVGPOST=0.9966;RSQ=0.9532;ERATE=0.0004;THETA=0.0006;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 62684160 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0381;AVGPOST=0.9937;RSQ=0.9284;ERATE=0.0012;THETA=0.0005;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 62684161 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.960;LDAF=0.4089;AVGPOST=0.9813;RSQ=0.9701;ERATE=0.0010;THETA=0.0004;AC=900;AN=2184 GT:DS:GL:BD 0.41208792 0 1 62684307 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8203;AVGPOST=0.9970;RSQ=0.9922;ERATE=0.0004;THETA=0.0005;AC=1795;AN=2184 GT:DS:GL:BD 0.82188642 1 1 62684332 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0362;AVGPOST=0.9979;RSQ=0.9785;ERATE=0.0003;THETA=0.0007;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 62684447 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0385;AVGPOST=0.9941;RSQ=0.9322;ERATE=0.0019;THETA=0.0006;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 62684528 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.801;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5959;ERATE=0.0006;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62684555 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0125;AVGPOST=0.9995;RSQ=0.9808;ERATE=0.0003;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62684559 . TCC T 1278 PASS INDEL;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0126;AVGPOST=0.9992;RSQ=0.9715;ERATE=0.0003;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62684614 . CT C 705 PASS INDEL;BAVGPOST=0.998;BRSQ=0.940;LDAF=0.0117;AVGPOST=0.9972;RSQ=0.9069;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62684664 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.949;BRSQ=0.666;LDAF=0.9190;AVGPOST=0.9259;RSQ=0.6308;ERATE=0.0093;THETA=0.0003;AC=2062;AN=2184 GT:DS:GL:BD 0.94413918 1 1 62684685 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0029;AVGPOST=0.9987;RSQ=0.8546;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62684816 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.2721;AVGPOST=0.9955;RSQ=0.9912;ERATE=0.0005;THETA=0.0004;AC=595;AN=2184 GT:DS:GL:BD 0.27243590 0 1 62684947 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0244;AVGPOST=0.9994;RSQ=0.9902;ERATE=0.0003;THETA=0.0004;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 62685013 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62685137 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.784;LDAF=0.0119;AVGPOST=0.9928;RSQ=0.7837;ERATE=0.0004;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62685142 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.3069;AVGPOST=0.9961;RSQ=0.9930;ERATE=0.0008;THETA=0.0004;AC=671;AN=2184 GT:DS:GL:BD 0.30723444 0 1 62685176 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.794;LDAF=0.9630;AVGPOST=0.9918;RSQ=0.9044;ERATE=0.0007;THETA=0.0005;AC=2109;AN=2184 GT:DS:GL:BD 0.96565932 1 1 62685177 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.968;LDAF=0.2962;AVGPOST=0.9906;RSQ=0.9819;ERATE=0.0013;THETA=0.0006;AC=650;AN=2184 GT:DS:GL:BD 0.29761904 0 1 62685230 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3046;AVGPOST=0.9958;RSQ=0.9921;ERATE=0.0007;THETA=0.0003;AC=669;AN=2184 GT:DS:GL:BD 0.30631867 0 1 62685369 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.921;LDAF=0.2900;AVGPOST=0.9831;RSQ=0.9688;ERATE=0.0005;THETA=0.0004;AC=648;AN=2184 GT:DS:GL:BD 0.29670331 0 1 62685370 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0247;AVGPOST=0.9985;RSQ=0.9774;ERATE=0.0005;THETA=0.0003;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 62685422 . AAAAG A 10378 PASS INDEL;BAVGPOST=0.938;BRSQ=0.853;LDAF=0.2747;AVGPOST=0.9379;RSQ=0.8817;ERATE=0.0096;THETA=0.0003;AC=596;AN=2184 GT:DS:GL:BD 0.27289379 0 1 62685497 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6008;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62685539 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4667;AVGPOST=0.9968;RSQ=0.9948;ERATE=0.0005;THETA=0.0004;AC=1021;AN=2184 GT:DS:GL:BD 0.46749085 0 1 62685556 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0028;AVGPOST=0.9972;RSQ=0.5658;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62685609 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.974;LDAF=0.3021;AVGPOST=0.9959;RSQ=0.9923;ERATE=0.0004;THETA=0.0005;AC=663;AN=2184 GT:DS:GL:BD 0.30357143 0 1 62685641 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.978;LDAF=0.3004;AVGPOST=0.9944;RSQ=0.9901;ERATE=0.0006;THETA=0.0002;AC=658;AN=2184 GT:DS:GL:BD 0.30128205 0 1 62685665 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.783;LDAF=0.9230;AVGPOST=0.9530;RSQ=0.7513;ERATE=0.0085;THETA=0.0007;AC=2040;AN=2184 GT:DS:GL:BD 0.93406594 1 1 62685692 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.968;LDAF=0.3006;AVGPOST=0.9939;RSQ=0.9895;ERATE=0.0005;THETA=0.0005;AC=658;AN=2184 GT:DS:GL:BD 0.30128205 0 1 62685733 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4570;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62685746 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.622;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4611;ERATE=0.0006;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62685767 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62685838 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0034;AVGPOST=0.9979;RSQ=0.7230;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62685978 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5979;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62686215 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.853;LDAF=0.0059;AVGPOST=0.9979;RSQ=0.8772;ERATE=0.0004;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62686219 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6860;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62686233 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6913;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62686243 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62686258 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.846;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9763;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62686299 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.984;LDAF=0.3066;AVGPOST=0.9953;RSQ=0.9908;ERATE=0.0008;THETA=0.0003;AC=673;AN=2184 GT:DS:GL:BD 0.30815017 0 1 62686310 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62686438 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.945;BRSQ=0.883;LDAF=0.2928;AVGPOST=0.9803;RSQ=0.9612;ERATE=0.0012;THETA=0.0004;AC=650;AN=2184 GT:DS:GL:BD 0.29761904 0 1 62686471 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.983;LDAF=0.1497;AVGPOST=0.9952;RSQ=0.9851;ERATE=0.0004;THETA=0.0002;AC=326;AN=2184 GT:DS:GL:BD 0.14926741 0 1 62686487 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.986;LDAF=0.1135;AVGPOST=0.9927;RSQ=0.9702;ERATE=0.0008;THETA=0.0006;AC=244;AN=2184 GT:DS:GL:BD 0.11172161 0 1 62686515 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.948;LDAF=0.4534;AVGPOST=0.9716;RSQ=0.9568;ERATE=0.0047;THETA=0.0004;AC=998;AN=2184 GT:DS:GL:BD 0.45695969 0 1 62686533 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.766;LDAF=0.0021;AVGPOST=0.9979;RSQ=0.5861;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62686547 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.981;LDAF=0.3030;AVGPOST=0.9882;RSQ=0.9794;ERATE=0.0021;THETA=0.0002;AC=662;AN=2184 GT:DS:GL:BD 0.30311355 0 1 62686633 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8216;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62686671 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0034;AVGPOST=0.9969;RSQ=0.6624;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62686690 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.700;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.3766;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62686747 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.9662;AVGPOST=0.9961;RSQ=0.9542;ERATE=0.0006;THETA=0.0005;AC=2110;AN=2184 GT:DS:GL:BD 0.96611720 1 1 62686751 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.938;LDAF=0.0138;AVGPOST=0.9997;RSQ=0.9887;ERATE=0.0003;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62686756 . A AT 429 PASS INDEL;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0098;AVGPOST=0.9943;RSQ=0.7599;ERATE=0.0006;THETA=0.0009;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62686808 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.953;LDAF=0.2668;AVGPOST=0.9882;RSQ=0.9771;ERATE=0.0014;THETA=0.0003;AC=584;AN=2184 GT:DS:GL:BD 0.26739928 0 1 62686836 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0020;AVGPOST=0.9978;RSQ=0.5179;ERATE=0.0006;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62686941 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3102;AVGPOST=0.9989;RSQ=0.9977;ERATE=0.0004;THETA=0.0014;AC=678;AN=2184 GT:DS:GL:BD 0.31043956 0 1 62687073 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3089;AVGPOST=0.9987;RSQ=0.9976;ERATE=0.0003;THETA=0.0004;AC=675;AN=2184 GT:DS:GL:BD 0.30906594 0 1 62687078 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0094;AVGPOST=0.9993;RSQ=0.9678;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62687104 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.989;LDAF=0.3072;AVGPOST=0.9935;RSQ=0.9880;ERATE=0.0009;THETA=0.0004;AC=675;AN=2184 GT:DS:GL:BD 0.30906594 0 1 62687173 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5545;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62687207 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0029;AVGPOST=0.9992;RSQ=0.8790;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62687304 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1510;AVGPOST=0.9972;RSQ=0.9915;ERATE=0.0006;THETA=0.0007;AC=327;AN=2184 GT:DS:GL:BD 0.14972527 0 1 62687374 . AGAGTCTTGCTCTGTCGCCCAGGCTG A 16427 PASS INDEL;BAVGPOST=0.830;BRSQ=0.596;LDAF=0.2731;AVGPOST=0.9243;RSQ=0.8517;ERATE=0.0048;THETA=0.0002;AC=626;AN=2184 GT:DS:GL:BD 0.28663003 0 1 62687595 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.676;LDAF=0.9261;AVGPOST=0.9331;RSQ=0.6246;ERATE=0.0054;THETA=0.0004;AC=2067;AN=2184 GT:DS:GL:BD 0.94642860 1 1 62687649 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1525;AVGPOST=0.9913;RSQ=0.9731;ERATE=0.0012;THETA=0.0003;AC=331;AN=2184 GT:DS:GL:BD 0.15155677 0 1 62687651 . C CAAA 181 PASS INDEL;BAVGPOST=0.991;BRSQ=0.548;LDAF=0.0231;AVGPOST=0.9731;RSQ=0.5244;ERATE=0.0044;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 62687652 . C CT 10193 PASS INDEL;BAVGPOST=0.926;BRSQ=0.833;LDAF=0.3112;AVGPOST=0.8513;RSQ=0.7282;ERATE=0.0335;THETA=0.0005;AC=651;AN=2184 GT:DS:GL:BD 0.29807693 0 1 62687783 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.959;LDAF=0.3023;AVGPOST=0.9882;RSQ=0.9786;ERATE=0.0015;THETA=0.0005;AC=663;AN=2184 GT:DS:GL:BD 0.30357143 0 1 62687845 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.984;LDAF=0.3091;AVGPOST=0.9949;RSQ=0.9904;ERATE=0.0006;THETA=0.0006;AC=675;AN=2184 GT:DS:GL:BD 0.30906594 0 1 62687866 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.736;LDAF=0.0404;AVGPOST=0.9946;RSQ=0.9415;ERATE=0.0006;THETA=0.0003;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 62687897 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.959;LDAF=0.3115;AVGPOST=0.9864;RSQ=0.9760;ERATE=0.0016;THETA=0.0004;AC=681;AN=2184 GT:DS:GL:BD 0.31181318 0 1 62687908 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0028;AVGPOST=0.9952;RSQ=0.3241;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62687980 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.544;LDAF=0.0033;AVGPOST=0.9984;RSQ=0.8579;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62688003 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4145;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62688013 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62688022 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.986;LDAF=0.3076;AVGPOST=0.9951;RSQ=0.9910;ERATE=0.0009;THETA=0.0006;AC=673;AN=2184 GT:DS:GL:BD 0.30815017 0 1 62688122 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.3081;AVGPOST=0.9959;RSQ=0.9928;ERATE=0.0005;THETA=0.0006;AC=676;AN=2184 GT:DS:GL:BD 0.30952382 0 1 62688154 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.751;LDAF=0.0024;AVGPOST=0.9994;RSQ=0.8895;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62688247 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0023;AVGPOST=0.9972;RSQ=0.5183;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62688317 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.957;LDAF=0.2963;AVGPOST=0.9842;RSQ=0.9726;ERATE=0.0007;THETA=0.0004;AC=657;AN=2184 GT:DS:GL:BD 0.30082417 0 1 62688330 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.958;LDAF=0.2960;AVGPOST=0.9867;RSQ=0.9770;ERATE=0.0005;THETA=0.0003;AC=654;AN=2184 GT:DS:GL:BD 0.29945055 0 1 62688336 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.958;LDAF=0.2958;AVGPOST=0.9870;RSQ=0.9778;ERATE=0.0004;THETA=0.0008;AC=654;AN=2184 GT:DS:GL:BD 0.29945055 0 1 62688356 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.960;LDAF=0.2967;AVGPOST=0.9878;RSQ=0.9785;ERATE=0.0006;THETA=0.0002;AC=653;AN=2184 GT:DS:GL:BD 0.29899266 0 1 62688422 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.3090;AVGPOST=0.9920;RSQ=0.9852;ERATE=0.0011;THETA=0.0005;AC=676;AN=2184 GT:DS:GL:BD 0.30952382 0 1 62688463 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.452;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.3488;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62688509 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.664;LDAF=0.0114;AVGPOST=0.9945;RSQ=0.8087;ERATE=0.0005;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62688586 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0190;AVGPOST=0.9985;RSQ=0.9699;ERATE=0.0003;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 62688616 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0029;AVGPOST=0.9988;RSQ=0.8174;ERATE=0.0004;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62688671 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.9722;AVGPOST=0.9990;RSQ=0.9857;ERATE=0.0003;THETA=0.0004;AC=2124;AN=2184 GT:DS:GL:BD 0.97252744 1 1 62688704 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.926;LDAF=0.0139;AVGPOST=0.9993;RSQ=0.9765;ERATE=0.0003;THETA=0.0008;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62688735 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.733;LDAF=0.0025;AVGPOST=0.9977;RSQ=0.6278;ERATE=0.0010;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62688735 . TTA T 6800 PASS INDEL;BAVGPOST=0.938;BRSQ=0.859;LDAF=0.2332;AVGPOST=0.9455;RSQ=0.8920;ERATE=0.0073;THETA=0.0005;AC=518;AN=2184 GT:DS:GL:BD 0.23717949 0 1 62688736 . TA T 15141 PASS INDEL;BAVGPOST=0.932;BRSQ=0.850;LDAF=0.2649;AVGPOST=0.9263;RSQ=0.8662;ERATE=0.0151;THETA=0.0002;AC=564;AN=2184 GT:DS:GL:BD 0.25824177 0 1 62688887 . AG A 67 PASS INDEL;BAVGPOST=0.997;BRSQ=0.534;LDAF=0.0142;AVGPOST=0.9811;RSQ=0.4782;ERATE=0.0015;THETA=0.0018;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62688897 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.694;LDAF=0.0173;AVGPOST=0.9808;RSQ=0.5715;ERATE=0.0013;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 62688997 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.951;LDAF=0.3082;AVGPOST=0.9951;RSQ=0.9904;ERATE=0.0007;THETA=0.0023;AC=675;AN=2184 GT:DS:GL:BD 0.30906594 0 1 62689030 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.956;BRSQ=0.914;LDAF=0.2929;AVGPOST=0.9832;RSQ=0.9687;ERATE=0.0004;THETA=0.0005;AC=648;AN=2184 GT:DS:GL:BD 0.29670331 0 1 62689031 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.955;BRSQ=0.912;LDAF=0.2934;AVGPOST=0.9713;RSQ=0.9486;ERATE=0.0031;THETA=0.0004;AC=641;AN=2184 GT:DS:GL:BD 0.29349816 0 1 62689047 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0013;AVGPOST=0.9981;RSQ=0.3822;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62689074 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.667;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6613;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62689193 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0026;AVGPOST=0.9967;RSQ=0.4498;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62689386 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3103;AVGPOST=0.9973;RSQ=0.9946;ERATE=0.0007;THETA=0.0014;AC=678;AN=2184 GT:DS:GL:BD 0.31043956 0 1 62689395 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.719;LDAF=0.0026;AVGPOST=0.9983;RSQ=0.6823;ERATE=0.0009;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62689467 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0258;AVGPOST=0.9978;RSQ=0.9681;ERATE=0.0004;THETA=0.0005;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 62689505 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3078;AVGPOST=0.9969;RSQ=0.9934;ERATE=0.0007;THETA=0.0003;AC=674;AN=2184 GT:DS:GL:BD 0.30860806 0 1 62689525 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.734;LDAF=0.0027;AVGPOST=0.9963;RSQ=0.5149;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62689554 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3097;AVGPOST=0.9957;RSQ=0.9918;ERATE=0.0008;THETA=0.0006;AC=676;AN=2184 GT:DS:GL:BD 0.30952382 0 1 62689687 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3096;AVGPOST=0.9980;RSQ=0.9960;ERATE=0.0006;THETA=0.0003;AC=678;AN=2184 GT:DS:GL:BD 0.31043956 0 1 62689798 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.982;LDAF=0.0937;AVGPOST=0.9969;RSQ=0.9865;ERATE=0.0004;THETA=0.0005;AC=205;AN=2184 GT:DS:GL:BD 0.09386447 0 1 62689811 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6134;AVGPOST=0.9965;RSQ=0.9941;ERATE=0.0009;THETA=0.0002;AC=1339;AN=2184 GT:DS:GL:BD 0.61309522 1 1 62689940 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.968;LDAF=0.0351;AVGPOST=0.9993;RSQ=0.9907;ERATE=0.0003;THETA=0.0002;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 62690002 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9239;AVGPOST=0.9996;RSQ=0.9973;ERATE=0.0003;THETA=0.0007;AC=2018;AN=2184 GT:DS:GL:BD 0.92399269 1 1 62690194 rs56182064 T TG 7766 PASS INDEL;BAVGPOST=0.917;BRSQ=0.794;LDAF=0.2618;AVGPOST=0.9190;RSQ=0.8392;ERATE=0.0111;THETA=0.0006;AC=578;AN=2184 GT:DS:GL:BD 0.26465201 0 1 62690200 . TG T 30809 PASS INDEL;BAVGPOST=0.970;BRSQ=0.702;LDAF=0.9372;AVGPOST=0.9475;RSQ=0.6552;ERATE=0.0079;THETA=0.0002;AC=2082;AN=2184 GT:DS:GL:BD 0.95329672 1 1 62690201 . G GTT 7984 PASS INDEL;BAVGPOST=0.951;BRSQ=0.578;LDAF=0.9168;AVGPOST=0.8978;RSQ=0.4824;ERATE=0.0073;THETA=0.0006;AC=2067;AN=2184 GT:DS:GL:BD 0.94642860 1 1 62690231 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.488;LDAF=0.0118;AVGPOST=0.9840;RSQ=0.4598;ERATE=0.0020;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62690268 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.957;LDAF=0.0205;AVGPOST=0.9921;RSQ=0.8579;ERATE=0.0005;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 62690293 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3111;AVGPOST=0.9919;RSQ=0.9843;ERATE=0.0008;THETA=0.0002;AC=678;AN=2184 GT:DS:GL:BD 0.31043956 0 1 62690358 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.960;LDAF=0.0397;AVGPOST=0.9962;RSQ=0.9583;ERATE=0.0009;THETA=0.0008;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 62690489 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.3104;AVGPOST=0.9851;RSQ=0.9730;ERATE=0.0021;THETA=0.0003;AC=674;AN=2184 GT:DS:GL:BD 0.30860806 0 1 62690499 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.967;LDAF=0.9191;AVGPOST=0.9907;RSQ=0.9509;ERATE=0.0012;THETA=0.0006;AC=2016;AN=2184 GT:DS:GL:BD 0.92307693 1 1 62690514 . CT C 362 PASS INDEL;BAVGPOST=0.878;BRSQ=0.377;LDAF=0.1648;AVGPOST=0.7940;RSQ=0.3687;ERATE=0.0373;THETA=0.0008;AC=176;AN=2184 GT:DS:GL:BD 0.08058608 0 1 62690552 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.944;LDAF=0.0424;AVGPOST=0.9969;RSQ=0.9695;ERATE=0.0003;THETA=0.0006;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 62690581 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.945;LDAF=0.6021;AVGPOST=0.9522;RSQ=0.9226;ERATE=0.0059;THETA=0.0004;AC=1324;AN=2184 GT:DS:GL:BD 0.60622710 1 1 62690658 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5926;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62690700 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0200;AVGPOST=0.9963;RSQ=0.9258;ERATE=0.0007;THETA=0.0006;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 62690707 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.713;LDAF=0.0077;AVGPOST=0.9929;RSQ=0.6270;ERATE=0.0009;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62690810 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6139;AVGPOST=0.9978;RSQ=0.9962;ERATE=0.0004;THETA=0.0040;AC=1340;AN=2184 GT:DS:GL:BD 0.61355311 1 1 62690855 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.982;LDAF=0.4570;AVGPOST=0.9911;RSQ=0.9868;ERATE=0.0006;THETA=0.0003;AC=1001;AN=2184 GT:DS:GL:BD 0.45833334 0 1 62690868 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.915;LDAF=0.9035;AVGPOST=0.9750;RSQ=0.8975;ERATE=0.0020;THETA=0.0005;AC=1985;AN=2184 GT:DS:GL:BD 0.90888280 1 1 62690878 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.982;LDAF=0.6060;AVGPOST=0.9883;RSQ=0.9815;ERATE=0.0011;THETA=0.0005;AC=1326;AN=2184 GT:DS:GL:BD 0.60714287 1 1 62690916 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.983;LDAF=0.2138;AVGPOST=0.9944;RSQ=0.9878;ERATE=0.0009;THETA=0.0004;AC=468;AN=2184 GT:DS:GL:BD 0.21428572 0 1 62690953 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0007;AVGPOST=0.9992;RSQ=0.4492;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62691028 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.776;LDAF=0.0103;AVGPOST=0.9901;RSQ=0.6232;ERATE=0.0006;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62691043 . TG T 11501 PASS INDEL;BAVGPOST=0.975;BRSQ=0.956;LDAF=0.4615;AVGPOST=0.9431;RSQ=0.9182;ERATE=0.0077;THETA=0.0002;AC=1011;AN=2184 GT:DS:GL:BD 0.46291208 0 1 62691070 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.658;LDAF=0.0075;AVGPOST=0.9926;RSQ=0.5991;ERATE=0.0017;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62691078 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0375;AVGPOST=0.9980;RSQ=0.9758;ERATE=0.0005;THETA=0.0004;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 62691106 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.736;LDAF=0.0041;AVGPOST=0.9957;RSQ=0.5947;ERATE=0.0004;THETA=0.0028;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62691260 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.939;LDAF=0.9112;AVGPOST=0.9814;RSQ=0.9133;ERATE=0.0035;THETA=0.0003;AC=2004;AN=2184 GT:DS:GL:BD 0.91758239 1 1 62691261 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0020;AVGPOST=0.9973;RSQ=0.4805;ERATE=0.0005;THETA=0.0028;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62691303 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.758;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.9331;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62691338 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0802;AVGPOST=0.9979;RSQ=0.9893;ERATE=0.0004;THETA=0.0055;AC=173;AN=2184 GT:DS:GL:BD 0.07921246 0 1 62691379 rs36042430 A ATT 63781 PASS INDEL;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.6140;AVGPOST=0.9968;RSQ=0.9947;ERATE=0.0006;THETA=0.0004;AC=1341;AN=2184 GT:DS:GL:BD 0.61401099 1 1 62691424 . ATTTC A 133 PASS INDEL;BAVGPOST=0.999;BRSQ=0.721;LDAF=0.0025;AVGPOST=0.9965;RSQ=0.5106;ERATE=0.0004;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62691441 . TG T 119 PASS INDEL;BAVGPOST=0.946;BRSQ=0.370;LDAF=0.0637;AVGPOST=0.9197;RSQ=0.4853;ERATE=0.0083;THETA=0.0003;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 62691460 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9218;AVGPOST=0.9970;RSQ=0.9830;ERATE=0.0005;THETA=0.0013;AC=2015;AN=2184 GT:DS:GL:BD 0.92261904 1 1 62691515 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.2060;AVGPOST=0.9917;RSQ=0.9830;ERATE=0.0007;THETA=0.0004;AC=447;AN=2184 GT:DS:GL:BD 0.20467032 0 1 62691520 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.989;LDAF=0.4676;AVGPOST=0.9821;RSQ=0.9744;ERATE=0.0024;THETA=0.0027;AC=1022;AN=2184 GT:DS:GL:BD 0.46794870 0 1 62691558 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.933;LDAF=0.3045;AVGPOST=0.9887;RSQ=0.9797;ERATE=0.0007;THETA=0.0008;AC=666;AN=2184 GT:DS:GL:BD 0.30494505 0 1 62691569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.937;LDAF=0.2667;AVGPOST=0.9896;RSQ=0.9796;ERATE=0.0008;THETA=0.0005;AC=586;AN=2184 GT:DS:GL:BD 0.26831502 0 1 62691572 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.9223;AVGPOST=0.9971;RSQ=0.9835;ERATE=0.0006;THETA=0.0013;AC=2017;AN=2184 GT:DS:GL:BD 0.92353481 1 1 62691597 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.915;LDAF=0.1837;AVGPOST=0.9656;RSQ=0.9153;ERATE=0.0028;THETA=0.0008;AC=402;AN=2184 GT:DS:GL:BD 0.18406594 0 1 62691637 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.966;LDAF=0.9034;AVGPOST=0.9718;RSQ=0.8858;ERATE=0.0044;THETA=0.0016;AC=1992;AN=2184 GT:DS:GL:BD 0.91208792 1 1 62691679 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.591;LDAF=0.0029;AVGPOST=0.9966;RSQ=0.4833;ERATE=0.0008;THETA=0.0062;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62691723 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2694;AVGPOST=0.9949;RSQ=0.9903;ERATE=0.0004;THETA=0.0030;AC=589;AN=2184 GT:DS:GL:BD 0.26968864 0 1 62691829 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.885;LDAF=0.8821;AVGPOST=0.9307;RSQ=0.7549;ERATE=0.0068;THETA=0.0020;AC=1964;AN=2184 GT:DS:GL:BD 0.89926738 1 1 62691859 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.972;LDAF=0.0824;AVGPOST=0.9952;RSQ=0.9773;ERATE=0.0004;THETA=0.0065;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 62691932 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.694;LDAF=0.0061;AVGPOST=0.9907;RSQ=0.4394;ERATE=0.0013;THETA=0.0055;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62692073 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1629;AVGPOST=0.9962;RSQ=0.9891;ERATE=0.0005;THETA=0.0057;AC=352;AN=2184 GT:DS:GL:BD 0.16117217 0 1 62692092 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.4676;AVGPOST=0.9920;RSQ=0.9890;ERATE=0.0010;THETA=0.0009;AC=1022;AN=2184 GT:DS:GL:BD 0.46794870 0 1 62692191 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.988;LDAF=0.1252;AVGPOST=0.9964;RSQ=0.9886;ERATE=0.0003;THETA=0.0004;AC=271;AN=2184 GT:DS:GL:BD 0.12408425 0 1 62692216 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8394;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62692230 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0543;AVGPOST=0.9987;RSQ=0.9908;ERATE=0.0003;THETA=0.0005;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 62692256 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6215;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62692269 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5908;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62692271 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.4819;AVGPOST=0.9965;RSQ=0.9948;ERATE=0.0005;THETA=0.0005;AC=1055;AN=2184 GT:DS:GL:BD 0.48305860 0 1 62692367 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0348;AVGPOST=0.9999;RSQ=0.9987;ERATE=0.0003;THETA=0.0058;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 62692535 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8675;ERATE=0.0003;THETA=0.0059;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62692695 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0024;AVGPOST=0.9978;RSQ=0.6032;ERATE=0.0011;THETA=0.0055;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62692830 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0024;AVGPOST=0.9973;RSQ=0.5677;ERATE=0.0007;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62693006 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.976;LDAF=0.9693;AVGPOST=0.9971;RSQ=0.9586;ERATE=0.0006;THETA=0.0032;AC=2120;AN=2184 GT:DS:GL:BD 0.97069597 1 1 62693048 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0169;AVGPOST=0.9991;RSQ=0.9816;ERATE=0.0003;THETA=0.0048;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62693143 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.986;LDAF=0.0742;AVGPOST=0.9980;RSQ=0.9902;ERATE=0.0004;THETA=0.0016;AC=161;AN=2184 GT:DS:GL:BD 0.07371795 0 1 62693170 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4989;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62693194 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0097;AVGPOST=0.9967;RSQ=0.8654;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62693240 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.960;LDAF=0.0241;AVGPOST=0.9951;RSQ=0.9320;ERATE=0.0003;THETA=0.0004;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 62693352 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.978;LDAF=0.1433;AVGPOST=0.9920;RSQ=0.9764;ERATE=0.0005;THETA=0.0010;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 62693361 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.0597;AVGPOST=0.9984;RSQ=0.9898;ERATE=0.0004;THETA=0.0003;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 62693500 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0022;AVGPOST=0.9985;RSQ=0.7552;ERATE=0.0004;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62693531 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.9730;AVGPOST=0.9989;RSQ=0.9819;ERATE=0.0003;THETA=0.0003;AC=2126;AN=2184 GT:DS:GL:BD 0.97344321 1 1 62693536 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5291;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62693547 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.9732;AVGPOST=0.9985;RSQ=0.9792;ERATE=0.0003;THETA=0.0067;AC=2127;AN=2184 GT:DS:GL:BD 0.97390109 1 1 62693587 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0156;AVGPOST=0.9990;RSQ=0.9732;ERATE=0.0003;THETA=0.0008;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62693609 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7529;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62693757 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4659;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62693758 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62693807 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6724;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62693813 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.8695;AVGPOST=0.9993;RSQ=0.9975;ERATE=0.0003;THETA=0.0007;AC=1899;AN=2184 GT:DS:GL:BD 0.86950547 1 1 62693837 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0165;AVGPOST=0.9999;RSQ=0.9961;ERATE=0.0003;THETA=0.0015;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62693913 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62693941 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0090;AVGPOST=0.9993;RSQ=0.9621;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62693946 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0197;AVGPOST=0.9986;RSQ=0.9706;ERATE=0.0005;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 62693958 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.865;LDAF=0.0100;AVGPOST=0.9963;RSQ=0.8532;ERATE=0.0004;THETA=0.0014;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62694041 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.617;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6421;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62694136 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0024;AVGPOST=0.9991;RSQ=0.8730;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62694174 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2114;AVGPOST=0.9977;RSQ=0.9952;ERATE=0.0003;THETA=0.0002;AC=463;AN=2184 GT:DS:GL:BD 0.21199633 0 1 62694247 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.6456;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62694332 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7605;ERATE=0.0013;THETA=0.0027;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62694452 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.9601;AVGPOST=0.9993;RSQ=0.9912;ERATE=0.0004;THETA=0.0005;AC=2097;AN=2184 GT:DS:GL:BD 0.96016484 1 1 62694458 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5184;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62694474 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0081;AVGPOST=0.9983;RSQ=0.9043;ERATE=0.0003;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62694557 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62694676 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62694696 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0010;AVGPOST=0.9987;RSQ=0.4170;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62694705 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0184;AVGPOST=0.9997;RSQ=0.9919;ERATE=0.0003;THETA=0.0033;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 62695058 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.711;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7585;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62695364 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.761;LDAF=0.9246;AVGPOST=0.9417;RSQ=0.6738;ERATE=0.0077;THETA=0.0002;AC=2061;AN=2184 GT:DS:GL:BD 0.94368130 1 1 62695386 . AAAGAC A 15100 PASS INDEL;BAVGPOST=0.965;BRSQ=0.912;LDAF=0.2236;AVGPOST=0.9727;RSQ=0.9445;ERATE=0.0011;THETA=0.0003;AC=491;AN=2184 GT:DS:GL:BD 0.22481684 0 1 62695387 . AAGAC A 18361 PASS INDEL;BAVGPOST=0.966;BRSQ=0.916;LDAF=0.2288;AVGPOST=0.9713;RSQ=0.9439;ERATE=0.0009;THETA=0.0032;AC=498;AN=2184 GT:DS:GL:BD 0.22802198 0 1 62695480 . ATC A 207 PASS INDEL;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5987;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62695597 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9315;ERATE=0.0008;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62695665 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.6165;AVGPOST=0.9952;RSQ=0.9928;ERATE=0.0005;THETA=0.0002;AC=1346;AN=2184 GT:DS:GL:BD 0.61630034 1 1 62695827 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0047;AVGPOST=0.9979;RSQ=0.8269;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62695950 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8924;ERATE=0.0003;THETA=0.0039;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62695974 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.846;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8847;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62695982 . CTT C 552 PASS INDEL;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7792;ERATE=0.0004;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62696075 . CAG C 377 PASS INDEL;BAVGPOST=0.997;BRSQ=0.651;LDAF=0.0085;AVGPOST=0.9936;RSQ=0.6814;ERATE=0.0006;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62696122 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4969;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62696435 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0018;AVGPOST=0.9997;RSQ=0.9323;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62696480 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62696625 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62696653 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0147;AVGPOST=0.9994;RSQ=0.9813;ERATE=0.0003;THETA=0.0005;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 62696726 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62696833 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.8974;ERATE=0.0010;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62696996 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62697136 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0292;AVGPOST=0.9990;RSQ=0.9846;ERATE=0.0004;THETA=0.0006;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 62697211 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3297;AVGPOST=0.9990;RSQ=0.9983;ERATE=0.0003;THETA=0.0003;AC=721;AN=2184 GT:DS:GL:BD 0.33012819 0 1 62697225 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0024;AVGPOST=0.9991;RSQ=0.8739;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62697279 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62697366 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62697384 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0078;AVGPOST=0.9996;RSQ=0.9791;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62697405 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.8559;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62697514 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62697612 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.739;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6831;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62697753 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3282;AVGPOST=0.9936;RSQ=0.9889;ERATE=0.0010;THETA=0.0014;AC=717;AN=2184 GT:DS:GL:BD 0.32829669 0 1 62697771 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0183;AVGPOST=0.9992;RSQ=0.9815;ERATE=0.0003;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 62697843 . AG A 2995 PASS INDEL;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0283;AVGPOST=0.9992;RSQ=0.9862;ERATE=0.0003;THETA=0.0006;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 62697889 . CCTT C 2325 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0218;AVGPOST=0.9979;RSQ=0.9653;ERATE=0.0004;THETA=0.0002;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 62697908 . TG T 78 PASS INDEL;BAVGPOST=0.986;BRSQ=0.448;LDAF=0.0250;AVGPOST=0.9733;RSQ=0.5864;ERATE=0.0052;THETA=0.0007;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62697946 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.569;LDAF=0.0021;AVGPOST=0.9974;RSQ=0.4990;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62697957 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.725;LDAF=0.0104;AVGPOST=0.9920;RSQ=0.6984;ERATE=0.0013;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62698287 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5756;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62698293 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62698299 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.6240;ERATE=0.0005;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62698317 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6283;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62698613 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8586;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62698699 . CT C 107 PASS INDEL;BAVGPOST=0.997;BRSQ=0.544;LDAF=0.0040;AVGPOST=0.9922;RSQ=0.2572;ERATE=0.0014;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62698715 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0189;AVGPOST=0.9977;RSQ=0.9546;ERATE=0.0003;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 62698717 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7188;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62698723 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6933;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62698797 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4753;AVGPOST=0.9956;RSQ=0.9938;ERATE=0.0008;THETA=0.0005;AC=1039;AN=2184 GT:DS:GL:BD 0.47573259 0 1 62698815 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.985;LDAF=0.2711;AVGPOST=0.9973;RSQ=0.9946;ERATE=0.0007;THETA=0.0003;AC=594;AN=2184 GT:DS:GL:BD 0.27197802 0 1 62698879 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6851;ERATE=0.0003;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62699069 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2273;AVGPOST=0.9990;RSQ=0.9977;ERATE=0.0004;THETA=0.0004;AC=497;AN=2184 GT:DS:GL:BD 0.22756410 0 1 62699078 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62699109 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5918;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62699215 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0020;AVGPOST=0.9989;RSQ=0.7659;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62699250 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8671;ERATE=0.0003;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62699346 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.659;LDAF=0.0016;AVGPOST=0.9976;RSQ=0.4635;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62699425 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2271;AVGPOST=0.9991;RSQ=0.9979;ERATE=0.0004;THETA=0.0004;AC=497;AN=2184 GT:DS:GL:BD 0.22756410 0 1 62699583 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0018;AVGPOST=0.9998;RSQ=0.9523;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62699626 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9172;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62699724 . TGC T 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6947;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62699741 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.760;LDAF=0.0027;AVGPOST=0.9981;RSQ=0.7109;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62699813 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0071;AVGPOST=0.9994;RSQ=0.9600;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62699840 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6362;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62699842 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0580;AVGPOST=0.9995;RSQ=0.9959;ERATE=0.0003;THETA=0.0003;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 62699907 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6683;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62700023 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0225;AVGPOST=0.9998;RSQ=0.9961;ERATE=0.0003;THETA=0.0001;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 62700068 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.718;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5367;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62700138 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7461;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62700175 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.4740;AVGPOST=0.9965;RSQ=0.9951;ERATE=0.0006;THETA=0.0004;AC=1035;AN=2184 GT:DS:GL:BD 0.47390109 0 1 62700190 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.676;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7196;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62700279 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62700296 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2072;AVGPOST=0.9995;RSQ=0.9988;ERATE=0.0003;THETA=0.0019;AC=453;AN=2184 GT:DS:GL:BD 0.20741758 0 1 62700468 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0018;AVGPOST=0.9988;RSQ=0.7144;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62700586 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2266;AVGPOST=0.9988;RSQ=0.9974;ERATE=0.0004;THETA=0.0003;AC=495;AN=2184 GT:DS:GL:BD 0.22664835 0 1 62700631 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0021;AVGPOST=0.9990;RSQ=0.8024;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62700882 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0038;AVGPOST=0.9998;RSQ=0.9716;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62700972 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6323;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62701027 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6525;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62701164 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.2283;AVGPOST=0.9963;RSQ=0.9920;ERATE=0.0007;THETA=0.0003;AC=499;AN=2184 GT:DS:GL:BD 0.22847985 0 1 62701246 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4770;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62701316 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0039;AVGPOST=0.9986;RSQ=0.8470;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62701322 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7015;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62701596 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9535;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62701652 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8297;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62701671 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7169;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62701685 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0174;AVGPOST=0.9988;RSQ=0.9769;ERATE=0.0003;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 62701741 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2075;AVGPOST=0.9991;RSQ=0.9974;ERATE=0.0003;THETA=0.0004;AC=454;AN=2184 GT:DS:GL:BD 0.20787546 0 1 62701801 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0129;AVGPOST=0.9982;RSQ=0.9451;ERATE=0.0003;THETA=0.0006;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62701877 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9411;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62702053 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6355;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62702100 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0191;AVGPOST=0.9986;RSQ=0.9735;ERATE=0.0003;THETA=0.0005;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 62702108 . A AT 55 PASS INDEL;BAVGPOST=0.999;BRSQ=0.809;LDAF=0.0031;AVGPOST=0.9957;RSQ=0.4781;ERATE=0.0011;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62702206 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.6162;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62702333 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0098;AVGPOST=0.9986;RSQ=0.9345;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62702335 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.654;LDAF=0.0136;AVGPOST=0.9902;RSQ=0.7039;ERATE=0.0015;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62702404 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.533;LDAF=0.0019;AVGPOST=0.9974;RSQ=0.4248;ERATE=0.0006;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62702452 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0068;AVGPOST=0.9980;RSQ=0.8699;ERATE=0.0004;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62702472 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62702543 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.857;LDAF=0.0133;AVGPOST=0.9968;RSQ=0.9039;ERATE=0.0004;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 62702637 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.9600;AVGPOST=0.9976;RSQ=0.9763;ERATE=0.0004;THETA=0.0003;AC=2098;AN=2184 GT:DS:GL:BD 0.96062273 1 1 62702720 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.2273;AVGPOST=0.9990;RSQ=0.9977;ERATE=0.0004;THETA=0.0004;AC=498;AN=2184 GT:DS:GL:BD 0.22802198 0 1 62702754 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6701;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62702968 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4676;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62703034 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7066;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62703064 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0019;AVGPOST=0.9982;RSQ=0.6821;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62703075 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6533;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62703212 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.862;LDAF=0.0198;AVGPOST=0.9946;RSQ=0.8895;ERATE=0.0003;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 62703236 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2076;AVGPOST=0.9990;RSQ=0.9977;ERATE=0.0004;THETA=0.0004;AC=454;AN=2184 GT:DS:GL:BD 0.20787546 0 1 62703247 . CTTAA C 24 PASS INDEL;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7826;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62703328 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7393;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62703369 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.7900;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62703384 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62703439 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9136;ERATE=0.0004;THETA=0.0019;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62703470 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.911;LDAF=0.0036;AVGPOST=0.9990;RSQ=0.8977;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62703686 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0479;AVGPOST=0.9995;RSQ=0.9954;ERATE=0.0003;THETA=0.0004;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 62703687 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.751;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6057;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62703691 . GAT G 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4605;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62703855 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8888;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62703920 . G GT 32 PASS INDEL;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0042;AVGPOST=0.9949;RSQ=0.4880;ERATE=0.0009;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62703977 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0390;AVGPOST=0.9995;RSQ=0.9948;ERATE=0.0003;THETA=0.0008;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 62704030 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9582;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62704046 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62704047 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62704134 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2892;AVGPOST=0.9996;RSQ=0.9992;ERATE=0.0004;THETA=0.0005;AC=633;AN=2184 GT:DS:GL:BD 0.28983516 0 1 62704181 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0576;AVGPOST=1.0000;RSQ=0.9996;ERATE=0.0003;THETA=0.0002;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 62704285 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0068;AVGPOST=0.9990;RSQ=0.9370;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62704300 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.1339;AVGPOST=0.9977;RSQ=0.9917;ERATE=0.0003;THETA=0.0003;AC=291;AN=2184 GT:DS:GL:BD 0.13324176 0 1 62704325 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.967;LDAF=0.2069;AVGPOST=0.9930;RSQ=0.9839;ERATE=0.0011;THETA=0.0002;AC=454;AN=2184 GT:DS:GL:BD 0.20787546 0 1 62704326 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.899;LDAF=0.0205;AVGPOST=0.9961;RSQ=0.9322;ERATE=0.0004;THETA=0.0002;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 62704428 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4853;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62704625 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0008;AVGPOST=0.9998;RSQ=0.9110;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62704651 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62704654 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0044;AVGPOST=0.9990;RSQ=0.9102;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62704871 . TCCTGTCCTGCA T 488 PASS INDEL;BAVGPOST=0.999;BRSQ=0.674;LDAF=0.0023;AVGPOST=0.9976;RSQ=0.6056;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62704928 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4659;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62705071 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.721;LDAF=0.0046;AVGPOST=0.9957;RSQ=0.6133;ERATE=0.0010;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62705421 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0597;AVGPOST=0.9974;RSQ=0.9825;ERATE=0.0004;THETA=0.0003;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 62705542 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.573;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4385;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62705566 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.865;LDAF=0.1771;AVGPOST=0.9580;RSQ=0.9102;ERATE=0.0026;THETA=0.0005;AC=394;AN=2184 GT:DS:GL:BD 0.18040293 0 1 62705759 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0161;AVGPOST=0.9996;RSQ=0.9889;ERATE=0.0004;THETA=0.0007;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62705766 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.390;LDAF=0.0099;AVGPOST=0.9867;RSQ=0.4711;ERATE=0.0035;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62705801 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.966;LDAF=0.2008;AVGPOST=0.9920;RSQ=0.9830;ERATE=0.0010;THETA=0.0005;AC=441;AN=2184 GT:DS:GL:BD 0.20192307 0 1 62706020 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.986;LDAF=0.2235;AVGPOST=0.9946;RSQ=0.9890;ERATE=0.0013;THETA=0.0008;AC=491;AN=2184 GT:DS:GL:BD 0.22481684 0 1 62706071 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0087;AVGPOST=0.9978;RSQ=0.8894;ERATE=0.0004;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62706102 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.796;LDAF=0.0058;AVGPOST=0.9976;RSQ=0.8327;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62706131 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.969;LDAF=0.2724;AVGPOST=0.9910;RSQ=0.9828;ERATE=0.0011;THETA=0.0004;AC=600;AN=2184 GT:DS:GL:BD 0.27472529 0 1 62706335 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.606;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62706353 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.985;LDAF=0.0577;AVGPOST=0.9995;RSQ=0.9954;ERATE=0.0004;THETA=0.0003;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 62706453 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7030;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62706455 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5495;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62706640 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0468;AVGPOST=0.9979;RSQ=0.9857;ERATE=0.0003;THETA=0.0004;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 62706711 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0029;AVGPOST=0.9987;RSQ=0.8244;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62706844 rs3841630 GC G 30747 PASS INDEL;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.2238;AVGPOST=0.9964;RSQ=0.9922;ERATE=0.0006;THETA=0.0002;AC=489;AN=2184 GT:DS:GL:BD 0.22390109 0 1 62706859 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62706860 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62706931 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0153;AVGPOST=0.9995;RSQ=0.9849;ERATE=0.0003;THETA=0.0072;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62706978 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5225;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62706992 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.824;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.6921;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62707009 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7431;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62707152 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7727;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62707184 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0031;AVGPOST=0.9970;RSQ=0.6397;ERATE=0.0006;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62707205 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62707224 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.7610;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62707256 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2839;AVGPOST=0.9938;RSQ=0.9897;ERATE=0.0011;THETA=0.0003;AC=621;AN=2184 GT:DS:GL:BD 0.28434065 0 1 62707446 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2824;AVGPOST=0.9995;RSQ=0.9988;ERATE=0.0003;THETA=0.0003;AC=618;AN=2184 GT:DS:GL:BD 0.28296703 0 1 62707510 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.598;LDAF=0.0100;AVGPOST=0.9887;RSQ=0.5763;ERATE=0.0045;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62707613 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2831;AVGPOST=0.9983;RSQ=0.9966;ERATE=0.0005;THETA=0.0002;AC=620;AN=2184 GT:DS:GL:BD 0.28388280 0 1 62707653 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62707842 . GT G 9184 PASS INDEL;BAVGPOST=0.987;BRSQ=0.972;LDAF=0.2801;AVGPOST=0.9940;RSQ=0.9881;ERATE=0.0008;THETA=0.0004;AC=615;AN=2184 GT:DS:GL:BD 0.28159341 0 1 62707843 rs66633397 TG T 38844 PASS INDEL;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2839;AVGPOST=0.9976;RSQ=0.9952;ERATE=0.0007;THETA=0.0005;AC=622;AN=2184 GT:DS:GL:BD 0.28479853 0 1 62707988 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0121;AVGPOST=0.9987;RSQ=0.9591;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62708001 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.8995;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62708109 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0176;AVGPOST=0.9993;RSQ=0.9834;ERATE=0.0003;THETA=0.0010;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62708259 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2101;AVGPOST=0.9982;RSQ=0.9959;ERATE=0.0004;THETA=0.0002;AC=461;AN=2184 GT:DS:GL:BD 0.21108058 0 1 62708339 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3479;AVGPOST=0.9985;RSQ=0.9976;ERATE=0.0005;THETA=0.0004;AC=762;AN=2184 GT:DS:GL:BD 0.34890109 0 1 62708507 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0576;AVGPOST=0.9998;RSQ=0.9981;ERATE=0.0003;THETA=0.0003;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 62708616 . TG T 135 PASS INDEL;BAVGPOST=0.998;BRSQ=0.780;LDAF=0.0025;AVGPOST=0.9985;RSQ=0.7515;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62708675 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7258;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62708713 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2782;AVGPOST=0.9979;RSQ=0.9959;ERATE=0.0007;THETA=0.0003;AC=608;AN=2184 GT:DS:GL:BD 0.27838829 0 1 62708820 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.893;LDAF=0.0196;AVGPOST=0.9952;RSQ=0.9204;ERATE=0.0003;THETA=0.0005;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 62708831 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6583;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62708863 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4722;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62708915 . AC A 91 PASS INDEL;BAVGPOST=0.999;BRSQ=0.581;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6165;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62709312 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2031;AVGPOST=0.9992;RSQ=0.9980;ERATE=0.0003;THETA=0.0003;AC=444;AN=2184 GT:DS:GL:BD 0.20329671 0 1 62709339 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0033;AVGPOST=0.9985;RSQ=0.8261;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62709362 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.2788;AVGPOST=0.9974;RSQ=0.9954;ERATE=0.0004;THETA=0.0004;AC=611;AN=2184 GT:DS:GL:BD 0.27976191 0 1 62709375 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7666;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62709398 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62709410 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7202;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62709530 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0225;AVGPOST=0.9996;RSQ=0.9937;ERATE=0.0003;THETA=0.0004;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 62709600 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0544;AVGPOST=0.9999;RSQ=0.9989;ERATE=0.0003;THETA=0.0007;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 62709813 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6927;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62709874 . T TTA 7390 PASS INDEL;BAVGPOST=0.998;BRSQ=0.978;LDAF=0.0535;AVGPOST=0.9979;RSQ=0.9871;ERATE=0.0004;THETA=0.0003;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 62709875 . T TA 2714 PASS INDEL;BAVGPOST=0.998;BRSQ=0.978;LDAF=0.0517;AVGPOST=0.9974;RSQ=0.9828;ERATE=0.0005;THETA=0.0006;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 62709878 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0643;AVGPOST=0.9967;RSQ=0.9775;ERATE=0.0009;THETA=0.0006;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 62709936 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.5689;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62709960 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0023;AVGPOST=0.9963;RSQ=0.3962;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62710141 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7115;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62710298 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4938;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62710321 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62710332 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0058;AVGPOST=0.9994;RSQ=0.9510;ERATE=0.0004;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62710339 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.5990;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62710364 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0546;AVGPOST=0.9995;RSQ=0.9962;ERATE=0.0003;THETA=0.0005;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 62710527 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0028;AVGPOST=0.9988;RSQ=0.8236;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62710660 . AC A 223 PASS INDEL;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7494;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62710723 . A ATGCC 194 PASS INDEL;BAVGPOST=0.999;BRSQ=0.773;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.5085;ERATE=0.0009;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62710768 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0528;AVGPOST=0.9994;RSQ=0.9952;ERATE=0.0003;THETA=0.0003;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 62710909 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62710981 . CT C 9 PASS INDEL;BAVGPOST=0.999;BRSQ=0.642;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5101;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62711114 . TAGTTTAA T 169 PASS INDEL;BAVGPOST=0.999;BRSQ=0.759;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.5801;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62711115 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5149;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62711203 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.2951;AVGPOST=0.9984;RSQ=0.9968;ERATE=0.0005;THETA=0.0004;AC=646;AN=2184 GT:DS:GL:BD 0.29578754 0 1 62711338 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7276;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62711495 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.654;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62711534 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4979;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62711616 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62711710 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6525;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62711724 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62711763 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0175;AVGPOST=0.9994;RSQ=0.9850;ERATE=0.0003;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62711816 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.7601;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62711862 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62711902 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.718;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5777;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62711941 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4702;AVGPOST=0.9975;RSQ=0.9965;ERATE=0.0003;THETA=0.0007;AC=1027;AN=2184 GT:DS:GL:BD 0.47023809 0 1 62711957 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0057;AVGPOST=0.9991;RSQ=0.9289;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62712003 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62712106 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0023;AVGPOST=0.9986;RSQ=0.7377;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62712143 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.729;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7618;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62712277 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1399;AVGPOST=0.9989;RSQ=0.9966;ERATE=0.0003;THETA=0.0007;AC=306;AN=2184 GT:DS:GL:BD 0.14010990 0 1 62712282 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0080;AVGPOST=0.9994;RSQ=0.9654;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62712319 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4794;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62712324 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4765;AVGPOST=0.9965;RSQ=0.9950;ERATE=0.0007;THETA=0.0011;AC=1040;AN=2184 GT:DS:GL:BD 0.47619048 0 1 62712380 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0037;AVGPOST=0.9969;RSQ=0.6681;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62712523 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7612;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62712535 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0010;AVGPOST=0.9985;RSQ=0.5068;ERATE=0.0004;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62712551 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5790;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62712599 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4915;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62712689 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.668;LDAF=0.0048;AVGPOST=0.9952;RSQ=0.6370;ERATE=0.0009;THETA=0.0076;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62712845 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6753;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62713224 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9827;AVGPOST=0.9996;RSQ=0.9921;ERATE=0.0003;THETA=0.0007;AC=2146;AN=2184 GT:DS:GL:BD 0.98260075 1 1 62713246 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.3050;AVGPOST=0.9992;RSQ=0.9988;ERATE=0.0003;THETA=0.0068;AC=667;AN=2184 GT:DS:GL:BD 0.30540293 0 1 62713252 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9847;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62713333 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62713353 . A AGAG 194 PASS INDEL;BAVGPOST=0.998;BRSQ=0.718;LDAF=0.0021;AVGPOST=0.9991;RSQ=0.8148;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62713469 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3510;AVGPOST=0.9994;RSQ=0.9988;ERATE=0.0003;THETA=0.0005;AC=768;AN=2184 GT:DS:GL:BD 0.35164836 0 1 62713470 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0164;AVGPOST=0.9989;RSQ=0.9749;ERATE=0.0004;THETA=0.0029;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62713568 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0037;AVGPOST=0.9997;RSQ=0.9650;ERATE=0.0010;THETA=0.0081;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62713862 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0057;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62713901 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9735;ERATE=0.0003;THETA=0.0031;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62714049 . C CT 317 PASS INDEL;BAVGPOST=0.999;BRSQ=0.630;LDAF=0.0025;AVGPOST=0.9980;RSQ=0.6565;ERATE=0.0013;THETA=0.0045;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62714105 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62714163 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0058;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62714169 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0235;AVGPOST=0.9990;RSQ=0.9810;ERATE=0.0003;THETA=0.0036;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 62714257 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.758;LDAF=0.0193;AVGPOST=0.9899;RSQ=0.8100;ERATE=0.0007;THETA=0.0040;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62714280 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.705;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.3450;ERATE=0.0004;THETA=0.0126;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62714431 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0227;AVGPOST=0.9967;RSQ=0.9368;ERATE=0.0006;THETA=0.0055;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 62714575 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.968;LDAF=0.7301;AVGPOST=0.9632;RSQ=0.9292;ERATE=0.0041;THETA=0.0019;AC=1608;AN=2184 GT:DS:GL:BD 0.73626375 1 1 62714708 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0124;AVGPOST=0.9936;RSQ=0.7842;ERATE=0.0011;THETA=0.0017;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62714735 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.985;LDAF=0.2910;AVGPOST=0.9832;RSQ=0.9733;ERATE=0.0011;THETA=0.0052;AC=636;AN=2184 GT:DS:GL:BD 0.29120880 0 1 62714913 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7551;AVGPOST=0.9958;RSQ=0.9913;ERATE=0.0005;THETA=0.0005;AC=1653;AN=2184 GT:DS:GL:BD 0.75686812 1 1 62714918 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.7100;AVGPOST=0.9952;RSQ=0.9910;ERATE=0.0006;THETA=0.0006;AC=1553;AN=2184 GT:DS:GL:BD 0.71108061 1 1 62714965 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0180;AVGPOST=0.9982;RSQ=0.9623;ERATE=0.0004;THETA=0.0015;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62714992 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.736;LDAF=0.0080;AVGPOST=0.9959;RSQ=0.7752;ERATE=0.0007;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62715014 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.8098;AVGPOST=0.9951;RSQ=0.9877;ERATE=0.0005;THETA=0.0002;AC=1772;AN=2184 GT:DS:GL:BD 0.81135529 1 1 62715036 rs35519784 GTA G 28704 PASS INDEL;BAVGPOST=0.952;BRSQ=0.909;LDAF=0.6394;AVGPOST=0.9434;RSQ=0.9120;ERATE=0.0073;THETA=0.0006;AC=1398;AN=2184 GT:DS:GL:BD 0.64010990 1 1 62715073 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5642;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62715284 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.522;LDAF=0.0149;AVGPOST=0.9865;RSQ=0.6669;ERATE=0.0008;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 62715305 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.644;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.5890;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62715356 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0174;AVGPOST=0.9993;RSQ=0.9813;ERATE=0.0004;THETA=0.0001;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62715360 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.729;LDAF=0.0036;AVGPOST=0.9970;RSQ=0.6643;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62715361 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.901;LDAF=0.0154;AVGPOST=0.9977;RSQ=0.9403;ERATE=0.0004;THETA=0.0038;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 62715391 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.981;LDAF=0.7442;AVGPOST=0.9772;RSQ=0.9544;ERATE=0.0029;THETA=0.0007;AC=1637;AN=2184 GT:DS:GL:BD 0.74954212 1 1 62715513 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6694;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62715518 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62715519 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.732;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62715525 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7114;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62715635 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.4184;AVGPOST=0.9938;RSQ=0.9902;ERATE=0.0009;THETA=0.0003;AC=914;AN=2184 GT:DS:GL:BD 0.41849816 0 1 62715667 . C CT 102 PASS INDEL;BAVGPOST=0.998;BRSQ=0.745;LDAF=0.0077;AVGPOST=0.9909;RSQ=0.5388;ERATE=0.0028;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62715674 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0066;AVGPOST=0.9989;RSQ=0.9259;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62715760 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.729;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5095;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62715785 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.7534;AVGPOST=0.9960;RSQ=0.9911;ERATE=0.0008;THETA=0.0002;AC=1648;AN=2184 GT:DS:GL:BD 0.75457877 1 1 62715821 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.662;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7588;ERATE=0.0005;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62715906 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0176;AVGPOST=0.9973;RSQ=0.9426;ERATE=0.0006;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 62715907 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.651;LDAF=0.0052;AVGPOST=0.9935;RSQ=0.5323;ERATE=0.0015;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62716043 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6404;ERATE=0.0003;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62716115 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0253;AVGPOST=0.9997;RSQ=0.9942;ERATE=0.0003;THETA=0.0015;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 62716129 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0252;AVGPOST=0.9998;RSQ=0.9966;ERATE=0.0003;THETA=0.0007;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 62716161 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.981;LDAF=0.2041;AVGPOST=0.9937;RSQ=0.9860;ERATE=0.0009;THETA=0.0002;AC=445;AN=2184 GT:DS:GL:BD 0.20375457 0 1 62716221 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.894;LDAF=0.0094;AVGPOST=0.9981;RSQ=0.9068;ERATE=0.0003;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62716264 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7435;AVGPOST=0.9989;RSQ=0.9973;ERATE=0.0004;THETA=0.0004;AC=1626;AN=2184 GT:DS:GL:BD 0.74450547 1 1 62716277 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0147;AVGPOST=0.9998;RSQ=0.9941;ERATE=0.0003;THETA=0.0002;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 62716323 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4367;AVGPOST=0.9968;RSQ=0.9952;ERATE=0.0005;THETA=0.0002;AC=956;AN=2184 GT:DS:GL:BD 0.43772894 0 1 62716353 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7131;AVGPOST=0.9979;RSQ=0.9963;ERATE=0.0005;THETA=0.0004;AC=1560;AN=2184 GT:DS:GL:BD 0.71428573 1 1 62716358 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6016;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62716448 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7434;AVGPOST=0.9989;RSQ=0.9975;ERATE=0.0004;THETA=0.0006;AC=1626;AN=2184 GT:DS:GL:BD 0.74450547 1 1 62716575 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0148;AVGPOST=0.9996;RSQ=0.9886;ERATE=0.0003;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 62716603 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7986;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62716677 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.8168;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62716693 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5703;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62716806 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.7584;AVGPOST=0.9984;RSQ=0.9962;ERATE=0.0005;THETA=0.0046;AC=1658;AN=2184 GT:DS:GL:BD 0.75915754 1 1 62716853 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0108;AVGPOST=0.9985;RSQ=0.9487;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62716869 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.966;LDAF=0.0169;AVGPOST=0.9996;RSQ=0.9892;ERATE=0.0003;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 62716946 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5255;ERATE=0.0008;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62716992 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.856;LDAF=0.0043;AVGPOST=0.9987;RSQ=0.8714;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62717025 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6853;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62717029 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9331;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62717034 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7810;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62717045 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.952;LDAF=0.0340;AVGPOST=0.9952;RSQ=0.9450;ERATE=0.0005;THETA=0.0003;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 62717261 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6888;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62717274 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7299;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62717351 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2426;AVGPOST=0.9963;RSQ=0.9928;ERATE=0.0003;THETA=0.0004;AC=532;AN=2184 GT:DS:GL:BD 0.24358974 0 1 62717358 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2426;AVGPOST=0.9964;RSQ=0.9928;ERATE=0.0004;THETA=0.0005;AC=532;AN=2184 GT:DS:GL:BD 0.24358974 0 1 62717392 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0353;AVGPOST=0.9988;RSQ=0.9853;ERATE=0.0003;THETA=0.0005;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 62717393 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.959;LDAF=0.7298;AVGPOST=0.9753;RSQ=0.9526;ERATE=0.0034;THETA=0.0006;AC=1605;AN=2184 GT:DS:GL:BD 0.73489010 1 1 62717395 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.771;LDAF=0.0116;AVGPOST=0.9938;RSQ=0.7788;ERATE=0.0006;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62717414 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.957;LDAF=0.7298;AVGPOST=0.9745;RSQ=0.9520;ERATE=0.0023;THETA=0.0004;AC=1604;AN=2184 GT:DS:GL:BD 0.73443222 1 1 62717532 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.579;LDAF=0.0034;AVGPOST=0.9964;RSQ=0.5308;ERATE=0.0008;THETA=0.0043;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62717589 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.925;LDAF=0.7572;AVGPOST=0.9512;RSQ=0.8988;ERATE=0.0065;THETA=0.0007;AC=1673;AN=2184 GT:DS:GL:BD 0.76602566 1 1 62717759 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1200;AVGPOST=0.9989;RSQ=0.9961;ERATE=0.0003;THETA=0.0009;AC=262;AN=2184 GT:DS:GL:BD 0.11996337 0 1 62717773 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0056;AVGPOST=0.9996;RSQ=0.9651;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62717796 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0297;AVGPOST=0.9991;RSQ=0.9890;ERATE=0.0003;THETA=0.0004;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 62717814 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.863;LDAF=0.0017;AVGPOST=0.9996;RSQ=0.9051;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62718059 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9871;ERATE=0.0003;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62718135 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62718202 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7493;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62718247 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5404;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62718318 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0024;AVGPOST=0.9991;RSQ=0.8483;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62718364 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9866;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62718547 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62718624 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62718719 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9525;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62718754 . G GT 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.701;LDAF=0.0016;AVGPOST=0.9982;RSQ=0.5980;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62718804 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62718864 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62718940 . CTTTAGCCG C 307 PASS INDEL;BAVGPOST=0.999;BRSQ=0.716;LDAF=0.0033;AVGPOST=0.9968;RSQ=0.5880;ERATE=0.0009;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62718954 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0106;AVGPOST=0.9997;RSQ=0.9897;ERATE=0.0003;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 62718992 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62719046 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9479;ERATE=0.0003;THETA=0.0033;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62719050 . G GTTTCT 239 PASS INDEL;BAVGPOST=0.999;BRSQ=0.521;LDAF=0.0037;AVGPOST=0.9983;RSQ=0.7963;ERATE=0.0006;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62719068 . T TC 31 PASS INDEL;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4543;ERATE=0.0005;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62719141 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.977;LDAF=0.0635;AVGPOST=0.9908;RSQ=0.9415;ERATE=0.0020;THETA=0.0010;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 62719151 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.591;LDAF=0.0043;AVGPOST=0.9949;RSQ=0.5650;ERATE=0.0009;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62719215 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.954;BRSQ=0.907;LDAF=0.7096;AVGPOST=0.9423;RSQ=0.8965;ERATE=0.0070;THETA=0.0003;AC=1583;AN=2184 GT:DS:GL:BD 0.72481686 1 1 62719231 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.872;LDAF=0.2324;AVGPOST=0.9784;RSQ=0.9574;ERATE=0.0006;THETA=0.0002;AC=519;AN=2184 GT:DS:GL:BD 0.23763736 0 1 62719367 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8015;ERATE=0.0005;THETA=0.0019;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62719373 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5940;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62719376 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.782;LDAF=0.0027;AVGPOST=0.9974;RSQ=0.6256;ERATE=0.0011;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62719473 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.4129;AVGPOST=0.9971;RSQ=0.9961;ERATE=0.0003;THETA=0.0003;AC=902;AN=2184 GT:DS:GL:BD 0.41300365 0 1 62719593 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0224;AVGPOST=0.9979;RSQ=0.9733;ERATE=0.0004;THETA=0.0005;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 62719602 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0242;AVGPOST=0.9973;RSQ=0.9622;ERATE=0.0006;THETA=0.0004;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 62719653 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62719696 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7210;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62719786 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.685;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5449;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62719808 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.8036;AVGPOST=0.9981;RSQ=0.9949;ERATE=0.0003;THETA=0.0004;AC=1757;AN=2184 GT:DS:GL:BD 0.80448717 1 1 62719839 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0563;AVGPOST=0.9991;RSQ=0.9931;ERATE=0.0003;THETA=0.0032;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 62719861 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0558;AVGPOST=0.9989;RSQ=0.9915;ERATE=0.0004;THETA=0.0003;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 62719905 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9561;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62720039 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.673;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8610;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62720062 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0017;AVGPOST=0.9979;RSQ=0.5458;ERATE=0.0004;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62720068 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0163;AVGPOST=0.9989;RSQ=0.9703;ERATE=0.0004;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62720123 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0627;AVGPOST=0.9992;RSQ=0.9938;ERATE=0.0003;THETA=0.0004;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 62720128 rs60086023 G GCCAATACA 34954 PASS INDEL;BAVGPOST=0.931;BRSQ=0.867;LDAF=0.2707;AVGPOST=0.9644;RSQ=0.9424;ERATE=0.0010;THETA=0.0004;AC=613;AN=2184 GT:DS:GL:BD 0.28067765 0 1 62720129 rs56667273 G GTGGCAGAGA 9988 PASS INDEL;BAVGPOST=0.870;BRSQ=0.558;LDAF=0.1528;AVGPOST=0.8959;RSQ=0.7157;ERATE=0.0009;THETA=0.0004;AC=291;AN=2184 GT:DS:GL:BD 0.13324176 0 1 62720165 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.738;LDAF=0.0253;AVGPOST=0.9895;RSQ=0.8375;ERATE=0.0005;THETA=0.0003;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 62720166 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.737;LDAF=0.0111;AVGPOST=0.9931;RSQ=0.7471;ERATE=0.0025;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62720233 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.931;LDAF=0.7138;AVGPOST=0.9516;RSQ=0.9057;ERATE=0.0135;THETA=0.0011;AC=1568;AN=2184 GT:DS:GL:BD 0.71794873 1 1 62720273 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.945;LDAF=0.0236;AVGPOST=0.9948;RSQ=0.9282;ERATE=0.0003;THETA=0.0002;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 62720325 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.972;LDAF=0.2097;AVGPOST=0.9927;RSQ=0.9844;ERATE=0.0005;THETA=0.0005;AC=458;AN=2184 GT:DS:GL:BD 0.20970696 0 1 62720372 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.984;LDAF=0.2132;AVGPOST=0.9934;RSQ=0.9860;ERATE=0.0009;THETA=0.0008;AC=465;AN=2184 GT:DS:GL:BD 0.21291208 0 1 62720491 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1223;AVGPOST=0.9973;RSQ=0.9900;ERATE=0.0005;THETA=0.0005;AC=264;AN=2184 GT:DS:GL:BD 0.12087912 0 1 62720707 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.606;LDAF=0.0032;AVGPOST=0.9967;RSQ=0.5782;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62720708 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0028;AVGPOST=0.9962;RSQ=0.4690;ERATE=0.0008;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62720743 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0054;AVGPOST=0.9966;RSQ=0.7503;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62720749 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.510;LDAF=0.0040;AVGPOST=0.9957;RSQ=0.5675;ERATE=0.0010;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62720791 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0146;AVGPOST=0.9964;RSQ=0.8928;ERATE=0.0007;THETA=0.0022;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 62721133 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0025;AVGPOST=0.9973;RSQ=0.5745;ERATE=0.0006;THETA=0.0039;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62721143 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0324;AVGPOST=0.9986;RSQ=0.9826;ERATE=0.0003;THETA=0.0004;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 62721173 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0212;AVGPOST=0.9995;RSQ=0.9918;ERATE=0.0003;THETA=0.0010;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 62721234 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1554;AVGPOST=0.9983;RSQ=0.9954;ERATE=0.0004;THETA=0.0047;AC=338;AN=2184 GT:DS:GL:BD 0.15476191 0 1 62721442 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5546;ERATE=0.0004;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62721496 . GT G 15 PASS INDEL;BAVGPOST=0.994;BRSQ=0.135;LDAF=0.0238;AVGPOST=0.9599;RSQ=0.3490;ERATE=0.0016;THETA=0.0023;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62721518 . C CA 5981 PASS INDEL;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0311;AVGPOST=0.9975;RSQ=0.9707;ERATE=0.0005;THETA=0.0011;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 62721604 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6978;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62721842 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.3692;ERATE=0.0005;THETA=0.0079;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62722211 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.5547;ERATE=0.0005;THETA=0.0043;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62722213 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0207;AVGPOST=0.9986;RSQ=0.9755;ERATE=0.0003;THETA=0.0004;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 62722297 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.881;LDAF=0.0131;AVGPOST=0.9987;RSQ=0.9574;ERATE=0.0004;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 62722298 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.657;LDAF=0.0203;AVGPOST=0.9751;RSQ=0.5112;ERATE=0.0060;THETA=0.0057;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 62722558 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7475;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62722574 . TA T 294 PASS INDEL;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0037;AVGPOST=0.9991;RSQ=0.8810;ERATE=0.0004;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62722576 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8064;ERATE=0.0005;THETA=0.0101;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62722579 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0044;AVGPOST=0.9988;RSQ=0.8994;ERATE=0.0003;THETA=0.0035;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62722780 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0070;AVGPOST=0.9985;RSQ=0.9039;ERATE=0.0003;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62722782 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4468;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62722796 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0089;AVGPOST=0.9995;RSQ=0.9752;ERATE=0.0004;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62722834 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.923;LDAF=0.0135;AVGPOST=0.9992;RSQ=0.9707;ERATE=0.0004;THETA=0.0014;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 62722836 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0068;AVGPOST=0.9980;RSQ=0.8675;ERATE=0.0005;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62722920 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.762;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8161;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62722921 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0019;AVGPOST=0.9972;RSQ=0.3488;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62722925 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0090;AVGPOST=0.9992;RSQ=0.9571;ERATE=0.0003;THETA=0.0011;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62722960 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.952;LDAF=0.0162;AVGPOST=0.9963;RSQ=0.9121;ERATE=0.0004;THETA=0.0022;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62723039 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.1078;AVGPOST=0.9981;RSQ=0.9920;ERATE=0.0005;THETA=0.0007;AC=234;AN=2184 GT:DS:GL:BD 0.10714286 0 1 62723139 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7519;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62723207 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1259;AVGPOST=0.9996;RSQ=0.9986;ERATE=0.0003;THETA=0.0003;AC=274;AN=2184 GT:DS:GL:BD 0.12545788 0 1 62723226 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0054;AVGPOST=0.9992;RSQ=0.9345;ERATE=0.0004;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62723384 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0175;AVGPOST=0.9993;RSQ=0.9827;ERATE=0.0003;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62723390 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0036;AVGPOST=0.9994;RSQ=0.9287;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62723486 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7146;AVGPOST=0.9981;RSQ=0.9968;ERATE=0.0003;THETA=0.0013;AC=1563;AN=2184 GT:DS:GL:BD 0.71565932 1 1 62723566 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2251;AVGPOST=0.9970;RSQ=0.9941;ERATE=0.0006;THETA=0.0003;AC=492;AN=2184 GT:DS:GL:BD 0.22527473 0 1 62723617 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1247;AVGPOST=0.9996;RSQ=0.9986;ERATE=0.0003;THETA=0.0003;AC=272;AN=2184 GT:DS:GL:BD 0.12454212 0 1 62723912 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2349;AVGPOST=0.9997;RSQ=0.9994;ERATE=0.0003;THETA=0.0003;AC=514;AN=2184 GT:DS:GL:BD 0.23534799 0 1 62723954 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.3164;AVGPOST=0.9959;RSQ=0.9940;ERATE=0.0005;THETA=0.0003;AC=691;AN=2184 GT:DS:GL:BD 0.31639194 0 1 62724080 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6907;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62724174 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8774;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62724269 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7834;ERATE=0.0013;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62724311 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0088;AVGPOST=0.9998;RSQ=0.9874;ERATE=0.0003;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62724318 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1051;AVGPOST=0.9989;RSQ=0.9957;ERATE=0.0003;THETA=0.0005;AC=228;AN=2184 GT:DS:GL:BD 0.10439561 0 1 62724332 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62724453 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3159;AVGPOST=0.9992;RSQ=0.9986;ERATE=0.0005;THETA=0.0003;AC=691;AN=2184 GT:DS:GL:BD 0.31639194 0 1 62724463 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5834;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62724501 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8259;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62724515 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3157;AVGPOST=0.9996;RSQ=0.9993;ERATE=0.0003;THETA=0.0003;AC=691;AN=2184 GT:DS:GL:BD 0.31639194 0 1 62724547 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0208;AVGPOST=0.9994;RSQ=0.9870;ERATE=0.0003;THETA=0.0005;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 62724753 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3163;AVGPOST=0.9985;RSQ=0.9973;ERATE=0.0005;THETA=0.0006;AC=691;AN=2184 GT:DS:GL:BD 0.31639194 0 1 62724974 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8220;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62725216 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0096;AVGPOST=0.9979;RSQ=0.8951;ERATE=0.0006;THETA=0.0020;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62725217 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.7123;AVGPOST=0.9963;RSQ=0.9921;ERATE=0.0007;THETA=0.0005;AC=1560;AN=2184 GT:DS:GL:BD 0.71428573 1 1 62725234 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.678;LDAF=0.0016;AVGPOST=0.9975;RSQ=0.3493;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62725239 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.578;LDAF=0.0023;AVGPOST=0.9984;RSQ=0.7097;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62725591 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0087;AVGPOST=0.9998;RSQ=0.9881;ERATE=0.0003;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62725619 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.700;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62725620 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.5314;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62725644 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0176;AVGPOST=0.9996;RSQ=0.9903;ERATE=0.0003;THETA=0.0006;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62725712 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0087;AVGPOST=0.9998;RSQ=0.9881;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62725717 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5281;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62725748 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.657;LDAF=0.0029;AVGPOST=0.9982;RSQ=0.7486;ERATE=0.0004;THETA=0.0025;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62725765 . GCT G 315 PASS INDEL;BAVGPOST=0.992;BRSQ=0.951;LDAF=0.0673;AVGPOST=0.9829;RSQ=0.9075;ERATE=0.0006;THETA=0.0004;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 62725767 rs34675409 TCTC T 5933 PASS INDEL;BAVGPOST=0.993;BRSQ=0.955;LDAF=0.0693;AVGPOST=0.9818;RSQ=0.9070;ERATE=0.0005;THETA=0.0004;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 62725771 . CTCA C 1609 PASS INDEL;BAVGPOST=0.993;BRSQ=0.956;LDAF=0.0670;AVGPOST=0.9842;RSQ=0.9162;ERATE=0.0004;THETA=0.0002;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 62725794 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9144;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62725851 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7145;AVGPOST=0.9989;RSQ=0.9978;ERATE=0.0003;THETA=0.0006;AC=1563;AN=2184 GT:DS:GL:BD 0.71565932 1 1 62725873 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4237;AVGPOST=0.9982;RSQ=0.9970;ERATE=0.0006;THETA=0.0004;AC=926;AN=2184 GT:DS:GL:BD 0.42399266 0 1 62725941 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0094;AVGPOST=0.9985;RSQ=0.9332;ERATE=0.0004;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62725964 . C CTG 1990 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0088;AVGPOST=0.9998;RSQ=0.9877;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62725976 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6633;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62726028 . G GTC 2304 PASS INDEL;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0094;AVGPOST=0.9988;RSQ=0.9446;ERATE=0.0004;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62726046 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.978;LDAF=0.8032;AVGPOST=0.9876;RSQ=0.9704;ERATE=0.0031;THETA=0.0003;AC=1762;AN=2184 GT:DS:GL:BD 0.80677658 1 1 62726095 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8795;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62726134 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1074;AVGPOST=0.9996;RSQ=0.9982;ERATE=0.0003;THETA=0.0003;AC=234;AN=2184 GT:DS:GL:BD 0.10714286 0 1 62726195 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0030;AVGPOST=0.9993;RSQ=0.8944;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62726261 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.672;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62726310 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0087;AVGPOST=1.0000;RSQ=0.9975;ERATE=0.0003;THETA=0.0009;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62726508 . GCT G 144 PASS INDEL;BAVGPOST=0.987;BRSQ=0.692;LDAF=0.0349;AVGPOST=0.9644;RSQ=0.5682;ERATE=0.0120;THETA=0.0004;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 62726595 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62726692 . CA C 37 PASS INDEL;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0044;AVGPOST=0.9981;RSQ=0.8236;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62726848 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.937;BRSQ=0.885;LDAF=0.4343;AVGPOST=0.9197;RSQ=0.8730;ERATE=0.0128;THETA=0.0003;AC=969;AN=2184 GT:DS:GL:BD 0.44368133 0 1 62726957 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0041;AVGPOST=0.9992;RSQ=0.9286;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62726979 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0038;AVGPOST=0.9995;RSQ=0.9466;ERATE=0.0003;THETA=0.0043;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62727014 . TAG T 680 PASS INDEL;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0109;AVGPOST=0.9990;RSQ=0.9619;ERATE=0.0003;THETA=0.0002;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62727029 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.941;LDAF=0.0181;AVGPOST=0.9990;RSQ=0.9748;ERATE=0.0003;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 62727055 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.961;LDAF=0.0205;AVGPOST=0.9989;RSQ=0.9787;ERATE=0.0004;THETA=0.0003;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 62727137 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6352;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62727141 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5016;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62727196 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62727204 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6786;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62727348 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0017;AVGPOST=0.9987;RSQ=0.7763;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62727393 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0064;AVGPOST=1.0000;RSQ=0.9966;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62727596 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7716;AVGPOST=0.9991;RSQ=0.9980;ERATE=0.0003;THETA=0.0003;AC=1688;AN=2184 GT:DS:GL:BD 0.77289379 1 1 62727789 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.855;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9047;ERATE=0.0004;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62727796 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7056;AVGPOST=0.9991;RSQ=0.9981;ERATE=0.0004;THETA=0.0008;AC=1543;AN=2184 GT:DS:GL:BD 0.70650184 1 1 62727803 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.902;LDAF=0.0221;AVGPOST=0.9940;RSQ=0.8933;ERATE=0.0003;THETA=0.0002;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 62727814 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8388;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62727856 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9221;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62727857 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7875;ERATE=0.0006;THETA=0.0029;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62727901 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9267;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62727968 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7084;AVGPOST=0.9989;RSQ=0.9976;ERATE=0.0006;THETA=0.0005;AC=1549;AN=2184 GT:DS:GL:BD 0.70924908 1 1 62728026 . CA C 340 PASS INDEL;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7652;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62728072 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0066;AVGPOST=0.9986;RSQ=0.9166;ERATE=0.0005;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62728101 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.8968;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62728156 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7081;AVGPOST=0.9978;RSQ=0.9958;ERATE=0.0006;THETA=0.0004;AC=1548;AN=2184 GT:DS:GL:BD 0.70879120 1 1 62728188 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9256;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62728249 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.7138;AVGPOST=0.9978;RSQ=0.9959;ERATE=0.0005;THETA=0.0012;AC=1563;AN=2184 GT:DS:GL:BD 0.71565932 1 1 62728326 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9081;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62728334 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62728403 . A AG 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6688;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62728477 . AG A 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4862;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62728498 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62728596 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7169;AVGPOST=0.9997;RSQ=0.9993;ERATE=0.0003;THETA=0.0006;AC=1568;AN=2184 GT:DS:GL:BD 0.71794873 1 1 62728607 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0065;AVGPOST=0.9999;RSQ=0.9898;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62728616 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62728628 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2043;AVGPOST=0.9993;RSQ=0.9982;ERATE=0.0003;THETA=0.0003;AC=447;AN=2184 GT:DS:GL:BD 0.20467032 0 1 62728648 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62728717 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62728784 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7171;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1568;AN=2184 GT:DS:GL:BD 0.71794873 1 1 62728825 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62728831 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62728838 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7171;AVGPOST=1.0000;RSQ=0.9999;ERATE=0.0003;THETA=0.0003;AC=1568;AN=2184 GT:DS:GL:BD 0.71794873 1 1 62728843 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62728861 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7175;AVGPOST=0.9999;RSQ=0.9997;ERATE=0.0003;THETA=0.0003;AC=1569;AN=2184 GT:DS:GL:BD 0.71840662 1 1 62728894 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62728902 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62728918 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7171;AVGPOST=0.9999;RSQ=0.9994;ERATE=0.0003;THETA=0.0010;AC=1568;AN=2184 GT:DS:GL:BD 0.71794873 1 1 62728995 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62729009 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62729015 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7113;AVGPOST=0.9997;RSQ=0.9994;ERATE=0.0003;THETA=0.0003;AC=1555;AN=2184 GT:DS:GL:BD 0.71199632 1 1 62729282 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7141;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62729329 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0023;AVGPOST=0.9998;RSQ=0.9636;ERATE=0.0003;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62729382 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7173;AVGPOST=0.9989;RSQ=0.9977;ERATE=0.0004;THETA=0.0003;AC=1569;AN=2184 GT:DS:GL:BD 0.71840662 1 1 62729458 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7063;AVGPOST=0.9993;RSQ=0.9986;ERATE=0.0003;THETA=0.0067;AC=1544;AN=2184 GT:DS:GL:BD 0.70695972 1 1 62729812 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5011;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62729818 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.989;LDAF=0.7160;AVGPOST=0.9825;RSQ=0.9688;ERATE=0.0021;THETA=0.0040;AC=1572;AN=2184 GT:DS:GL:BD 0.71978021 1 1 62729823 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.4267;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62729893 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.698;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5770;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62729945 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0206;AVGPOST=0.9981;RSQ=0.9666;ERATE=0.0003;THETA=0.0003;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 62729946 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0136;AVGPOST=0.9990;RSQ=0.9666;ERATE=0.0005;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 62730124 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7559;ERATE=0.0003;THETA=0.0076;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62730175 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.5843;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62730255 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62730299 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6459;ERATE=0.0006;THETA=0.0183;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62730404 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.871;LDAF=0.0027;AVGPOST=0.9995;RSQ=0.9188;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62730417 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.4095;AVGPOST=0.9936;RSQ=0.9906;ERATE=0.0008;THETA=0.0054;AC=896;AN=2184 GT:DS:GL:BD 0.41025642 0 1 62730496 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2278;AVGPOST=0.9972;RSQ=0.9937;ERATE=0.0003;THETA=0.0003;AC=500;AN=2184 GT:DS:GL:BD 0.22893773 0 1 62730589 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3485;AVGPOST=0.9948;RSQ=0.9908;ERATE=0.0007;THETA=0.0004;AC=762;AN=2184 GT:DS:GL:BD 0.34890109 0 1 62730599 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.3959;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62730649 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6094;ERATE=0.0004;THETA=0.0061;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62730733 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.741;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4301;ERATE=0.0005;THETA=0.0051;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62730782 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0490;AVGPOST=0.9957;RSQ=0.9661;ERATE=0.0003;THETA=0.0003;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 62730845 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.959;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9273;ERATE=0.0007;THETA=0.0015;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62730903 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62730907 . C CT 4859 PASS INDEL;BAVGPOST=0.950;BRSQ=0.751;LDAF=0.1325;AVGPOST=0.9006;RSQ=0.6569;ERATE=0.0357;THETA=0.0006;AC=226;AN=2184 GT:DS:GL:BD 0.10347985 0 1 62731121 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.847;LDAF=0.0030;AVGPOST=0.9991;RSQ=0.8598;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62731189 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0090;AVGPOST=0.9995;RSQ=0.9717;ERATE=0.0003;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62731193 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0186;AVGPOST=0.9967;RSQ=0.9347;ERATE=0.0005;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 62731275 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.672;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0039;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62731297 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9282;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62731312 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0513;AVGPOST=0.9995;RSQ=0.9954;ERATE=0.0003;THETA=0.0007;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 62731346 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0607;AVGPOST=0.9990;RSQ=0.9930;ERATE=0.0003;THETA=0.0041;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 62731503 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6172;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62731507 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2947;AVGPOST=0.9978;RSQ=0.9961;ERATE=0.0005;THETA=0.0006;AC=645;AN=2184 GT:DS:GL:BD 0.29532966 0 1 62731650 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.8174;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62731748 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6208;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62731792 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62731851 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0298;AVGPOST=0.9989;RSQ=0.9862;ERATE=0.0003;THETA=0.0003;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 62731932 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62731962 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62731996 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2931;AVGPOST=0.9971;RSQ=0.9956;ERATE=0.0004;THETA=0.0002;AC=641;AN=2184 GT:DS:GL:BD 0.29349816 0 1 62732032 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6915;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62732066 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0152;AVGPOST=0.9998;RSQ=0.9936;ERATE=0.0003;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62732086 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0206;AVGPOST=0.9988;RSQ=0.9791;ERATE=0.0011;THETA=0.0025;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 62732091 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.976;LDAF=0.0803;AVGPOST=0.9925;RSQ=0.9645;ERATE=0.0015;THETA=0.0003;AC=173;AN=2184 GT:DS:GL:BD 0.07921246 0 1 62732170 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.947;LDAF=0.7713;AVGPOST=0.9770;RSQ=0.9512;ERATE=0.0193;THETA=0.0002;AC=1694;AN=2184 GT:DS:GL:BD 0.77564102 1 1 62732357 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0123;AVGPOST=1.0000;RSQ=0.9982;ERATE=0.0004;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 62732409 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62732421 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3533;AVGPOST=0.9999;RSQ=0.9998;ERATE=0.0003;THETA=0.0009;AC=772;AN=2184 GT:DS:GL:BD 0.35347986 0 1 62732661 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0075;AVGPOST=0.9997;RSQ=0.9797;ERATE=0.0004;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62732764 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.6993;ERATE=0.0007;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62732767 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6434;ERATE=0.0009;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62732772 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.644;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5761;ERATE=0.0003;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62732813 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0082;AVGPOST=0.9975;RSQ=0.8931;ERATE=0.0004;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62732831 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0044;AVGPOST=0.9995;RSQ=0.9453;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62732945 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3693;AVGPOST=0.9992;RSQ=0.9985;ERATE=0.0003;THETA=0.0004;AC=808;AN=2184 GT:DS:GL:BD 0.36996338 0 1 62732985 . C CT 11327 PASS INDEL;BAVGPOST=0.938;BRSQ=0.849;LDAF=0.7128;AVGPOST=0.9169;RSQ=0.8412;ERATE=0.0113;THETA=0.0006;AC=1597;AN=2184 GT:DS:GL:BD 0.73122710 1 1 62732986 rs11441186 T TG 74662 PASS INDEL;BAVGPOST=0.994;BRSQ=0.983;LDAF=0.7968;AVGPOST=0.9914;RSQ=0.9790;ERATE=0.0007;THETA=0.0005;AC=1744;AN=2184 GT:DS:GL:BD 0.79853481 1 1 62732987 . G GT 20220 PASS INDEL;BAVGPOST=0.946;BRSQ=0.875;LDAF=0.7275;AVGPOST=0.9276;RSQ=0.8600;ERATE=0.0092;THETA=0.0003;AC=1621;AN=2184 GT:DS:GL:BD 0.74221611 1 1 62732988 . G GT 20182 PASS INDEL;BAVGPOST=0.940;BRSQ=0.861;LDAF=0.7304;AVGPOST=0.9236;RSQ=0.8476;ERATE=0.0165;THETA=0.0004;AC=1639;AN=2184 GT:DS:GL:BD 0.75045788 1 1 62733176 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8033;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62733200 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3571;AVGPOST=0.9971;RSQ=0.9950;ERATE=0.0006;THETA=0.0003;AC=780;AN=2184 GT:DS:GL:BD 0.35714287 0 1 62733245 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.690;LDAF=0.0020;AVGPOST=0.9985;RSQ=0.7196;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62733300 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0047;AVGPOST=0.9988;RSQ=0.8819;ERATE=0.0005;THETA=0.0013;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62733339 . T TG 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6083;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62733367 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6218;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62733428 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.746;LDAF=0.0043;AVGPOST=0.9949;RSQ=0.5273;ERATE=0.0010;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62733448 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.984;LDAF=0.1857;AVGPOST=0.9970;RSQ=0.9931;ERATE=0.0005;THETA=0.0002;AC=407;AN=2184 GT:DS:GL:BD 0.18635531 0 1 62733685 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9998;RSQ=0.9873;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62733751 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=0.9999;RSQ=0.9915;ERATE=0.0003;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62733753 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9652;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62733826 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1262;AVGPOST=0.9997;RSQ=0.9990;ERATE=0.0003;THETA=0.0002;AC=276;AN=2184 GT:DS:GL:BD 0.12637363 0 1 62733878 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62733918 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62733936 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62733937 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62733939 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4081;AVGPOST=0.9998;RSQ=0.9997;ERATE=0.0003;THETA=0.0002;AC=893;AN=2184 GT:DS:GL:BD 0.40888280 0 1 62733957 . AC A 301 PASS INDEL;BAVGPOST=0.998;BRSQ=0.786;LDAF=0.0049;AVGPOST=0.9965;RSQ=0.7274;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62733963 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62734046 . TCG T 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.751;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4351;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62734089 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0987;AVGPOST=1.0000;RSQ=0.9998;ERATE=0.0003;THETA=0.0021;AC=216;AN=2184 GT:DS:GL:BD 0.09890110 0 1 62734172 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62734458 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62734550 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0090;AVGPOST=0.9995;RSQ=0.9664;ERATE=0.0004;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62734560 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6426;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62734567 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0071;AVGPOST=0.9994;RSQ=0.9571;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62734577 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3559;AVGPOST=0.9979;RSQ=0.9960;ERATE=0.0006;THETA=0.0002;AC=779;AN=2184 GT:DS:GL:BD 0.35668498 0 1 62734680 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.721;LDAF=0.0023;AVGPOST=0.9964;RSQ=0.4485;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62734704 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0167;AVGPOST=0.9995;RSQ=0.9854;ERATE=0.0004;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62734749 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0072;AVGPOST=0.9992;RSQ=0.9457;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62734814 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0088;AVGPOST=0.9998;RSQ=0.9874;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62734824 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0088;AVGPOST=0.9997;RSQ=0.9828;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62734880 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0080;AVGPOST=0.9996;RSQ=0.9783;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62734916 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.956;LDAF=0.0285;AVGPOST=0.9968;RSQ=0.9568;ERATE=0.0003;THETA=0.0004;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 62734922 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7670;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62735023 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3393;AVGPOST=0.9947;RSQ=0.9914;ERATE=0.0008;THETA=0.0005;AC=745;AN=2184 GT:DS:GL:BD 0.34111720 0 1 62735154 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.972;LDAF=0.0391;AVGPOST=0.9986;RSQ=0.9866;ERATE=0.0003;THETA=0.0003;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 62735165 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9641;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62735239 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8540;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62735246 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62735335 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9179;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62735410 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62735443 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62735460 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.837;LDAF=0.0597;AVGPOST=0.9662;RSQ=0.7644;ERATE=0.0101;THETA=0.0006;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 62735460 rs61379448 TA T 109 PASS INDEL;BAVGPOST=0.999;BRSQ=0.862;LDAF=0.0065;AVGPOST=0.9955;RSQ=0.6962;ERATE=0.0007;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62735476 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0158;AVGPOST=0.9993;RSQ=0.9779;ERATE=0.0003;THETA=0.0002;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62735552 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0041;AVGPOST=1.0000;RSQ=0.9947;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62735618 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0147;AVGPOST=0.9998;RSQ=0.9929;ERATE=0.0003;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 62735622 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1162;AVGPOST=0.9998;RSQ=0.9991;ERATE=0.0003;THETA=0.0011;AC=254;AN=2184 GT:DS:GL:BD 0.11630037 0 1 62735633 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62735671 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62735674 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5506;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62735745 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0017;AVGPOST=0.9998;RSQ=0.9538;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62735788 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.727;LDAF=0.0009;AVGPOST=0.9984;RSQ=0.2898;ERATE=0.0004;THETA=0.0007;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62735844 . GATTTGGTTCTTCCAC G 8114 PASS INDEL;BAVGPOST=0.981;BRSQ=0.825;LDAF=0.0622;AVGPOST=0.9960;RSQ=0.9745;ERATE=0.0005;THETA=0.0003;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 62735858 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0044;AVGPOST=0.9985;RSQ=0.8586;ERATE=0.0004;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62735891 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0103;AVGPOST=0.9988;RSQ=0.9523;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62735898 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1249;AVGPOST=0.9979;RSQ=0.9929;ERATE=0.0003;THETA=0.0016;AC=272;AN=2184 GT:DS:GL:BD 0.12454212 0 1 62735916 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8456;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62735918 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0044;AVGPOST=0.9994;RSQ=0.9319;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62736011 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62736026 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8446;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62736062 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0019;AVGPOST=0.9985;RSQ=0.6548;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62736117 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0133;AVGPOST=0.9988;RSQ=0.9712;ERATE=0.0003;THETA=0.0042;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 62736149 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0165;AVGPOST=0.9985;RSQ=0.9612;ERATE=0.0004;THETA=0.0040;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62736196 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.981;LDAF=0.3407;AVGPOST=0.9949;RSQ=0.9915;ERATE=0.0004;THETA=0.0004;AC=746;AN=2184 GT:DS:GL:BD 0.34157509 0 1 62736214 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.986;LDAF=0.4135;AVGPOST=0.9950;RSQ=0.9921;ERATE=0.0007;THETA=0.0003;AC=905;AN=2184 GT:DS:GL:BD 0.41437730 0 1 62736221 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0074;AVGPOST=0.9995;RSQ=0.9677;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62736269 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4760;ERATE=0.0003;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62736427 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9997;RSQ=0.9823;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62736429 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9624;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62736464 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7566;ERATE=0.0003;THETA=0.0054;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62736493 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7141;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62736502 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0097;AVGPOST=0.9995;RSQ=0.9764;ERATE=0.0003;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62736506 . ATC A 333 PASS INDEL;BAVGPOST=0.999;BRSQ=0.776;LDAF=0.0030;AVGPOST=0.9983;RSQ=0.7823;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62736560 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6689;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62736588 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0084;AVGPOST=0.9997;RSQ=0.9842;ERATE=0.0004;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62736711 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9092;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62736771 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.7837;AVGPOST=0.9963;RSQ=0.9918;ERATE=0.0005;THETA=0.0002;AC=1714;AN=2184 GT:DS:GL:BD 0.78479856 1 1 62736841 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.966;LDAF=0.0918;AVGPOST=0.9950;RSQ=0.9792;ERATE=0.0005;THETA=0.0007;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 62737023 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62737125 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0704;AVGPOST=0.9993;RSQ=0.9959;ERATE=0.0003;THETA=0.0003;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 62737126 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62737151 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62737195 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62737284 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62737291 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62737372 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.3501;AVGPOST=0.9999;RSQ=0.9998;ERATE=0.0003;THETA=0.0004;AC=766;AN=2184 GT:DS:GL:BD 0.35073259 0 1 62737395 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62737431 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62737766 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1204;AVGPOST=0.9995;RSQ=0.9982;ERATE=0.0003;THETA=0.0005;AC=263;AN=2184 GT:DS:GL:BD 0.12042125 0 1 62737793 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0002;AVGPOST=0.9997;RSQ=0.1498;ERATE=0.0003;THETA=0.0007;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62738013 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3555;AVGPOST=0.9986;RSQ=0.9978;ERATE=0.0003;THETA=0.0005;AC=776;AN=2184 GT:DS:GL:BD 0.35531136 0 1 62738023 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.750;LDAF=0.0028;AVGPOST=0.9997;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62738034 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0026;AVGPOST=0.9992;RSQ=0.8706;ERATE=0.0003;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62738077 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4215;AVGPOST=0.9975;RSQ=0.9965;ERATE=0.0006;THETA=0.0003;AC=923;AN=2184 GT:DS:GL:BD 0.42261904 0 1 62738177 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0104;AVGPOST=0.9992;RSQ=0.9647;ERATE=0.0004;THETA=0.0034;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62738201 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6772;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62738204 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1197;AVGPOST=0.9995;RSQ=0.9982;ERATE=0.0003;THETA=0.0003;AC=262;AN=2184 GT:DS:GL:BD 0.11996337 0 1 62738353 . A AT 121 PASS INDEL;BAVGPOST=0.999;BRSQ=0.702;LDAF=0.0027;AVGPOST=0.9968;RSQ=0.5171;ERATE=0.0007;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62738457 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7303;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62738457 . C CT 108 PASS INDEL;BAVGPOST=0.975;BRSQ=0.482;LDAF=0.0302;AVGPOST=0.9791;RSQ=0.7495;ERATE=0.0007;THETA=0.0005;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 62738464 . TC T 2150 PASS INDEL;BAVGPOST=0.983;BRSQ=0.882;LDAF=0.0662;AVGPOST=0.9784;RSQ=0.8764;ERATE=0.0043;THETA=0.0002;AC=135;AN=2184 GT:DS:GL:BD 0.06181319 0 1 62738465 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.957;BRSQ=0.759;LDAF=0.1133;AVGPOST=0.9275;RSQ=0.7277;ERATE=0.0157;THETA=0.0003;AC=206;AN=2184 GT:DS:GL:BD 0.09432235 0 1 62738471 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.975;LDAF=0.3589;AVGPOST=0.9814;RSQ=0.9723;ERATE=0.0025;THETA=0.0004;AC=782;AN=2184 GT:DS:GL:BD 0.35805860 0 1 62738555 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.928;LDAF=0.1947;AVGPOST=0.9865;RSQ=0.9709;ERATE=0.0008;THETA=0.0002;AC=433;AN=2184 GT:DS:GL:BD 0.19826007 0 1 62738561 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0069;AVGPOST=0.9915;RSQ=0.4645;ERATE=0.0024;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62738623 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.635;LDAF=0.0046;AVGPOST=0.9942;RSQ=0.5314;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62738658 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.808;LDAF=0.0058;AVGPOST=0.9966;RSQ=0.7511;ERATE=0.0012;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62738660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.936;LDAF=0.1184;AVGPOST=0.9981;RSQ=0.9931;ERATE=0.0005;THETA=0.0005;AC=259;AN=2184 GT:DS:GL:BD 0.11858974 0 1 62738721 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8730;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62738828 . AAGG A 1692 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0082;AVGPOST=0.9991;RSQ=0.9506;ERATE=0.0004;THETA=0.0009;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62738845 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62738904 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7823;AVGPOST=0.9995;RSQ=0.9990;ERATE=0.0003;THETA=0.0004;AC=1711;AN=2184 GT:DS:GL:BD 0.78342491 1 1 62738941 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62738961 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1197;AVGPOST=0.9997;RSQ=0.9987;ERATE=0.0003;THETA=0.0004;AC=262;AN=2184 GT:DS:GL:BD 0.11996337 0 1 62738962 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62739015 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8625;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62739027 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62739198 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2253;AVGPOST=1.0000;RSQ=0.9999;ERATE=0.0003;THETA=0.0004;AC=493;AN=2184 GT:DS:GL:BD 0.22573259 0 1 62739226 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0078;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62739302 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62739326 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62739350 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62739400 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0036;AVGPOST=1.0000;RSQ=0.9940;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62739433 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62739495 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0146;AVGPOST=1.0000;RSQ=0.9986;ERATE=0.0003;THETA=0.0001;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 62739542 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62739547 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=1.0000;RSQ=0.9963;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62739562 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62739696 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62739767 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62739801 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62739838 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=0.9999;RSQ=0.0499;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62739864 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62739919 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62739949 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62740027 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62740065 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4256;AVGPOST=0.9995;RSQ=0.9993;ERATE=0.0003;THETA=0.0005;AC=931;AN=2184 GT:DS:GL:BD 0.42628205 0 1 62740068 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62740120 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62740158 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62740264 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0150;AVGPOST=0.9998;RSQ=0.9953;ERATE=0.0003;THETA=0.0074;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62740273 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62740400 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9524;ERATE=0.0003;THETA=0.0039;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62740446 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7890;AVGPOST=0.9992;RSQ=0.9981;ERATE=0.0003;THETA=0.0004;AC=1726;AN=2184 GT:DS:GL:BD 0.79029304 1 1 62740449 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7723;AVGPOST=0.9986;RSQ=0.9967;ERATE=0.0004;THETA=0.0008;AC=1689;AN=2184 GT:DS:GL:BD 0.77335167 1 1 62740606 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62740626 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0039;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62740689 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62740752 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0585;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 62740930 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7870;AVGPOST=0.9998;RSQ=0.9995;ERATE=0.0003;THETA=0.0008;AC=1721;AN=2184 GT:DS:GL:BD 0.78800368 1 1 62740953 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.701;LDAF=0.0004;AVGPOST=0.9995;RSQ=0.4885;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62741015 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0100;AVGPOST=0.9992;RSQ=0.9698;ERATE=0.0003;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62741049 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3199;AVGPOST=0.9995;RSQ=0.9990;ERATE=0.0003;THETA=0.0015;AC=700;AN=2184 GT:DS:GL:BD 0.32051283 0 1 62741060 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6496;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62741063 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0020;AVGPOST=0.9982;RSQ=0.6745;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62741114 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62741131 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62741183 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0026;AVGPOST=0.9990;RSQ=0.8396;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62741195 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62741198 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3239;AVGPOST=0.9979;RSQ=0.9967;ERATE=0.0005;THETA=0.0002;AC=707;AN=2184 GT:DS:GL:BD 0.32371795 0 1 62741213 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9236;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62741296 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0657;AVGPOST=0.9990;RSQ=0.9941;ERATE=0.0003;THETA=0.0006;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 62741309 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4301;AVGPOST=0.9974;RSQ=0.9962;ERATE=0.0005;THETA=0.0005;AC=941;AN=2184 GT:DS:GL:BD 0.43086082 0 1 62741427 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8206;ERATE=0.0005;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62741526 . GAGGGAGGAAGGA G 17317 PASS INDEL;BAVGPOST=0.957;BRSQ=0.921;LDAF=0.3448;AVGPOST=0.9332;RSQ=0.8918;ERATE=0.0090;THETA=0.0003;AC=750;AN=2184 GT:DS:GL:BD 0.34340659 0 1 62741539 . A AG 558 PASS INDEL;BAVGPOST=0.998;BRSQ=0.949;LDAF=0.0207;AVGPOST=0.9952;RSQ=0.9057;ERATE=0.0008;THETA=0.0002;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 62741561 . GAA G 928 PASS INDEL;BAVGPOST=0.948;BRSQ=0.525;LDAF=0.1004;AVGPOST=0.8876;RSQ=0.5194;ERATE=0.0211;THETA=0.0005;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 62741563 . AGGAAGG A 25037 PASS INDEL;BAVGPOST=0.968;BRSQ=0.965;LDAF=0.4222;AVGPOST=0.9488;RSQ=0.9245;ERATE=0.0049;THETA=0.0005;AC=929;AN=2184 GT:DS:GL:BD 0.42536631 0 1 62741608 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.7135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62741636 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.2214;AVGPOST=0.9972;RSQ=0.9942;ERATE=0.0005;THETA=0.0004;AC=484;AN=2184 GT:DS:GL:BD 0.22161172 0 1 62741637 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0020;AVGPOST=0.9980;RSQ=0.6486;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62741644 . TCA T 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62741727 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5714;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62741844 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.671;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5491;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62741865 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0590;AVGPOST=0.9989;RSQ=0.9916;ERATE=0.0005;THETA=0.0005;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 62741868 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.918;LDAF=0.0146;AVGPOST=0.9990;RSQ=0.9713;ERATE=0.0004;THETA=0.0009;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62741871 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0159;AVGPOST=0.9993;RSQ=0.9814;ERATE=0.0003;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62741903 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62741943 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.978;LDAF=0.0649;AVGPOST=0.9998;RSQ=0.9983;ERATE=0.0003;THETA=0.0002;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 62741949 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6652;ERATE=0.0007;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62742079 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.967;LDAF=0.0638;AVGPOST=0.9963;RSQ=0.9805;ERATE=0.0003;THETA=0.0003;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 62742095 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8908;ERATE=0.0013;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62742148 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3392;AVGPOST=0.9980;RSQ=0.9965;ERATE=0.0003;THETA=0.0002;AC=741;AN=2184 GT:DS:GL:BD 0.33928570 0 1 62742156 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3390;AVGPOST=0.9976;RSQ=0.9957;ERATE=0.0008;THETA=0.0004;AC=741;AN=2184 GT:DS:GL:BD 0.33928570 0 1 62742213 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.951;BRSQ=0.894;LDAF=0.2980;AVGPOST=0.9311;RSQ=0.8845;ERATE=0.0186;THETA=0.0010;AC=650;AN=2184 GT:DS:GL:BD 0.29761904 0 1 62742265 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.950;BRSQ=0.561;LDAF=0.0900;AVGPOST=0.9045;RSQ=0.5090;ERATE=0.0331;THETA=0.0005;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 62742299 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.839;LDAF=0.0150;AVGPOST=0.9932;RSQ=0.8095;ERATE=0.0006;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62742354 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.643;LDAF=0.0113;AVGPOST=0.9907;RSQ=0.6766;ERATE=0.0009;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62742403 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.955;LDAF=0.3304;AVGPOST=0.9857;RSQ=0.9779;ERATE=0.0016;THETA=0.0002;AC=729;AN=2184 GT:DS:GL:BD 0.33379120 0 1 62742410 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5048;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62742423 . T TG 79 PASS INDEL;BAVGPOST=0.967;BRSQ=0.614;LDAF=0.0616;AVGPOST=0.9596;RSQ=0.7509;ERATE=0.0011;THETA=0.0003;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 62742425 . G GT 5080 PASS INDEL;BAVGPOST=0.986;BRSQ=0.865;LDAF=0.0579;AVGPOST=0.9881;RSQ=0.9215;ERATE=0.0011;THETA=0.0004;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 62742454 . AT A 1073 PASS INDEL;BAVGPOST=0.872;BRSQ=0.490;LDAF=0.1386;AVGPOST=0.8874;RSQ=0.6877;ERATE=0.0111;THETA=0.0006;AC=258;AN=2184 GT:DS:GL:BD 0.11813187 0 1 62742475 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9995;RSQ=0.9725;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62742589 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6714;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62742621 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5750;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62742639 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7822;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62742717 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.590;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8538;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62742838 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9997;RSQ=0.9804;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62742865 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0170;AVGPOST=0.9998;RSQ=0.9934;ERATE=0.0003;THETA=0.0002;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 62742965 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3381;AVGPOST=0.9989;RSQ=0.9979;ERATE=0.0005;THETA=0.0003;AC=740;AN=2184 GT:DS:GL:BD 0.33882785 0 1 62742995 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0102;AVGPOST=0.9997;RSQ=0.9851;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62743146 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0650;AVGPOST=0.9995;RSQ=0.9964;ERATE=0.0003;THETA=0.0003;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 62743149 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3381;AVGPOST=0.9992;RSQ=0.9985;ERATE=0.0004;THETA=0.0001;AC=740;AN=2184 GT:DS:GL:BD 0.33882785 0 1 62743249 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0170;AVGPOST=0.9999;RSQ=0.9960;ERATE=0.0003;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 62743278 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2278;AVGPOST=0.9991;RSQ=0.9977;ERATE=0.0003;THETA=0.0002;AC=498;AN=2184 GT:DS:GL:BD 0.22802198 0 1 62743398 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3383;AVGPOST=0.9997;RSQ=0.9994;ERATE=0.0003;THETA=0.0006;AC=740;AN=2184 GT:DS:GL:BD 0.33882785 0 1 62743464 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.719;LDAF=0.0025;AVGPOST=0.9982;RSQ=0.7241;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62743585 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62743610 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0082;AVGPOST=1.0000;RSQ=0.9973;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62743656 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62743761 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7662;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62743942 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3383;AVGPOST=0.9985;RSQ=0.9978;ERATE=0.0003;THETA=0.0005;AC=739;AN=2184 GT:DS:GL:BD 0.33836997 0 1 62743985 rs10654280 T TTTTC 43169 PASS INDEL;BAVGPOST=0.994;BRSQ=0.845;LDAF=0.9760;AVGPOST=0.9904;RSQ=0.8293;ERATE=0.0014;THETA=0.0005;AC=2138;AN=2184 GT:DS:GL:BD 0.97893775 1 1 62744024 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.835;BRSQ=0.632;LDAF=0.3378;AVGPOST=0.7496;RSQ=0.5209;ERATE=0.0434;THETA=0.0006;AC=636;AN=2184 GT:DS:GL:BD 0.29120880 0 1 62744068 rs71053309 TC T 2584 PASS INDEL;BAVGPOST=0.855;BRSQ=0.695;LDAF=0.3085;AVGPOST=0.8515;RSQ=0.7528;ERATE=0.0148;THETA=0.0006;AC=684;AN=2184 GT:DS:GL:BD 0.31318682 0 1 62744312 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0089;AVGPOST=0.9915;RSQ=0.6332;ERATE=0.0010;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62744359 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0027;AVGPOST=0.9971;RSQ=0.5375;ERATE=0.0008;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62744363 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.924;LDAF=0.0419;AVGPOST=0.9949;RSQ=0.9580;ERATE=0.0004;THETA=0.0006;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 62744403 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3588;AVGPOST=0.9985;RSQ=0.9972;ERATE=0.0006;THETA=0.0003;AC=785;AN=2184 GT:DS:GL:BD 0.35943222 0 1 62744420 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62744423 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62744453 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62744455 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0024;AVGPOST=0.9975;RSQ=0.6333;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62744708 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.823;LDAF=0.0113;AVGPOST=0.9931;RSQ=0.7783;ERATE=0.0011;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62744774 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9997;RSQ=0.9811;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62744915 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.955;BRSQ=0.917;LDAF=0.3763;AVGPOST=0.9492;RSQ=0.9170;ERATE=0.0160;THETA=0.0009;AC=832;AN=2184 GT:DS:GL:BD 0.38095239 0 1 62744954 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2215;AVGPOST=0.9990;RSQ=0.9976;ERATE=0.0004;THETA=0.0002;AC=484;AN=2184 GT:DS:GL:BD 0.22161172 0 1 62745094 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62745206 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7874;AVGPOST=0.9995;RSQ=0.9986;ERATE=0.0003;THETA=0.0002;AC=1722;AN=2184 GT:DS:GL:BD 0.78846157 1 1 62745331 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0074;AVGPOST=0.9993;RSQ=0.9546;ERATE=0.0003;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62745415 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6847;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62745427 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.6814;ERATE=0.0004;THETA=0.0032;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62745466 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0045;AVGPOST=0.9993;RSQ=0.9279;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62745478 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3596;AVGPOST=0.9969;RSQ=0.9959;ERATE=0.0003;THETA=0.0005;AC=784;AN=2184 GT:DS:GL:BD 0.35897437 0 1 62745506 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4024;AVGPOST=0.9969;RSQ=0.9956;ERATE=0.0005;THETA=0.0009;AC=879;AN=2184 GT:DS:GL:BD 0.40247253 0 1 62745582 . C CA 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.731;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5838;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62745684 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5725;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62745707 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9313;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62745747 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0089;AVGPOST=0.9994;RSQ=0.9710;ERATE=0.0005;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62746053 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.528;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7406;ERATE=0.0003;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62746054 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0032;AVGPOST=0.9991;RSQ=0.8785;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62746212 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0078;AVGPOST=0.9989;RSQ=0.9394;ERATE=0.0003;THETA=0.0009;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62746418 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6464;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62746482 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8540;ERATE=0.0003;THETA=0.0038;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62746602 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9256;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62746613 . TG T 2910 PASS INDEL;BAVGPOST=0.997;BRSQ=0.963;LDAF=0.0209;AVGPOST=0.9984;RSQ=0.9732;ERATE=0.0003;THETA=0.0003;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 62746646 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4373;AVGPOST=0.9982;RSQ=0.9974;ERATE=0.0003;THETA=0.0006;AC=958;AN=2184 GT:DS:GL:BD 0.43864468 0 1 62746719 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0078;AVGPOST=0.9996;RSQ=0.9794;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62746720 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9288;ERATE=0.0003;THETA=0.0018;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62746811 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8941;ERATE=0.0005;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62746987 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=0.9999;RSQ=0.9932;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62747095 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0119;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62747315 . AAGG A 864 PASS INDEL;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7707;ERATE=0.0015;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62747347 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62747618 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.786;LDAF=0.0028;AVGPOST=0.9997;RSQ=0.9464;ERATE=0.0003;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62747711 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9144;ERATE=0.0003;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62747734 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9443;ERATE=0.0004;THETA=0.0069;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62747805 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62747823 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0020;AVGPOST=0.9985;RSQ=0.6760;ERATE=0.0005;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62747825 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0027;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62747829 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.970;LDAF=0.0108;AVGPOST=0.9994;RSQ=0.9759;ERATE=0.0003;THETA=0.0040;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 62747890 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62748005 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62748032 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.8188;ERATE=0.0003;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62748036 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0202;AVGPOST=0.9991;RSQ=0.9835;ERATE=0.0003;THETA=0.0090;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 62748080 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0005;THETA=0.0122;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62748188 . C CCAGT 329 PASS INDEL;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8293;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62748216 . C CT 99 PASS INDEL;BAVGPOST=1.000;BRSQ=0.734;LDAF=0.0032;AVGPOST=0.9977;RSQ=0.7098;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62748289 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62748452 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.846;LDAF=0.0028;AVGPOST=0.9988;RSQ=0.8443;ERATE=0.0006;THETA=0.0045;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62748586 . CAA C 177 PASS INDEL;BAVGPOST=1.000;BRSQ=0.666;LDAF=0.0014;AVGPOST=0.9976;RSQ=0.4090;ERATE=0.0003;THETA=0.0058;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62749033 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0003;THETA=0.0029;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62749132 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62749197 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.612;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5713;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62749375 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.6768;ERATE=0.0003;THETA=0.0059;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62749500 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.2865;AVGPOST=0.9984;RSQ=0.9968;ERATE=0.0005;THETA=0.0002;AC=626;AN=2184 GT:DS:GL:BD 0.28663003 0 1 62749520 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9382;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62749701 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8190;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62749740 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5945;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62749759 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0052;AVGPOST=0.9983;RSQ=0.8696;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62749794 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0758;AVGPOST=0.9983;RSQ=0.9912;ERATE=0.0005;THETA=0.0002;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 62749872 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.2726;AVGPOST=0.9981;RSQ=0.9967;ERATE=0.0003;THETA=0.0006;AC=595;AN=2184 GT:DS:GL:BD 0.27243590 0 1 62749893 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7102;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62750051 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.991;LDAF=0.3671;AVGPOST=0.9906;RSQ=0.9866;ERATE=0.0010;THETA=0.0006;AC=800;AN=2184 GT:DS:GL:BD 0.36630037 0 1 62750054 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.914;LDAF=0.0151;AVGPOST=0.9995;RSQ=0.9838;ERATE=0.0003;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62750081 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.932;LDAF=0.0213;AVGPOST=0.9954;RSQ=0.9162;ERATE=0.0008;THETA=0.0012;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 62750132 . T TCG 116 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0034;AVGPOST=0.9988;RSQ=0.8388;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62750164 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.977;LDAF=0.4194;AVGPOST=0.9913;RSQ=0.9867;ERATE=0.0007;THETA=0.0004;AC=919;AN=2184 GT:DS:GL:BD 0.42078754 0 1 62750256 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.739;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.5979;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62750279 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62750365 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.951;LDAF=0.0209;AVGPOST=0.9980;RSQ=0.9568;ERATE=0.0003;THETA=0.0004;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 62750380 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0052;AVGPOST=0.9992;RSQ=0.9411;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62750399 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3026;AVGPOST=0.9991;RSQ=0.9981;ERATE=0.0005;THETA=0.0005;AC=662;AN=2184 GT:DS:GL:BD 0.30311355 0 1 62750454 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7036;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62750478 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6088;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62750510 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0606;AVGPOST=0.9993;RSQ=0.9961;ERATE=0.0003;THETA=0.0005;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 62750512 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62750635 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5171;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62750760 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0146;AVGPOST=0.9981;RSQ=0.9446;ERATE=0.0003;THETA=0.0009;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62750773 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0023;AVGPOST=0.9987;RSQ=0.7823;ERATE=0.0007;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62750786 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0603;AVGPOST=0.9996;RSQ=0.9970;ERATE=0.0003;THETA=0.0003;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 62750791 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8344;ERATE=0.0006;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62750835 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.6246;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62750910 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0084;AVGPOST=0.9996;RSQ=0.9768;ERATE=0.0005;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62750955 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62751076 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0156;AVGPOST=0.9990;RSQ=0.9798;ERATE=0.0003;THETA=0.0015;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62751518 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0087;AVGPOST=0.9998;RSQ=0.9898;ERATE=0.0003;THETA=0.0012;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62751724 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0025;AVGPOST=0.9994;RSQ=0.9099;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62751751 rs11348495 AT A 12758 PASS INDEL;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0758;AVGPOST=0.9991;RSQ=0.9947;ERATE=0.0006;THETA=0.0003;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 62751836 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62751985 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.8044;AVGPOST=0.9987;RSQ=0.9965;ERATE=0.0004;THETA=0.0006;AC=1760;AN=2184 GT:DS:GL:BD 0.80586082 1 1 62752023 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8048;AVGPOST=0.9960;RSQ=0.9907;ERATE=0.0005;THETA=0.0016;AC=1760;AN=2184 GT:DS:GL:BD 0.80586082 1 1 62752025 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6904;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62752072 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4347;AVGPOST=0.9992;RSQ=0.9986;ERATE=0.0003;THETA=0.0002;AC=950;AN=2184 GT:DS:GL:BD 0.43498167 0 1 62752116 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0087;AVGPOST=0.9999;RSQ=0.9926;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62752120 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7255;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62752148 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62752350 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.989;LDAF=0.2161;AVGPOST=0.9960;RSQ=0.9911;ERATE=0.0005;THETA=0.0002;AC=471;AN=2184 GT:DS:GL:BD 0.21565934 0 1 62752432 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.729;LDAF=0.0062;AVGPOST=0.9973;RSQ=0.8344;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62752439 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0018;AVGPOST=0.9976;RSQ=0.4681;ERATE=0.0007;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62752440 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2844;AVGPOST=0.9968;RSQ=0.9939;ERATE=0.0008;THETA=0.0003;AC=619;AN=2184 GT:DS:GL:BD 0.28342491 0 1 62752542 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4519;AVGPOST=0.9988;RSQ=0.9982;ERATE=0.0005;THETA=0.0005;AC=987;AN=2184 GT:DS:GL:BD 0.45192307 0 1 62752580 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9169;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62752623 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0036;AVGPOST=0.9991;RSQ=0.8909;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62752651 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62752660 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.631;LDAF=0.0245;AVGPOST=0.9736;RSQ=0.5768;ERATE=0.0091;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62752756 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5324;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62752937 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0083;AVGPOST=0.9989;RSQ=0.9352;ERATE=0.0005;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62753063 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2921;AVGPOST=0.9997;RSQ=0.9994;ERATE=0.0003;THETA=0.0004;AC=639;AN=2184 GT:DS:GL:BD 0.29258242 0 1 62753383 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2920;AVGPOST=0.9995;RSQ=0.9988;ERATE=0.0003;THETA=0.0003;AC=639;AN=2184 GT:DS:GL:BD 0.29258242 0 1 62753522 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0037;AVGPOST=0.9991;RSQ=0.8961;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62753688 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0613;AVGPOST=0.9995;RSQ=0.9967;ERATE=0.0004;THETA=0.0003;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 62753744 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6674;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62753763 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62753788 . T TC 2077 PASS INDEL;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0093;AVGPOST=0.9988;RSQ=0.9393;ERATE=0.0007;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62753799 rs35126231 C CA 13036 PASS INDEL;BAVGPOST=0.987;BRSQ=0.964;LDAF=0.1808;AVGPOST=0.9910;RSQ=0.9795;ERATE=0.0003;THETA=0.0002;AC=397;AN=2184 GT:DS:GL:BD 0.18177655 0 1 62753801 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.973;LDAF=0.1804;AVGPOST=0.9906;RSQ=0.9788;ERATE=0.0003;THETA=0.0004;AC=397;AN=2184 GT:DS:GL:BD 0.18177655 0 1 62753802 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.973;LDAF=0.1809;AVGPOST=0.9908;RSQ=0.9798;ERATE=0.0003;THETA=0.0003;AC=397;AN=2184 GT:DS:GL:BD 0.18177655 0 1 62753848 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62753852 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0088;AVGPOST=0.9997;RSQ=0.9827;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62753963 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62753975 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0086;AVGPOST=0.9998;RSQ=0.9900;ERATE=0.0003;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62754049 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8052;AVGPOST=0.9988;RSQ=0.9968;ERATE=0.0004;THETA=0.0007;AC=1761;AN=2184 GT:DS:GL:BD 0.80631870 1 1 62754145 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0062;AVGPOST=0.9994;RSQ=0.9549;ERATE=0.0003;THETA=0.0030;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62754232 rs35308763 AG A 32521 PASS INDEL;BAVGPOST=0.983;BRSQ=0.962;LDAF=0.2703;AVGPOST=0.9853;RSQ=0.9734;ERATE=0.0029;THETA=0.0016;AC=590;AN=2184 GT:DS:GL:BD 0.27014652 0 1 62754361 rs112686098 GGAGA G 52904 PASS INDEL;BAVGPOST=0.984;BRSQ=0.974;LDAF=0.4382;AVGPOST=0.9732;RSQ=0.9610;ERATE=0.0089;THETA=0.0017;AC=965;AN=2184 GT:DS:GL:BD 0.44184983 0 1 62754384 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0019;AVGPOST=0.9985;RSQ=0.7000;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62754385 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62754429 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5335;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62754640 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0087;AVGPOST=0.9997;RSQ=0.9830;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62754792 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.7022;AVGPOST=0.9984;RSQ=0.9968;ERATE=0.0004;THETA=0.0004;AC=1533;AN=2184 GT:DS:GL:BD 0.70192307 1 1 62754914 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0091;AVGPOST=0.9976;RSQ=0.8928;ERATE=0.0003;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62754996 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5257;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62755042 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5993;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62755111 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0096;AVGPOST=0.9982;RSQ=0.9217;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62755133 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8346;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62755338 rs72435783 ATTTCT A 30350 PASS INDEL;BAVGPOST=0.985;BRSQ=0.938;LDAF=0.1174;AVGPOST=0.9880;RSQ=0.9621;ERATE=0.0003;THETA=0.0004;AC=251;AN=2184 GT:DS:GL:BD 0.11492674 0 1 62755469 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62755482 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2991;AVGPOST=0.9988;RSQ=0.9976;ERATE=0.0003;THETA=0.0003;AC=651;AN=2184 GT:DS:GL:BD 0.29807693 0 1 62755513 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8004;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62755526 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.637;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6983;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62755635 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0117;AVGPOST=0.9985;RSQ=0.9498;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62755667 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0202;AVGPOST=0.9987;RSQ=0.9757;ERATE=0.0003;THETA=0.0005;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 62755727 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.1819;AVGPOST=0.9982;RSQ=0.9951;ERATE=0.0003;THETA=0.0004;AC=394;AN=2184 GT:DS:GL:BD 0.18040293 0 1 62755784 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5301;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62755800 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0600;AVGPOST=0.9977;RSQ=0.9861;ERATE=0.0003;THETA=0.0005;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 62756102 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0340;AVGPOST=0.9987;RSQ=0.9834;ERATE=0.0005;THETA=0.0004;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 62756158 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0017;AVGPOST=0.9981;RSQ=0.6000;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62756204 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0631;AVGPOST=0.9992;RSQ=0.9945;ERATE=0.0003;THETA=0.0003;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 62756224 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62756284 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8101;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62756295 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62756380 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0335;AVGPOST=0.9997;RSQ=0.9956;ERATE=0.0003;THETA=0.0002;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 62756443 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.895;LDAF=0.0338;AVGPOST=0.9916;RSQ=0.9024;ERATE=0.0012;THETA=0.0003;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 62756583 rs60018536 A AT 876 PASS INDEL;BAVGPOST=0.981;BRSQ=0.723;LDAF=0.0485;AVGPOST=0.9625;RSQ=0.6923;ERATE=0.0067;THETA=0.0004;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 62756625 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.973;LDAF=0.2902;AVGPOST=0.9869;RSQ=0.9774;ERATE=0.0039;THETA=0.0002;AC=634;AN=2184 GT:DS:GL:BD 0.29029304 0 1 62756640 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5490;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62756643 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0029;AVGPOST=0.9979;RSQ=0.7220;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62756644 . GAT G 1108 PASS INDEL;BAVGPOST=0.997;BRSQ=0.816;LDAF=0.0090;AVGPOST=0.9960;RSQ=0.8241;ERATE=0.0004;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62756664 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5431;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62756713 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0336;AVGPOST=0.9991;RSQ=0.9889;ERATE=0.0004;THETA=0.0002;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 62756725 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0339;AVGPOST=0.9993;RSQ=0.9908;ERATE=0.0004;THETA=0.0008;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 62756804 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0056;AVGPOST=0.9983;RSQ=0.8809;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62756897 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9149;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62756983 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.965;LDAF=0.0361;AVGPOST=0.9957;RSQ=0.9541;ERATE=0.0004;THETA=0.0007;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 62757071 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62757144 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.841;LDAF=0.0078;AVGPOST=0.9970;RSQ=0.8539;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62757187 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.756;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.7842;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62757574 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.717;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7701;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62757670 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2994;AVGPOST=0.9993;RSQ=0.9986;ERATE=0.0004;THETA=0.0002;AC=652;AN=2184 GT:DS:GL:BD 0.29853481 0 1 62757688 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6746;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62757781 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0339;AVGPOST=0.9998;RSQ=0.9975;ERATE=0.0003;THETA=0.0007;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 62757965 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7028;AVGPOST=0.9995;RSQ=0.9989;ERATE=0.0003;THETA=0.0002;AC=1534;AN=2184 GT:DS:GL:BD 0.70238096 1 1 62758006 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62758183 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4035;AVGPOST=0.9994;RSQ=0.9989;ERATE=0.0004;THETA=0.0005;AC=882;AN=2184 GT:DS:GL:BD 0.40384614 0 1 62758192 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0069;AVGPOST=0.9992;RSQ=0.9483;ERATE=0.0007;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62758253 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7875;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62758309 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0049;AVGPOST=0.9994;RSQ=0.9448;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62758332 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.7025;AVGPOST=0.9981;RSQ=0.9965;ERATE=0.0004;THETA=0.0022;AC=1532;AN=2184 GT:DS:GL:BD 0.70146519 1 1 62758378 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0039;AVGPOST=0.9985;RSQ=0.8752;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62758426 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6034;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62758428 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8495;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62758459 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7234;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62758528 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8409;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62758549 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6868;AVGPOST=0.9994;RSQ=0.9988;ERATE=0.0004;THETA=0.0003;AC=1499;AN=2184 GT:DS:GL:BD 0.68635529 1 1 62758555 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7631;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62758575 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62758599 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.756;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5992;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62758621 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0345;AVGPOST=0.9985;RSQ=0.9847;ERATE=0.0003;THETA=0.0002;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 62758671 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.743;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62758721 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7194;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62758828 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0151;AVGPOST=0.9951;RSQ=0.8573;ERATE=0.0008;THETA=0.0002;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62758926 rs5774595 AT A 15687 PASS INDEL;BAVGPOST=0.913;BRSQ=0.826;LDAF=0.6171;AVGPOST=0.8340;RSQ=0.7246;ERATE=0.0449;THETA=0.0002;AC=1418;AN=2184 GT:DS:GL:BD 0.64926738 1 1 62759038 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2831;AVGPOST=0.9963;RSQ=0.9927;ERATE=0.0011;THETA=0.0003;AC=616;AN=2184 GT:DS:GL:BD 0.28205130 0 1 62759076 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.7914;AVGPOST=0.9979;RSQ=0.9954;ERATE=0.0004;THETA=0.0003;AC=1728;AN=2184 GT:DS:GL:BD 0.79120880 1 1 62759147 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0031;AVGPOST=0.9988;RSQ=0.8410;ERATE=0.0007;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62759238 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6819;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62759369 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2487;AVGPOST=0.9990;RSQ=0.9977;ERATE=0.0004;THETA=0.0003;AC=541;AN=2184 GT:DS:GL:BD 0.24771062 0 1 62759402 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0651;AVGPOST=0.9986;RSQ=0.9907;ERATE=0.0004;THETA=0.0001;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 62759707 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.961;LDAF=0.0769;AVGPOST=0.9924;RSQ=0.9646;ERATE=0.0004;THETA=0.0004;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 62759729 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2398;AVGPOST=0.9963;RSQ=0.9921;ERATE=0.0010;THETA=0.0006;AC=521;AN=2184 GT:DS:GL:BD 0.23855311 0 1 62759843 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0158;AVGPOST=0.9994;RSQ=0.9856;ERATE=0.0003;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62759848 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2485;AVGPOST=0.9990;RSQ=0.9976;ERATE=0.0006;THETA=0.0002;AC=541;AN=2184 GT:DS:GL:BD 0.24771062 0 1 62759959 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.6839;AVGPOST=0.9964;RSQ=0.9939;ERATE=0.0009;THETA=0.0005;AC=1494;AN=2184 GT:DS:GL:BD 0.68406594 1 1 62759964 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62760019 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0040;AVGPOST=0.9984;RSQ=0.8614;ERATE=0.0003;THETA=0.0016;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62760110 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0341;AVGPOST=0.9994;RSQ=0.9920;ERATE=0.0004;THETA=0.0002;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 62760289 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62760297 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9604;ERATE=0.0006;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62760312 . G GA 28549 PASS INDEL;BAVGPOST=0.991;BRSQ=0.986;LDAF=0.6790;AVGPOST=0.9977;RSQ=0.9958;ERATE=0.0005;THETA=0.0003;AC=1482;AN=2184 GT:DS:GL:BD 0.67857140 1 1 62760313 rs5774596 A AC 77340 PASS INDEL;BAVGPOST=0.990;BRSQ=0.987;LDAF=0.6787;AVGPOST=0.9979;RSQ=0.9961;ERATE=0.0005;THETA=0.0005;AC=1481;AN=2184 GT:DS:GL:BD 0.67811358 1 1 62760352 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6450;AVGPOST=0.9985;RSQ=0.9971;ERATE=0.0006;THETA=0.0005;AC=1407;AN=2184 GT:DS:GL:BD 0.64423078 1 1 62760384 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.941;LDAF=0.0066;AVGPOST=0.9991;RSQ=0.9420;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62760400 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4045;AVGPOST=0.9991;RSQ=0.9985;ERATE=0.0004;THETA=0.0003;AC=884;AN=2184 GT:DS:GL:BD 0.40476191 0 1 62760412 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4045;AVGPOST=0.9988;RSQ=0.9978;ERATE=0.0004;THETA=0.0016;AC=884;AN=2184 GT:DS:GL:BD 0.40476191 0 1 62760589 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62760625 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2501;AVGPOST=0.9991;RSQ=0.9978;ERATE=0.0005;THETA=0.0004;AC=544;AN=2184 GT:DS:GL:BD 0.24908425 0 1 62760802 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.7840;AVGPOST=0.9979;RSQ=0.9958;ERATE=0.0004;THETA=0.0003;AC=1711;AN=2184 GT:DS:GL:BD 0.78342491 1 1 62760803 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.969;LDAF=0.0333;AVGPOST=0.9955;RSQ=0.9485;ERATE=0.0003;THETA=0.0002;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 62760843 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.632;LDAF=0.0033;AVGPOST=0.9954;RSQ=0.5048;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62760860 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.983;LDAF=0.0353;AVGPOST=0.9967;RSQ=0.9680;ERATE=0.0005;THETA=0.0024;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 62760929 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.414;LDAF=0.0107;AVGPOST=0.9853;RSQ=0.4667;ERATE=0.0018;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62760960 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.978;LDAF=0.5339;AVGPOST=0.9947;RSQ=0.9914;ERATE=0.0013;THETA=0.0003;AC=1170;AN=2184 GT:DS:GL:BD 0.53571427 1 1 62760965 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.979;LDAF=0.5324;AVGPOST=0.9954;RSQ=0.9927;ERATE=0.0009;THETA=0.0004;AC=1166;AN=2184 GT:DS:GL:BD 0.53388280 1 1 62761008 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0053;AVGPOST=0.9982;RSQ=0.8753;ERATE=0.0005;THETA=0.0026;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62761126 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1899;AVGPOST=0.9984;RSQ=0.9951;ERATE=0.0005;THETA=0.0003;AC=412;AN=2184 GT:DS:GL:BD 0.18864469 0 1 62761205 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0051;AVGPOST=0.9987;RSQ=0.9151;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62761237 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0080;AVGPOST=0.9988;RSQ=0.9396;ERATE=0.0003;THETA=0.0015;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62761274 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7841;AVGPOST=0.9990;RSQ=0.9975;ERATE=0.0004;THETA=0.0002;AC=1712;AN=2184 GT:DS:GL:BD 0.78388280 1 1 62761291 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6350;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62761379 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5015;AVGPOST=0.9988;RSQ=0.9980;ERATE=0.0006;THETA=0.0003;AC=1096;AN=2184 GT:DS:GL:BD 0.50183153 1 1 62761397 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7839;AVGPOST=0.9979;RSQ=0.9951;ERATE=0.0008;THETA=0.0003;AC=1712;AN=2184 GT:DS:GL:BD 0.78388280 1 1 62761400 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0026;AVGPOST=0.9981;RSQ=0.7749;ERATE=0.0003;THETA=0.0020;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62761424 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.8054;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62761478 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5014;AVGPOST=0.9978;RSQ=0.9967;ERATE=0.0006;THETA=0.0003;AC=1096;AN=2184 GT:DS:GL:BD 0.50183153 1 1 62761545 . TTTGC T 137 PASS INDEL;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0028;AVGPOST=0.9978;RSQ=0.7074;ERATE=0.0005;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62761557 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.4334;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62761622 rs67814724 ACT A 74325 PASS INDEL;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.7841;AVGPOST=0.9973;RSQ=0.9941;ERATE=0.0007;THETA=0.0003;AC=1712;AN=2184 GT:DS:GL:BD 0.78388280 1 1 62761636 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5619;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62761647 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.7848;AVGPOST=0.9978;RSQ=0.9952;ERATE=0.0006;THETA=0.0004;AC=1712;AN=2184 GT:DS:GL:BD 0.78388280 1 1 62761673 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2486;AVGPOST=0.9991;RSQ=0.9978;ERATE=0.0003;THETA=0.0005;AC=541;AN=2184 GT:DS:GL:BD 0.24771062 0 1 62761764 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7702;AVGPOST=0.9984;RSQ=0.9963;ERATE=0.0006;THETA=0.0006;AC=1681;AN=2184 GT:DS:GL:BD 0.76968867 1 1 62761803 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0053;AVGPOST=0.9990;RSQ=0.9205;ERATE=0.0003;THETA=0.0024;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62761852 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.7427;AVGPOST=0.9983;RSQ=0.9964;ERATE=0.0006;THETA=0.0005;AC=1621;AN=2184 GT:DS:GL:BD 0.74221611 1 1 62761907 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.978;LDAF=0.0420;AVGPOST=0.9966;RSQ=0.9667;ERATE=0.0003;THETA=0.0004;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 62761912 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.989;LDAF=0.7691;AVGPOST=0.9912;RSQ=0.9836;ERATE=0.0010;THETA=0.0003;AC=1684;AN=2184 GT:DS:GL:BD 0.77106225 1 1 62762041 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7526;ERATE=0.0005;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62762139 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0069;AVGPOST=0.9983;RSQ=0.9031;ERATE=0.0004;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62762183 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7959;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62762188 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7848;AVGPOST=0.9984;RSQ=0.9964;ERATE=0.0005;THETA=0.0001;AC=1714;AN=2184 GT:DS:GL:BD 0.78479856 1 1 62762221 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0126;AVGPOST=0.9986;RSQ=0.9533;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62762251 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0035;AVGPOST=0.9991;RSQ=0.8858;ERATE=0.0005;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62762255 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7843;AVGPOST=0.9978;RSQ=0.9947;ERATE=0.0007;THETA=0.0003;AC=1714;AN=2184 GT:DS:GL:BD 0.78479856 1 1 62762267 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7847;AVGPOST=0.9982;RSQ=0.9957;ERATE=0.0006;THETA=0.0003;AC=1714;AN=2184 GT:DS:GL:BD 0.78479856 1 1 62762380 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.7840;AVGPOST=0.9965;RSQ=0.9927;ERATE=0.0007;THETA=0.0002;AC=1711;AN=2184 GT:DS:GL:BD 0.78342491 1 1 62762475 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0346;AVGPOST=0.9992;RSQ=0.9891;ERATE=0.0004;THETA=0.0010;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 62762588 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62762626 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7843;AVGPOST=0.9948;RSQ=0.9891;ERATE=0.0006;THETA=0.0003;AC=1713;AN=2184 GT:DS:GL:BD 0.78434068 1 1 62762760 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.980;LDAF=0.2439;AVGPOST=0.9795;RSQ=0.9611;ERATE=0.0007;THETA=0.0015;AC=530;AN=2184 GT:DS:GL:BD 0.24267399 0 1 62762821 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0030;AVGPOST=0.9980;RSQ=0.7052;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62762863 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.594;LDAF=0.0026;AVGPOST=0.9975;RSQ=0.5890;ERATE=0.0005;THETA=0.0023;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62762964 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0346;AVGPOST=0.9993;RSQ=0.9919;ERATE=0.0004;THETA=0.0003;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 62762979 rs71745329 CTAGA C 87655 PASS INDEL;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7853;AVGPOST=0.9963;RSQ=0.9916;ERATE=0.0006;THETA=0.0004;AC=1715;AN=2184 GT:DS:GL:BD 0.78525639 1 1 62763091 . A AT 15 PASS INDEL;BAVGPOST=0.998;BRSQ=0.785;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4363;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62763254 . AG A 208 PASS INDEL;BAVGPOST=0.998;BRSQ=0.849;LDAF=0.0053;AVGPOST=0.9960;RSQ=0.7377;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62763272 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5186;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62763336 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0025;AVGPOST=0.9990;RSQ=0.8130;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62763395 . T TA 327 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0053;AVGPOST=0.9981;RSQ=0.8423;ERATE=0.0008;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62763401 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5276;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62763514 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0029;AVGPOST=0.9990;RSQ=0.8546;ERATE=0.0006;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62763540 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.4975;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62763557 . A AC 24 PASS INDEL;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4590;ERATE=0.0004;THETA=0.0043;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62763571 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0218;AVGPOST=0.9995;RSQ=0.9893;ERATE=0.0003;THETA=0.0005;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 62763664 . TC T 18131 PASS INDEL;BAVGPOST=0.993;BRSQ=0.979;LDAF=0.1799;AVGPOST=0.9954;RSQ=0.9868;ERATE=0.0009;THETA=0.0006;AC=389;AN=2184 GT:DS:GL:BD 0.17811355 0 1 62763667 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.980;LDAF=0.1800;AVGPOST=0.9975;RSQ=0.9929;ERATE=0.0005;THETA=0.0019;AC=390;AN=2184 GT:DS:GL:BD 0.17857143 0 1 62763668 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6426;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62764131 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62764426 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0057;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62764478 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4018;AVGPOST=0.9981;RSQ=0.9969;ERATE=0.0004;THETA=0.0005;AC=878;AN=2184 GT:DS:GL:BD 0.40201464 0 1 62764519 . AGTT A 329 PASS INDEL;BAVGPOST=0.999;BRSQ=0.816;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7113;ERATE=0.0009;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62764526 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.942;LDAF=0.0264;AVGPOST=0.9962;RSQ=0.9486;ERATE=0.0003;THETA=0.0003;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 62764606 . T TTA 14588 PASS INDEL;BAVGPOST=0.992;BRSQ=0.985;LDAF=0.3929;AVGPOST=0.9938;RSQ=0.9898;ERATE=0.0006;THETA=0.0005;AC=855;AN=2184 GT:DS:GL:BD 0.39148352 0 1 62764607 rs60745398 T TA 35289 PASS INDEL;BAVGPOST=0.991;BRSQ=0.984;LDAF=0.3924;AVGPOST=0.9924;RSQ=0.9882;ERATE=0.0007;THETA=0.0008;AC=853;AN=2184 GT:DS:GL:BD 0.39056778 0 1 62764663 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2064;AVGPOST=0.9954;RSQ=0.9897;ERATE=0.0005;THETA=0.0005;AC=448;AN=2184 GT:DS:GL:BD 0.20512821 0 1 62764699 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.701;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.6445;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62764709 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.798;LDAF=0.0003;AVGPOST=0.9994;RSQ=0.1083;ERATE=0.0004;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62764769 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0097;AVGPOST=0.9998;RSQ=0.9909;ERATE=0.0003;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62764902 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.714;LDAF=0.0024;AVGPOST=0.9971;RSQ=0.5594;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62764907 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.7479;AVGPOST=0.9900;RSQ=0.9800;ERATE=0.0017;THETA=0.0025;AC=1635;AN=2184 GT:DS:GL:BD 0.74862635 1 1 62764995 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6768;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62765049 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.7994;AVGPOST=0.9978;RSQ=0.9946;ERATE=0.0007;THETA=0.0004;AC=1746;AN=2184 GT:DS:GL:BD 0.79945058 1 1 62765110 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8771;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62765153 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6838;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62765216 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0065;AVGPOST=0.9988;RSQ=0.9366;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62765368 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62765368 MERGED_DEL_2_3769 GCCTCATAAAGATGTAGCAGCTGAATTAATGAATTATTTAAATAATGGATTAATTCATATTTTGAGGGTAGCAAATGATTTGAAATTTGTAGGTAGGATGTTTTGGAGTGGGAGAGAGATGTTCACCTCTGGACTTTTCTTTTTTAAAAGAGTGAGCCGTTCAAAATAGAACAACTGGAATATTTCCCTT GGCTGGTTGGGAGAGGCTTTTTGGAATGCATGAGGTTGTTGGGCTTAGTGTCCTAAAGAGACTGGTGGGAG . . SV;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9181;ERATE=0.0004;THETA=0.0022;CIEND=-60,93;CIPOS=-92,65;END=62770755;HOMLEN=1;HOMSEQ=C;SOURCE=BreakDancer_62765381_62770730,Gen GT:DS:GL:BD 0.00366300 0 1 62765461 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.8026;AVGPOST=0.9989;RSQ=0.9976;ERATE=0.0005;THETA=0.0004;AC=1752;AN=2184 GT:DS:GL:BD 0.80219781 1 1 62765478 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0117;AVGPOST=0.9984;RSQ=0.9482;ERATE=0.0005;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62765525 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62765738 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1882;AVGPOST=0.9985;RSQ=0.9962;ERATE=0.0004;THETA=0.0003;AC=409;AN=2184 GT:DS:GL:BD 0.18727106 0 1 62765827 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0079;AVGPOST=0.9993;RSQ=0.9610;ERATE=0.0004;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62765976 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7385;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62765999 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.910;LDAF=0.0060;AVGPOST=0.9984;RSQ=0.8882;ERATE=0.0009;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62766001 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.0686;AVGPOST=0.9999;RSQ=0.9994;ERATE=0.0003;THETA=0.0003;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 62766033 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8116;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62766049 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9124;ERATE=0.0003;THETA=0.0001;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62766072 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7478;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62766094 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7181;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62766189 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8082;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62766259 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0025;AVGPOST=0.9980;RSQ=0.6678;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62766316 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.7051;AVGPOST=0.9979;RSQ=0.9960;ERATE=0.0006;THETA=0.0003;AC=1540;AN=2184 GT:DS:GL:BD 0.70512819 1 1 62766398 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7918;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62766406 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1884;AVGPOST=0.9996;RSQ=0.9988;ERATE=0.0003;THETA=0.0003;AC=409;AN=2184 GT:DS:GL:BD 0.18727106 0 1 62766430 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5861;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62766445 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.806;LDAF=0.0038;AVGPOST=0.9978;RSQ=0.7715;ERATE=0.0007;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62766449 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0028;AVGPOST=0.9987;RSQ=0.7931;ERATE=0.0005;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62766527 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4036;AVGPOST=0.9973;RSQ=0.9957;ERATE=0.0004;THETA=0.0004;AC=881;AN=2184 GT:DS:GL:BD 0.40338829 0 1 62766554 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62766589 . AT A 25 PASS INDEL;BAVGPOST=0.996;BRSQ=0.582;LDAF=0.0050;AVGPOST=0.9914;RSQ=0.3403;ERATE=0.0013;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62766601 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0980;AVGPOST=0.9986;RSQ=0.9949;ERATE=0.0004;THETA=0.0003;AC=214;AN=2184 GT:DS:GL:BD 0.09798535 0 1 62766746 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0041;AVGPOST=0.9990;RSQ=0.9009;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62766790 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.494;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.4247;ERATE=0.0003;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62766860 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0685;AVGPOST=0.9997;RSQ=0.9979;ERATE=0.0003;THETA=0.0003;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 62766887 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.844;LDAF=0.0014;AVGPOST=0.9993;RSQ=0.8237;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62766969 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1883;AVGPOST=0.9996;RSQ=0.9989;ERATE=0.0003;THETA=0.0005;AC=409;AN=2184 GT:DS:GL:BD 0.18727106 0 1 62767031 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0274;AVGPOST=0.9997;RSQ=0.9954;ERATE=0.0003;THETA=0.0003;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 62767073 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0014;AVGPOST=0.9994;RSQ=0.8193;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62767104 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0105;AVGPOST=0.9977;RSQ=0.9180;ERATE=0.0004;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 62767138 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62767190 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7951;AVGPOST=0.9994;RSQ=0.9987;ERATE=0.0003;THETA=0.0003;AC=1736;AN=2184 GT:DS:GL:BD 0.79487181 1 1 62767201 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0077;AVGPOST=0.9999;RSQ=0.9918;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62767209 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0845;AVGPOST=0.9985;RSQ=0.9918;ERATE=0.0004;THETA=0.0028;AC=184;AN=2184 GT:DS:GL:BD 0.08424909 0 1 62767256 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5118;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62767265 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2858;AVGPOST=0.9994;RSQ=0.9988;ERATE=0.0003;THETA=0.0004;AC=622;AN=2184 GT:DS:GL:BD 0.28479853 0 1 62767287 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7650;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62767328 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0031;AVGPOST=0.9957;RSQ=0.5281;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62767347 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7951;AVGPOST=0.9984;RSQ=0.9964;ERATE=0.0004;THETA=0.0002;AC=1736;AN=2184 GT:DS:GL:BD 0.79487181 1 1 62767365 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1878;AVGPOST=0.9989;RSQ=0.9972;ERATE=0.0004;THETA=0.0003;AC=407;AN=2184 GT:DS:GL:BD 0.18635531 0 1 62767422 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9993;RSQ=0.8019;ERATE=0.0004;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62767573 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0044;AVGPOST=0.9977;RSQ=0.7938;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62767622 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0133;AVGPOST=0.9996;RSQ=0.9852;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 62767742 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0608;AVGPOST=0.9999;RSQ=0.9990;ERATE=0.0003;THETA=0.0006;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 62767754 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0608;AVGPOST=0.9999;RSQ=0.9991;ERATE=0.0003;THETA=0.0002;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 62767771 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8614;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62767800 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0611;AVGPOST=0.9995;RSQ=0.9965;ERATE=0.0003;THETA=0.0004;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 62767873 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62767883 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0609;AVGPOST=0.9999;RSQ=0.9990;ERATE=0.0003;THETA=0.0004;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 62767893 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8263;ERATE=0.0009;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62767953 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6006;AVGPOST=0.9985;RSQ=0.9979;ERATE=0.0003;THETA=0.0003;AC=1314;AN=2184 GT:DS:GL:BD 0.60164833 1 1 62767968 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1947;AVGPOST=0.9994;RSQ=0.9982;ERATE=0.0004;THETA=0.0005;AC=423;AN=2184 GT:DS:GL:BD 0.19368131 0 1 62767977 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62767993 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4040;AVGPOST=0.9988;RSQ=0.9982;ERATE=0.0004;THETA=0.0002;AC=883;AN=2184 GT:DS:GL:BD 0.40430403 0 1 62768026 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.685;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.6262;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62768053 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1945;AVGPOST=0.9995;RSQ=0.9985;ERATE=0.0003;THETA=0.0004;AC=423;AN=2184 GT:DS:GL:BD 0.19368131 0 1 62768061 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0022;AVGPOST=0.9987;RSQ=0.7771;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62768070 . TA T 258 PASS INDEL;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4866;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62768093 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4035;AVGPOST=0.9979;RSQ=0.9970;ERATE=0.0005;THETA=0.0004;AC=883;AN=2184 GT:DS:GL:BD 0.40430403 0 1 62768148 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8005;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62768200 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0070;AVGPOST=0.9993;RSQ=0.9629;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62768246 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0468;AVGPOST=0.9991;RSQ=0.9921;ERATE=0.0003;THETA=0.0004;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 62768253 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62768288 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62768389 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.7011;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62768455 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1879;AVGPOST=0.9984;RSQ=0.9957;ERATE=0.0003;THETA=0.0010;AC=407;AN=2184 GT:DS:GL:BD 0.18635531 0 1 62768459 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0313;AVGPOST=0.9982;RSQ=0.9806;ERATE=0.0003;THETA=0.0004;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 62768467 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0070;AVGPOST=0.9993;RSQ=0.9602;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62768474 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62768632 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0144;AVGPOST=0.9995;RSQ=0.9863;ERATE=0.0004;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62768690 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9910;ERATE=0.0004;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62768721 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0608;AVGPOST=1.0000;RSQ=0.9997;ERATE=0.0003;THETA=0.0006;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 62768744 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0608;AVGPOST=0.9999;RSQ=0.9993;ERATE=0.0003;THETA=0.0004;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 62768779 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62768903 rs61264462 T TC 12597 PASS INDEL;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0614;AVGPOST=0.9984;RSQ=0.9913;ERATE=0.0003;THETA=0.0002;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 62768961 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6529;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62769098 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8472;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62769144 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.1067;AVGPOST=0.9984;RSQ=0.9940;ERATE=0.0004;THETA=0.0010;AC=232;AN=2184 GT:DS:GL:BD 0.10622711 0 1 62769155 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.5713;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62769190 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6812;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62769240 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0610;AVGPOST=0.9993;RSQ=0.9957;ERATE=0.0003;THETA=0.0002;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 62769268 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.780;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5089;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62769396 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.5950;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62769471 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0032;AVGPOST=0.9964;RSQ=0.5247;ERATE=0.0004;THETA=0.0026;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62769505 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.5653;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62769554 . C CT 62 PASS INDEL;BAVGPOST=0.989;BRSQ=0.568;LDAF=0.0208;AVGPOST=0.9721;RSQ=0.4325;ERATE=0.0077;THETA=0.0010;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62769649 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0051;AVGPOST=0.9958;RSQ=0.6756;ERATE=0.0004;THETA=0.0026;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62769708 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.585;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5018;ERATE=0.0004;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62769805 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.713;LDAF=0.0064;AVGPOST=0.9926;RSQ=0.5878;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62769887 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0604;AVGPOST=0.9991;RSQ=0.9942;ERATE=0.0004;THETA=0.0003;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 62769931 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.7901;AVGPOST=0.9965;RSQ=0.9927;ERATE=0.0004;THETA=0.0037;AC=1723;AN=2184 GT:DS:GL:BD 0.78891939 1 1 62770113 rs35985239 C CA 16658 PASS INDEL;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1832;AVGPOST=0.9965;RSQ=0.9905;ERATE=0.0005;THETA=0.0043;AC=398;AN=2184 GT:DS:GL:BD 0.18223444 0 1 62770118 . A AC 276 PASS INDEL;BAVGPOST=0.926;BRSQ=0.718;LDAF=0.1230;AVGPOST=0.9474;RSQ=0.8351;ERATE=0.0006;THETA=0.0011;AC=277;AN=2184 GT:DS:GL:BD 0.12683150 0 1 62770212 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0061;AVGPOST=0.9995;RSQ=0.9664;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62770225 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62770308 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62770334 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0280;AVGPOST=0.9996;RSQ=0.9945;ERATE=0.0003;THETA=0.0002;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 62770380 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0069;AVGPOST=0.9984;RSQ=0.9081;ERATE=0.0005;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62770381 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.716;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62770399 rs66789513 T TC 82461 PASS INDEL;BAVGPOST=1.000;BRSQ=0;LDAF=0.9994;AVGPOST=0.9988;RSQ=0.2645;ERATE=0.0004;THETA=0.0003;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 62770453 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62770459 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0145;AVGPOST=0.9993;RSQ=0.9781;ERATE=0.0003;THETA=0.0070;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62770624 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0061;AVGPOST=0.9996;RSQ=0.9736;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62770629 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62770716 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5535;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62770858 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=0.9994;RSQ=0.9677;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62770963 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0628;AVGPOST=0.9986;RSQ=0.9927;ERATE=0.0003;THETA=0.0007;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 62770965 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.4459;AVGPOST=0.9952;RSQ=0.9929;ERATE=0.0012;THETA=0.0004;AC=976;AN=2184 GT:DS:GL:BD 0.44688645 0 1 62771010 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.800;LDAF=0.0043;AVGPOST=0.9965;RSQ=0.6713;ERATE=0.0010;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62771011 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0284;AVGPOST=0.9977;RSQ=0.9696;ERATE=0.0004;THETA=0.0004;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 62771012 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0019;AVGPOST=0.9983;RSQ=0.6475;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62771019 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.4662;AVGPOST=0.9841;RSQ=0.9762;ERATE=0.0039;THETA=0.0004;AC=1027;AN=2184 GT:DS:GL:BD 0.47023809 0 1 62771040 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.958;LDAF=0.0145;AVGPOST=0.9979;RSQ=0.9324;ERATE=0.0005;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62771062 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0041;AVGPOST=0.9936;RSQ=0.3469;ERATE=0.0014;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62771065 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.971;LDAF=0.1301;AVGPOST=0.9875;RSQ=0.9602;ERATE=0.0007;THETA=0.0040;AC=284;AN=2184 GT:DS:GL:BD 0.13003664 0 1 62771088 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.0630;AVGPOST=0.9972;RSQ=0.9838;ERATE=0.0003;THETA=0.0023;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 62771124 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0019;AVGPOST=0.9970;RSQ=0.3315;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62771185 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.973;LDAF=0.4388;AVGPOST=0.9773;RSQ=0.9656;ERATE=0.0044;THETA=0.0004;AC=970;AN=2184 GT:DS:GL:BD 0.44413918 0 1 62771249 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.968;LDAF=0.4368;AVGPOST=0.9699;RSQ=0.9566;ERATE=0.0040;THETA=0.0003;AC=960;AN=2184 GT:DS:GL:BD 0.43956044 0 1 62771264 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.718;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.5995;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62771274 . GCCTGCC G 260 PASS INDEL;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4734;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62771279 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4450;AVGPOST=0.9963;RSQ=0.9947;ERATE=0.0007;THETA=0.0002;AC=972;AN=2184 GT:DS:GL:BD 0.44505495 0 1 62771303 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4731;AVGPOST=0.9987;RSQ=0.9978;ERATE=0.0004;THETA=0.0006;AC=1035;AN=2184 GT:DS:GL:BD 0.47390109 0 1 62771317 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5935;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62771390 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0026;AVGPOST=0.9974;RSQ=0.5931;ERATE=0.0009;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62771399 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0037;AVGPOST=0.9991;RSQ=0.8999;ERATE=0.0009;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62771408 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.8452;AVGPOST=0.9983;RSQ=0.9949;ERATE=0.0003;THETA=0.0008;AC=1845;AN=2184 GT:DS:GL:BD 0.84478021 1 1 62771437 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9994;RSQ=0.5104;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62771458 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.4748;AVGPOST=0.9989;RSQ=0.9982;ERATE=0.0004;THETA=0.0003;AC=1038;AN=2184 GT:DS:GL:BD 0.47527471 0 1 62771468 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62771477 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.7117;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62771759 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9990;RSQ=0.9051;ERATE=0.0003;THETA=0.0034;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62771873 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.707;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4670;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62771892 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6941;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62772101 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.980;LDAF=0.2402;AVGPOST=0.9854;RSQ=0.9729;ERATE=0.0007;THETA=0.0002;AC=522;AN=2184 GT:DS:GL:BD 0.23901099 0 1 62772197 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.698;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6273;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62772200 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.1760;AVGPOST=0.9985;RSQ=0.9955;ERATE=0.0005;THETA=0.0002;AC=382;AN=2184 GT:DS:GL:BD 0.17490843 0 1 62772203 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7905;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62772242 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.8238;AVGPOST=0.9971;RSQ=0.9914;ERATE=0.0005;THETA=0.0004;AC=1800;AN=2184 GT:DS:GL:BD 0.82417583 1 1 62772284 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4589;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62772290 . CT C 46 PASS INDEL;BAVGPOST=0.999;BRSQ=0.630;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5420;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62772328 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0077;AVGPOST=0.9926;RSQ=0.6202;ERATE=0.0022;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62772444 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0022;AVGPOST=0.9980;RSQ=0.6484;ERATE=0.0007;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62772511 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.6898;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62772538 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0630;AVGPOST=0.9991;RSQ=0.9949;ERATE=0.0004;THETA=0.0004;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 62772581 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.4702;AVGPOST=0.9969;RSQ=0.9953;ERATE=0.0006;THETA=0.0003;AC=1027;AN=2184 GT:DS:GL:BD 0.47023809 0 1 62772626 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.753;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5491;ERATE=0.0004;THETA=0.0042;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62772782 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.8515;AVGPOST=0.9984;RSQ=0.9952;ERATE=0.0003;THETA=0.0009;AC=1859;AN=2184 GT:DS:GL:BD 0.85119045 1 1 62772825 . TG T 7493 PASS INDEL;BAVGPOST=0.996;BRSQ=0.975;LDAF=0.0612;AVGPOST=0.9969;RSQ=0.9807;ERATE=0.0007;THETA=0.0002;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 62772839 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62772882 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0166;AVGPOST=0.9989;RSQ=0.9729;ERATE=0.0003;THETA=0.0009;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62772927 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.889;LDAF=0.0066;AVGPOST=0.9939;RSQ=0.6547;ERATE=0.0007;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62772929 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0046;AVGPOST=0.9952;RSQ=0.6101;ERATE=0.0007;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62772982 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0158;AVGPOST=0.9992;RSQ=0.9798;ERATE=0.0003;THETA=0.0002;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62772985 . C CT 28 PASS INDEL;BAVGPOST=0.998;BRSQ=0.820;LDAF=0.0076;AVGPOST=0.9924;RSQ=0.6051;ERATE=0.0020;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62773010 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.738;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.4912;ERATE=0.0005;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62773014 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0613;AVGPOST=0.9979;RSQ=0.9882;ERATE=0.0004;THETA=0.0003;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 62773016 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0111;AVGPOST=0.9984;RSQ=0.9425;ERATE=0.0004;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62773228 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.806;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7821;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62773268 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.1755;AVGPOST=0.9953;RSQ=0.9882;ERATE=0.0006;THETA=0.0006;AC=382;AN=2184 GT:DS:GL:BD 0.17490843 0 1 62773332 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0612;AVGPOST=0.9974;RSQ=0.9840;ERATE=0.0005;THETA=0.0003;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 62773426 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1756;AVGPOST=0.9989;RSQ=0.9968;ERATE=0.0005;THETA=0.0002;AC=381;AN=2184 GT:DS:GL:BD 0.17445055 0 1 62773629 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8804;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62773664 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62773703 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6467;AVGPOST=0.9971;RSQ=0.9950;ERATE=0.0004;THETA=0.0003;AC=1413;AN=2184 GT:DS:GL:BD 0.64697802 1 1 62773761 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=0.9989;RSQ=0.9220;ERATE=0.0004;THETA=0.0038;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62773907 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.989;LDAF=0.1660;AVGPOST=0.9950;RSQ=0.9874;ERATE=0.0004;THETA=0.0006;AC=358;AN=2184 GT:DS:GL:BD 0.16391942 0 1 62773996 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.818;LDAF=0.0065;AVGPOST=0.9973;RSQ=0.8239;ERATE=0.0004;THETA=0.0040;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62774011 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0102;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62774019 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0005;THETA=0.0132;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62774053 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5713;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62774179 . AT A 1115 PASS INDEL;BAVGPOST=0.997;BRSQ=0.874;LDAF=0.0160;AVGPOST=0.9901;RSQ=0.7672;ERATE=0.0004;THETA=0.0012;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62774288 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.966;LDAF=0.1003;AVGPOST=0.9917;RSQ=0.9683;ERATE=0.0006;THETA=0.0003;AC=217;AN=2184 GT:DS:GL:BD 0.09935898 0 1 62774403 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0138;AVGPOST=0.9994;RSQ=0.9805;ERATE=0.0003;THETA=0.0106;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62774469 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.983;LDAF=0.5516;AVGPOST=0.9809;RSQ=0.9728;ERATE=0.0057;THETA=0.0068;AC=1201;AN=2184 GT:DS:GL:BD 0.54990840 1 1 62774623 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.950;LDAF=0.0851;AVGPOST=0.9914;RSQ=0.9585;ERATE=0.0004;THETA=0.0009;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 62774624 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.726;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4558;ERATE=0.0008;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62774653 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0026;AVGPOST=0.9990;RSQ=0.8332;ERATE=0.0009;THETA=0.0035;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62774868 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1790;AVGPOST=0.9977;RSQ=0.9940;ERATE=0.0004;THETA=0.0056;AC=388;AN=2184 GT:DS:GL:BD 0.17765568 0 1 62774881 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0004;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62774940 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0139;AVGPOST=0.9996;RSQ=0.9873;ERATE=0.0003;THETA=0.0011;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62774972 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.987;LDAF=0.8031;AVGPOST=0.9939;RSQ=0.9856;ERATE=0.0006;THETA=0.0005;AC=1754;AN=2184 GT:DS:GL:BD 0.80311358 1 1 62775033 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7656;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62775151 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.797;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62775286 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1738;AVGPOST=0.9982;RSQ=0.9953;ERATE=0.0004;THETA=0.0017;AC=378;AN=2184 GT:DS:GL:BD 0.17307693 0 1 62775300 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0138;AVGPOST=0.9995;RSQ=0.9826;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62775308 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.740;LDAF=0.0037;AVGPOST=0.9975;RSQ=0.7407;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62775346 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62775473 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6057;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62775475 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62775540 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0022;AVGPOST=0.9986;RSQ=0.7427;ERATE=0.0010;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62775561 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4924;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62775609 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.6965;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62775654 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0071;AVGPOST=0.9996;RSQ=0.9719;ERATE=0.0004;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62775666 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0147;AVGPOST=0.9996;RSQ=0.9867;ERATE=0.0003;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 62775675 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0138;AVGPOST=0.9994;RSQ=0.9793;ERATE=0.0003;THETA=0.0046;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62775765 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.917;LDAF=0.0066;AVGPOST=0.9966;RSQ=0.7940;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62775825 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.930;LDAF=0.0154;AVGPOST=0.9982;RSQ=0.9505;ERATE=0.0005;THETA=0.0002;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 62775941 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0654;AVGPOST=0.9980;RSQ=0.9872;ERATE=0.0006;THETA=0.0015;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 62776138 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1684;AVGPOST=0.9943;RSQ=0.9851;ERATE=0.0005;THETA=0.0028;AC=367;AN=2184 GT:DS:GL:BD 0.16804029 0 1 62776296 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.1754;AVGPOST=0.9977;RSQ=0.9943;ERATE=0.0003;THETA=0.0041;AC=382;AN=2184 GT:DS:GL:BD 0.17490843 0 1 62776493 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7123;ERATE=0.0012;THETA=0.0068;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62776534 . A AC 10478 PASS INDEL;BAVGPOST=0.974;BRSQ=0.960;LDAF=0.4255;AVGPOST=0.9774;RSQ=0.9691;ERATE=0.0005;THETA=0.0002;AC=934;AN=2184 GT:DS:GL:BD 0.42765567 0 1 62776536 rs78586870 C CA 52553 PASS INDEL;BAVGPOST=0.978;BRSQ=0.967;LDAF=0.4274;AVGPOST=0.9777;RSQ=0.9701;ERATE=0.0004;THETA=0.0006;AC=936;AN=2184 GT:DS:GL:BD 0.42857143 0 1 62776537 . A AT 14298 PASS INDEL;BAVGPOST=0.973;BRSQ=0.959;LDAF=0.4234;AVGPOST=0.9750;RSQ=0.9658;ERATE=0.0009;THETA=0.0049;AC=928;AN=2184 GT:DS:GL:BD 0.42490843 0 1 62776783 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9490;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62776847 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62776922 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0029;AVGPOST=0.9978;RSQ=0.6655;ERATE=0.0011;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62777003 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0085;AVGPOST=0.9979;RSQ=0.9069;ERATE=0.0004;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62777047 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62777048 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0005;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62777065 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7473;ERATE=0.0003;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62777078 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.676;LDAF=0.0372;AVGPOST=0.9586;RSQ=0.5704;ERATE=0.0172;THETA=0.0003;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 62777122 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.797;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62777203 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8638;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62777323 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0141;AVGPOST=0.9997;RSQ=0.9915;ERATE=0.0003;THETA=0.0013;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62777337 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.7812;ERATE=0.0008;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62777444 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62777581 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0076;AVGPOST=0.9975;RSQ=0.8719;ERATE=0.0007;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62777659 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0062;AVGPOST=0.9973;RSQ=0.8290;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62777813 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0053;AVGPOST=0.9956;RSQ=0.6492;ERATE=0.0010;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62778114 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.933;LDAF=0.0085;AVGPOST=0.9982;RSQ=0.9187;ERATE=0.0005;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62778127 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7425;ERATE=0.0003;THETA=0.0055;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62778252 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62778298 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.986;LDAF=0.6559;AVGPOST=0.9904;RSQ=0.9853;ERATE=0.0009;THETA=0.0069;AC=1435;AN=2184 GT:DS:GL:BD 0.65705127 1 1 62778382 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.972;LDAF=0.1725;AVGPOST=0.9916;RSQ=0.9784;ERATE=0.0003;THETA=0.0092;AC=374;AN=2184 GT:DS:GL:BD 0.17124543 0 1 62778460 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1894;AVGPOST=0.9962;RSQ=0.9909;ERATE=0.0004;THETA=0.0152;AC=411;AN=2184 GT:DS:GL:BD 0.18818681 0 1 62778547 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.955;LDAF=0.8421;AVGPOST=0.9849;RSQ=0.9586;ERATE=0.0009;THETA=0.0057;AC=1840;AN=2184 GT:DS:GL:BD 0.84249085 1 1 62778585 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6943;ERATE=0.0003;THETA=0.0268;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62778643 rs3039733 GT G 16230 PASS INDEL;BAVGPOST=0.984;BRSQ=0.972;LDAF=0.2996;AVGPOST=0.9821;RSQ=0.9714;ERATE=0.0004;THETA=0.0012;AC=653;AN=2184 GT:DS:GL:BD 0.29899266 0 1 62778644 rs3039733 TTC T 44117 PASS INDEL;BAVGPOST=0.984;BRSQ=0.972;LDAF=0.3000;AVGPOST=0.9824;RSQ=0.9721;ERATE=0.0004;THETA=0.0176;AC=653;AN=2184 GT:DS:GL:BD 0.29899266 0 1 62778675 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1524;AVGPOST=0.9950;RSQ=0.9861;ERATE=0.0005;THETA=0.0113;AC=331;AN=2184 GT:DS:GL:BD 0.15155677 0 1 62778711 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1399;AVGPOST=0.9957;RSQ=0.9874;ERATE=0.0004;THETA=0.0036;AC=301;AN=2184 GT:DS:GL:BD 0.13782051 0 1 62778731 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0053;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62778757 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.1539;AVGPOST=0.9949;RSQ=0.9864;ERATE=0.0004;THETA=0.0320;AC=331;AN=2184 GT:DS:GL:BD 0.15155677 0 1 62779115 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8622;ERATE=0.0005;THETA=0.0148;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62779135 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.866;LDAF=0.0087;AVGPOST=0.9963;RSQ=0.8266;ERATE=0.0004;THETA=0.0397;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62779238 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0020;AVGPOST=0.9985;RSQ=0.7239;ERATE=0.0004;THETA=0.0329;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62779422 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.960;LDAF=0.0302;AVGPOST=0.9943;RSQ=0.9248;ERATE=0.0006;THETA=0.0386;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 62779494 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.851;LDAF=0.0050;AVGPOST=0.9975;RSQ=0.8251;ERATE=0.0004;THETA=0.0140;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62779543 rs77314979 A AT 13142 PASS INDEL;BAVGPOST=0.979;BRSQ=0.957;LDAF=0.2351;AVGPOST=0.9689;RSQ=0.9339;ERATE=0.0048;THETA=0.0122;AC=503;AN=2184 GT:DS:GL:BD 0.23031135 0 1 62779555 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.953;LDAF=0.0840;AVGPOST=0.9857;RSQ=0.9333;ERATE=0.0008;THETA=0.0013;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 62779603 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.1898;AVGPOST=0.9931;RSQ=0.9836;ERATE=0.0003;THETA=0.0022;AC=410;AN=2184 GT:DS:GL:BD 0.18772894 0 1 62779754 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.745;LDAF=0.0029;AVGPOST=0.9971;RSQ=0.6388;ERATE=0.0004;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62779839 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0080;AVGPOST=0.9983;RSQ=0.9119;ERATE=0.0004;THETA=0.0031;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62780038 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.6420;ERATE=0.0003;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62780052 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.709;LDAF=0.0019;AVGPOST=0.9983;RSQ=0.6439;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62780139 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.769;LDAF=0.0033;AVGPOST=0.9968;RSQ=0.6049;ERATE=0.0004;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62780161 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.766;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5817;ERATE=0.0004;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62780199 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.0636;AVGPOST=0.9950;RSQ=0.9712;ERATE=0.0005;THETA=0.0039;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 62780265 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0004;AVGPOST=0.9992;RSQ=0.3142;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62780295 . AGAAATACATACCAAAG A 1295 PASS INDEL;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0069;AVGPOST=0.9969;RSQ=0.8174;ERATE=0.0004;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62780337 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0022;AVGPOST=0.9979;RSQ=0.6966;ERATE=0.0005;THETA=0.0035;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62780469 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6305;ERATE=0.0004;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62780535 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9393;ERATE=0.0004;THETA=0.0035;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62780573 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0025;AVGPOST=0.9969;RSQ=0.4789;ERATE=0.0009;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62780637 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0159;AVGPOST=0.9988;RSQ=0.9702;ERATE=0.0003;THETA=0.0021;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62780688 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.992;LDAF=0.4708;AVGPOST=0.9937;RSQ=0.9904;ERATE=0.0004;THETA=0.0002;AC=1030;AN=2184 GT:DS:GL:BD 0.47161171 0 1 62780752 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8416;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62780781 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62780967 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0052;AVGPOST=0.9981;RSQ=0.8890;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62780968 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0456;AVGPOST=0.9989;RSQ=0.9905;ERATE=0.0003;THETA=0.0002;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 62781146 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9666;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62781147 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9713;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62781228 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0658;AVGPOST=0.9997;RSQ=0.9981;ERATE=0.0003;THETA=0.0006;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 62781239 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9799;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62781263 . AC A 68 PASS INDEL;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5242;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62781310 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.9014;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62781338 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9668;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62781491 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0654;AVGPOST=0.9999;RSQ=0.9991;ERATE=0.0003;THETA=0.0006;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 62781551 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6237;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62781555 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8588;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62781775 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0111;AVGPOST=0.9991;RSQ=0.9651;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62781780 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.2025;AVGPOST=0.9964;RSQ=0.9920;ERATE=0.0004;THETA=0.0006;AC=441;AN=2184 GT:DS:GL:BD 0.20192307 0 1 62781788 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0654;AVGPOST=0.9999;RSQ=0.9991;ERATE=0.0003;THETA=0.0003;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 62781800 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62781826 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9550;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62781830 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0656;AVGPOST=0.9994;RSQ=0.9959;ERATE=0.0004;THETA=0.0004;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 62781952 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0213;AVGPOST=0.9995;RSQ=0.9896;ERATE=0.0004;THETA=0.0005;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 62781960 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0055;AVGPOST=0.9977;RSQ=0.8383;ERATE=0.0005;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62782056 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62782397 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0043;AVGPOST=0.9994;RSQ=0.9349;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62782398 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0656;AVGPOST=0.9994;RSQ=0.9960;ERATE=0.0003;THETA=0.0003;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 62782419 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0659;AVGPOST=0.9989;RSQ=0.9940;ERATE=0.0003;THETA=0.0007;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 62782433 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6050;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62782493 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0655;AVGPOST=0.9996;RSQ=0.9972;ERATE=0.0003;THETA=0.0011;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 62782503 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5081;AVGPOST=0.9985;RSQ=0.9977;ERATE=0.0004;THETA=0.0005;AC=1110;AN=2184 GT:DS:GL:BD 0.50824177 1 1 62782504 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.792;LDAF=0.0047;AVGPOST=0.9957;RSQ=0.6171;ERATE=0.0021;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62782621 . G GA 869 PASS INDEL;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0098;AVGPOST=0.9960;RSQ=0.8392;ERATE=0.0010;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62782630 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0103;AVGPOST=0.9992;RSQ=0.9673;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62782743 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62782773 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5735;AVGPOST=0.9973;RSQ=0.9957;ERATE=0.0006;THETA=0.0019;AC=1253;AN=2184 GT:DS:GL:BD 0.57371795 1 1 62782860 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.939;LDAF=0.0196;AVGPOST=0.9964;RSQ=0.9252;ERATE=0.0003;THETA=0.0004;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 62782885 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.9176;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62783063 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.1041;ERATE=0.0003;THETA=0.0008;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62783068 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9614;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62783092 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7860;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62783234 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0075;AVGPOST=0.9987;RSQ=0.9212;ERATE=0.0005;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62783331 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8908;ERATE=0.0003;THETA=0.0025;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62783400 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0073;AVGPOST=0.9977;RSQ=0.8755;ERATE=0.0004;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62783469 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0018;AVGPOST=0.9996;RSQ=0.9122;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62783516 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5293;AVGPOST=0.9952;RSQ=0.9922;ERATE=0.0008;THETA=0.0002;AC=1157;AN=2184 GT:DS:GL:BD 0.52976191 1 1 62783569 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6160;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62783571 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62783935 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5723;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62783943 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0113;AVGPOST=0.9991;RSQ=0.9640;ERATE=0.0004;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62784015 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0112;AVGPOST=0.9992;RSQ=0.9697;ERATE=0.0004;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62784153 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4697;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62784251 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.714;LDAF=0.0020;AVGPOST=0.9978;RSQ=0.5380;ERATE=0.0005;THETA=0.0041;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62784541 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.5960;AVGPOST=0.9904;RSQ=0.9845;ERATE=0.0012;THETA=0.0016;AC=1306;AN=2184 GT:DS:GL:BD 0.59798533 1 1 62784600 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.955;LDAF=0.0275;AVGPOST=0.9870;RSQ=0.8208;ERATE=0.0010;THETA=0.0008;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 62784601 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.944;LDAF=0.0278;AVGPOST=0.9890;RSQ=0.8490;ERATE=0.0007;THETA=0.0008;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 62784625 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.941;LDAF=0.0210;AVGPOST=0.9967;RSQ=0.9235;ERATE=0.0005;THETA=0.0035;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 62784655 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.987;LDAF=0.5041;AVGPOST=0.9796;RSQ=0.9681;ERATE=0.0027;THETA=0.0003;AC=1105;AN=2184 GT:DS:GL:BD 0.50595236 1 1 62785030 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.316;LDAF=0.0080;AVGPOST=0.9892;RSQ=0.4007;ERATE=0.0012;THETA=0.0032;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62785031 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.695;LDAF=0.0293;AVGPOST=0.9653;RSQ=0.5111;ERATE=0.0021;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62785333 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0079;AVGPOST=0.9996;RSQ=0.9801;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62785341 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7267;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62785610 rs71814388 TTTG T 50651 PASS INDEL;BAVGPOST=0.986;BRSQ=0.979;LDAF=0.5039;AVGPOST=0.9681;RSQ=0.9497;ERATE=0.0087;THETA=0.0002;AC=1107;AN=2184 GT:DS:GL:BD 0.50686812 1 1 62785661 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0452;AVGPOST=0.9983;RSQ=0.9843;ERATE=0.0004;THETA=0.0002;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 62785775 . GCTAA G 2438 PASS INDEL;BAVGPOST=0.983;BRSQ=0.824;LDAF=0.0505;AVGPOST=0.9946;RSQ=0.9565;ERATE=0.0005;THETA=0.0002;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 62785780 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.610;LDAF=0.0020;AVGPOST=0.9968;RSQ=0.3451;ERATE=0.0008;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62785853 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.918;BRSQ=0.858;LDAF=0.5320;AVGPOST=0.8900;RSQ=0.8387;ERATE=0.0261;THETA=0.0005;AC=1203;AN=2184 GT:DS:GL:BD 0.55082417 1 1 62785894 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.812;LDAF=0.0139;AVGPOST=0.9917;RSQ=0.7502;ERATE=0.0004;THETA=0.0012;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 62785895 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.702;LDAF=0.0030;AVGPOST=0.9980;RSQ=0.7408;ERATE=0.0003;THETA=0.0030;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62785947 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.568;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7425;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62785951 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.596;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5392;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62786109 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0075;AVGPOST=0.9986;RSQ=0.9232;ERATE=0.0005;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62786226 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8341;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62786270 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62786354 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5081;AVGPOST=0.9976;RSQ=0.9963;ERATE=0.0005;THETA=0.0006;AC=1110;AN=2184 GT:DS:GL:BD 0.50824177 1 1 62786468 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62786483 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0327;AVGPOST=0.9979;RSQ=0.9766;ERATE=0.0004;THETA=0.0004;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 62786502 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0544;AVGPOST=0.9963;RSQ=0.9765;ERATE=0.0007;THETA=0.0003;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 62786702 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0030;AVGPOST=0.9968;RSQ=0.5816;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62786765 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0499;AVGPOST=0.9971;RSQ=0.9774;ERATE=0.0005;THETA=0.0003;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 62786870 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.985;LDAF=0.2059;AVGPOST=0.9914;RSQ=0.9800;ERATE=0.0006;THETA=0.0005;AC=450;AN=2184 GT:DS:GL:BD 0.20604396 0 1 62786933 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0101;AVGPOST=0.9975;RSQ=0.9122;ERATE=0.0006;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62786938 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0029;AVGPOST=0.9992;RSQ=0.9065;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62786943 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0515;AVGPOST=0.9991;RSQ=0.9918;ERATE=0.0003;THETA=0.0002;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 62786946 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0151;AVGPOST=0.9995;RSQ=0.9860;ERATE=0.0003;THETA=0.0018;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62787059 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0508;AVGPOST=0.9989;RSQ=0.9915;ERATE=0.0003;THETA=0.0003;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 62787102 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9991;RSQ=0.8923;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62787131 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.9127;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62787187 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7702;ERATE=0.0004;THETA=0.0038;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62787277 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0021;AVGPOST=0.9976;RSQ=0.5175;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62787580 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.696;LDAF=0.0043;AVGPOST=0.9966;RSQ=0.6748;ERATE=0.0006;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62787688 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.687;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.3282;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62787695 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0144;AVGPOST=0.9992;RSQ=0.9759;ERATE=0.0003;THETA=0.0008;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62787702 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.928;LDAF=0.0363;AVGPOST=0.9913;RSQ=0.9115;ERATE=0.0005;THETA=0.0004;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 62787757 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0042;AVGPOST=0.9997;RSQ=0.9637;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62787774 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.732;LDAF=0.0031;AVGPOST=0.9986;RSQ=0.8084;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62787819 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2275;AVGPOST=0.9967;RSQ=0.9928;ERATE=0.0007;THETA=0.0006;AC=495;AN=2184 GT:DS:GL:BD 0.22664835 0 1 62787973 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6617;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62787991 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.989;LDAF=0.2094;AVGPOST=0.9955;RSQ=0.9900;ERATE=0.0006;THETA=0.0006;AC=456;AN=2184 GT:DS:GL:BD 0.20879121 0 1 62788015 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62788114 . AG A 207 PASS INDEL;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62788123 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.8621;AVGPOST=0.9970;RSQ=0.9908;ERATE=0.0004;THETA=0.0004;AC=1885;AN=2184 GT:DS:GL:BD 0.86309522 1 1 62788148 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.824;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7409;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62788295 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0507;AVGPOST=0.9990;RSQ=0.9928;ERATE=0.0003;THETA=0.0004;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 62788296 . ACTAT A 35 PASS INDEL;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62788443 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7273;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62788511 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5038;AVGPOST=0.9983;RSQ=0.9970;ERATE=0.0003;THETA=0.0025;AC=1101;AN=2184 GT:DS:GL:BD 0.50412089 1 1 62788512 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62788586 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0059;AVGPOST=0.9970;RSQ=0.7988;ERATE=0.0008;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62788611 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0145;AVGPOST=0.9989;RSQ=0.9706;ERATE=0.0003;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 62788632 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0048;AVGPOST=0.9974;RSQ=0.8068;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62788650 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0028;AVGPOST=0.9975;RSQ=0.5965;ERATE=0.0021;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62788695 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.978;LDAF=0.7824;AVGPOST=0.9777;RSQ=0.9532;ERATE=0.0017;THETA=0.0004;AC=1727;AN=2184 GT:DS:GL:BD 0.79075092 1 1 62788725 . A AC 2847 PASS INDEL;BAVGPOST=0.984;BRSQ=0.848;LDAF=0.0513;AVGPOST=0.9965;RSQ=0.9740;ERATE=0.0004;THETA=0.0006;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 62788756 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0045;AVGPOST=0.9993;RSQ=0.9223;ERATE=0.0005;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62788957 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.506;LDAF=0.0005;AVGPOST=0.9991;RSQ=0.2993;ERATE=0.0003;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62788975 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0089;AVGPOST=0.9987;RSQ=0.9387;ERATE=0.0003;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62789043 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9215;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62789078 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0041;AVGPOST=0.9981;RSQ=0.8129;ERATE=0.0009;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62789111 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.850;LDAF=0.0041;AVGPOST=0.9990;RSQ=0.8880;ERATE=0.0006;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62789340 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6196;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62789473 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6506;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62789490 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62789496 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0082;AVGPOST=0.9993;RSQ=0.9646;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62789608 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0184;AVGPOST=0.9996;RSQ=0.9890;ERATE=0.0003;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 62789736 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0158;AVGPOST=0.9979;RSQ=0.9420;ERATE=0.0004;THETA=0.0004;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62789838 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62789893 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6221;ERATE=0.0005;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62789918 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0158;AVGPOST=0.9976;RSQ=0.9345;ERATE=0.0004;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 62790037 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0092;AVGPOST=0.9988;RSQ=0.9447;ERATE=0.0009;THETA=0.0010;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62790046 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.749;LDAF=0.0037;AVGPOST=0.9978;RSQ=0.7536;ERATE=0.0007;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62790095 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.762;LDAF=0.0144;AVGPOST=0.9920;RSQ=0.7825;ERATE=0.0006;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 62790100 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.709;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.4041;ERATE=0.0006;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62790122 . GA G 20 PASS INDEL;BAVGPOST=0.975;BRSQ=0.481;LDAF=0.0301;AVGPOST=0.9563;RSQ=0.4295;ERATE=0.0085;THETA=0.0007;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62790130 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.977;LDAF=0.4945;AVGPOST=0.9883;RSQ=0.9821;ERATE=0.0020;THETA=0.0005;AC=1084;AN=2184 GT:DS:GL:BD 0.49633700 0 1 62790133 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.960;LDAF=0.0521;AVGPOST=0.9975;RSQ=0.9818;ERATE=0.0005;THETA=0.0005;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 62790133 . A AT 833 PASS INDEL;BAVGPOST=0.992;BRSQ=0.916;LDAF=0.0511;AVGPOST=0.9980;RSQ=0.9856;ERATE=0.0003;THETA=0.0003;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 62790247 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2096;AVGPOST=0.9985;RSQ=0.9961;ERATE=0.0004;THETA=0.0006;AC=457;AN=2184 GT:DS:GL:BD 0.20924908 0 1 62790275 . A AT 291 PASS INDEL;BAVGPOST=0.960;BRSQ=0.486;LDAF=0.0557;AVGPOST=0.9357;RSQ=0.4952;ERATE=0.0124;THETA=0.0006;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 62790278 . TA T 9820 PASS INDEL;BAVGPOST=0.876;BRSQ=0.778;LDAF=0.4128;AVGPOST=0.8921;RSQ=0.8397;ERATE=0.0082;THETA=0.0003;AC=966;AN=2184 GT:DS:GL:BD 0.44230768 0 1 62790279 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.969;LDAF=0.4626;AVGPOST=0.9707;RSQ=0.9551;ERATE=0.0044;THETA=0.0009;AC=1019;AN=2184 GT:DS:GL:BD 0.46657509 0 1 62790364 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.737;LDAF=0.0029;AVGPOST=0.9957;RSQ=0.4380;ERATE=0.0006;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62790404 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4396;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62790418 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0069;AVGPOST=0.9988;RSQ=0.9236;ERATE=0.0004;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62790525 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.560;LDAF=0.0051;AVGPOST=0.9926;RSQ=0.3927;ERATE=0.0010;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62790549 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.964;LDAF=0.1273;AVGPOST=0.9759;RSQ=0.9214;ERATE=0.0017;THETA=0.0004;AC=275;AN=2184 GT:DS:GL:BD 0.12591575 0 1 62790665 . CT C 215 PASS INDEL;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9035;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62790668 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4825;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62790718 . CT C 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7219;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62790778 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2094;AVGPOST=0.9984;RSQ=0.9959;ERATE=0.0004;THETA=0.0040;AC=457;AN=2184 GT:DS:GL:BD 0.20924908 0 1 62790905 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6133;ERATE=0.0004;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62790906 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7795;ERATE=0.0010;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62790927 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8523;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62790944 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62791051 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62791152 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0085;AVGPOST=0.9986;RSQ=0.9381;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62791153 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.0545;AVGPOST=0.9987;RSQ=0.9905;ERATE=0.0005;THETA=0.0005;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 62791187 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5006;AVGPOST=0.9957;RSQ=0.9931;ERATE=0.0007;THETA=0.0005;AC=1096;AN=2184 GT:DS:GL:BD 0.50183153 1 1 62791269 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.945;LDAF=0.0109;AVGPOST=0.9971;RSQ=0.9084;ERATE=0.0004;THETA=0.0013;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 62791299 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5096;AVGPOST=0.9956;RSQ=0.9935;ERATE=0.0004;THETA=0.0003;AC=1115;AN=2184 GT:DS:GL:BD 0.51053113 1 1 62791310 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62791311 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0070;AVGPOST=0.9997;RSQ=0.9807;ERATE=0.0004;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62791376 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8802;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62791452 . G GATCA 164 PASS INDEL;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62791563 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9595;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62791652 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.2943;AVGPOST=0.9947;RSQ=0.9901;ERATE=0.0010;THETA=0.0021;AC=641;AN=2184 GT:DS:GL:BD 0.29349816 0 1 62791707 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7177;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62791745 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4201;AVGPOST=0.9962;RSQ=0.9944;ERATE=0.0005;THETA=0.0004;AC=917;AN=2184 GT:DS:GL:BD 0.41987181 0 1 62791795 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8702;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62792010 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.593;LDAF=0.0038;AVGPOST=0.9950;RSQ=0.4288;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62792224 . C CT 10 PASS INDEL;BAVGPOST=0.996;BRSQ=0.343;LDAF=0.0123;AVGPOST=0.9824;RSQ=0.4579;ERATE=0.0019;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62792483 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8425;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62792541 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0147;AVGPOST=0.9996;RSQ=0.9878;ERATE=0.0003;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 62792697 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62792739 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5035;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62792910 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9544;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62793068 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9197;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62793227 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8426;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62793258 . T TGG 291 PASS INDEL;BAVGPOST=0.999;BRSQ=0.759;LDAF=0.0042;AVGPOST=0.9979;RSQ=0.7895;ERATE=0.0007;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62793697 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4251;AVGPOST=0.9960;RSQ=0.9936;ERATE=0.0006;THETA=0.0006;AC=931;AN=2184 GT:DS:GL:BD 0.42628205 0 1 62793720 rs57515202 CA C 21216 PASS INDEL;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2948;AVGPOST=0.9972;RSQ=0.9942;ERATE=0.0004;THETA=0.0007;AC=643;AN=2184 GT:DS:GL:BD 0.29441392 0 1 62793892 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62794009 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62794013 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.4248;AVGPOST=0.9982;RSQ=0.9973;ERATE=0.0004;THETA=0.0002;AC=929;AN=2184 GT:DS:GL:BD 0.42536631 0 1 62794059 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.7702;AVGPOST=0.9977;RSQ=0.9947;ERATE=0.0003;THETA=0.0003;AC=1684;AN=2184 GT:DS:GL:BD 0.77106225 1 1 62794151 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0133;AVGPOST=0.9997;RSQ=0.9885;ERATE=0.0003;THETA=0.0002;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 62794161 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6944;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62794219 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62794232 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62794241 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0018;AVGPOST=0.9994;RSQ=0.8649;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62794331 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0024;AVGPOST=0.9990;RSQ=0.8377;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62794459 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0004;AVGPOST=0.9996;RSQ=0.6330;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62794535 . AG A 127 PASS INDEL;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6162;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62794587 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0024;AVGPOST=0.9984;RSQ=0.7749;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62794667 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62794676 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4247;AVGPOST=0.9978;RSQ=0.9966;ERATE=0.0004;THETA=0.0004;AC=929;AN=2184 GT:DS:GL:BD 0.42536631 0 1 62794692 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0019;AVGPOST=0.9994;RSQ=0.8668;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62794715 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.972;LDAF=0.0201;AVGPOST=0.9984;RSQ=0.9681;ERATE=0.0003;THETA=0.0004;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 62794951 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7136;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62794953 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6843;ERATE=0.0006;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62795049 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.871;LDAF=0.0057;AVGPOST=0.9981;RSQ=0.8559;ERATE=0.0004;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62795105 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8061;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62795172 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0054;AVGPOST=0.9988;RSQ=0.9042;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62795233 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.938;LDAF=0.0064;AVGPOST=0.9985;RSQ=0.9042;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62795238 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.8958;ERATE=0.0003;THETA=0.0025;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62795322 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0052;AVGPOST=0.9982;RSQ=0.8661;ERATE=0.0005;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62795399 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0033;AVGPOST=0.9973;RSQ=0.7254;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62795490 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.969;LDAF=0.4213;AVGPOST=0.9850;RSQ=0.9773;ERATE=0.0011;THETA=0.0005;AC=924;AN=2184 GT:DS:GL:BD 0.42307693 0 1 62795666 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0036;AVGPOST=0.9987;RSQ=0.8521;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62795757 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0027;AVGPOST=0.9978;RSQ=0.6782;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62795774 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0021;AVGPOST=0.9982;RSQ=0.6701;ERATE=0.0007;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62795851 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6629;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62795944 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8923;ERATE=0.0008;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62795971 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62796077 . G GT 1629 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9998;RSQ=0.9861;ERATE=0.0003;THETA=0.0021;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62796116 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0078;AVGPOST=0.9989;RSQ=0.9504;ERATE=0.0003;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62796124 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0069;AVGPOST=0.9998;RSQ=0.9872;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62796247 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0033;AVGPOST=0.9992;RSQ=0.9166;ERATE=0.0006;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62796379 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0034;AVGPOST=0.9987;RSQ=0.8633;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62796439 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6406;ERATE=0.0004;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62796627 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7218;ERATE=0.0003;THETA=0.0035;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62796657 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.896;LDAF=0.0104;AVGPOST=0.9976;RSQ=0.9047;ERATE=0.0004;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62796711 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.4227;AVGPOST=0.9932;RSQ=0.9898;ERATE=0.0011;THETA=0.0024;AC=925;AN=2184 GT:DS:GL:BD 0.42353481 0 1 62796716 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.760;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6346;ERATE=0.0007;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62796833 rs113173395 G GT 155 PASS INDEL;BAVGPOST=0.987;BRSQ=0.507;LDAF=0.0206;AVGPOST=0.9725;RSQ=0.4318;ERATE=0.0073;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62796845 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.701;LDAF=0.0067;AVGPOST=0.9939;RSQ=0.6237;ERATE=0.0013;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62796896 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.982;LDAF=0.7622;AVGPOST=0.9862;RSQ=0.9699;ERATE=0.0018;THETA=0.0005;AC=1670;AN=2184 GT:DS:GL:BD 0.76465201 1 1 62796919 . T TCCG 13815 PASS INDEL;BAVGPOST=0.834;BRSQ=0.716;LDAF=0.5651;AVGPOST=0.7852;RSQ=0.6763;ERATE=0.0580;THETA=0.0010;AC=1334;AN=2184 GT:DS:GL:BD 0.61080587 1 1 62796971 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.663;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4085;ERATE=0.0007;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62797099 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62797101 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7763;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62797160 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62797288 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5736;ERATE=0.0003;THETA=0.0046;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62797294 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8377;ERATE=0.0007;THETA=0.0027;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62797677 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1350;AVGPOST=0.9962;RSQ=0.9874;ERATE=0.0004;THETA=0.0004;AC=295;AN=2184 GT:DS:GL:BD 0.13507326 0 1 62797715 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62797852 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.8607;AVGPOST=0.9974;RSQ=0.9922;ERATE=0.0003;THETA=0.0004;AC=1880;AN=2184 GT:DS:GL:BD 0.86080587 1 1 62797936 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0022;AVGPOST=0.9981;RSQ=0.6853;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62797950 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0028;AVGPOST=0.9984;RSQ=0.7585;ERATE=0.0004;THETA=0.0029;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62798027 . AG A 450 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0036;AVGPOST=0.9982;RSQ=0.7983;ERATE=0.0006;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62798053 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9994;RSQ=0.9693;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62798105 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.969;LDAF=0.3964;AVGPOST=0.9812;RSQ=0.9722;ERATE=0.0021;THETA=0.0008;AC=863;AN=2184 GT:DS:GL:BD 0.39514652 0 1 62798116 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62798174 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0050;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62798230 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9984;RSQ=0.7354;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62798346 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0072;AVGPOST=0.9992;RSQ=0.9552;ERATE=0.0005;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62798373 . CA C 175 PASS INDEL;BAVGPOST=0.991;BRSQ=0.653;LDAF=0.0194;AVGPOST=0.9769;RSQ=0.5019;ERATE=0.0086;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62798506 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8198;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62798521 . T TACAAA 263 PASS INDEL;BAVGPOST=0.999;BRSQ=0.773;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6247;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62798524 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9397;ERATE=0.0008;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62798582 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0132;AVGPOST=0.9980;RSQ=0.9402;ERATE=0.0004;THETA=0.0054;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62798616 . CAT C 1299 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0069;AVGPOST=0.9998;RSQ=0.9860;ERATE=0.0003;THETA=0.0011;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62798669 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.982;LDAF=0.2955;AVGPOST=0.9901;RSQ=0.9830;ERATE=0.0012;THETA=0.0006;AC=643;AN=2184 GT:DS:GL:BD 0.29441392 0 1 62798754 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0023;AVGPOST=0.9992;RSQ=0.8644;ERATE=0.0004;THETA=0.0033;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62798773 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8318;ERATE=0.0009;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62798796 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5396;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62798883 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9789;ERATE=0.0003;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62798901 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.672;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7491;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62798968 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0430;AVGPOST=0.9984;RSQ=0.9870;ERATE=0.0003;THETA=0.0007;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 62799156 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.859;LDAF=0.0044;AVGPOST=0.9987;RSQ=0.8758;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62799249 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62799332 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4966;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62799345 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.7033;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62799377 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7883;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62799419 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0031;AVGPOST=0.9988;RSQ=0.8513;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62799451 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.990;LDAF=0.8292;AVGPOST=0.9976;RSQ=0.9931;ERATE=0.0005;THETA=0.0008;AC=1812;AN=2184 GT:DS:GL:BD 0.82967031 1 1 62799471 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.982;LDAF=0.0773;AVGPOST=0.9954;RSQ=0.9760;ERATE=0.0003;THETA=0.0003;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 62799523 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0053;AVGPOST=0.9962;RSQ=0.6920;ERATE=0.0010;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62799534 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6200;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62799562 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.3889;ERATE=0.0006;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62799799 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4467;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62799813 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.719;LDAF=0.0420;AVGPOST=0.9649;RSQ=0.6453;ERATE=0.0095;THETA=0.0008;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 62799901 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0048;AVGPOST=0.9996;RSQ=0.9636;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62800016 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.8019;AVGPOST=0.9985;RSQ=0.9963;ERATE=0.0003;THETA=0.0005;AC=1753;AN=2184 GT:DS:GL:BD 0.80265570 1 1 62800018 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.924;LDAF=0.0088;AVGPOST=0.9983;RSQ=0.9259;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62800018 . G GT 169 PASS INDEL;BAVGPOST=0.997;BRSQ=0.923;LDAF=0.0095;AVGPOST=0.9969;RSQ=0.8829;ERATE=0.0004;THETA=0.0119;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62800125 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6302;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62800129 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6347;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62800144 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8261;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62800150 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0018;AVGPOST=0.9988;RSQ=0.7374;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62800286 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0415;AVGPOST=0.9984;RSQ=0.9865;ERATE=0.0003;THETA=0.0030;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 62800347 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.964;LDAF=0.0210;AVGPOST=0.9981;RSQ=0.9629;ERATE=0.0004;THETA=0.0004;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 62800438 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62800509 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7379;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62800571 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0041;AVGPOST=1.0000;RSQ=0.9947;ERATE=0.0003;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62800683 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.855;LDAF=0.0055;AVGPOST=0.9977;RSQ=0.8429;ERATE=0.0004;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62800722 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0058;AVGPOST=0.9993;RSQ=0.9410;ERATE=0.0004;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62800732 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.820;LDAF=0.0053;AVGPOST=0.9961;RSQ=0.7347;ERATE=0.0005;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62800794 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0466;AVGPOST=0.9952;RSQ=0.9650;ERATE=0.0021;THETA=0.0009;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 62800928 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.690;LDAF=0.0055;AVGPOST=0.9943;RSQ=0.6173;ERATE=0.0005;THETA=0.0015;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62801034 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6122;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62801041 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.551;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6084;ERATE=0.0006;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62801140 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0423;AVGPOST=0.9975;RSQ=0.9781;ERATE=0.0008;THETA=0.0007;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 62801142 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.753;LDAF=0.0033;AVGPOST=0.9981;RSQ=0.7607;ERATE=0.0005;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62801172 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5846;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62801240 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.8617;AVGPOST=0.9983;RSQ=0.9943;ERATE=0.0003;THETA=0.0004;AC=1883;AN=2184 GT:DS:GL:BD 0.86217946 1 1 62801302 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62801306 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62801510 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.7926;AVGPOST=0.9964;RSQ=0.9914;ERATE=0.0016;THETA=0.0005;AC=1730;AN=2184 GT:DS:GL:BD 0.79212457 1 1 62801540 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.987;LDAF=0.1282;AVGPOST=0.9946;RSQ=0.9822;ERATE=0.0003;THETA=0.0007;AC=280;AN=2184 GT:DS:GL:BD 0.12820514 0 1 62801567 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62801767 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0049;AVGPOST=0.9952;RSQ=0.6599;ERATE=0.0012;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62801785 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0360;AVGPOST=0.9976;RSQ=0.9744;ERATE=0.0006;THETA=0.0006;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 62801872 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.3224;AVGPOST=0.9933;RSQ=0.9888;ERATE=0.0009;THETA=0.0028;AC=705;AN=2184 GT:DS:GL:BD 0.32280219 0 1 62802108 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.8277;AVGPOST=0.9970;RSQ=0.9911;ERATE=0.0007;THETA=0.0006;AC=1810;AN=2184 GT:DS:GL:BD 0.82875460 1 1 62802305 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7836;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62802311 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62802361 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0416;AVGPOST=0.9990;RSQ=0.9910;ERATE=0.0003;THETA=0.0005;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 62802434 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.751;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5624;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62802437 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.7199;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62802457 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.524;LDAF=0.0037;AVGPOST=0.9945;RSQ=0.4187;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62802575 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0419;AVGPOST=0.9981;RSQ=0.9847;ERATE=0.0003;THETA=0.0009;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 62802618 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8384;AVGPOST=0.9984;RSQ=0.9951;ERATE=0.0005;THETA=0.0014;AC=1832;AN=2184 GT:DS:GL:BD 0.83882785 1 1 62802689 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0273;AVGPOST=0.9975;RSQ=0.9635;ERATE=0.0004;THETA=0.0007;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 62802827 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8767;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62802894 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8523;ERATE=0.0004;THETA=0.0023;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62802936 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8271;AVGPOST=0.9981;RSQ=0.9940;ERATE=0.0005;THETA=0.0005;AC=1807;AN=2184 GT:DS:GL:BD 0.82738096 1 1 62802947 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.3217;AVGPOST=0.9934;RSQ=0.9889;ERATE=0.0005;THETA=0.0013;AC=701;AN=2184 GT:DS:GL:BD 0.32097068 0 1 62803032 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8604;AVGPOST=0.9969;RSQ=0.9896;ERATE=0.0005;THETA=0.0007;AC=1882;AN=2184 GT:DS:GL:BD 0.86172163 1 1 62803040 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0053;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62803060 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.983;LDAF=0.4106;AVGPOST=0.9842;RSQ=0.9766;ERATE=0.0007;THETA=0.0012;AC=897;AN=2184 GT:DS:GL:BD 0.41071430 0 1 62803069 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.736;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5423;ERATE=0.0004;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62803079 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.984;LDAF=0.3911;AVGPOST=0.9859;RSQ=0.9785;ERATE=0.0005;THETA=0.0021;AC=852;AN=2184 GT:DS:GL:BD 0.39010990 0 1 62803152 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62803169 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6273;ERATE=0.0004;THETA=0.0089;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62803190 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.8326;AVGPOST=0.9957;RSQ=0.9875;ERATE=0.0004;THETA=0.0010;AC=1820;AN=2184 GT:DS:GL:BD 0.83333331 1 1 62803200 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7435;ERATE=0.0008;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62803211 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.987;LDAF=0.8223;AVGPOST=0.9944;RSQ=0.9845;ERATE=0.0007;THETA=0.0042;AC=1798;AN=2184 GT:DS:GL:BD 0.82326007 1 1 62803224 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6809;ERATE=0.0005;THETA=0.0127;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62803241 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.529;LDAF=0.0022;AVGPOST=0.9974;RSQ=0.5045;ERATE=0.0016;THETA=0.0039;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62803277 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.917;LDAF=0.1375;AVGPOST=0.9642;RSQ=0.8969;ERATE=0.0006;THETA=0.0060;AC=289;AN=2184 GT:DS:GL:BD 0.13232601 0 1 62803476 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.929;LDAF=0.8035;AVGPOST=0.9751;RSQ=0.9372;ERATE=0.0023;THETA=0.0042;AC=1766;AN=2184 GT:DS:GL:BD 0.80860806 1 1 62803483 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.755;LDAF=0.0160;AVGPOST=0.9909;RSQ=0.7759;ERATE=0.0005;THETA=0.0093;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62803496 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.649;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6175;ERATE=0.0004;THETA=0.0039;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62803497 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.925;LDAF=0.8101;AVGPOST=0.9634;RSQ=0.9049;ERATE=0.0036;THETA=0.0020;AC=1785;AN=2184 GT:DS:GL:BD 0.81730771 1 1 62803595 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6252;ERATE=0.0004;THETA=0.0051;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62803655 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6037;ERATE=0.0004;THETA=0.0189;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62803709 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0042;AVGPOST=0.9983;RSQ=0.8361;ERATE=0.0003;THETA=0.0041;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62803731 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.960;LDAF=0.8462;AVGPOST=0.9867;RSQ=0.9610;ERATE=0.0005;THETA=0.0199;AC=1853;AN=2184 GT:DS:GL:BD 0.84844321 1 1 62803803 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.937;LDAF=0.8437;AVGPOST=0.9724;RSQ=0.9232;ERATE=0.0013;THETA=0.0030;AC=1855;AN=2184 GT:DS:GL:BD 0.84935898 1 1 62803814 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.917;LDAF=0.8052;AVGPOST=0.9565;RSQ=0.9045;ERATE=0.0025;THETA=0.0168;AC=1768;AN=2184 GT:DS:GL:BD 0.80952382 1 1 62803872 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.585;LDAF=0.0257;AVGPOST=0.9720;RSQ=0.5344;ERATE=0.0085;THETA=0.0085;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 62803928 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.782;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8757;ERATE=0.0003;THETA=0.0194;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62803931 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4989;ERATE=0.0003;THETA=0.0132;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62803975 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.816;LDAF=0.0029;AVGPOST=0.9979;RSQ=0.7103;ERATE=0.0013;THETA=0.0195;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62804000 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0094;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62804063 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9075;ERATE=0.0003;THETA=0.0056;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62804072 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.795;LDAF=0.0035;AVGPOST=0.9983;RSQ=0.8098;ERATE=0.0008;THETA=0.0103;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62804103 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62804108 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7607;ERATE=0.0003;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62804109 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.720;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6540;ERATE=0.0003;THETA=0.0147;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62804139 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.905;LDAF=0.0109;AVGPOST=0.9963;RSQ=0.8580;ERATE=0.0005;THETA=0.0160;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62804207 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0044;AVGPOST=0.9983;RSQ=0.8263;ERATE=0.0007;THETA=0.0063;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62804254 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.751;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.6188;ERATE=0.0005;THETA=0.0197;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62804287 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5571;ERATE=0.0004;THETA=0.0155;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62804403 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.767;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.6683;ERATE=0.0013;THETA=0.0158;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62804411 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5838;ERATE=0.0004;THETA=0.0104;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62804422 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4808;ERATE=0.0003;THETA=0.0140;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62804459 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0031;AVGPOST=0.9980;RSQ=0.7249;ERATE=0.0016;THETA=0.0066;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62804514 . A AG 7 PASS INDEL;BAVGPOST=0.998;BRSQ=0.625;LDAF=0.0042;AVGPOST=0.9932;RSQ=0.3194;ERATE=0.0010;THETA=0.0025;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62804517 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.847;LDAF=0.0498;AVGPOST=0.9820;RSQ=0.8726;ERATE=0.0018;THETA=0.0098;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 62804536 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.908;BRSQ=0.778;LDAF=0.2479;AVGPOST=0.9049;RSQ=0.8156;ERATE=0.0116;THETA=0.0086;AC=488;AN=2184 GT:DS:GL:BD 0.22344323 0 1 62804544 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.4210;ERATE=0.0004;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62804545 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.845;LDAF=0.0620;AVGPOST=0.9752;RSQ=0.8480;ERATE=0.0007;THETA=0.0095;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 62804669 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.691;LDAF=0.0034;AVGPOST=0.9951;RSQ=0.3942;ERATE=0.0006;THETA=0.0214;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62804672 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.613;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3799;ERATE=0.0007;THETA=0.0155;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62804684 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.413;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.3625;ERATE=0.0005;THETA=0.0152;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62804685 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.629;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4425;ERATE=0.0005;THETA=0.0122;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62804719 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.908;BRSQ=0.755;LDAF=0.2114;AVGPOST=0.8970;RSQ=0.7767;ERATE=0.0286;THETA=0.0083;AC=396;AN=2184 GT:DS:GL:BD 0.18131869 0 1 62804800 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.763;LDAF=0.0057;AVGPOST=0.9956;RSQ=0.6895;ERATE=0.0010;THETA=0.0105;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62804814 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5838;ERATE=0.0004;THETA=0.0109;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62804885 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6453;ERATE=0.0003;THETA=0.0216;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62804908 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.644;LDAF=0.0023;AVGPOST=0.9974;RSQ=0.5527;ERATE=0.0005;THETA=0.0088;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62804944 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7227;ERATE=0.0003;THETA=0.0298;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62804967 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.962;LDAF=0.1057;AVGPOST=0.9893;RSQ=0.9639;ERATE=0.0055;THETA=0.0111;AC=226;AN=2184 GT:DS:GL:BD 0.10347985 0 1 62804974 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0004;AVGPOST=0.9993;RSQ=0.3730;ERATE=0.0003;THETA=0.0101;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62805010 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.968;LDAF=0.0846;AVGPOST=0.9911;RSQ=0.9665;ERATE=0.0022;THETA=0.0188;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 62805017 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.5977;ERATE=0.0003;THETA=0.0057;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62805064 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0029;AVGPOST=0.9978;RSQ=0.6971;ERATE=0.0007;THETA=0.0162;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62805072 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0145;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62805112 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.944;LDAF=0.0255;AVGPOST=0.9967;RSQ=0.9475;ERATE=0.0008;THETA=0.0036;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 62805126 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0035;AVGPOST=0.9978;RSQ=0.7535;ERATE=0.0005;THETA=0.0044;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62805139 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.937;BRSQ=0.893;LDAF=0.4776;AVGPOST=0.9311;RSQ=0.9019;ERATE=0.0041;THETA=0.0027;AC=1039;AN=2184 GT:DS:GL:BD 0.47573259 0 1 62805217 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0020;AVGPOST=0.9991;RSQ=0.8202;ERATE=0.0004;THETA=0.0045;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62805318 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.945;LDAF=0.2888;AVGPOST=0.9703;RSQ=0.9511;ERATE=0.0034;THETA=0.0062;AC=623;AN=2184 GT:DS:GL:BD 0.28525642 0 1 62805522 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0192;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62805634 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.858;LDAF=0.0046;AVGPOST=0.9991;RSQ=0.9112;ERATE=0.0005;THETA=0.0075;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62805637 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7368;ERATE=0.0004;THETA=0.0066;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62805790 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.934;LDAF=0.0218;AVGPOST=0.9946;RSQ=0.9095;ERATE=0.0003;THETA=0.0058;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 62805834 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9535;ERATE=0.0003;THETA=0.0093;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62805996 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0642;AVGPOST=0.9978;RSQ=0.9882;ERATE=0.0003;THETA=0.0009;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 62806048 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0024;AVGPOST=0.9967;RSQ=0.4323;ERATE=0.0010;THETA=0.0091;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62806052 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0027;AVGPOST=0.9977;RSQ=0.6766;ERATE=0.0007;THETA=0.0021;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62806144 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.920;LDAF=0.0091;AVGPOST=0.9967;RSQ=0.8661;ERATE=0.0006;THETA=0.0059;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62806199 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.622;LDAF=0.0121;AVGPOST=0.9854;RSQ=0.5249;ERATE=0.0027;THETA=0.0059;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62806216 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.631;LDAF=0.0035;AVGPOST=0.9967;RSQ=0.5902;ERATE=0.0009;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62806274 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62806278 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.1691;AVGPOST=0.9923;RSQ=0.9800;ERATE=0.0005;THETA=0.0012;AC=367;AN=2184 GT:DS:GL:BD 0.16804029 0 1 62806294 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6208;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62806441 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6082;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62806529 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5655;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62806580 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8425;ERATE=0.0013;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62806588 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62806638 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6328;ERATE=0.0003;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62806640 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0035;AVGPOST=0.9985;RSQ=0.8476;ERATE=0.0014;THETA=0.0022;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62806657 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8286;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62806700 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7605;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62806781 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.982;LDAF=0.0538;AVGPOST=0.9973;RSQ=0.9795;ERATE=0.0003;THETA=0.0011;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 62806782 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0024;AVGPOST=0.9992;RSQ=0.8522;ERATE=0.0006;THETA=0.0019;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62806837 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8495;ERATE=0.0004;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62806850 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.0559;AVGPOST=0.9967;RSQ=0.9820;ERATE=0.0004;THETA=0.0024;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 62806886 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62806897 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0101;AVGPOST=0.9994;RSQ=0.9731;ERATE=0.0003;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62806959 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7227;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62807041 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62807045 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.1991;AVGPOST=0.9986;RSQ=0.9970;ERATE=0.0003;THETA=0.0006;AC=433;AN=2184 GT:DS:GL:BD 0.19826007 0 1 62807229 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6798;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62807335 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7620;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62807409 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1124;AVGPOST=0.9983;RSQ=0.9943;ERATE=0.0005;THETA=0.0007;AC=245;AN=2184 GT:DS:GL:BD 0.11217949 0 1 62807536 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.908;LDAF=0.0490;AVGPOST=0.9915;RSQ=0.9295;ERATE=0.0004;THETA=0.0010;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 62807599 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8664;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62807664 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6520;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62807676 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6904;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62807825 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0056;AVGPOST=0.9980;RSQ=0.8720;ERATE=0.0003;THETA=0.0012;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62807830 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62807877 . C CT 22590 PASS INDEL;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0933;AVGPOST=0.9979;RSQ=0.9911;ERATE=0.0004;THETA=0.0009;AC=203;AN=2184 GT:DS:GL:BD 0.09294872 0 1 62807995 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0092;AVGPOST=0.9991;RSQ=0.9595;ERATE=0.0003;THETA=0.0008;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62808027 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62808077 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62808083 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0081;AVGPOST=0.9987;RSQ=0.9378;ERATE=0.0003;THETA=0.0045;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62808178 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.6544;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62808237 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8806;ERATE=0.0003;THETA=0.0023;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62808239 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.982;LDAF=0.3045;AVGPOST=0.9904;RSQ=0.9847;ERATE=0.0006;THETA=0.0027;AC=661;AN=2184 GT:DS:GL:BD 0.30265567 0 1 62808458 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0040;AVGPOST=0.9983;RSQ=0.8292;ERATE=0.0007;THETA=0.0012;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62808468 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7434;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62808469 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8322;ERATE=0.0008;THETA=0.0021;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62808479 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0022;AVGPOST=0.9980;RSQ=0.6484;ERATE=0.0005;THETA=0.0034;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62808525 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9780;ERATE=0.0003;THETA=0.0027;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62808562 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8566;ERATE=0.0004;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62808637 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0275;AVGPOST=0.9989;RSQ=0.9856;ERATE=0.0003;THETA=0.0009;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 62808744 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.835;LDAF=0.0068;AVGPOST=0.9968;RSQ=0.8298;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62808765 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0848;AVGPOST=0.9979;RSQ=0.9908;ERATE=0.0003;THETA=0.0026;AC=182;AN=2184 GT:DS:GL:BD 0.08333334 0 1 62808796 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7716;ERATE=0.0015;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62808964 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0040;AVGPOST=0.9984;RSQ=0.8556;ERATE=0.0003;THETA=0.0029;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62809030 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.686;LDAF=0.0572;AVGPOST=0.9586;RSQ=0.6897;ERATE=0.0253;THETA=0.0013;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 62809053 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0181;AVGPOST=0.9986;RSQ=0.9679;ERATE=0.0004;THETA=0.0009;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 62809065 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0083;AVGPOST=0.9973;RSQ=0.8715;ERATE=0.0006;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62809216 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0215;AVGPOST=0.9978;RSQ=0.9625;ERATE=0.0005;THETA=0.0017;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 62809259 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0098;AVGPOST=0.9990;RSQ=0.9549;ERATE=0.0005;THETA=0.0011;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62809278 . C CGTTG 86 PASS INDEL;BAVGPOST=1.000;BRSQ=0.713;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4607;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62809367 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0929;AVGPOST=0.9953;RSQ=0.9833;ERATE=0.0004;THETA=0.0023;AC=202;AN=2184 GT:DS:GL:BD 0.09249084 0 1 62809409 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6245;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62809432 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7986;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62809738 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.619;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5387;ERATE=0.0004;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62809764 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.603;LDAF=0.0027;AVGPOST=0.9982;RSQ=0.6907;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62809780 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6082;ERATE=0.0005;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62809982 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1778;AVGPOST=0.9961;RSQ=0.9914;ERATE=0.0004;THETA=0.0007;AC=387;AN=2184 GT:DS:GL:BD 0.17719780 0 1 62810031 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0004;AVGPOST=0.9997;RSQ=0.7060;ERATE=0.0003;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62810078 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9562;ERATE=0.0003;THETA=0.0022;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62810141 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62810155 . TCTGA T 415 PASS INDEL;BAVGPOST=0.998;BRSQ=0.859;LDAF=0.0074;AVGPOST=0.9972;RSQ=0.8528;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62810229 . GGT G 33 PASS INDEL;BAVGPOST=0.997;BRSQ=0.729;LDAF=0.0112;AVGPOST=0.9924;RSQ=0.7338;ERATE=0.0010;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 62810230 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.818;LDAF=0.0123;AVGPOST=0.9963;RSQ=0.8674;ERATE=0.0011;THETA=0.0045;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 62810269 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62810320 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5655;ERATE=0.0004;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62810407 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8879;ERATE=0.0003;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62810578 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62810763 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0098;AVGPOST=0.9988;RSQ=0.9551;ERATE=0.0003;THETA=0.0008;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62810779 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0837;AVGPOST=0.9979;RSQ=0.9884;ERATE=0.0004;THETA=0.0061;AC=182;AN=2184 GT:DS:GL:BD 0.08333334 0 1 62810941 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5817;ERATE=0.0004;THETA=0.0079;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62811113 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.662;LDAF=0.0019;AVGPOST=0.9978;RSQ=0.4981;ERATE=0.0007;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62811164 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.915;LDAF=0.0128;AVGPOST=0.9936;RSQ=0.7795;ERATE=0.0005;THETA=0.0097;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62811206 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0107;AVGPOST=0.9926;RSQ=0.7135;ERATE=0.0010;THETA=0.0024;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62811225 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.631;LDAF=0.0043;AVGPOST=0.9957;RSQ=0.5827;ERATE=0.0009;THETA=0.0024;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62811238 . C CA 1266 PASS INDEL;BAVGPOST=0.562;BRSQ=0.051;LDAF=0.7696;AVGPOST=0.6939;RSQ=0.2779;ERATE=0.0117;THETA=0.0084;AC=1933;AN=2184 GT:DS:GL:BD 0.88507324 1 1 62811365 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0087;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62811504 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0064;AVGPOST=0.9981;RSQ=0.8761;ERATE=0.0004;THETA=0.0114;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62811540 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0004;THETA=0.0068;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62811544 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0018;AVGPOST=0.9997;RSQ=0.9344;ERATE=0.0003;THETA=0.0097;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62811561 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0052;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62811598 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0088;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62811748 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.960;LDAF=0.2130;AVGPOST=0.9809;RSQ=0.9604;ERATE=0.0013;THETA=0.0013;AC=458;AN=2184 GT:DS:GL:BD 0.20970696 0 1 62811955 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6386;ERATE=0.0003;THETA=0.0043;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62812076 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0070;AVGPOST=0.9989;RSQ=0.9344;ERATE=0.0004;THETA=0.0059;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62812097 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.903;LDAF=0.0159;AVGPOST=0.9956;RSQ=0.8847;ERATE=0.0006;THETA=0.0224;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 62812145 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.949;LDAF=0.0183;AVGPOST=0.9953;RSQ=0.9094;ERATE=0.0012;THETA=0.0057;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 62812190 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.6884;ERATE=0.0009;THETA=0.0073;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62812191 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0043;AVGPOST=0.9986;RSQ=0.8872;ERATE=0.0005;THETA=0.0014;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62812306 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7117;ERATE=0.0004;THETA=0.0101;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62812329 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0095;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62812361 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0001;AVGPOST=0.9998;RSQ=0.0899;ERATE=0.0003;THETA=0.0090;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62812419 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0053;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62812475 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0003;THETA=0.0049;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62812718 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0114;AVGPOST=0.9981;RSQ=0.9419;ERATE=0.0003;THETA=0.0214;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 62813055 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.965;LDAF=0.0480;AVGPOST=0.9950;RSQ=0.9620;ERATE=0.0004;THETA=0.0012;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 62813074 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.974;LDAF=0.1445;AVGPOST=0.9912;RSQ=0.9735;ERATE=0.0004;THETA=0.0016;AC=311;AN=2184 GT:DS:GL:BD 0.14239927 0 1 62813075 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.985;LDAF=0.1092;AVGPOST=0.9933;RSQ=0.9813;ERATE=0.0004;THETA=0.0017;AC=240;AN=2184 GT:DS:GL:BD 0.10989011 0 1 62813092 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5869;ERATE=0.0004;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62813122 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62813141 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.392;LDAF=0.0019;AVGPOST=0.9972;RSQ=0.4431;ERATE=0.0006;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62813146 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.746;LDAF=0.0027;AVGPOST=0.9979;RSQ=0.6657;ERATE=0.0004;THETA=0.0022;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62813180 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6107;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62813231 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7425;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62813304 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0027;AVGPOST=0.9987;RSQ=0.7827;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62813318 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62813326 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.660;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62813367 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62813420 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0060;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62813421 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.850;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8865;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62813433 . T TTTC 695 PASS INDEL;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0028;AVGPOST=0.9996;RSQ=0.9398;ERATE=0.0003;THETA=0.0055;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62813795 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9647;ERATE=0.0003;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62813806 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.0529;AVGPOST=0.9990;RSQ=0.9937;ERATE=0.0003;THETA=0.0011;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 62813822 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0019;AVGPOST=0.9985;RSQ=0.6813;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62813884 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.868;LDAF=0.0052;AVGPOST=0.9984;RSQ=0.8705;ERATE=0.0007;THETA=0.0012;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62813935 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.888;LDAF=0.0539;AVGPOST=0.9936;RSQ=0.9556;ERATE=0.0004;THETA=0.0015;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 62813946 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.588;LDAF=0.0017;AVGPOST=0.9973;RSQ=0.3240;ERATE=0.0008;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62814220 rs78342124 TG T 6200 PASS INDEL;BAVGPOST=0.993;BRSQ=0.909;LDAF=0.0351;AVGPOST=0.9950;RSQ=0.9446;ERATE=0.0004;THETA=0.0007;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 62814387 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.2264;AVGPOST=0.9941;RSQ=0.9887;ERATE=0.0005;THETA=0.0005;AC=490;AN=2184 GT:DS:GL:BD 0.22435898 0 1 62814415 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62814417 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6913;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62814425 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62814487 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0263;AVGPOST=0.9983;RSQ=0.9755;ERATE=0.0003;THETA=0.0005;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 62814488 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8579;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62814489 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7496;ERATE=0.0004;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62814590 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5412;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62814655 rs111571000 C CAGAT 48007 PASS INDEL;BAVGPOST=0.980;BRSQ=0.961;LDAF=0.3008;AVGPOST=0.9873;RSQ=0.9803;ERATE=0.0005;THETA=0.0003;AC=655;AN=2184 GT:DS:GL:BD 0.29990843 0 1 62814658 . A ATAGG 23063 PASS INDEL;BAVGPOST=0.969;BRSQ=0.936;LDAF=0.2889;AVGPOST=0.9550;RSQ=0.9248;ERATE=0.0100;THETA=0.0014;AC=635;AN=2184 GT:DS:GL:BD 0.29075092 0 1 62814691 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0171;AVGPOST=0.9995;RSQ=0.9877;ERATE=0.0004;THETA=0.0012;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 62814719 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.816;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.6891;ERATE=0.0008;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62814766 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.926;LDAF=0.0107;AVGPOST=0.9975;RSQ=0.9128;ERATE=0.0003;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62814858 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.875;LDAF=0.0079;AVGPOST=0.9968;RSQ=0.8268;ERATE=0.0003;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62814935 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0172;AVGPOST=0.9980;RSQ=0.9525;ERATE=0.0006;THETA=0.0011;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 62815039 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0030;AVGPOST=0.9977;RSQ=0.6827;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62815109 . G GA 452 PASS INDEL;BAVGPOST=0.846;BRSQ=0.236;LDAF=0.1163;AVGPOST=0.8620;RSQ=0.4933;ERATE=0.0078;THETA=0.0006;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 62815122 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.539;LDAF=0.0544;AVGPOST=0.9340;RSQ=0.4874;ERATE=0.0070;THETA=0.0012;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 62815250 . GA G 213 PASS INDEL;BAVGPOST=0.792;BRSQ=0.142;LDAF=0.1361;AVGPOST=0.8387;RSQ=0.4455;ERATE=0.0073;THETA=0.0007;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 62815263 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.903;BRSQ=0.344;LDAF=0.1038;AVGPOST=0.8867;RSQ=0.5451;ERATE=0.0089;THETA=0.0010;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 62815389 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0171;AVGPOST=0.9996;RSQ=0.9913;ERATE=0.0003;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 62815406 . CA C 6568 PASS INDEL;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0536;AVGPOST=0.9972;RSQ=0.9810;ERATE=0.0007;THETA=0.0005;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 62815577 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0547;AVGPOST=0.9985;RSQ=0.9899;ERATE=0.0004;THETA=0.0009;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 62815608 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62815684 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0039;AVGPOST=0.9989;RSQ=0.8719;ERATE=0.0004;THETA=0.0029;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62815821 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0064;AVGPOST=0.9988;RSQ=0.9220;ERATE=0.0004;THETA=0.0016;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62815893 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7773;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62815967 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5827;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62816022 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6031;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62816105 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8194;ERATE=0.0003;THETA=0.0051;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62816121 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0045;AVGPOST=0.9993;RSQ=0.9414;ERATE=0.0007;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62816187 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0173;AVGPOST=0.9995;RSQ=0.9894;ERATE=0.0003;THETA=0.0007;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62816191 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6314;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62816228 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62816392 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.933;LDAF=0.0156;AVGPOST=0.9980;RSQ=0.9484;ERATE=0.0003;THETA=0.0008;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62816442 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7882;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62816450 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0216;AVGPOST=0.9995;RSQ=0.9906;ERATE=0.0003;THETA=0.0028;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 62816476 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.989;LDAF=0.3152;AVGPOST=0.9919;RSQ=0.9862;ERATE=0.0013;THETA=0.0009;AC=688;AN=2184 GT:DS:GL:BD 0.31501833 0 1 62816540 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7921;ERATE=0.0005;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62816578 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5345;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62816582 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.848;LDAF=0.0088;AVGPOST=0.9970;RSQ=0.8543;ERATE=0.0005;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62816620 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0529;AVGPOST=0.9974;RSQ=0.9830;ERATE=0.0005;THETA=0.0004;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 62816646 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.505;LDAF=0.0092;AVGPOST=0.9862;RSQ=0.4208;ERATE=0.0017;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62816847 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.536;LDAF=0.0035;AVGPOST=0.9969;RSQ=0.5933;ERATE=0.0006;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62816855 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.929;BRSQ=0.824;LDAF=0.2051;AVGPOST=0.9165;RSQ=0.8198;ERATE=0.0006;THETA=0.0006;AC=409;AN=2184 GT:DS:GL:BD 0.18727106 0 1 62816858 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.899;LDAF=0.2428;AVGPOST=0.9321;RSQ=0.8586;ERATE=0.0143;THETA=0.0035;AC=516;AN=2184 GT:DS:GL:BD 0.23626374 0 1 62816868 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.870;LDAF=0.0159;AVGPOST=0.9915;RSQ=0.7844;ERATE=0.0023;THETA=0.0008;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62816894 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.868;LDAF=0.0537;AVGPOST=0.9780;RSQ=0.8528;ERATE=0.0052;THETA=0.0009;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 62816914 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.569;LDAF=0.0083;AVGPOST=0.9927;RSQ=0.6256;ERATE=0.0007;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62817145 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.733;LDAF=0.0121;AVGPOST=0.9922;RSQ=0.7154;ERATE=0.0007;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62817403 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.8016;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62817410 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.789;LDAF=0.0054;AVGPOST=0.9972;RSQ=0.7690;ERATE=0.0007;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62817414 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4706;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62817466 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0005;AVGPOST=0.9989;RSQ=0.2569;ERATE=0.0004;THETA=0.0016;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62817552 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.734;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0066;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62817598 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0021;AVGPOST=0.9989;RSQ=0.8202;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62817756 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0018;AVGPOST=0.9975;RSQ=0.4328;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62817768 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0352;AVGPOST=0.9985;RSQ=0.9849;ERATE=0.0003;THETA=0.0005;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 62817794 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0177;AVGPOST=0.9990;RSQ=0.9764;ERATE=0.0004;THETA=0.0011;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62817865 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.728;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.4735;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62817879 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0172;AVGPOST=0.9949;RSQ=0.8971;ERATE=0.0004;THETA=0.0007;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62817882 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.781;LDAF=0.0049;AVGPOST=0.9983;RSQ=0.8625;ERATE=0.0004;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62817954 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8912;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62818125 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8476;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62818133 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0244;AVGPOST=0.9992;RSQ=0.9861;ERATE=0.0004;THETA=0.0008;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 62818142 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0038;AVGPOST=0.9984;RSQ=0.8250;ERATE=0.0012;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62818199 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.0521;AVGPOST=0.9970;RSQ=0.9814;ERATE=0.0005;THETA=0.0006;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 62818217 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3623;AVGPOST=0.9963;RSQ=0.9943;ERATE=0.0004;THETA=0.0006;AC=791;AN=2184 GT:DS:GL:BD 0.36217949 0 1 62818379 rs113468960 C CT 2038 PASS INDEL;BAVGPOST=0.950;BRSQ=0.643;LDAF=0.0896;AVGPOST=0.9195;RSQ=0.5847;ERATE=0.0252;THETA=0.0005;AC=135;AN=2184 GT:DS:GL:BD 0.06181319 0 1 62818469 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62818514 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6293;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62818621 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0177;AVGPOST=0.9980;RSQ=0.9602;ERATE=0.0004;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62818688 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.729;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6745;ERATE=0.0006;THETA=0.0044;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62818709 . G GA 28 PASS INDEL;BAVGPOST=0.997;BRSQ=0.557;LDAF=0.0075;AVGPOST=0.9896;RSQ=0.4392;ERATE=0.0027;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62818739 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0170;AVGPOST=0.9984;RSQ=0.9691;ERATE=0.0004;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62818765 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62818771 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62818806 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62819039 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7855;ERATE=0.0005;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62819067 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.979;LDAF=0.0988;AVGPOST=0.9952;RSQ=0.9800;ERATE=0.0004;THETA=0.0011;AC=216;AN=2184 GT:DS:GL:BD 0.09890110 0 1 62819099 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.0381;AVGPOST=0.9985;RSQ=0.9861;ERATE=0.0003;THETA=0.0004;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 62819113 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62819167 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6451;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62819235 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.787;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7381;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62819242 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9763;ERATE=0.0003;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62819346 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.0460;AVGPOST=0.9972;RSQ=0.9773;ERATE=0.0014;THETA=0.0004;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 62819373 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0148;AVGPOST=0.9984;RSQ=0.9656;ERATE=0.0004;THETA=0.0041;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 62819380 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7891;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62819456 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.917;LDAF=0.0170;AVGPOST=0.9976;RSQ=0.9357;ERATE=0.0004;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62819575 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.765;LDAF=0.0061;AVGPOST=0.9965;RSQ=0.7970;ERATE=0.0004;THETA=0.0034;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62819608 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62819617 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.953;BRSQ=0.887;LDAF=0.7819;AVGPOST=0.9487;RSQ=0.9005;ERATE=0.0023;THETA=0.0005;AC=1722;AN=2184 GT:DS:GL:BD 0.78846157 1 1 62819647 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8483;ERATE=0.0005;THETA=0.0066;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62819760 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8519;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62819770 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0286;AVGPOST=0.9974;RSQ=0.9685;ERATE=0.0007;THETA=0.0004;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 62820001 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3260;AVGPOST=0.9952;RSQ=0.9920;ERATE=0.0005;THETA=0.0013;AC=710;AN=2184 GT:DS:GL:BD 0.32509157 0 1 62820020 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0685;AVGPOST=0.9975;RSQ=0.9863;ERATE=0.0003;THETA=0.0004;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 62820089 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62820372 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.657;LDAF=0.0021;AVGPOST=0.9967;RSQ=0.3818;ERATE=0.0008;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62820376 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.735;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6804;ERATE=0.0005;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62820388 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.973;LDAF=0.3106;AVGPOST=0.9787;RSQ=0.9635;ERATE=0.0056;THETA=0.0024;AC=681;AN=2184 GT:DS:GL:BD 0.31181318 0 1 62820446 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0034;AVGPOST=0.9987;RSQ=0.8320;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62820513 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5134;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62820526 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.943;LDAF=0.0763;AVGPOST=0.9931;RSQ=0.9631;ERATE=0.0004;THETA=0.0019;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 62820539 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6287;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62820546 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6404;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62820552 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0041;AVGPOST=0.9984;RSQ=0.8448;ERATE=0.0004;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62820561 rs71740835 C CTT 279 PASS INDEL;BAVGPOST=0.769;BRSQ=0.108;LDAF=0.1811;AVGPOST=0.7305;RSQ=0.2382;ERATE=0.0199;THETA=0.0006;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 62820725 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.710;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5149;ERATE=0.0004;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62820789 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5682;ERATE=0.0004;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62820860 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62820861 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0340;AVGPOST=0.9984;RSQ=0.9823;ERATE=0.0006;THETA=0.0007;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 62820864 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.601;LDAF=0.0016;AVGPOST=0.9982;RSQ=0.5527;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62820873 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.6848;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62820923 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5574;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62821018 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0057;AVGPOST=0.9990;RSQ=0.9225;ERATE=0.0004;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62821274 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0119;AVGPOST=0.9987;RSQ=0.9614;ERATE=0.0003;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 62821413 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62821575 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0146;AVGPOST=0.9991;RSQ=0.9827;ERATE=0.0003;THETA=0.0007;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 62821681 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.722;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5018;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62821828 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5086;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62821871 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0340;AVGPOST=0.9984;RSQ=0.9829;ERATE=0.0004;THETA=0.0055;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 62821900 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.520;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.3372;ERATE=0.0008;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62822115 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62822126 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.982;LDAF=0.1058;AVGPOST=0.9952;RSQ=0.9805;ERATE=0.0004;THETA=0.0011;AC=228;AN=2184 GT:DS:GL:BD 0.10439561 0 1 62822149 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7200;ERATE=0.0003;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62822238 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9453;ERATE=0.0005;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62822239 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0057;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62822240 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0057;AVGPOST=0.9987;RSQ=0.9145;ERATE=0.0003;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62822432 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6505;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62822456 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.717;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4632;ERATE=0.0004;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62822489 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0104;AVGPOST=0.9997;RSQ=0.9894;ERATE=0.0003;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 62822559 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9385;ERATE=0.0003;THETA=0.0021;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62822640 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0152;AVGPOST=0.9985;RSQ=0.9533;ERATE=0.0005;THETA=0.0010;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 62822643 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6546;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62822698 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.870;LDAF=0.0089;AVGPOST=0.9958;RSQ=0.8216;ERATE=0.0024;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62822813 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0171;AVGPOST=0.9995;RSQ=0.9860;ERATE=0.0004;THETA=0.0007;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 62822856 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.693;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5697;ERATE=0.0004;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62822906 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.939;LDAF=0.0077;AVGPOST=0.9990;RSQ=0.9456;ERATE=0.0003;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62822914 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.3534;AVGPOST=0.9964;RSQ=0.9939;ERATE=0.0005;THETA=0.0025;AC=768;AN=2184 GT:DS:GL:BD 0.35164836 0 1 62822921 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0060;AVGPOST=0.9984;RSQ=0.8836;ERATE=0.0006;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62822950 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0182;AVGPOST=0.9995;RSQ=0.9902;ERATE=0.0004;THETA=0.0010;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 62823113 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0155;AVGPOST=0.9997;RSQ=0.9918;ERATE=0.0003;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62823160 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3865;AVGPOST=0.9962;RSQ=0.9946;ERATE=0.0005;THETA=0.0056;AC=841;AN=2184 GT:DS:GL:BD 0.38507327 0 1 62823378 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0048;AVGPOST=0.9987;RSQ=0.8880;ERATE=0.0004;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62823432 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0030;AVGPOST=0.9979;RSQ=0.7326;ERATE=0.0004;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62823444 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0149;AVGPOST=0.9973;RSQ=0.9483;ERATE=0.0006;THETA=0.0015;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 62823548 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62823603 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0357;AVGPOST=0.9989;RSQ=0.9875;ERATE=0.0004;THETA=0.0012;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 62823775 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5701;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62823788 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7465;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62823873 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6723;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62823908 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0072;AVGPOST=0.9985;RSQ=0.9330;ERATE=0.0004;THETA=0.0011;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62823933 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0072;AVGPOST=0.9986;RSQ=0.9367;ERATE=0.0003;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62824174 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.731;LDAF=0.0093;AVGPOST=0.9947;RSQ=0.7629;ERATE=0.0013;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62824188 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62824194 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.950;LDAF=0.0349;AVGPOST=0.9968;RSQ=0.9662;ERATE=0.0004;THETA=0.0005;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 62824485 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.1239;AVGPOST=0.9978;RSQ=0.9927;ERATE=0.0004;THETA=0.0004;AC=270;AN=2184 GT:DS:GL:BD 0.12362637 0 1 62824656 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9213;ERATE=0.0004;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62824790 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3611;AVGPOST=0.9967;RSQ=0.9947;ERATE=0.0003;THETA=0.0013;AC=786;AN=2184 GT:DS:GL:BD 0.35989010 0 1 62824941 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.1238;AVGPOST=0.9974;RSQ=0.9910;ERATE=0.0004;THETA=0.0008;AC=270;AN=2184 GT:DS:GL:BD 0.12362637 0 1 62825080 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.744;LDAF=0.0040;AVGPOST=0.9979;RSQ=0.7929;ERATE=0.0005;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62825104 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.830;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9194;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62825151 . A ATTT 17461 PASS INDEL;BAVGPOST=0.921;BRSQ=0.801;LDAF=0.2774;AVGPOST=0.9041;RSQ=0.8031;ERATE=0.0313;THETA=0.0016;AC=579;AN=2184 GT:DS:GL:BD 0.26510990 0 1 62825159 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.852;LDAF=0.0230;AVGPOST=0.9936;RSQ=0.8918;ERATE=0.0008;THETA=0.0006;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 62825178 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.623;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4263;ERATE=0.0004;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62825244 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0336;AVGPOST=0.9961;RSQ=0.9567;ERATE=0.0010;THETA=0.0014;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 62825260 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.689;LDAF=0.0021;AVGPOST=0.9990;RSQ=0.7953;ERATE=0.0005;THETA=0.0018;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62825325 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0451;AVGPOST=0.9985;RSQ=0.9863;ERATE=0.0005;THETA=0.0020;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 62825397 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0422;AVGPOST=0.9991;RSQ=0.9913;ERATE=0.0004;THETA=0.0013;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 62825429 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7683;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62825484 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.564;LDAF=0.0023;AVGPOST=0.9977;RSQ=0.6316;ERATE=0.0005;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62825517 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6812;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62825673 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0449;AVGPOST=0.9984;RSQ=0.9854;ERATE=0.0004;THETA=0.0009;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 62825743 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.755;LDAF=0.0032;AVGPOST=0.9970;RSQ=0.6535;ERATE=0.0004;THETA=0.0018;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62825806 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0157;AVGPOST=0.9995;RSQ=0.9856;ERATE=0.0003;THETA=0.0033;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62825813 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.978;LDAF=0.0451;AVGPOST=0.9956;RSQ=0.9626;ERATE=0.0007;THETA=0.0017;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 62825830 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.590;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4986;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62825847 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.971;LDAF=0.3900;AVGPOST=0.9634;RSQ=0.9471;ERATE=0.0024;THETA=0.0046;AC=852;AN=2184 GT:DS:GL:BD 0.39010990 0 1 62825857 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.698;LDAF=0.0030;AVGPOST=0.9951;RSQ=0.3838;ERATE=0.0005;THETA=0.0048;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62825948 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.515;LDAF=0.0096;AVGPOST=0.9843;RSQ=0.3442;ERATE=0.0010;THETA=0.0144;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62825990 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.279;LDAF=0.0047;AVGPOST=0.9918;RSQ=0.2317;ERATE=0.0012;THETA=0.0070;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62825996 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.933;BRSQ=0.887;LDAF=0.3521;AVGPOST=0.9164;RSQ=0.8752;ERATE=0.0013;THETA=0.0009;AC=768;AN=2184 GT:DS:GL:BD 0.35164836 0 1 62826000 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.933;BRSQ=0.887;LDAF=0.3541;AVGPOST=0.9157;RSQ=0.8758;ERATE=0.0012;THETA=0.0069;AC=775;AN=2184 GT:DS:GL:BD 0.35485348 0 1 62826112 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.894;LDAF=0.0259;AVGPOST=0.9701;RSQ=0.5277;ERATE=0.0027;THETA=0.0011;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62826278 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.645;LDAF=0.0188;AVGPOST=0.9854;RSQ=0.6808;ERATE=0.0004;THETA=0.0062;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 62826428 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.975;LDAF=0.0471;AVGPOST=0.9905;RSQ=0.9293;ERATE=0.0005;THETA=0.0048;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 62826565 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.951;BRSQ=0.878;LDAF=0.2048;AVGPOST=0.9371;RSQ=0.8587;ERATE=0.0020;THETA=0.0162;AC=436;AN=2184 GT:DS:GL:BD 0.19963370 0 1 62826589 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.646;LDAF=0.0023;AVGPOST=0.9971;RSQ=0.4201;ERATE=0.0007;THETA=0.0153;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62826606 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.534;LDAF=0.0078;AVGPOST=0.9911;RSQ=0.4859;ERATE=0.0017;THETA=0.0100;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62826652 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.568;LDAF=0.0282;AVGPOST=0.9778;RSQ=0.6912;ERATE=0.0009;THETA=0.0102;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 62826706 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.463;LDAF=0.0033;AVGPOST=0.9953;RSQ=0.3668;ERATE=0.0009;THETA=0.0186;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62826723 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.862;LDAF=0.0139;AVGPOST=0.9973;RSQ=0.9221;ERATE=0.0005;THETA=0.0083;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62826727 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.340;LDAF=0.0092;AVGPOST=0.9859;RSQ=0.3332;ERATE=0.0020;THETA=0.0063;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62826816 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0016;AVGPOST=0.9983;RSQ=0.5360;ERATE=0.0003;THETA=0.0040;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62826836 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0139;AVGPOST=0.9991;RSQ=0.9751;ERATE=0.0003;THETA=0.0152;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62826888 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7349;ERATE=0.0008;THETA=0.0077;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62826925 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0030;AVGPOST=0.9992;RSQ=0.8809;ERATE=0.0003;THETA=0.0103;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62827566 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0208;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62827568 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0125;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62827772 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0105;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62827817 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9359;ERATE=0.0003;THETA=0.0172;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62827967 . GC G 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4334;ERATE=0.0006;THETA=0.0067;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62828038 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.712;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0082;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62828093 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0112;AVGPOST=0.9989;RSQ=0.9548;ERATE=0.0003;THETA=0.0369;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62828280 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8687;ERATE=0.0004;THETA=0.0132;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62828308 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8580;ERATE=0.0008;THETA=0.0086;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62828464 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6377;ERATE=0.0003;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62828468 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.886;LDAF=0.0063;AVGPOST=0.9980;RSQ=0.8536;ERATE=0.0012;THETA=0.0144;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62828469 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0082;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62828527 rs113012795 A AT 950 PASS INDEL;BAVGPOST=0.995;BRSQ=0.788;LDAF=0.0130;AVGPOST=0.9912;RSQ=0.7269;ERATE=0.0032;THETA=0.0261;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62828538 . C CT 10 PASS INDEL;BAVGPOST=0.997;BRSQ=0.487;LDAF=0.0037;AVGPOST=0.9958;RSQ=0.5127;ERATE=0.0017;THETA=0.0031;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62828600 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7864;ERATE=0.0008;THETA=0.0175;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62828614 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7023;ERATE=0.0005;THETA=0.0110;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62828719 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7822;ERATE=0.0003;THETA=0.0066;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62828741 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.913;LDAF=0.0156;AVGPOST=0.9971;RSQ=0.9220;ERATE=0.0005;THETA=0.0080;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62828791 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.912;LDAF=0.0295;AVGPOST=0.9941;RSQ=0.9286;ERATE=0.0021;THETA=0.0117;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 62828808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0207;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62828885 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0229;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62828887 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6599;ERATE=0.0003;THETA=0.0082;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62828902 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0136;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62829001 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6746;ERATE=0.0004;THETA=0.0120;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62829022 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.948;LDAF=0.0198;AVGPOST=0.9966;RSQ=0.9335;ERATE=0.0004;THETA=0.0327;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 62829036 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0172;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62829076 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.933;BRSQ=0.877;LDAF=0.3321;AVGPOST=0.9349;RSQ=0.8956;ERATE=0.0317;THETA=0.0019;AC=706;AN=2184 GT:DS:GL:BD 0.32326007 0 1 62829166 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0204;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62829282 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.564;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4619;ERATE=0.0005;THETA=0.0262;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62829331 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.689;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5400;ERATE=0.0005;THETA=0.0234;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62829347 . C CA 407 PASS INDEL;BAVGPOST=0.998;BRSQ=0.822;LDAF=0.0046;AVGPOST=0.9981;RSQ=0.8212;ERATE=0.0006;THETA=0.0197;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62829532 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.946;LDAF=0.0201;AVGPOST=0.9973;RSQ=0.9478;ERATE=0.0004;THETA=0.0105;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 62829533 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.947;LDAF=0.0197;AVGPOST=0.9981;RSQ=0.9636;ERATE=0.0003;THETA=0.0150;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 62829853 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.976;LDAF=0.0303;AVGPOST=0.9950;RSQ=0.9391;ERATE=0.0004;THETA=0.0207;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 62829883 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.780;LDAF=0.0098;AVGPOST=0.9930;RSQ=0.6963;ERATE=0.0006;THETA=0.0080;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62829886 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.531;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7251;ERATE=0.0004;THETA=0.0127;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62829912 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0033;AVGPOST=0.9982;RSQ=0.7342;ERATE=0.0007;THETA=0.0119;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62829968 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.650;LDAF=0.0065;AVGPOST=0.9956;RSQ=0.6921;ERATE=0.0006;THETA=0.0124;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62829986 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0031;AVGPOST=0.9975;RSQ=0.6779;ERATE=0.0003;THETA=0.0157;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62830018 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7892;ERATE=0.0003;THETA=0.0132;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62830193 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5611;ERATE=0.0004;THETA=0.0178;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62830253 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0098;AVGPOST=0.9984;RSQ=0.9328;ERATE=0.0005;THETA=0.0153;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62830303 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8631;ERATE=0.0004;THETA=0.0094;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62830328 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.722;LDAF=0.0035;AVGPOST=0.9981;RSQ=0.7714;ERATE=0.0004;THETA=0.0201;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62830425 . CATTTT C 274 PASS INDEL;BAVGPOST=0.999;BRSQ=0.619;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.3733;ERATE=0.0008;THETA=0.0116;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62830762 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.910;LDAF=0.0060;AVGPOST=0.9987;RSQ=0.9128;ERATE=0.0003;THETA=0.0098;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62830923 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0060;AVGPOST=0.9980;RSQ=0.8532;ERATE=0.0005;THETA=0.0037;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62830965 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.571;LDAF=0.0039;AVGPOST=0.9970;RSQ=0.7121;ERATE=0.0003;THETA=0.0125;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62831062 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.922;LDAF=0.1821;AVGPOST=0.9420;RSQ=0.8510;ERATE=0.0007;THETA=0.0046;AC=373;AN=2184 GT:DS:GL:BD 0.17078754 0 1 62831112 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0033;AVGPOST=0.9977;RSQ=0.6932;ERATE=0.0006;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62831385 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0367;AVGPOST=0.9915;RSQ=0.9162;ERATE=0.0005;THETA=0.0029;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 62831407 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0035;AVGPOST=0.9982;RSQ=0.7752;ERATE=0.0004;THETA=0.0040;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62831546 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7163;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62831698 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6082;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62831840 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0023;AVGPOST=0.9997;RSQ=0.9439;ERATE=0.0003;THETA=0.0032;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62831883 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0037;AVGPOST=0.9971;RSQ=0.6636;ERATE=0.0006;THETA=0.0028;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62831946 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0034;AVGPOST=0.9984;RSQ=0.8047;ERATE=0.0005;THETA=0.0027;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62832073 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.6101;ERATE=0.0003;THETA=0.0069;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62832074 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.787;LDAF=0.0064;AVGPOST=0.9963;RSQ=0.7561;ERATE=0.0008;THETA=0.0065;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62832482 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0003;THETA=0.0042;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62832547 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7086;ERATE=0.0013;THETA=0.0032;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62832610 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0007;AVGPOST=0.9989;RSQ=0.3555;ERATE=0.0005;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62832626 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9614;ERATE=0.0004;THETA=0.0057;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62832731 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.941;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9583;ERATE=0.0003;THETA=0.0012;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62832740 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62832761 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6994;ERATE=0.0003;THETA=0.0049;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62832767 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.730;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6910;ERATE=0.0003;THETA=0.0065;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62832768 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.7869;ERATE=0.0004;THETA=0.0061;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62832791 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62832900 . CA C 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0004;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62832913 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8538;ERATE=0.0005;THETA=0.0020;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62832937 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0301;AVGPOST=0.9977;RSQ=0.9686;ERATE=0.0004;THETA=0.0029;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 62832959 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0386;AVGPOST=0.9983;RSQ=0.9839;ERATE=0.0003;THETA=0.0029;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 62832984 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5717;ERATE=0.0003;THETA=0.0053;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62833122 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8627;ERATE=0.0006;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62833123 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0004;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62833134 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.834;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0004;THETA=0.0030;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62833378 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8202;ERATE=0.0003;THETA=0.0111;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62833395 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0041;AVGPOST=0.9994;RSQ=0.9366;ERATE=0.0004;THETA=0.0045;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62833402 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.939;LDAF=0.0367;AVGPOST=0.9952;RSQ=0.9556;ERATE=0.0004;THETA=0.0011;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 62833424 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.879;LDAF=0.0195;AVGPOST=0.9954;RSQ=0.9148;ERATE=0.0003;THETA=0.0018;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 62833553 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.990;LDAF=0.6086;AVGPOST=0.9897;RSQ=0.9829;ERATE=0.0007;THETA=0.0006;AC=1330;AN=2184 GT:DS:GL:BD 0.60897434 1 1 62833570 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0018;AVGPOST=0.9996;RSQ=0.9151;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62833594 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0021;AVGPOST=0.9989;RSQ=0.7865;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62833661 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62833712 . CTGG C 602 PASS INDEL;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0036;AVGPOST=0.9974;RSQ=0.6985;ERATE=0.0009;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62833738 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.2249;AVGPOST=0.9963;RSQ=0.9919;ERATE=0.0004;THETA=0.0004;AC=492;AN=2184 GT:DS:GL:BD 0.22527473 0 1 62833817 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.6862;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62833839 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6995;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62833919 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0058;AVGPOST=0.9992;RSQ=0.9506;ERATE=0.0004;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62833985 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0061;AVGPOST=0.9977;RSQ=0.8474;ERATE=0.0004;THETA=0.0018;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62834029 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.2209;AVGPOST=0.9983;RSQ=0.9962;ERATE=0.0004;THETA=0.0005;AC=482;AN=2184 GT:DS:GL:BD 0.22069597 0 1 62834094 . C CT 12278 PASS INDEL;BAVGPOST=0.991;BRSQ=0.962;LDAF=0.0882;AVGPOST=0.9944;RSQ=0.9728;ERATE=0.0004;THETA=0.0003;AC=192;AN=2184 GT:DS:GL:BD 0.08791209 0 1 62834096 . T TC 1195 PASS INDEL;BAVGPOST=0.991;BRSQ=0.963;LDAF=0.0876;AVGPOST=0.9949;RSQ=0.9748;ERATE=0.0003;THETA=0.0004;AC=192;AN=2184 GT:DS:GL:BD 0.08791209 0 1 62834202 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0070;AVGPOST=0.9997;RSQ=0.9834;ERATE=0.0003;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62834203 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8596;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62834245 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0113;AVGPOST=0.9975;RSQ=0.9143;ERATE=0.0003;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62834294 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0057;AVGPOST=0.9996;RSQ=0.9697;ERATE=0.0004;THETA=0.0011;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62834316 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62834397 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62834398 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0079;AVGPOST=0.9978;RSQ=0.8906;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62834653 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62834699 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2266;AVGPOST=0.9985;RSQ=0.9974;ERATE=0.0003;THETA=0.0007;AC=494;AN=2184 GT:DS:GL:BD 0.22619048 0 1 62834743 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62834755 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0046;AVGPOST=0.9990;RSQ=0.9066;ERATE=0.0012;THETA=0.0001;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62834827 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62834831 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8178;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62834903 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7990;ERATE=0.0006;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62834948 . C CT 84 PASS INDEL;BAVGPOST=0.984;BRSQ=0.595;LDAF=0.0241;AVGPOST=0.9749;RSQ=0.5774;ERATE=0.0053;THETA=0.0002;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62834957 . T TC 487 PASS INDEL;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0046;AVGPOST=0.9975;RSQ=0.7783;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62834997 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0119;AVGPOST=1.0000;RSQ=0.9983;ERATE=0.0003;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62835207 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.628;LDAF=0.0019;AVGPOST=0.9978;RSQ=0.5554;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62835216 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0389;AVGPOST=0.9987;RSQ=0.9862;ERATE=0.0003;THETA=0.0005;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 62835290 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.949;LDAF=0.2466;AVGPOST=0.9861;RSQ=0.9701;ERATE=0.0010;THETA=0.0002;AC=544;AN=2184 GT:DS:GL:BD 0.24908425 0 1 62835414 . AATTT A 15 PASS INDEL;BAVGPOST=0.991;BRSQ=0.325;LDAF=0.0485;AVGPOST=0.9230;RSQ=0.3250;ERATE=0.0023;THETA=0.0006;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62835484 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.980;LDAF=0.1854;AVGPOST=0.9934;RSQ=0.9832;ERATE=0.0007;THETA=0.0007;AC=402;AN=2184 GT:DS:GL:BD 0.18406594 0 1 62835643 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.981;LDAF=0.2474;AVGPOST=0.9892;RSQ=0.9767;ERATE=0.0005;THETA=0.0003;AC=542;AN=2184 GT:DS:GL:BD 0.24816850 0 1 62835770 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62835779 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0123;AVGPOST=0.9991;RSQ=0.9720;ERATE=0.0004;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62835818 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1889;AVGPOST=0.9967;RSQ=0.9920;ERATE=0.0006;THETA=0.0005;AC=410;AN=2184 GT:DS:GL:BD 0.18772894 0 1 62835936 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0874;AVGPOST=0.9965;RSQ=0.9820;ERATE=0.0004;THETA=0.0004;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 62836102 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5335;ERATE=0.0006;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62836337 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0035;AVGPOST=0.9989;RSQ=0.8583;ERATE=0.0016;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62836383 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0046;AVGPOST=0.9991;RSQ=0.9077;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62836414 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.4930;AVGPOST=0.9940;RSQ=0.9906;ERATE=0.0009;THETA=0.0006;AC=1075;AN=2184 GT:DS:GL:BD 0.49221611 0 1 62836447 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0030;AVGPOST=0.9983;RSQ=0.7904;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62836845 . C CA 566 PASS INDEL;BAVGPOST=0.998;BRSQ=0.909;LDAF=0.0056;AVGPOST=0.9988;RSQ=0.8954;ERATE=0.0005;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62836901 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0334;AVGPOST=0.9998;RSQ=0.9968;ERATE=0.0003;THETA=0.0039;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 62836954 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1876;AVGPOST=0.9979;RSQ=0.9944;ERATE=0.0004;THETA=0.0002;AC=408;AN=2184 GT:DS:GL:BD 0.18681319 0 1 62836956 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0043;AVGPOST=0.9987;RSQ=0.8975;ERATE=0.0004;THETA=0.0014;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62836976 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.6065;AVGPOST=0.9973;RSQ=0.9953;ERATE=0.0006;THETA=0.0004;AC=1324;AN=2184 GT:DS:GL:BD 0.60622710 1 1 62837072 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8303;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62837106 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.598;LDAF=0.0093;AVGPOST=0.9892;RSQ=0.5410;ERATE=0.0029;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62837153 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0039;AVGPOST=0.9993;RSQ=0.9219;ERATE=0.0003;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62837352 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0054;AVGPOST=0.9995;RSQ=0.9533;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62837376 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1881;AVGPOST=0.9979;RSQ=0.9946;ERATE=0.0004;THETA=0.0002;AC=409;AN=2184 GT:DS:GL:BD 0.18727106 0 1 62837461 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0067;AVGPOST=0.9994;RSQ=0.9618;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62837466 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0093;AVGPOST=0.9985;RSQ=0.9416;ERATE=0.0004;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62837535 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.634;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4524;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62837538 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.653;LDAF=0.0026;AVGPOST=0.9965;RSQ=0.4542;ERATE=0.0009;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62837550 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0305;AVGPOST=0.9972;RSQ=0.9611;ERATE=0.0007;THETA=0.0003;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 62837671 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.663;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5766;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62837801 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9302;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62837805 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.8179;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62837953 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0333;AVGPOST=0.9994;RSQ=0.9920;ERATE=0.0003;THETA=0.0005;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 62838031 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9154;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62838065 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7418;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62838091 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7457;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62838157 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0042;AVGPOST=0.9993;RSQ=0.9249;ERATE=0.0005;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62838172 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7717;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62838390 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8431;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62838431 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0054;AVGPOST=0.9994;RSQ=0.9555;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62838443 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5771;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62838456 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9233;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62838479 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0063;AVGPOST=0.9978;RSQ=0.8477;ERATE=0.0004;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62838695 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.693;LDAF=0.0038;AVGPOST=0.9978;RSQ=0.7505;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62838811 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.742;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5938;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62838847 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7693;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62838953 . A AT 76 PASS INDEL;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5018;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62839097 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62839142 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0101;AVGPOST=0.9975;RSQ=0.8979;ERATE=0.0007;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62839202 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0039;AVGPOST=0.9985;RSQ=0.8547;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62839332 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0293;AVGPOST=0.9976;RSQ=0.9700;ERATE=0.0003;THETA=0.0005;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 62839538 rs111301007 T TA 1051 PASS INDEL;BAVGPOST=0.986;BRSQ=0.710;LDAF=0.0301;AVGPOST=0.9717;RSQ=0.6101;ERATE=0.0071;THETA=0.0004;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 62839551 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.981;LDAF=0.0904;AVGPOST=0.9970;RSQ=0.9847;ERATE=0.0005;THETA=0.0006;AC=197;AN=2184 GT:DS:GL:BD 0.09020147 0 1 62839567 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.994;LDAF=0.6100;AVGPOST=0.9942;RSQ=0.9902;ERATE=0.0009;THETA=0.0011;AC=1332;AN=2184 GT:DS:GL:BD 0.60989010 1 1 62839733 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0041;AVGPOST=0.9989;RSQ=0.8807;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62839734 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0043;AVGPOST=0.9987;RSQ=0.8614;ERATE=0.0005;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62839815 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0035;AVGPOST=0.9989;RSQ=0.8608;ERATE=0.0011;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62839911 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0065;AVGPOST=0.9995;RSQ=0.9697;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62839967 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0020;AVGPOST=0.9990;RSQ=0.7901;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62840103 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2544;AVGPOST=0.9941;RSQ=0.9878;ERATE=0.0005;THETA=0.0013;AC=553;AN=2184 GT:DS:GL:BD 0.25320512 0 1 62840199 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1830;AVGPOST=0.9964;RSQ=0.9900;ERATE=0.0007;THETA=0.0047;AC=397;AN=2184 GT:DS:GL:BD 0.18177655 0 1 62840369 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0021;AVGPOST=0.9977;RSQ=0.5525;ERATE=0.0004;THETA=0.0028;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62840499 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8413;ERATE=0.0005;THETA=0.0032;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62840786 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.986;LDAF=0.3123;AVGPOST=0.9912;RSQ=0.9834;ERATE=0.0006;THETA=0.0010;AC=681;AN=2184 GT:DS:GL:BD 0.31181318 0 1 62840811 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0059;AVGPOST=0.9992;RSQ=0.9435;ERATE=0.0004;THETA=0.0015;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62840817 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.977;LDAF=0.2575;AVGPOST=0.9888;RSQ=0.9765;ERATE=0.0009;THETA=0.0018;AC=562;AN=2184 GT:DS:GL:BD 0.25732601 0 1 62840852 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0161;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62840999 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.932;LDAF=0.0575;AVGPOST=0.9913;RSQ=0.9365;ERATE=0.0006;THETA=0.0104;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 62841001 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.587;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5202;ERATE=0.0006;THETA=0.0127;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62841075 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0030;AVGPOST=0.9993;RSQ=0.8910;ERATE=0.0003;THETA=0.0019;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62841135 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0081;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62841212 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.679;LDAF=0.0022;AVGPOST=0.9970;RSQ=0.4698;ERATE=0.0005;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62841215 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.756;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7199;ERATE=0.0003;THETA=0.0121;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62841229 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0024;AVGPOST=0.9984;RSQ=0.7401;ERATE=0.0004;THETA=0.0099;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62841325 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9201;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62841333 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.932;LDAF=0.0233;AVGPOST=0.9957;RSQ=0.9344;ERATE=0.0027;THETA=0.0132;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 62841363 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0057;AVGPOST=0.9979;RSQ=0.8462;ERATE=0.0007;THETA=0.0086;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62841408 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.977;LDAF=0.0760;AVGPOST=0.9937;RSQ=0.9656;ERATE=0.0006;THETA=0.0059;AC=161;AN=2184 GT:DS:GL:BD 0.07371795 0 1 62841432 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0003;THETA=0.0130;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62841776 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9183;ERATE=0.0003;THETA=0.0110;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62841817 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7025;ERATE=0.0005;THETA=0.0055;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62841849 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.856;LDAF=0.0025;AVGPOST=0.9977;RSQ=0.6283;ERATE=0.0010;THETA=0.0037;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62841902 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.969;LDAF=0.6137;AVGPOST=0.9660;RSQ=0.9449;ERATE=0.0019;THETA=0.0012;AC=1343;AN=2184 GT:DS:GL:BD 0.61492676 1 1 62842010 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0021;AVGPOST=0.9976;RSQ=0.5027;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62842015 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0100;AVGPOST=0.9972;RSQ=0.8956;ERATE=0.0003;THETA=0.0025;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62842078 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.702;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.6975;ERATE=0.0004;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62842105 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0083;AVGPOST=0.9990;RSQ=0.9545;ERATE=0.0004;THETA=0.0090;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62842205 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0408;AVGPOST=0.9977;RSQ=0.9794;ERATE=0.0004;THETA=0.0005;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 62842249 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.971;LDAF=0.3829;AVGPOST=0.9825;RSQ=0.9734;ERATE=0.0025;THETA=0.0021;AC=839;AN=2184 GT:DS:GL:BD 0.38415751 0 1 62842267 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.978;LDAF=0.3317;AVGPOST=0.9794;RSQ=0.9663;ERATE=0.0039;THETA=0.0006;AC=723;AN=2184 GT:DS:GL:BD 0.33104396 0 1 62842288 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62842327 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0047;AVGPOST=0.9996;RSQ=0.9588;ERATE=0.0003;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62842494 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62842626 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.613;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4989;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62842677 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.3179;AVGPOST=0.9910;RSQ=0.9853;ERATE=0.0007;THETA=0.0012;AC=691;AN=2184 GT:DS:GL:BD 0.31639194 0 1 62842766 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0161;AVGPOST=0.9979;RSQ=0.9478;ERATE=0.0004;THETA=0.0011;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62842811 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0053;AVGPOST=0.9981;RSQ=0.8756;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62842812 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8726;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62842827 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.756;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8136;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62842843 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62842952 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6594;ERATE=0.0004;THETA=0.0039;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62843020 . CAT C 166 PASS INDEL;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0017;AVGPOST=0.9977;RSQ=0.4847;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62843080 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9544;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62843192 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0053;AVGPOST=0.9991;RSQ=0.9409;ERATE=0.0006;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62843203 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0032;AVGPOST=0.9991;RSQ=0.9048;ERATE=0.0004;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62843294 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9660;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62843453 . G GA 110 PASS INDEL;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5922;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62843506 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7568;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62843518 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0095;AVGPOST=0.9993;RSQ=0.9679;ERATE=0.0004;THETA=0.0051;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62843560 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7012;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62843575 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5675;AVGPOST=0.9952;RSQ=0.9931;ERATE=0.0005;THETA=0.0006;AC=1242;AN=2184 GT:DS:GL:BD 0.56868130 1 1 62843580 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0064;AVGPOST=0.9990;RSQ=0.9465;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62843609 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0024;AVGPOST=0.9986;RSQ=0.7304;ERATE=0.0007;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62843650 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9717;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62843671 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6616;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62844228 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.824;LDAF=0.0025;AVGPOST=0.9991;RSQ=0.8447;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62844258 . ACT A 86 PASS INDEL;BAVGPOST=0.996;BRSQ=0.859;LDAF=0.0156;AVGPOST=0.9995;RSQ=0.9842;ERATE=0.0004;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62844259 . CTCTT C 2491 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0159;AVGPOST=0.9992;RSQ=0.9749;ERATE=0.0004;THETA=0.0017;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62844277 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7442;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62844371 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6752;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62844386 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0090;AVGPOST=0.9974;RSQ=0.8830;ERATE=0.0005;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62844455 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0049;AVGPOST=0.9994;RSQ=0.9414;ERATE=0.0004;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62844505 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62844586 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5882;AVGPOST=0.9950;RSQ=0.9922;ERATE=0.0006;THETA=0.0004;AC=1284;AN=2184 GT:DS:GL:BD 0.58791208 1 1 62844599 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0053;AVGPOST=0.9984;RSQ=0.8863;ERATE=0.0005;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62844627 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.749;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62844707 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.737;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4300;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62844724 . AT A 100 PASS INDEL;BAVGPOST=1.000;BRSQ=0.722;LDAF=0.0024;AVGPOST=0.9961;RSQ=0.3765;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62844761 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.5832;AVGPOST=0.9953;RSQ=0.9929;ERATE=0.0007;THETA=0.0006;AC=1273;AN=2184 GT:DS:GL:BD 0.58287543 1 1 62844918 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.6072;AVGPOST=0.9873;RSQ=0.9812;ERATE=0.0016;THETA=0.0004;AC=1327;AN=2184 GT:DS:GL:BD 0.60760075 1 1 62845027 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.831;LDAF=0.0056;AVGPOST=0.9976;RSQ=0.8402;ERATE=0.0005;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62845133 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0073;AVGPOST=0.9975;RSQ=0.8735;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62845308 . A AG 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7408;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62845419 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0038;AVGPOST=0.9969;RSQ=0.6515;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62845424 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0027;AVGPOST=0.9977;RSQ=0.6363;ERATE=0.0005;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62845447 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5114;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62845459 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.831;LDAF=0.0047;AVGPOST=0.9982;RSQ=0.8284;ERATE=0.0009;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62845660 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.710;LDAF=0.0036;AVGPOST=0.9977;RSQ=0.7566;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62845689 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9348;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62845747 . G GT 49 PASS INDEL;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4411;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62845958 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0044;AVGPOST=0.9977;RSQ=0.7991;ERATE=0.0005;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62845981 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6057;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62846198 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8827;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62846387 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.5954;AVGPOST=0.9732;RSQ=0.9580;ERATE=0.0040;THETA=0.0011;AC=1316;AN=2184 GT:DS:GL:BD 0.60256410 1 1 62846413 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.978;LDAF=0.0497;AVGPOST=0.9926;RSQ=0.9427;ERATE=0.0004;THETA=0.0011;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 62846460 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.5854;AVGPOST=0.9966;RSQ=0.9942;ERATE=0.0007;THETA=0.0003;AC=1280;AN=2184 GT:DS:GL:BD 0.58608061 1 1 62846589 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.855;BRSQ=0.752;LDAF=0.5124;AVGPOST=0.8392;RSQ=0.7598;ERATE=0.0102;THETA=0.0007;AC=1208;AN=2184 GT:DS:GL:BD 0.55311358 1 1 62846603 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.925;LDAF=0.0219;AVGPOST=0.9846;RSQ=0.7324;ERATE=0.0014;THETA=0.0015;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62846653 . T TC 1359 PASS INDEL;BAVGPOST=0.971;BRSQ=0.743;LDAF=0.0566;AVGPOST=0.9686;RSQ=0.8032;ERATE=0.0006;THETA=0.0003;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 62846654 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.743;LDAF=0.0547;AVGPOST=0.9702;RSQ=0.8125;ERATE=0.0006;THETA=0.0009;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 62846687 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.928;BRSQ=0.867;LDAF=0.5432;AVGPOST=0.8822;RSQ=0.8190;ERATE=0.0096;THETA=0.0005;AC=1255;AN=2184 GT:DS:GL:BD 0.57463372 1 1 62846746 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.940;LDAF=0.5757;AVGPOST=0.9183;RSQ=0.8737;ERATE=0.0044;THETA=0.0006;AC=1256;AN=2184 GT:DS:GL:BD 0.57509160 1 1 62846843 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.311;LDAF=0.0083;AVGPOST=0.9923;RSQ=0.6318;ERATE=0.0010;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62846952 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.948;LDAF=0.5864;AVGPOST=0.9742;RSQ=0.9584;ERATE=0.0035;THETA=0.0022;AC=1279;AN=2184 GT:DS:GL:BD 0.58562273 1 1 62847006 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.460;LDAF=0.0340;AVGPOST=0.9599;RSQ=0.5556;ERATE=0.0016;THETA=0.0013;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 62847084 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0057;AVGPOST=0.9981;RSQ=0.8593;ERATE=0.0006;THETA=0.0016;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62847203 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0022;AVGPOST=0.9967;RSQ=0.4391;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62847291 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.876;LDAF=0.0089;AVGPOST=0.9978;RSQ=0.9013;ERATE=0.0005;THETA=0.0011;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62847418 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9553;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62847481 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0021;AVGPOST=0.9990;RSQ=0.8062;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62847531 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5818;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62847586 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0047;AVGPOST=0.9995;RSQ=0.9505;ERATE=0.0003;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62847763 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9403;ERATE=0.0004;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62847871 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.897;LDAF=0.0056;AVGPOST=0.9984;RSQ=0.8856;ERATE=0.0007;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62847893 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8407;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62847925 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7209;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62847933 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6966;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62848037 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8123;ERATE=0.0006;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62848090 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5883;AVGPOST=0.9967;RSQ=0.9949;ERATE=0.0004;THETA=0.0005;AC=1285;AN=2184 GT:DS:GL:BD 0.58836997 1 1 62848102 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0072;AVGPOST=0.9993;RSQ=0.9591;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62848113 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9594;AVGPOST=0.9984;RSQ=0.9830;ERATE=0.0004;THETA=0.0007;AC=2097;AN=2184 GT:DS:GL:BD 0.96016484 1 1 62848302 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6034;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62848385 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0099;AVGPOST=0.9982;RSQ=0.9338;ERATE=0.0021;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62848386 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.929;LDAF=0.0129;AVGPOST=0.9983;RSQ=0.9491;ERATE=0.0003;THETA=0.0007;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 62848388 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0028;AVGPOST=1.0000;RSQ=0.9921;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62848398 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62848451 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.856;LDAF=0.0044;AVGPOST=0.9991;RSQ=0.9375;ERATE=0.0004;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62848647 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.725;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5223;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62848694 rs5774602 CAG C 62070 PASS INDEL;BAVGPOST=0.990;BRSQ=0.981;LDAF=0.5844;AVGPOST=0.9910;RSQ=0.9865;ERATE=0.0010;THETA=0.0003;AC=1277;AN=2184 GT:DS:GL:BD 0.58470696 1 1 62848698 rs61706435 GA G 7497 PASS INDEL;BAVGPOST=0.906;BRSQ=0.840;LDAF=0.4889;AVGPOST=0.8576;RSQ=0.7980;ERATE=0.0221;THETA=0.0002;AC=1116;AN=2184 GT:DS:GL:BD 0.51098901 1 1 62848746 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62848778 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62848884 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8123;ERATE=0.0004;THETA=0.0027;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62849000 . T TA 91 PASS INDEL;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7921;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62849500 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62849627 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6022;AVGPOST=0.9963;RSQ=0.9942;ERATE=0.0006;THETA=0.0006;AC=1317;AN=2184 GT:DS:GL:BD 0.60302198 1 1 62849645 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0023;AVGPOST=0.9985;RSQ=0.7380;ERATE=0.0006;THETA=0.0043;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62849661 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8558;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62849747 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8265;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62849861 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62849921 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8333;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62849987 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=0.9992;RSQ=0.9341;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62850086 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.7802;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62850111 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0152;AVGPOST=0.9988;RSQ=0.9698;ERATE=0.0003;THETA=0.0009;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62850266 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.6005;AVGPOST=0.9959;RSQ=0.9933;ERATE=0.0004;THETA=0.0064;AC=1313;AN=2184 GT:DS:GL:BD 0.60119045 1 1 62850593 . TG T 15 PASS INDEL;BAVGPOST=0.999;BRSQ=0.665;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4281;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62850722 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62850837 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.5194;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62850882 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5766;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62851061 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7457;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62851210 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.727;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4434;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62851390 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6168;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62851438 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0025;AVGPOST=0.9984;RSQ=0.7396;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62851456 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6200;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62851487 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9997;RSQ=0.9811;ERATE=0.0004;THETA=0.0032;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62851550 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0020;AVGPOST=0.9994;RSQ=0.8742;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62851643 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.690;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5272;ERATE=0.0004;THETA=0.0053;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62851694 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0032;AVGPOST=0.9989;RSQ=0.9021;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62851713 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0079;AVGPOST=0.9988;RSQ=0.9366;ERATE=0.0004;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62851715 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.976;LDAF=0.0391;AVGPOST=0.9964;RSQ=0.9659;ERATE=0.0009;THETA=0.0003;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 62851754 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.994;LDAF=0.5861;AVGPOST=0.9878;RSQ=0.9809;ERATE=0.0018;THETA=0.0012;AC=1282;AN=2184 GT:DS:GL:BD 0.58699632 1 1 62851757 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0192;AVGPOST=0.9985;RSQ=0.9733;ERATE=0.0003;THETA=0.0003;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 62851809 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0016;AVGPOST=0.9981;RSQ=0.5073;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62851875 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8368;AVGPOST=0.9981;RSQ=0.9950;ERATE=0.0005;THETA=0.0015;AC=1828;AN=2184 GT:DS:GL:BD 0.83699632 1 1 62851933 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8367;AVGPOST=0.9985;RSQ=0.9965;ERATE=0.0004;THETA=0.0004;AC=1828;AN=2184 GT:DS:GL:BD 0.83699632 1 1 62851968 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6526;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62852017 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9282;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62852022 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8592;AVGPOST=0.9986;RSQ=0.9956;ERATE=0.0004;THETA=0.0064;AC=1876;AN=2184 GT:DS:GL:BD 0.85897434 1 1 62852037 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8438;AVGPOST=0.9987;RSQ=0.9962;ERATE=0.0004;THETA=0.0012;AC=1843;AN=2184 GT:DS:GL:BD 0.84386444 1 1 62852053 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0004;AVGPOST=0.9994;RSQ=0.4217;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62852092 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8567;ERATE=0.0003;THETA=0.0031;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62852187 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62852292 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0028;AVGPOST=0.9991;RSQ=0.8694;ERATE=0.0006;THETA=0.0037;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62852324 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6817;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62852333 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9029;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62852341 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9997;RSQ=0.9811;ERATE=0.0003;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62852352 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62852400 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9310;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62852521 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62852574 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.737;LDAF=0.0024;AVGPOST=0.9990;RSQ=0.8446;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62852662 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9556;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62852801 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5871;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62852910 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0172;AVGPOST=0.9982;RSQ=0.9604;ERATE=0.0003;THETA=0.0020;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 62852941 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.7956;ERATE=0.0009;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62853034 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62853085 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.8925;AVGPOST=0.9990;RSQ=0.9951;ERATE=0.0003;THETA=0.0006;AC=1951;AN=2184 GT:DS:GL:BD 0.89331502 1 1 62853108 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.8151;AVGPOST=0.9985;RSQ=0.9955;ERATE=0.0005;THETA=0.0006;AC=1782;AN=2184 GT:DS:GL:BD 0.81593406 1 1 62853117 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.965;LDAF=0.1839;AVGPOST=0.9887;RSQ=0.9737;ERATE=0.0006;THETA=0.0008;AC=401;AN=2184 GT:DS:GL:BD 0.18360806 0 1 62853146 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7947;AVGPOST=0.9990;RSQ=0.9975;ERATE=0.0003;THETA=0.0008;AC=1737;AN=2184 GT:DS:GL:BD 0.79532969 1 1 62853159 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.7494;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62853333 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.701;LDAF=0.0090;AVGPOST=0.9932;RSQ=0.6982;ERATE=0.0011;THETA=0.0009;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62853347 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62853417 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.7944;AVGPOST=0.9982;RSQ=0.9953;ERATE=0.0007;THETA=0.0007;AC=1737;AN=2184 GT:DS:GL:BD 0.79532969 1 1 62853469 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0054;AVGPOST=0.9993;RSQ=0.9507;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62853615 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8600;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62853702 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0084;AVGPOST=0.9969;RSQ=0.8582;ERATE=0.0006;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62853789 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.982;LDAF=0.7923;AVGPOST=0.9938;RSQ=0.9845;ERATE=0.0008;THETA=0.0006;AC=1736;AN=2184 GT:DS:GL:BD 0.79487181 1 1 62853821 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.5123;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62853916 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.606;LDAF=0.0025;AVGPOST=0.9962;RSQ=0.4237;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62854009 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.8958;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62854079 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9726;ERATE=0.0004;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62854392 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=1.0000;RSQ=0.9968;ERATE=0.0003;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62854591 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0430;AVGPOST=0.9985;RSQ=0.9870;ERATE=0.0004;THETA=0.0006;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 62854605 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6250;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62854642 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0347;AVGPOST=0.9992;RSQ=0.9918;ERATE=0.0004;THETA=0.0004;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 62854675 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8358;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62854808 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.954;LDAF=0.1729;AVGPOST=0.9718;RSQ=0.9306;ERATE=0.0077;THETA=0.0005;AC=366;AN=2184 GT:DS:GL:BD 0.16758242 0 1 62854923 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62854960 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62855008 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62855053 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0091;AVGPOST=0.9982;RSQ=0.9171;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62855055 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9139;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62855173 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.785;LDAF=0.0039;AVGPOST=0.9975;RSQ=0.7720;ERATE=0.0006;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62855190 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0202;AVGPOST=0.9987;RSQ=0.9744;ERATE=0.0003;THETA=0.0003;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 62855198 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.8927;AVGPOST=0.9995;RSQ=0.9974;ERATE=0.0003;THETA=0.0006;AC=1951;AN=2184 GT:DS:GL:BD 0.89331502 1 1 62855219 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.745;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8891;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62855336 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.828;LDAF=0.0061;AVGPOST=0.9984;RSQ=0.8835;ERATE=0.0006;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62855371 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6953;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62855383 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.7944;AVGPOST=0.9987;RSQ=0.9965;ERATE=0.0006;THETA=0.0003;AC=1737;AN=2184 GT:DS:GL:BD 0.79532969 1 1 62855424 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0348;AVGPOST=0.9989;RSQ=0.9876;ERATE=0.0003;THETA=0.0008;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 62855431 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0207;AVGPOST=0.9995;RSQ=0.9895;ERATE=0.0003;THETA=0.0007;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 62855523 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.7944;AVGPOST=0.9982;RSQ=0.9952;ERATE=0.0006;THETA=0.0004;AC=1737;AN=2184 GT:DS:GL:BD 0.79532969 1 1 62855697 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.837;LDAF=0.0054;AVGPOST=0.9980;RSQ=0.8509;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62855816 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0037;AVGPOST=0.9992;RSQ=0.9156;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62855968 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.912;LDAF=0.0107;AVGPOST=0.9986;RSQ=0.9403;ERATE=0.0004;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62855984 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5905;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62855996 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0030;AVGPOST=0.9988;RSQ=0.8506;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62856006 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5845;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62856265 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.8350;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62856314 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9203;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62856331 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.896;LDAF=0.0108;AVGPOST=0.9967;RSQ=0.8865;ERATE=0.0005;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62856341 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7948;AVGPOST=0.9996;RSQ=0.9990;ERATE=0.0003;THETA=0.0015;AC=1737;AN=2184 GT:DS:GL:BD 0.79532969 1 1 62856562 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0161;AVGPOST=0.9998;RSQ=0.9934;ERATE=0.0003;THETA=0.0009;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62856689 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6729;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62856695 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8157;AVGPOST=0.9993;RSQ=0.9978;ERATE=0.0003;THETA=0.0006;AC=1783;AN=2184 GT:DS:GL:BD 0.81639194 1 1 62856760 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8665;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62856845 . T TG 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7061;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62856959 . T TC 21 PASS INDEL;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5810;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62857284 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6529;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62857289 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.8005;AVGPOST=0.9969;RSQ=0.9918;ERATE=0.0010;THETA=0.0006;AC=1749;AN=2184 GT:DS:GL:BD 0.80082417 1 1 62857370 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62857404 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0044;AVGPOST=0.9994;RSQ=0.9543;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62857518 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.8933;AVGPOST=0.9989;RSQ=0.9953;ERATE=0.0004;THETA=0.0006;AC=1953;AN=2184 GT:DS:GL:BD 0.89423078 1 1 62857831 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5088;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62857842 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62857905 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0028;AVGPOST=0.9991;RSQ=0.8816;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62857914 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5290;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62857936 . CCTT C 29 PASS INDEL;BAVGPOST=1.000;BRSQ=0.713;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6776;ERATE=0.0004;THETA=0.0056;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62857994 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62858079 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2528;AVGPOST=0.9997;RSQ=0.9992;ERATE=0.0003;THETA=0.0003;AC=552;AN=2184 GT:DS:GL:BD 0.25274727 0 1 62858250 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0032;AVGPOST=0.9996;RSQ=0.9475;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62858354 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2524;AVGPOST=0.9993;RSQ=0.9983;ERATE=0.0004;THETA=0.0003;AC=551;AN=2184 GT:DS:GL:BD 0.25228938 0 1 62858508 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5640;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62858634 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2530;AVGPOST=0.9987;RSQ=0.9970;ERATE=0.0005;THETA=0.0004;AC=552;AN=2184 GT:DS:GL:BD 0.25274727 0 1 62858805 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0043;AVGPOST=0.9984;RSQ=0.8520;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62858891 . A AT 93 PASS INDEL;BAVGPOST=0.997;BRSQ=0.533;LDAF=0.0072;AVGPOST=0.9905;RSQ=0.5263;ERATE=0.0022;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62858929 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.9520;AVGPOST=0.9987;RSQ=0.9884;ERATE=0.0004;THETA=0.0004;AC=2080;AN=2184 GT:DS:GL:BD 0.95238096 1 1 62858999 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.0524;AVGPOST=0.9986;RSQ=0.9897;ERATE=0.0004;THETA=0.0003;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 62859141 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0299;AVGPOST=0.9997;RSQ=0.9950;ERATE=0.0004;THETA=0.0010;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 62859143 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0033;AVGPOST=0.9990;RSQ=0.8772;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62859174 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62859230 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62859245 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3049;AVGPOST=0.9988;RSQ=0.9976;ERATE=0.0004;THETA=0.0009;AC=666;AN=2184 GT:DS:GL:BD 0.30494505 0 1 62859290 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6495;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62859292 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8389;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62859294 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.929;LDAF=0.0043;AVGPOST=0.9986;RSQ=0.8636;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62859429 . AAAAT A 10859 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0546;AVGPOST=0.9969;RSQ=0.9778;ERATE=0.0005;THETA=0.0004;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 62859455 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0019;AVGPOST=0.9993;RSQ=0.8506;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62859688 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8396;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62859744 . TC T 221 PASS INDEL;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62859760 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62859782 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.950;LDAF=0.0202;AVGPOST=0.9964;RSQ=0.9319;ERATE=0.0005;THETA=0.0029;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 62860018 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0153;AVGPOST=0.9994;RSQ=0.9818;ERATE=0.0004;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62860166 . AAT A 2205 PASS INDEL;BAVGPOST=0.998;BRSQ=0.935;LDAF=0.0154;AVGPOST=0.9959;RSQ=0.8972;ERATE=0.0004;THETA=0.0010;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62860197 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0046;AVGPOST=0.9988;RSQ=0.9050;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62860287 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0118;AVGPOST=0.9984;RSQ=0.9508;ERATE=0.0003;THETA=0.0009;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 62860310 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.8924;AVGPOST=0.9996;RSQ=0.9983;ERATE=0.0003;THETA=0.0003;AC=1951;AN=2184 GT:DS:GL:BD 0.89331502 1 1 62860332 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5874;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62860410 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0017;AVGPOST=0.9980;RSQ=0.6351;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62860420 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0072;AVGPOST=0.9993;RSQ=0.9567;ERATE=0.0004;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62860466 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0101;AVGPOST=0.9973;RSQ=0.9124;ERATE=0.0003;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62860627 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0349;AVGPOST=0.9996;RSQ=0.9951;ERATE=0.0003;THETA=0.0010;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 62860704 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.639;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.6204;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62860933 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0499;AVGPOST=0.9980;RSQ=0.9834;ERATE=0.0004;THETA=0.0005;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 62861032 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.6974;ERATE=0.0005;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62861093 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.8306;AVGPOST=0.9985;RSQ=0.9962;ERATE=0.0006;THETA=0.0005;AC=1816;AN=2184 GT:DS:GL:BD 0.83150184 1 1 62861261 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.958;LDAF=0.0280;AVGPOST=0.9953;RSQ=0.9307;ERATE=0.0005;THETA=0.0007;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 62861281 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62861299 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.6131;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62861318 . T TC 70 PASS INDEL;BAVGPOST=1.000;BRSQ=0.710;LDAF=0.0039;AVGPOST=0.9938;RSQ=0.4117;ERATE=0.0010;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62861393 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6200;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62861440 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.680;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7393;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62861533 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0032;AVGPOST=0.9987;RSQ=0.8418;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62861580 . T TA 1118 PASS INDEL;BAVGPOST=0.989;BRSQ=0.883;LDAF=0.0574;AVGPOST=0.9725;RSQ=0.7920;ERATE=0.0060;THETA=0.0006;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 62861843 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0452;AVGPOST=0.9977;RSQ=0.9798;ERATE=0.0005;THETA=0.0007;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 62861961 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.878;LDAF=0.0085;AVGPOST=0.9966;RSQ=0.8507;ERATE=0.0004;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62861962 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.916;LDAF=0.0180;AVGPOST=0.9972;RSQ=0.9384;ERATE=0.0004;THETA=0.0005;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62861988 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0036;AVGPOST=0.9941;RSQ=0.3395;ERATE=0.0011;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62862064 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.8242;AVGPOST=0.9957;RSQ=0.9879;ERATE=0.0007;THETA=0.0005;AC=1805;AN=2184 GT:DS:GL:BD 0.82646519 1 1 62862115 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9340;AVGPOST=0.9965;RSQ=0.9747;ERATE=0.0009;THETA=0.0005;AC=2044;AN=2184 GT:DS:GL:BD 0.93589741 1 1 62862157 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0029;AVGPOST=0.9962;RSQ=0.4951;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62862212 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8319;AVGPOST=0.9989;RSQ=0.9964;ERATE=0.0006;THETA=0.0005;AC=1819;AN=2184 GT:DS:GL:BD 0.83287543 1 1 62862285 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8322;AVGPOST=0.9993;RSQ=0.9978;ERATE=0.0004;THETA=0.0009;AC=1819;AN=2184 GT:DS:GL:BD 0.83287543 1 1 62862331 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9354;AVGPOST=0.9996;RSQ=0.9973;ERATE=0.0004;THETA=0.0003;AC=2044;AN=2184 GT:DS:GL:BD 0.93589741 1 1 62862429 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0065;AVGPOST=0.9987;RSQ=0.9054;ERATE=0.0005;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62862500 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8799;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62862744 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6981;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62862819 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6947;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62862838 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0431;AVGPOST=0.9989;RSQ=0.9894;ERATE=0.0003;THETA=0.0007;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 62862959 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=0.9988;RSQ=0.7705;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62863032 . A AG 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6738;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62863122 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62863166 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62863248 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0523;AVGPOST=0.9996;RSQ=0.9960;ERATE=0.0004;THETA=0.0005;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 62863257 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0099;AVGPOST=0.9977;RSQ=0.9194;ERATE=0.0003;THETA=0.0010;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62863284 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.801;LDAF=0.0053;AVGPOST=0.9985;RSQ=0.8812;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62863388 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0764;AVGPOST=0.9997;RSQ=0.9986;ERATE=0.0004;THETA=0.0007;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 62863443 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0032;AVGPOST=0.9992;RSQ=0.9063;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62863600 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9998;RSQ=0.9845;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62863632 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8112;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62863872 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0767;AVGPOST=0.9992;RSQ=0.9961;ERATE=0.0003;THETA=0.0004;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 62863876 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.936;LDAF=0.0594;AVGPOST=0.9931;RSQ=0.9513;ERATE=0.0008;THETA=0.0006;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 62863905 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.9046;ERATE=0.0004;THETA=0.0011;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62863940 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0481;AVGPOST=0.9980;RSQ=0.9858;ERATE=0.0004;THETA=0.0009;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 62863981 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.967;LDAF=0.0524;AVGPOST=0.9867;RSQ=0.9098;ERATE=0.0011;THETA=0.0007;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 62863989 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.486;LDAF=0.0216;AVGPOST=0.9757;RSQ=0.5547;ERATE=0.0031;THETA=0.0015;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62864076 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4919;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62864112 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0767;AVGPOST=0.9989;RSQ=0.9945;ERATE=0.0005;THETA=0.0006;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 62864179 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0524;AVGPOST=0.9988;RSQ=0.9890;ERATE=0.0003;THETA=0.0004;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 62864201 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.451;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.6976;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62864223 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0033;AVGPOST=0.9986;RSQ=0.8337;ERATE=0.0003;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62864491 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.593;LDAF=0.0020;AVGPOST=0.9985;RSQ=0.6756;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62864496 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4916;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62864501 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.744;LDAF=0.0042;AVGPOST=0.9982;RSQ=0.8278;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62864509 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0756;AVGPOST=0.9974;RSQ=0.9881;ERATE=0.0006;THETA=0.0018;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 62864573 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.3941;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62864650 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62864696 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7053;ERATE=0.0004;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62864908 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.740;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6495;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62864913 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9327;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62864914 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62864993 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8483;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62865065 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0054;AVGPOST=0.9989;RSQ=0.9172;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62865107 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6523;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62865181 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8774;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62865222 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62865236 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6066;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62865252 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9009;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62865309 . T TA 51 PASS INDEL;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5142;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62865477 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8113;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62865491 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0479;AVGPOST=0.9994;RSQ=0.9947;ERATE=0.0003;THETA=0.0004;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 62865513 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0252;AVGPOST=0.9992;RSQ=0.9871;ERATE=0.0005;THETA=0.0003;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 62865560 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0021;AVGPOST=0.9976;RSQ=0.4952;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62865763 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0254;AVGPOST=0.9993;RSQ=0.9887;ERATE=0.0005;THETA=0.0003;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 62865826 . T TC 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4920;ERATE=0.0007;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62865876 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.8156;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62865935 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.891;LDAF=0.0258;AVGPOST=0.9895;RSQ=0.8535;ERATE=0.0016;THETA=0.0004;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 62865995 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0270;AVGPOST=0.9973;RSQ=0.9620;ERATE=0.0005;THETA=0.0005;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 62866207 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.644;LDAF=0.0028;AVGPOST=0.9965;RSQ=0.4960;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62866228 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6745;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62866304 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.476;LDAF=0.0027;AVGPOST=0.9953;RSQ=0.3026;ERATE=0.0010;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62866328 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.731;LDAF=0.0107;AVGPOST=0.9953;RSQ=0.8227;ERATE=0.0004;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 62866390 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1443;AVGPOST=0.9951;RSQ=0.9857;ERATE=0.0005;THETA=0.0006;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 62866529 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=1.0000;RSQ=0.9968;ERATE=0.0003;THETA=0.0017;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62866708 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.581;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5935;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62866750 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0084;AVGPOST=0.9993;RSQ=0.9619;ERATE=0.0004;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62866809 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.6076;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62866818 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0479;AVGPOST=0.9993;RSQ=0.9939;ERATE=0.0003;THETA=0.0023;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 62866854 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7307;AVGPOST=0.9973;RSQ=0.9939;ERATE=0.0006;THETA=0.0004;AC=1597;AN=2184 GT:DS:GL:BD 0.73122710 1 1 62867013 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0242;AVGPOST=0.9999;RSQ=0.9978;ERATE=0.0003;THETA=0.0003;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 62867052 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0028;AVGPOST=0.9995;RSQ=0.9102;ERATE=0.0007;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62867115 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1436;AVGPOST=0.9994;RSQ=0.9978;ERATE=0.0004;THETA=0.0004;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 62867153 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0044;AVGPOST=0.9994;RSQ=0.9359;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62867236 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62867375 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0032;AVGPOST=0.9986;RSQ=0.8412;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62867457 . A AT 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8034;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62867483 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.7271;AVGPOST=0.9973;RSQ=0.9945;ERATE=0.0016;THETA=0.0003;AC=1590;AN=2184 GT:DS:GL:BD 0.72802198 1 1 62867563 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9626;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62867651 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9354;AVGPOST=0.9998;RSQ=0.9982;ERATE=0.0003;THETA=0.0006;AC=2044;AN=2184 GT:DS:GL:BD 0.93589741 1 1 62867738 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0243;AVGPOST=0.9999;RSQ=0.9984;ERATE=0.0003;THETA=0.0004;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 62867744 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62867790 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7464;AVGPOST=0.9974;RSQ=0.9955;ERATE=0.0007;THETA=0.0004;AC=1632;AN=2184 GT:DS:GL:BD 0.74725276 1 1 62867801 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7959;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62868039 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.781;LDAF=0.0082;AVGPOST=0.9977;RSQ=0.8902;ERATE=0.0004;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62868045 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.786;LDAF=0.0143;AVGPOST=0.9941;RSQ=0.8357;ERATE=0.0004;THETA=0.0007;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 62868116 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.587;LDAF=0.0037;AVGPOST=0.9952;RSQ=0.4434;ERATE=0.0009;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62868154 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.418;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.3927;ERATE=0.0010;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62868330 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0727;AVGPOST=0.9995;RSQ=0.9966;ERATE=0.0004;THETA=0.0006;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 62868350 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6200;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62868351 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2048;AVGPOST=0.9969;RSQ=0.9923;ERATE=0.0006;THETA=0.0004;AC=447;AN=2184 GT:DS:GL:BD 0.20467032 0 1 62868352 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.474;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7767;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62868622 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.8212;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62868624 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7420;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62868637 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0319;AVGPOST=0.9982;RSQ=0.9776;ERATE=0.0005;THETA=0.0007;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 62868667 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.894;LDAF=0.0665;AVGPOST=0.9964;RSQ=0.9745;ERATE=0.0005;THETA=0.0006;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 62868735 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.612;LDAF=0.0023;AVGPOST=0.9979;RSQ=0.6375;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62868959 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6072;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62868960 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0758;AVGPOST=0.9999;RSQ=0.9993;ERATE=0.0003;THETA=0.0006;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 62869014 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7624;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62869083 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0074;AVGPOST=0.9989;RSQ=0.9377;ERATE=0.0003;THETA=0.0020;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62869139 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.7524;AVGPOST=0.9968;RSQ=0.9947;ERATE=0.0003;THETA=0.0005;AC=1644;AN=2184 GT:DS:GL:BD 0.75274724 1 1 62869219 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0476;AVGPOST=0.9981;RSQ=0.9862;ERATE=0.0003;THETA=0.0020;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 62869236 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62869264 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4990;ERATE=0.0004;THETA=0.0048;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62869365 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.679;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7826;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62869460 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.848;LDAF=0.0067;AVGPOST=0.9984;RSQ=0.9185;ERATE=0.0004;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62869481 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.952;LDAF=0.0291;AVGPOST=0.9963;RSQ=0.9479;ERATE=0.0004;THETA=0.0007;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 62869482 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0020;AVGPOST=0.9991;RSQ=0.7969;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62869537 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9352;AVGPOST=0.9990;RSQ=0.9923;ERATE=0.0004;THETA=0.0004;AC=2044;AN=2184 GT:DS:GL:BD 0.93589741 1 1 62869562 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0046;AVGPOST=0.9996;RSQ=0.9595;ERATE=0.0003;THETA=0.0021;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62869597 . GA G 615 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0069;AVGPOST=0.9996;RSQ=0.9724;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62869606 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0526;AVGPOST=0.9982;RSQ=0.9887;ERATE=0.0004;THETA=0.0006;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 62869662 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.962;LDAF=0.1195;AVGPOST=0.9981;RSQ=0.9927;ERATE=0.0005;THETA=0.0008;AC=260;AN=2184 GT:DS:GL:BD 0.11904762 0 1 62869718 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.700;LDAF=0.0045;AVGPOST=0.9963;RSQ=0.6870;ERATE=0.0005;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62869737 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.5249;ERATE=0.0010;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62869845 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1197;AVGPOST=0.9982;RSQ=0.9932;ERATE=0.0006;THETA=0.0047;AC=260;AN=2184 GT:DS:GL:BD 0.11904762 0 1 62869892 . AAAG A 494 PASS INDEL;BAVGPOST=0.993;BRSQ=0.790;LDAF=0.0203;AVGPOST=0.9884;RSQ=0.7751;ERATE=0.0010;THETA=0.0037;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 62869895 . G GAA 2916 PASS INDEL;BAVGPOST=0.975;BRSQ=0.689;LDAF=0.0593;AVGPOST=0.9503;RSQ=0.6480;ERATE=0.0086;THETA=0.0004;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 62869910 . GAA G 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7918;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62870049 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8037;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62870054 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0045;AVGPOST=0.9990;RSQ=0.9178;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62870150 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7332;ERATE=0.0005;THETA=0.0030;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62870181 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.896;LDAF=0.0346;AVGPOST=0.9962;RSQ=0.9557;ERATE=0.0005;THETA=0.0010;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 62870449 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0142;AVGPOST=0.9984;RSQ=0.9553;ERATE=0.0003;THETA=0.0042;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62870744 . ATCT A 42 PASS INDEL;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0021;AVGPOST=0.9970;RSQ=0.4153;ERATE=0.0006;THETA=0.0041;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62871010 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5742;ERATE=0.0003;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62871048 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62871083 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.909;LDAF=0.0323;AVGPOST=0.9939;RSQ=0.9151;ERATE=0.0006;THETA=0.0013;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 62871090 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6151;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62871095 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0199;AVGPOST=0.9994;RSQ=0.9865;ERATE=0.0003;THETA=0.0012;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 62871100 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.8040;AVGPOST=0.9968;RSQ=0.9927;ERATE=0.0003;THETA=0.0012;AC=1755;AN=2184 GT:DS:GL:BD 0.80357140 1 1 62871116 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0200;AVGPOST=0.9991;RSQ=0.9827;ERATE=0.0003;THETA=0.0011;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 62871143 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8061;ERATE=0.0003;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62871150 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4540;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62871157 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6461;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62871158 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0321;AVGPOST=0.9995;RSQ=0.9935;ERATE=0.0003;THETA=0.0010;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 62871200 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0051;AVGPOST=0.9995;RSQ=0.9513;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62871276 . TTTG T 4800 PASS INDEL;BAVGPOST=0.723;BRSQ=0.433;LDAF=0.3896;AVGPOST=0.7307;RSQ=0.4804;ERATE=0.0907;THETA=0.0006;AC=727;AN=2184 GT:DS:GL:BD 0.33287546 0 1 62871285 . T TG 95 PASS INDEL;BAVGPOST=0.999;BRSQ=0.682;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.5693;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62871288 rs55777857 T TG 327 PASS INDEL;BAVGPOST=0.983;BRSQ=0.859;LDAF=0.0664;AVGPOST=0.9943;RSQ=0.9624;ERATE=0.0005;THETA=0.0005;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 62871327 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.859;LDAF=0.0081;AVGPOST=0.9982;RSQ=0.9144;ERATE=0.0004;THETA=0.0008;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62871344 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0099;AVGPOST=0.9973;RSQ=0.8972;ERATE=0.0006;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62871449 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.629;LDAF=0.0171;AVGPOST=0.9840;RSQ=0.6358;ERATE=0.0010;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62871566 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.531;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5266;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62871701 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6601;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62871750 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0322;AVGPOST=0.9995;RSQ=0.9928;ERATE=0.0004;THETA=0.0004;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 62871891 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.7535;AVGPOST=0.9947;RSQ=0.9904;ERATE=0.0005;THETA=0.0035;AC=1649;AN=2184 GT:DS:GL:BD 0.75503665 1 1 62871923 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.7449;ERATE=0.0004;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62871941 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0037;AVGPOST=0.9989;RSQ=0.8761;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62872060 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.763;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62872091 . AC A 483 PASS INDEL;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0037;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62872144 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9282;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62872148 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0106;AVGPOST=0.9990;RSQ=0.9642;ERATE=0.0003;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 62872169 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8164;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62872306 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9829;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62872369 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0005;AVGPOST=0.9993;RSQ=0.4625;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62872400 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0004;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62872495 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62872581 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9431;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62873074 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1005;AVGPOST=0.9996;RSQ=0.9972;ERATE=0.0004;THETA=0.0006;AC=219;AN=2184 GT:DS:GL:BD 0.10027473 0 1 62873180 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8459;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62873496 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0356;AVGPOST=0.9973;RSQ=0.9688;ERATE=0.0009;THETA=0.0006;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 62873507 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.592;LDAF=0.0029;AVGPOST=0.9984;RSQ=0.7352;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62873644 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0322;AVGPOST=0.9993;RSQ=0.9903;ERATE=0.0004;THETA=0.0007;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 62873648 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.5980;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62873690 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5543;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62873719 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.658;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8155;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62873779 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0045;AVGPOST=0.9990;RSQ=0.9242;ERATE=0.0003;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62873953 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.741;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4064;ERATE=0.0006;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62874050 rs112753566 C CA 11593 PASS INDEL;BAVGPOST=0.961;BRSQ=0.892;LDAF=0.1854;AVGPOST=0.9683;RSQ=0.9372;ERATE=0.0006;THETA=0.0008;AC=404;AN=2184 GT:DS:GL:BD 0.18498169 0 1 62874053 . A AC 1571 PASS INDEL;BAVGPOST=0.940;BRSQ=0.814;LDAF=0.1558;AVGPOST=0.9543;RSQ=0.8925;ERATE=0.0006;THETA=0.0006;AC=345;AN=2184 GT:DS:GL:BD 0.15796703 0 1 62874122 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0022;AVGPOST=0.9972;RSQ=0.5666;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62874148 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0036;AVGPOST=0.9993;RSQ=0.9309;ERATE=0.0003;THETA=0.0012;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62874239 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9267;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62874377 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.933;LDAF=0.0316;AVGPOST=0.9925;RSQ=0.9038;ERATE=0.0004;THETA=0.0007;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 62874458 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0163;AVGPOST=0.9984;RSQ=0.9624;ERATE=0.0003;THETA=0.0039;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62874739 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1199;AVGPOST=0.9983;RSQ=0.9937;ERATE=0.0004;THETA=0.0005;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 62874813 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0027;AVGPOST=0.9973;RSQ=0.6900;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62874842 . GCTC G 39 PASS INDEL;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7543;ERATE=0.0004;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62874946 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0158;AVGPOST=0.9995;RSQ=0.9884;ERATE=0.0003;THETA=0.0007;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62875069 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2051;AVGPOST=0.9976;RSQ=0.9946;ERATE=0.0004;THETA=0.0004;AC=449;AN=2184 GT:DS:GL:BD 0.20558608 0 1 62875090 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6493;ERATE=0.0003;THETA=0.0054;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62875313 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.7537;AVGPOST=0.9930;RSQ=0.9854;ERATE=0.0003;THETA=0.0003;AC=1647;AN=2184 GT:DS:GL:BD 0.75412089 1 1 62875323 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0032;AVGPOST=0.9992;RSQ=0.9061;ERATE=0.0003;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62875427 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62875869 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0157;AVGPOST=0.9996;RSQ=0.9909;ERATE=0.0003;THETA=0.0046;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62875930 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0044;AVGPOST=0.9992;RSQ=0.9291;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62875950 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8709;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62876103 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.781;LDAF=0.0055;AVGPOST=0.9969;RSQ=0.7686;ERATE=0.0003;THETA=0.0011;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62876133 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0162;AVGPOST=0.9986;RSQ=0.9686;ERATE=0.0004;THETA=0.0006;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 62876235 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62876320 . T TA 10974 PASS INDEL;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.1418;AVGPOST=0.9912;RSQ=0.9734;ERATE=0.0010;THETA=0.0008;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 62876381 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0061;AVGPOST=0.9995;RSQ=0.9614;ERATE=0.0003;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62876530 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0051;AVGPOST=0.9988;RSQ=0.9240;ERATE=0.0004;THETA=0.0018;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62876555 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5670;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62876586 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8735;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62876588 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0022;AVGPOST=0.9973;RSQ=0.4894;ERATE=0.0009;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62876683 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5551;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62876703 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0036;AVGPOST=0.9991;RSQ=0.9070;ERATE=0.0003;THETA=0.0028;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62876706 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62876744 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62876775 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62876850 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8832;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62877142 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0378;AVGPOST=0.9988;RSQ=0.9878;ERATE=0.0006;THETA=0.0006;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 62877255 . T TTCCC 883 PASS INDEL;BAVGPOST=0.975;BRSQ=0.617;LDAF=0.0607;AVGPOST=0.9447;RSQ=0.6510;ERATE=0.0032;THETA=0.0004;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 62877318 . CTTCTTTCTTTTCT C 9761 PASS INDEL;BAVGPOST=0.975;BRSQ=0.902;LDAF=0.1019;AVGPOST=0.9945;RSQ=0.9754;ERATE=0.0004;THETA=0.0013;AC=222;AN=2184 GT:DS:GL:BD 0.10164835 0 1 62877549 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0060;AVGPOST=0.9989;RSQ=0.9229;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62877744 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6684;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62877894 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9871;ERATE=0.0003;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62877899 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0057;AVGPOST=0.9989;RSQ=0.9389;ERATE=0.0003;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62877952 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1421;AVGPOST=0.9988;RSQ=0.9962;ERATE=0.0003;THETA=0.0005;AC=310;AN=2184 GT:DS:GL:BD 0.14194140 0 1 62877955 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1424;AVGPOST=0.9981;RSQ=0.9943;ERATE=0.0005;THETA=0.0007;AC=311;AN=2184 GT:DS:GL:BD 0.14239927 0 1 62877961 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.8162;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62877964 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0003;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62878358 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.894;LDAF=0.0207;AVGPOST=0.9940;RSQ=0.8821;ERATE=0.0004;THETA=0.0008;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 62878376 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0053;AVGPOST=0.9994;RSQ=0.9490;ERATE=0.0003;THETA=0.0014;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62878480 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0021;AVGPOST=0.9973;RSQ=0.5053;ERATE=0.0005;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62878493 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0031;AVGPOST=0.9992;RSQ=0.8814;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62878652 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.631;LDAF=0.0147;AVGPOST=0.9857;RSQ=0.6174;ERATE=0.0029;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62878758 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0173;AVGPOST=0.9983;RSQ=0.9591;ERATE=0.0004;THETA=0.0009;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62878877 . G GA 11640 PASS INDEL;BAVGPOST=0.995;BRSQ=0.985;LDAF=0.1478;AVGPOST=0.9923;RSQ=0.9791;ERATE=0.0009;THETA=0.0010;AC=319;AN=2184 GT:DS:GL:BD 0.14606227 0 1 62878906 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8005;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62879008 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5789;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62879114 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0026;AVGPOST=0.9968;RSQ=0.5281;ERATE=0.0005;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62879239 . A AG 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4564;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62879415 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7748;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62879565 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0061;AVGPOST=0.9996;RSQ=0.9713;ERATE=0.0004;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62879749 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0052;AVGPOST=0.9969;RSQ=0.7738;ERATE=0.0005;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62879843 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0059;AVGPOST=0.9991;RSQ=0.9408;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62880088 rs11446678 C CA 652 PASS INDEL;BAVGPOST=0.836;BRSQ=0.346;LDAF=0.2104;AVGPOST=0.7548;RSQ=0.3574;ERATE=0.0422;THETA=0.0006;AC=265;AN=2184 GT:DS:GL:BD 0.12133700 0 1 62880152 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.709;LDAF=0.0047;AVGPOST=0.9943;RSQ=0.5134;ERATE=0.0006;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62880296 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5654;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62880311 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62880312 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8348;ERATE=0.0005;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62880403 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8786;ERATE=0.0003;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62880498 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.693;LDAF=0.0028;AVGPOST=0.9960;RSQ=0.4354;ERATE=0.0012;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62880538 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0022;AVGPOST=0.9974;RSQ=0.4687;ERATE=0.0007;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62880716 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.744;LDAF=0.0051;AVGPOST=0.9970;RSQ=0.7597;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62880889 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.960;LDAF=0.0336;AVGPOST=0.9901;RSQ=0.8823;ERATE=0.0007;THETA=0.0007;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 62881006 rs10596425 AAAG A 7075 PASS INDEL;BAVGPOST=0.968;BRSQ=0.909;LDAF=0.1650;AVGPOST=0.9655;RSQ=0.9212;ERATE=0.0030;THETA=0.0009;AC=354;AN=2184 GT:DS:GL:BD 0.16208792 0 1 62881008 . AG A 7383 PASS INDEL;BAVGPOST=0.966;BRSQ=0.904;LDAF=0.1725;AVGPOST=0.9647;RSQ=0.9201;ERATE=0.0048;THETA=0.0008;AC=368;AN=2184 GT:DS:GL:BD 0.16849817 0 1 62881197 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2042;AVGPOST=0.9968;RSQ=0.9935;ERATE=0.0007;THETA=0.0012;AC=447;AN=2184 GT:DS:GL:BD 0.20467032 0 1 62881257 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62881327 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.971;LDAF=0.0646;AVGPOST=0.9955;RSQ=0.9705;ERATE=0.0003;THETA=0.0011;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 62881358 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0199;AVGPOST=0.9980;RSQ=0.9612;ERATE=0.0006;THETA=0.0010;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 62881399 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.574;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.4929;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62881681 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0349;AVGPOST=0.9973;RSQ=0.9747;ERATE=0.0003;THETA=0.0004;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 62881949 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.6634;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62881982 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.757;LDAF=0.0068;AVGPOST=0.9949;RSQ=0.6991;ERATE=0.0006;THETA=0.0011;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62882079 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0345;AVGPOST=0.9981;RSQ=0.9799;ERATE=0.0005;THETA=0.0005;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 62882114 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0235;AVGPOST=0.9985;RSQ=0.9777;ERATE=0.0004;THETA=0.0009;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 62882603 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.968;LDAF=0.7428;AVGPOST=0.9383;RSQ=0.8831;ERATE=0.0051;THETA=0.0006;AC=1643;AN=2184 GT:DS:GL:BD 0.75228935 1 1 62882911 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.598;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7269;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62882917 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5055;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62882918 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0030;AVGPOST=0.9992;RSQ=0.8708;ERATE=0.0004;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62882936 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.6937;ERATE=0.0009;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62883134 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0053;AVGPOST=0.9991;RSQ=0.9237;ERATE=0.0004;THETA=0.0047;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62883220 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9654;ERATE=0.0004;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62883259 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62883313 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9559;ERATE=0.0004;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62883367 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.8103;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62883476 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0054;AVGPOST=0.9993;RSQ=0.9380;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62883494 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6174;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62883555 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0062;AVGPOST=0.9992;RSQ=0.9426;ERATE=0.0004;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62883715 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9035;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62883956 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8455;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62884023 . G GT 561 PASS INDEL;BAVGPOST=0.942;BRSQ=0.540;LDAF=0.1036;AVGPOST=0.8813;RSQ=0.4565;ERATE=0.0350;THETA=0.0008;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 62884177 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0061;AVGPOST=0.9986;RSQ=0.9071;ERATE=0.0005;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62884331 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62884398 . CTA C 5394 PASS INDEL;BAVGPOST=0.998;BRSQ=0.971;LDAF=0.0278;AVGPOST=0.9969;RSQ=0.9611;ERATE=0.0004;THETA=0.0006;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 62884419 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8367;ERATE=0.0004;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62884455 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.7184;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62884500 . T TA 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6252;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62884501 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62884614 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6144;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62884653 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5674;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62884663 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62884717 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0177;AVGPOST=0.9973;RSQ=0.9489;ERATE=0.0003;THETA=0.0043;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62884722 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.720;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8449;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62884866 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0020;AVGPOST=0.9978;RSQ=0.5657;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62884874 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.702;LDAF=0.0026;AVGPOST=0.9974;RSQ=0.6006;ERATE=0.0007;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62884879 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0028;AVGPOST=0.9976;RSQ=0.6788;ERATE=0.0005;THETA=0.0017;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62884891 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7726;ERATE=0.0006;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62884991 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0172;AVGPOST=0.9985;RSQ=0.9708;ERATE=0.0004;THETA=0.0011;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62885079 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.789;LDAF=0.0017;AVGPOST=0.9986;RSQ=0.6786;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62885104 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1057;AVGPOST=0.9984;RSQ=0.9927;ERATE=0.0003;THETA=0.0004;AC=230;AN=2184 GT:DS:GL:BD 0.10531136 0 1 62885154 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.8983;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62885168 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7209;ERATE=0.0005;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62885209 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62885370 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8802;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62885422 . T TGA 60 PASS INDEL;BAVGPOST=0.998;BRSQ=0.803;LDAF=0.0087;AVGPOST=0.9927;RSQ=0.6676;ERATE=0.0033;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62885683 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5567;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62885703 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2098;AVGPOST=0.9986;RSQ=0.9969;ERATE=0.0005;THETA=0.0010;AC=458;AN=2184 GT:DS:GL:BD 0.20970696 0 1 62885741 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62885759 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5926;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62885847 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0037;AVGPOST=1.0000;RSQ=0.9941;ERATE=0.0003;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62885921 . ATGT A 4684 PASS INDEL;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0229;AVGPOST=0.9982;RSQ=0.9689;ERATE=0.0003;THETA=0.0009;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 62885957 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0007;AVGPOST=0.9992;RSQ=0.5074;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62886105 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9341;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62886166 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6125;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62886168 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0044;AVGPOST=0.9987;RSQ=0.9122;ERATE=0.0003;THETA=0.0010;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62886169 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62886190 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8894;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62886203 . ATTG A 25 PASS INDEL;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62886383 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.673;LDAF=0.0051;AVGPOST=0.9965;RSQ=0.7206;ERATE=0.0005;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62886457 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0021;AVGPOST=0.9976;RSQ=0.5136;ERATE=0.0007;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62886595 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.824;LDAF=0.0168;AVGPOST=0.9940;RSQ=0.8614;ERATE=0.0004;THETA=0.0007;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62886924 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0340;AVGPOST=0.9982;RSQ=0.9829;ERATE=0.0003;THETA=0.0008;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 62886946 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6083;ERATE=0.0004;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62887071 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0205;AVGPOST=0.9987;RSQ=0.9766;ERATE=0.0003;THETA=0.0006;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 62887084 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7811;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62887131 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0030;AVGPOST=0.9985;RSQ=0.8011;ERATE=0.0006;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62887249 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0039;AVGPOST=0.9977;RSQ=0.7341;ERATE=0.0006;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62887289 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.1283;AVGPOST=0.9982;RSQ=0.9935;ERATE=0.0003;THETA=0.0006;AC=280;AN=2184 GT:DS:GL:BD 0.12820514 0 1 62887295 . G GA 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7548;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62887384 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0037;AVGPOST=0.9973;RSQ=0.7538;ERATE=0.0004;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62887562 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7091;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62887620 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.5871;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62887667 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62887843 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0080;AVGPOST=0.9952;RSQ=0.7603;ERATE=0.0005;THETA=0.0011;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62888181 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.968;LDAF=0.0266;AVGPOST=0.9979;RSQ=0.9683;ERATE=0.0004;THETA=0.0003;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 62888325 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.521;LDAF=0.0140;AVGPOST=0.9769;RSQ=0.3846;ERATE=0.0022;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62888423 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0217;AVGPOST=0.9994;RSQ=0.9866;ERATE=0.0004;THETA=0.0010;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 62888443 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.7072;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62888578 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0166;AVGPOST=0.9997;RSQ=0.9912;ERATE=0.0003;THETA=0.0010;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62888587 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.7041;ERATE=0.0005;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62888654 . GT G 598 PASS INDEL;BAVGPOST=0.994;BRSQ=0.827;LDAF=0.0060;AVGPOST=0.9976;RSQ=0.8352;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62888671 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.945;LDAF=0.0253;AVGPOST=0.9959;RSQ=0.9435;ERATE=0.0004;THETA=0.0005;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 62888692 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=0.9981;RSQ=0.8752;ERATE=0.0004;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62888820 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.926;LDAF=0.0351;AVGPOST=0.9857;RSQ=0.8411;ERATE=0.0012;THETA=0.0013;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 62888833 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0038;AVGPOST=0.9984;RSQ=0.7948;ERATE=0.0005;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62888967 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.912;LDAF=0.0099;AVGPOST=0.9977;RSQ=0.9003;ERATE=0.0007;THETA=0.0011;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62889084 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0168;AVGPOST=0.9992;RSQ=0.9787;ERATE=0.0004;THETA=0.0016;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62889166 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0021;AVGPOST=0.9983;RSQ=0.6173;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62889223 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.750;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5510;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62889278 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.776;LDAF=0.0031;AVGPOST=0.9983;RSQ=0.7609;ERATE=0.0005;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62889377 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62889399 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.669;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6611;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62889434 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.949;LDAF=0.0312;AVGPOST=0.9931;RSQ=0.9084;ERATE=0.0003;THETA=0.0008;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 62889438 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0103;AVGPOST=0.9952;RSQ=0.8181;ERATE=0.0006;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62889453 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7093;ERATE=0.0004;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62889463 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7300;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62889556 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62889688 rs112355325 T TG 25989 PASS INDEL;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.2103;AVGPOST=0.9928;RSQ=0.9860;ERATE=0.0007;THETA=0.0018;AC=459;AN=2184 GT:DS:GL:BD 0.21016483 0 1 62889713 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9871;ERATE=0.0003;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62889772 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4262;ERATE=0.0003;THETA=0.0075;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62889794 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9385;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62889825 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1260;AVGPOST=0.9978;RSQ=0.9932;ERATE=0.0003;THETA=0.0035;AC=273;AN=2184 GT:DS:GL:BD 0.12500000 0 1 62889830 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8675;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62889831 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8860;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62889875 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8281;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62889995 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62890111 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6078;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62890221 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0166;AVGPOST=0.9997;RSQ=0.9910;ERATE=0.0003;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62890274 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0067;AVGPOST=0.9994;RSQ=0.9585;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62890304 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.949;LDAF=0.0103;AVGPOST=0.9979;RSQ=0.9252;ERATE=0.0003;THETA=0.0008;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62890345 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62890352 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0043;AVGPOST=0.9988;RSQ=0.8814;ERATE=0.0005;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62890446 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.9100;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62890472 rs113469699 AGTG A 296 PASS INDEL;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8923;ERATE=0.0004;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62890510 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0174;AVGPOST=0.9999;RSQ=0.9963;ERATE=0.0003;THETA=0.0010;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 62890789 rs34186591 TA T 554 PASS INDEL;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0054;AVGPOST=0.9992;RSQ=0.9411;ERATE=0.0005;THETA=0.0012;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62890793 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.4994;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62890887 . A AG 12 PASS INDEL;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6701;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62890891 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7317;ERATE=0.0006;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62890951 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0164;AVGPOST=0.9999;RSQ=0.9963;ERATE=0.0003;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62891011 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8124;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62891105 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7740;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62891189 . TC T 80 PASS INDEL;BAVGPOST=1.000;BRSQ=0.682;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.4666;ERATE=0.0006;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62891306 . T TA 260 PASS INDEL;BAVGPOST=0.953;BRSQ=0.495;LDAF=0.0799;AVGPOST=0.8995;RSQ=0.4259;ERATE=0.0252;THETA=0.0010;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 62891354 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.963;LDAF=0.0209;AVGPOST=0.9963;RSQ=0.9332;ERATE=0.0004;THETA=0.0008;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 62891380 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.964;LDAF=0.0537;AVGPOST=0.9939;RSQ=0.9530;ERATE=0.0005;THETA=0.0006;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 62891737 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0037;AVGPOST=0.9970;RSQ=0.6898;ERATE=0.0005;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62891825 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3754;AVGPOST=0.9928;RSQ=0.9880;ERATE=0.0007;THETA=0.0005;AC=820;AN=2184 GT:DS:GL:BD 0.37545788 0 1 62891924 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0091;AVGPOST=0.9991;RSQ=0.9542;ERATE=0.0004;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62891926 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.753;LDAF=0.0025;AVGPOST=0.9978;RSQ=0.6363;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62892057 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0047;AVGPOST=0.9992;RSQ=0.9245;ERATE=0.0004;THETA=0.0012;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62892082 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3561;AVGPOST=0.9889;RSQ=0.9826;ERATE=0.0031;THETA=0.0004;AC=774;AN=2184 GT:DS:GL:BD 0.35439560 0 1 62892093 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0049;AVGPOST=0.9992;RSQ=0.9350;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62892118 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8155;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62892154 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.6121;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62892226 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62892228 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.5250;AVGPOST=0.9957;RSQ=0.9929;ERATE=0.0005;THETA=0.0005;AC=1147;AN=2184 GT:DS:GL:BD 0.52518314 1 1 62892278 rs35659803 GAA G 2944 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0184;AVGPOST=0.9984;RSQ=0.9655;ERATE=0.0004;THETA=0.0007;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 62892325 . AT A 86 PASS INDEL;BAVGPOST=0.999;BRSQ=0.751;LDAF=0.0037;AVGPOST=0.9960;RSQ=0.5675;ERATE=0.0006;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62892390 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.7962;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62892431 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.806;LDAF=0.0033;AVGPOST=0.9987;RSQ=0.8194;ERATE=0.0004;THETA=0.0014;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62892442 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5682;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62892449 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0438;AVGPOST=0.9980;RSQ=0.9808;ERATE=0.0003;THETA=0.0005;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 62892455 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0019;AVGPOST=0.9975;RSQ=0.5624;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62892532 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4641;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62892533 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0112;AVGPOST=0.9992;RSQ=0.9700;ERATE=0.0004;THETA=0.0002;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62892607 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62892629 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0166;AVGPOST=0.9996;RSQ=0.9898;ERATE=0.0003;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62892665 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6941;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62892903 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0060;AVGPOST=0.9983;RSQ=0.8765;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62892941 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0334;AVGPOST=0.9979;RSQ=0.9784;ERATE=0.0003;THETA=0.0003;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 62893009 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9316;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62893073 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.797;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62893094 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0088;AVGPOST=0.9988;RSQ=0.9374;ERATE=0.0004;THETA=0.0010;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62893116 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.3730;AVGPOST=0.9978;RSQ=0.9959;ERATE=0.0006;THETA=0.0004;AC=816;AN=2184 GT:DS:GL:BD 0.37362638 0 1 62893209 rs79396036 A AT 42788 PASS INDEL;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.4912;AVGPOST=0.9833;RSQ=0.9749;ERATE=0.0038;THETA=0.0007;AC=1077;AN=2184 GT:DS:GL:BD 0.49313188 0 1 62893221 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0288;AVGPOST=0.9981;RSQ=0.9772;ERATE=0.0003;THETA=0.0003;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 62893237 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7290;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62893349 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0125;AVGPOST=0.9990;RSQ=0.9699;ERATE=0.0005;THETA=0.0002;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 62893361 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0058;AVGPOST=0.9990;RSQ=0.9241;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62893365 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0064;AVGPOST=0.9973;RSQ=0.8262;ERATE=0.0004;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62893531 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4830;AVGPOST=0.9952;RSQ=0.9923;ERATE=0.0005;THETA=0.0005;AC=1059;AN=2184 GT:DS:GL:BD 0.48489010 0 1 62893902 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0166;AVGPOST=0.9996;RSQ=0.9885;ERATE=0.0003;THETA=0.0011;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62893928 . AT A 113 PASS INDEL;BAVGPOST=0.977;BRSQ=0.483;LDAF=0.0402;AVGPOST=0.9479;RSQ=0.4723;ERATE=0.0148;THETA=0.0002;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 62893941 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6589;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62893953 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62894117 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9616;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62894119 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9843;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62894120 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6237;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62894138 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5940;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62894164 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0088;AVGPOST=0.9996;RSQ=0.9800;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62894222 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7239;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62894553 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7079;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62894667 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9654;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62894748 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.895;LDAF=0.0128;AVGPOST=0.9967;RSQ=0.8961;ERATE=0.0005;THETA=0.0002;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62894797 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62894882 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.3730;AVGPOST=0.9957;RSQ=0.9934;ERATE=0.0006;THETA=0.0004;AC=814;AN=2184 GT:DS:GL:BD 0.37271062 0 1 62894890 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7150;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62894908 . TCC T 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.727;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7739;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62894948 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62895019 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62895258 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0068;AVGPOST=0.9978;RSQ=0.8871;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62895282 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0286;AVGPOST=0.9992;RSQ=0.9901;ERATE=0.0003;THETA=0.0003;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 62895327 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7529;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62895391 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0078;AVGPOST=0.9989;RSQ=0.9345;ERATE=0.0004;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62895433 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6548;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62895538 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62895590 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5852;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62895595 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8824;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62895784 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3707;AVGPOST=0.9961;RSQ=0.9933;ERATE=0.0006;THETA=0.0003;AC=810;AN=2184 GT:DS:GL:BD 0.37087911 0 1 62895822 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0326;AVGPOST=0.9985;RSQ=0.9818;ERATE=0.0004;THETA=0.0006;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 62896097 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8303;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62896103 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.8020;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62896109 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62896178 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62896334 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0022;AVGPOST=0.9985;RSQ=0.7407;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62896352 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6776;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62896374 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0017;AVGPOST=0.9987;RSQ=0.6901;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62896379 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6347;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62896419 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5670;AVGPOST=0.9952;RSQ=0.9924;ERATE=0.0014;THETA=0.0005;AC=1239;AN=2184 GT:DS:GL:BD 0.56730771 1 1 62896530 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0023;AVGPOST=0.9998;RSQ=0.9626;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62896570 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62896663 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.9015;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62896753 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=0.9996;RSQ=0.9694;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62896832 . G GT 658 PASS INDEL;BAVGPOST=0.998;BRSQ=0.937;LDAF=0.0089;AVGPOST=0.9973;RSQ=0.8866;ERATE=0.0005;THETA=0.0023;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62897045 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.808;LDAF=0.0055;AVGPOST=0.9985;RSQ=0.9124;ERATE=0.0003;THETA=0.0017;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62897164 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0068;AVGPOST=0.9997;RSQ=0.9826;ERATE=0.0003;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62897262 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0166;AVGPOST=0.9996;RSQ=0.9900;ERATE=0.0003;THETA=0.0002;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62897306 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5931;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62897642 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8938;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62897650 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.863;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8423;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62897774 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0013;AVGPOST=0.9999;RSQ=0.9689;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62897776 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.5619;AVGPOST=0.9952;RSQ=0.9931;ERATE=0.0004;THETA=0.0002;AC=1228;AN=2184 GT:DS:GL:BD 0.56227106 1 1 62897806 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62898005 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62898142 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3712;AVGPOST=0.9963;RSQ=0.9944;ERATE=0.0005;THETA=0.0061;AC=810;AN=2184 GT:DS:GL:BD 0.37087911 0 1 62898169 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6464;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62898202 . TTTTAGTGGAA T 11733 PASS INDEL;BAVGPOST=0.996;BRSQ=0.985;LDAF=0.0625;AVGPOST=0.9946;RSQ=0.9658;ERATE=0.0005;THETA=0.0033;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 62898331 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0095;AVGPOST=0.9991;RSQ=0.9647;ERATE=0.0004;THETA=0.0013;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62898332 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5677;ERATE=0.0003;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62898430 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62898450 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0079;AVGPOST=0.9996;RSQ=0.9748;ERATE=0.0004;THETA=0.0020;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62898519 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6753;ERATE=0.0005;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62898551 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.664;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6431;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62898603 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0405;AVGPOST=0.9986;RSQ=0.9860;ERATE=0.0005;THETA=0.0009;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 62898647 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.962;LDAF=0.0452;AVGPOST=0.9941;RSQ=0.9519;ERATE=0.0012;THETA=0.0055;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 62898890 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0340;AVGPOST=0.9996;RSQ=0.9952;ERATE=0.0003;THETA=0.0016;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 62898928 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5647;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62898975 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0351;AVGPOST=0.9989;RSQ=0.9879;ERATE=0.0003;THETA=0.0003;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 62898984 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.965;LDAF=0.1703;AVGPOST=0.9872;RSQ=0.9664;ERATE=0.0011;THETA=0.0070;AC=373;AN=2184 GT:DS:GL:BD 0.17078754 0 1 62899163 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0065;AVGPOST=0.9998;RSQ=0.9865;ERATE=0.0003;THETA=0.0081;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62899201 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62899253 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7255;ERATE=0.0003;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62899337 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.6042;ERATE=0.0003;THETA=0.0141;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62899406 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.978;LDAF=0.0650;AVGPOST=0.9927;RSQ=0.9584;ERATE=0.0015;THETA=0.0058;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 62899470 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7299;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62899668 . T TG 808 PASS INDEL;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0063;AVGPOST=0.9990;RSQ=0.9377;ERATE=0.0004;THETA=0.0087;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62899669 . A AT 41 PASS INDEL;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0064;AVGPOST=0.9991;RSQ=0.9384;ERATE=0.0003;THETA=0.0062;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62899794 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0645;AVGPOST=0.9980;RSQ=0.9886;ERATE=0.0013;THETA=0.0143;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 62899907 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0954;AVGPOST=0.9985;RSQ=0.9940;ERATE=0.0004;THETA=0.0063;AC=208;AN=2184 GT:DS:GL:BD 0.09523810 0 1 62900128 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0429;AVGPOST=0.9991;RSQ=0.9938;ERATE=0.0003;THETA=0.0007;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 62900232 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6176;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62900247 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7721;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62900289 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0127;AVGPOST=0.9989;RSQ=0.9670;ERATE=0.0004;THETA=0.0008;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62900324 . G GT 65 PASS INDEL;BAVGPOST=0.990;BRSQ=0.546;LDAF=0.0222;AVGPOST=0.9716;RSQ=0.4854;ERATE=0.0040;THETA=0.0008;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62900357 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.738;LDAF=0.0027;AVGPOST=0.9972;RSQ=0.6456;ERATE=0.0004;THETA=0.0031;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62900383 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0147;AVGPOST=0.9985;RSQ=0.9576;ERATE=0.0004;THETA=0.0012;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62900469 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0489;AVGPOST=0.9960;RSQ=0.9677;ERATE=0.0005;THETA=0.0009;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 62900496 . G GT 90 PASS INDEL;BAVGPOST=0.997;BRSQ=0.823;LDAF=0.0056;AVGPOST=0.9965;RSQ=0.7628;ERATE=0.0006;THETA=0.0021;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62900687 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7051;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62900777 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8640;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62900811 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.952;BRSQ=0.926;LDAF=0.4145;AVGPOST=0.9542;RSQ=0.9443;ERATE=0.0008;THETA=0.0012;AC=923;AN=2184 GT:DS:GL:BD 0.42261904 0 1 62900812 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.952;BRSQ=0.927;LDAF=0.4168;AVGPOST=0.9532;RSQ=0.9436;ERATE=0.0011;THETA=0.0011;AC=924;AN=2184 GT:DS:GL:BD 0.42307693 0 1 62900882 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.952;LDAF=0.0503;AVGPOST=0.9958;RSQ=0.9636;ERATE=0.0007;THETA=0.0009;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 62900897 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8639;ERATE=0.0004;THETA=0.0029;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62900900 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.761;LDAF=0.0035;AVGPOST=0.9967;RSQ=0.6528;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62900978 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0473;AVGPOST=0.9990;RSQ=0.9905;ERATE=0.0004;THETA=0.0004;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 62900993 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.3852;ERATE=0.0003;THETA=0.0082;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62901021 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6082;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62901028 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.569;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4134;ERATE=0.0007;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62901071 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.569;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5081;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62901141 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62901156 . TC T 46 PASS INDEL;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0014;AVGPOST=0.9979;RSQ=0.4405;ERATE=0.0005;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62901243 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3795;AVGPOST=0.9989;RSQ=0.9982;ERATE=0.0004;THETA=0.0006;AC=830;AN=2184 GT:DS:GL:BD 0.38003662 0 1 62901249 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.6865;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62901328 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62901345 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0058;AVGPOST=0.9997;RSQ=0.9794;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62901682 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0056;AVGPOST=0.9996;RSQ=0.9650;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62901807 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3797;AVGPOST=0.9980;RSQ=0.9967;ERATE=0.0006;THETA=0.0006;AC=830;AN=2184 GT:DS:GL:BD 0.38003662 0 1 62901912 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0051;AVGPOST=0.9948;RSQ=0.6501;ERATE=0.0005;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62901935 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0087;AVGPOST=0.9986;RSQ=0.9280;ERATE=0.0005;THETA=0.0037;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62902012 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.985;LDAF=0.0324;AVGPOST=0.9979;RSQ=0.9741;ERATE=0.0004;THETA=0.0005;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 62902099 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0063;AVGPOST=0.9962;RSQ=0.7642;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62902458 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.614;LDAF=0.0034;AVGPOST=0.9944;RSQ=0.3220;ERATE=0.0010;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62902874 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.948;LDAF=0.5699;AVGPOST=0.9162;RSQ=0.8833;ERATE=0.0096;THETA=0.0015;AC=1260;AN=2184 GT:DS:GL:BD 0.57692307 1 1 62903032 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.677;LDAF=0.0041;AVGPOST=0.9954;RSQ=0.5732;ERATE=0.0005;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62903090 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.538;LDAF=0.0058;AVGPOST=0.9939;RSQ=0.5753;ERATE=0.0007;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62903304 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.621;LDAF=0.0085;AVGPOST=0.9954;RSQ=0.7770;ERATE=0.0009;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62903359 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.938;LDAF=0.3655;AVGPOST=0.9782;RSQ=0.9689;ERATE=0.0010;THETA=0.0006;AC=803;AN=2184 GT:DS:GL:BD 0.36767399 0 1 62903363 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.941;LDAF=0.3728;AVGPOST=0.9874;RSQ=0.9808;ERATE=0.0009;THETA=0.0006;AC=823;AN=2184 GT:DS:GL:BD 0.37683150 0 1 62903374 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.576;LDAF=0.0042;AVGPOST=0.9967;RSQ=0.6677;ERATE=0.0006;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62903396 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.818;LDAF=0.0116;AVGPOST=0.9948;RSQ=0.8188;ERATE=0.0006;THETA=0.0009;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 62903492 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.5488;ERATE=0.0006;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62903547 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.3777;AVGPOST=0.9969;RSQ=0.9950;ERATE=0.0005;THETA=0.0007;AC=827;AN=2184 GT:DS:GL:BD 0.37866300 0 1 62903594 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0076;AVGPOST=0.9994;RSQ=0.9666;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62903609 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.5349;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62903625 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6883;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62903637 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5646;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62903713 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7094;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62903763 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0146;AVGPOST=0.9991;RSQ=0.9754;ERATE=0.0003;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62903773 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.8986;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62903780 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0040;AVGPOST=0.9979;RSQ=0.8284;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62903890 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7398;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62903979 . CCT C 68 PASS INDEL;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62903984 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8904;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62904130 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6522;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62904295 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3794;AVGPOST=0.9978;RSQ=0.9968;ERATE=0.0004;THETA=0.0006;AC=830;AN=2184 GT:DS:GL:BD 0.38003662 0 1 62904307 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6082;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62904382 rs11381740 A AT 16059 PASS INDEL;BAVGPOST=0.987;BRSQ=0.970;LDAF=0.1895;AVGPOST=0.9752;RSQ=0.9380;ERATE=0.0021;THETA=0.0015;AC=409;AN=2184 GT:DS:GL:BD 0.18727106 0 1 62904519 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0153;AVGPOST=0.9978;RSQ=0.9527;ERATE=0.0003;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62904575 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.3810;AVGPOST=0.9972;RSQ=0.9958;ERATE=0.0009;THETA=0.0008;AC=833;AN=2184 GT:DS:GL:BD 0.38141027 0 1 62904639 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4298;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62904751 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6644;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62904863 . G GT 364 PASS INDEL;BAVGPOST=0.968;BRSQ=0.583;LDAF=0.0708;AVGPOST=0.9149;RSQ=0.4688;ERATE=0.0224;THETA=0.0004;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 62904892 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4400;ERATE=0.0006;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62904918 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0143;AVGPOST=0.9985;RSQ=0.9561;ERATE=0.0005;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62904922 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0021;AVGPOST=0.9977;RSQ=0.5191;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62904929 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.694;LDAF=0.0033;AVGPOST=0.9942;RSQ=0.3026;ERATE=0.0008;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62904936 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.958;LDAF=0.3705;AVGPOST=0.9711;RSQ=0.9601;ERATE=0.0040;THETA=0.0003;AC=818;AN=2184 GT:DS:GL:BD 0.37454212 0 1 62904949 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.694;LDAF=0.0058;AVGPOST=0.9942;RSQ=0.5927;ERATE=0.0006;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62905048 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.688;LDAF=0.0029;AVGPOST=0.9972;RSQ=0.5571;ERATE=0.0008;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62905069 . TG T 111 PASS INDEL;BAVGPOST=0.998;BRSQ=0.673;LDAF=0.0024;AVGPOST=0.9977;RSQ=0.5918;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62905178 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0143;AVGPOST=0.9997;RSQ=0.9912;ERATE=0.0003;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62905297 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6657;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62905335 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62905425 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0471;AVGPOST=0.9999;RSQ=0.9987;ERATE=0.0003;THETA=0.0005;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 62905523 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62905787 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=1.0000;RSQ=0.9921;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62905789 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0046;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62905893 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2874;AVGPOST=0.9986;RSQ=0.9975;ERATE=0.0003;THETA=0.0003;AC=628;AN=2184 GT:DS:GL:BD 0.28754580 0 1 62905922 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62906053 rs59733423 TA T 36 PASS INDEL;BAVGPOST=0.945;BRSQ=0.281;LDAF=0.0816;AVGPOST=0.8951;RSQ=0.4650;ERATE=0.0070;THETA=0.0004;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 62906055 . T TA 69 PASS INDEL;BAVGPOST=0.957;BRSQ=0.092;LDAF=0.0781;AVGPOST=0.8934;RSQ=0.4353;ERATE=0.0044;THETA=0.0005;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 62906089 rs75918749 C CAA 30927 PASS INDEL;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2896;AVGPOST=0.9817;RSQ=0.9681;ERATE=0.0035;THETA=0.0006;AC=632;AN=2184 GT:DS:GL:BD 0.28937730 0 1 62906098 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.831;LDAF=0.0118;AVGPOST=0.9947;RSQ=0.8294;ERATE=0.0005;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62906113 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0025;AVGPOST=0.9976;RSQ=0.6259;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62906161 . TTAAG T 144 PASS INDEL;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0024;AVGPOST=0.9984;RSQ=0.6850;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62906253 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6037;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62906364 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7005;ERATE=0.0003;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62906382 . TTTTG T 128 PASS INDEL;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0028;AVGPOST=0.9986;RSQ=0.7851;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62906383 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0007;AVGPOST=0.9990;RSQ=0.3897;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62906486 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0024;AVGPOST=0.9987;RSQ=0.7693;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62906488 . TG T 4948 PASS INDEL;BAVGPOST=0.861;BRSQ=0.669;LDAF=0.2176;AVGPOST=0.8647;RSQ=0.7357;ERATE=0.0251;THETA=0.0005;AC=443;AN=2184 GT:DS:GL:BD 0.20283882 0 1 62906489 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.971;LDAF=0.3772;AVGPOST=0.9753;RSQ=0.9657;ERATE=0.0077;THETA=0.0004;AC=822;AN=2184 GT:DS:GL:BD 0.37637362 0 1 62906525 . TA T 597 PASS INDEL;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0043;AVGPOST=0.9992;RSQ=0.9170;ERATE=0.0004;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62906537 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3801;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0006;THETA=0.0011;AC=831;AN=2184 GT:DS:GL:BD 0.38049451 0 1 62906626 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.815;LDAF=0.0019;AVGPOST=0.9994;RSQ=0.8612;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62906728 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3813;AVGPOST=0.9974;RSQ=0.9958;ERATE=0.0006;THETA=0.0003;AC=832;AN=2184 GT:DS:GL:BD 0.38095239 0 1 62906868 . CAT C 154 PASS INDEL;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0017;AVGPOST=0.9970;RSQ=0.3891;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62906898 . CTG C 307 PASS INDEL;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0034;AVGPOST=0.9984;RSQ=0.8013;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62906918 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0076;AVGPOST=0.9990;RSQ=0.9523;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62906966 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.8026;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62906999 . G GT 13 PASS INDEL;BAVGPOST=0.999;BRSQ=0.599;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4387;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62907122 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62907130 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62907135 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62907136 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62907148 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62907168 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62907183 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62907557 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62907595 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3826;AVGPOST=0.9995;RSQ=0.9992;ERATE=0.0004;THETA=0.0004;AC=836;AN=2184 GT:DS:GL:BD 0.38278389 0 1 62907610 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0075;AVGPOST=0.9995;RSQ=0.9690;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62907611 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9882;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62907762 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62907826 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62907883 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0189;AVGPOST=0.9996;RSQ=0.9921;ERATE=0.0003;THETA=0.0004;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 62908187 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7882;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62908234 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0035;AVGPOST=0.9991;RSQ=0.8898;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62908235 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3826;AVGPOST=0.9982;RSQ=0.9972;ERATE=0.0004;THETA=0.0006;AC=835;AN=2184 GT:DS:GL:BD 0.38232601 0 1 62908292 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.979;LDAF=0.0324;AVGPOST=0.9979;RSQ=0.9765;ERATE=0.0004;THETA=0.0006;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 62908295 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.717;LDAF=0.0029;AVGPOST=0.9979;RSQ=0.7286;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62908386 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.929;LDAF=0.0851;AVGPOST=0.9877;RSQ=0.9479;ERATE=0.0005;THETA=0.0003;AC=186;AN=2184 GT:DS:GL:BD 0.08516484 0 1 62908396 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.8995;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62908501 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8704;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62908531 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8665;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62908538 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3805;AVGPOST=0.9985;RSQ=0.9975;ERATE=0.0004;THETA=0.0008;AC=831;AN=2184 GT:DS:GL:BD 0.38049451 0 1 62908682 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62908818 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8313;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62909051 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.8033;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62909221 . TA T 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7072;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62909238 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62909311 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7362;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62909419 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62909540 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.6142;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62909552 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.610;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5281;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62909558 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6377;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62909582 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62909708 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0144;AVGPOST=0.9995;RSQ=0.9825;ERATE=0.0004;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62909727 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0034;AVGPOST=0.9992;RSQ=0.8942;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62909788 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5276;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62909822 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0047;AVGPOST=0.9957;RSQ=0.6670;ERATE=0.0004;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62909862 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6770;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62909948 . AAAAG A 10060 PASS INDEL;BAVGPOST=0.923;BRSQ=0.843;LDAF=0.3021;AVGPOST=0.8885;RSQ=0.7998;ERATE=0.0250;THETA=0.0006;AC=651;AN=2184 GT:DS:GL:BD 0.29807693 0 1 62909950 rs56381609 AAG A 13359 PASS INDEL;BAVGPOST=0.948;BRSQ=0.907;LDAF=0.3505;AVGPOST=0.9451;RSQ=0.9158;ERATE=0.0040;THETA=0.0008;AC=758;AN=2184 GT:DS:GL:BD 0.34706959 0 1 62909951 rs56381609 AG A 12834 PASS INDEL;BAVGPOST=0.966;BRSQ=0.945;LDAF=0.3692;AVGPOST=0.9745;RSQ=0.9619;ERATE=0.0012;THETA=0.0017;AC=813;AN=2184 GT:DS:GL:BD 0.37225273 0 1 62909974 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0308;AVGPOST=0.9994;RSQ=0.9916;ERATE=0.0004;THETA=0.0006;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 62909999 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0306;AVGPOST=0.9999;RSQ=0.9987;ERATE=0.0003;THETA=0.0011;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 62910082 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62910113 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0031;AVGPOST=0.9991;RSQ=0.9034;ERATE=0.0003;THETA=0.0029;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62910139 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8151;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62910176 . ATTAG A 236 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8088;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62910224 . TAG T 234 PASS INDEL;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.5538;ERATE=0.0005;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62910265 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7301;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62910312 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0471;AVGPOST=0.9999;RSQ=0.9986;ERATE=0.0003;THETA=0.0005;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 62910325 . CCT C 307 PASS INDEL;BAVGPOST=0.997;BRSQ=0.743;LDAF=0.0063;AVGPOST=0.9959;RSQ=0.7598;ERATE=0.0006;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62910509 . AAAG A 196 PASS INDEL;BAVGPOST=0.998;BRSQ=0.711;LDAF=0.0049;AVGPOST=0.9966;RSQ=0.7269;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62910612 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62910820 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62910824 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.8166;ERATE=0.0021;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62910834 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62910901 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62910957 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62910981 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62910997 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62911046 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62911116 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62911191 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0161;AVGPOST=0.9995;RSQ=0.9853;ERATE=0.0003;THETA=0.0011;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62911241 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8424;ERATE=0.0007;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62911267 . TTAGTGTG T 1317 PASS INDEL;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0044;AVGPOST=0.9994;RSQ=0.9324;ERATE=0.0004;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62911271 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0471;AVGPOST=0.9999;RSQ=0.9986;ERATE=0.0003;THETA=0.0006;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 62911303 . G GTGTA 20150 PASS INDEL;BAVGPOST=0.990;BRSQ=0.981;LDAF=0.3654;AVGPOST=0.9890;RSQ=0.9830;ERATE=0.0036;THETA=0.0008;AC=802;AN=2184 GT:DS:GL:BD 0.36721611 0 1 62911341 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3802;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0004;THETA=0.0012;AC=831;AN=2184 GT:DS:GL:BD 0.38049451 0 1 62911350 . T TA 722 PASS INDEL;BAVGPOST=0.999;BRSQ=0.880;LDAF=0.0050;AVGPOST=0.9988;RSQ=0.8895;ERATE=0.0005;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62911478 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.913;LDAF=0.0287;AVGPOST=0.9883;RSQ=0.8362;ERATE=0.0009;THETA=0.0021;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 62911479 . GTC G 188 PASS INDEL;BAVGPOST=0.999;BRSQ=0.731;LDAF=0.0029;AVGPOST=0.9959;RSQ=0.4302;ERATE=0.0008;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62911522 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.874;LDAF=0.0162;AVGPOST=0.9954;RSQ=0.8862;ERATE=0.0006;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62911612 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0012;AVGPOST=0.9980;RSQ=0.3335;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62911629 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0076;AVGPOST=0.9976;RSQ=0.8843;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62911644 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.682;LDAF=0.0047;AVGPOST=0.9972;RSQ=0.7580;ERATE=0.0005;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62911659 . AC A 1578 PASS INDEL;BAVGPOST=0.998;BRSQ=0.930;LDAF=0.0135;AVGPOST=0.9966;RSQ=0.9085;ERATE=0.0004;THETA=0.0010;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62911703 . A AT 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.5259;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62911724 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.944;LDAF=0.0098;AVGPOST=0.9983;RSQ=0.9338;ERATE=0.0004;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 62911751 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3498;AVGPOST=0.9984;RSQ=0.9971;ERATE=0.0005;THETA=0.0008;AC=763;AN=2184 GT:DS:GL:BD 0.34935898 0 1 62911787 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6037;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62911823 . TG T 6527 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0473;AVGPOST=0.9995;RSQ=0.9958;ERATE=0.0003;THETA=0.0004;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 62911996 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4649;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62912020 . A AT 38 PASS INDEL;BAVGPOST=0.994;BRSQ=0.675;LDAF=0.0213;AVGPOST=0.9767;RSQ=0.5520;ERATE=0.0064;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 62912029 . C CA 77 PASS INDEL;BAVGPOST=1.000;BRSQ=0.693;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4967;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62912101 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62912113 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0020;AVGPOST=0.9992;RSQ=0.8117;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62912120 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3805;AVGPOST=0.9987;RSQ=0.9982;ERATE=0.0003;THETA=0.0005;AC=831;AN=2184 GT:DS:GL:BD 0.38049451 0 1 62912187 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7379;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62912197 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8496;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62912247 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9999;AVGPOST=0.9998;RSQ=0.0498;ERATE=0.0003;THETA=0.0005;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 62912500 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0021;AVGPOST=0.9973;RSQ=0.5652;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62912559 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.685;LDAF=0.0031;AVGPOST=0.9972;RSQ=0.6076;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62912653 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.931;LDAF=0.0388;AVGPOST=0.9888;RSQ=0.8891;ERATE=0.0004;THETA=0.0005;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 62912671 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62912747 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0039;AVGPOST=0.9984;RSQ=0.8619;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62912870 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9830;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62912899 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62912919 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2876;AVGPOST=0.9998;RSQ=0.9995;ERATE=0.0003;THETA=0.0006;AC=628;AN=2184 GT:DS:GL:BD 0.28754580 0 1 62913185 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62913311 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62913326 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8824;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62913444 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9236;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62913466 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0048;AVGPOST=0.9971;RSQ=0.7601;ERATE=0.0014;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62913568 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0145;AVGPOST=0.9991;RSQ=0.9710;ERATE=0.0004;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62913582 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0033;AVGPOST=0.9970;RSQ=0.6498;ERATE=0.0005;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62913693 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.940;LDAF=0.1750;AVGPOST=0.9748;RSQ=0.9293;ERATE=0.0006;THETA=0.0007;AC=384;AN=2184 GT:DS:GL:BD 0.17582418 0 1 62913808 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0025;AVGPOST=0.9992;RSQ=0.8557;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62913810 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9449;ERATE=0.0006;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62913923 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62913958 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7089;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62914039 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0411;AVGPOST=0.9992;RSQ=0.9924;ERATE=0.0006;THETA=0.0006;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 62914080 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62914150 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62914153 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9667;ERATE=0.0010;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62914209 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62914392 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 62914532 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0469;AVGPOST=0.9996;RSQ=0.9967;ERATE=0.0003;THETA=0.0005;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 62914575 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6913;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62914744 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0023;AVGPOST=0.9983;RSQ=0.6911;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62914971 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.661;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5815;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62914978 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3796;AVGPOST=0.9982;RSQ=0.9971;ERATE=0.0004;THETA=0.0007;AC=830;AN=2184 GT:DS:GL:BD 0.38003662 0 1 62914988 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5992;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62914995 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.640;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.6603;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62915354 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.817;LDAF=0.0019;AVGPOST=0.9983;RSQ=0.6463;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62915399 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.930;LDAF=0.0158;AVGPOST=0.9977;RSQ=0.9345;ERATE=0.0003;THETA=0.0007;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62915409 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0082;AVGPOST=0.9983;RSQ=0.9207;ERATE=0.0003;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 62915443 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.549;LDAF=0.0210;AVGPOST=0.9751;RSQ=0.5405;ERATE=0.0057;THETA=0.0006;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 62915451 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0309;AVGPOST=0.9988;RSQ=0.9840;ERATE=0.0004;THETA=0.0005;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 62915473 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3024;AVGPOST=0.9984;RSQ=0.9970;ERATE=0.0005;THETA=0.0019;AC=660;AN=2184 GT:DS:GL:BD 0.30219781 0 1 62915614 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7550;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62915773 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9804;ERATE=0.0003;THETA=0.0036;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62915858 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62915977 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8916;ERATE=0.0007;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62915986 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62916280 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62916310 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62916503 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62916662 . A AT 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5675;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62916701 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62916704 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0133;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 62916781 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62916796 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3796;AVGPOST=0.9990;RSQ=0.9985;ERATE=0.0003;THETA=0.0007;AC=830;AN=2184 GT:DS:GL:BD 0.38003662 0 1 62917107 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7548;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62917116 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0027;AVGPOST=0.9990;RSQ=0.8526;ERATE=0.0003;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62917472 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62917545 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.740;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62917583 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8407;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62917634 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62917720 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.457;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4497;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62917772 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.813;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62917796 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3852;AVGPOST=0.9933;RSQ=0.9900;ERATE=0.0026;THETA=0.0006;AC=842;AN=2184 GT:DS:GL:BD 0.38553113 0 1 62917836 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7579;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62917857 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3818;AVGPOST=0.9969;RSQ=0.9953;ERATE=0.0006;THETA=0.0006;AC=835;AN=2184 GT:DS:GL:BD 0.38232601 0 1 62917865 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3788;AVGPOST=0.9963;RSQ=0.9950;ERATE=0.0004;THETA=0.0004;AC=829;AN=2184 GT:DS:GL:BD 0.37957877 0 1 62917878 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4606;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62917899 . A AT 57 PASS INDEL;BAVGPOST=0.999;BRSQ=0.726;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5922;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62917913 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.972;LDAF=0.0904;AVGPOST=0.9916;RSQ=0.9605;ERATE=0.0006;THETA=0.0010;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 62917926 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0065;AVGPOST=0.9987;RSQ=0.9170;ERATE=0.0005;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62917927 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.514;LDAF=0.0031;AVGPOST=0.9966;RSQ=0.5585;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62917931 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.664;LDAF=0.0046;AVGPOST=0.9960;RSQ=0.6618;ERATE=0.0005;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62917938 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5799;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62917982 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.978;LDAF=0.0306;AVGPOST=0.9993;RSQ=0.9906;ERATE=0.0004;THETA=0.0005;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 62918010 . C CTA 566 PASS INDEL;BAVGPOST=0.999;BRSQ=0.844;LDAF=0.0050;AVGPOST=0.9962;RSQ=0.7377;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62918106 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0027;AVGPOST=0.9982;RSQ=0.7079;ERATE=0.0006;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62918230 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.771;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7645;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62918250 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4815;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62918380 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0146;AVGPOST=0.9992;RSQ=0.9758;ERATE=0.0003;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62918449 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0031;AVGPOST=0.9994;RSQ=0.9257;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62918530 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7301;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62918544 . ATCAT A 2162 PASS INDEL;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0117;AVGPOST=0.9991;RSQ=0.9732;ERATE=0.0004;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62918675 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0011;AVGPOST=0.9984;RSQ=0.4718;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62918864 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3803;AVGPOST=0.9984;RSQ=0.9974;ERATE=0.0004;THETA=0.0027;AC=831;AN=2184 GT:DS:GL:BD 0.38049451 0 1 62918931 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.843;LDAF=0.0071;AVGPOST=0.9976;RSQ=0.8898;ERATE=0.0003;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62918937 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0028;AVGPOST=0.9986;RSQ=0.8050;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62918943 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8847;ERATE=0.0004;THETA=0.0015;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 62918951 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62918953 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0044;AVGPOST=0.9996;RSQ=0.9616;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62918964 . AT A 396 PASS INDEL;BAVGPOST=0.999;BRSQ=0.730;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62919016 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6612;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62919042 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.718;LDAF=0.0066;AVGPOST=0.9945;RSQ=0.6949;ERATE=0.0010;THETA=0.0023;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62919303 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62919357 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.1765;AVGPOST=0.9868;RSQ=0.9630;ERATE=0.0005;THETA=0.0004;AC=383;AN=2184 GT:DS:GL:BD 0.17536630 0 1 62919373 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0138;AVGPOST=0.9991;RSQ=0.9764;ERATE=0.0004;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 62919597 rs60586638 T TTA 6431 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0476;AVGPOST=0.9987;RSQ=0.9875;ERATE=0.0006;THETA=0.0004;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 62919645 . A AGAT 1119 PASS INDEL;BAVGPOST=0.990;BRSQ=0.883;LDAF=0.0360;AVGPOST=0.9863;RSQ=0.8577;ERATE=0.0004;THETA=0.0004;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 62919655 . T TAG 224 PASS INDEL;BAVGPOST=0.985;BRSQ=0.774;LDAF=0.0355;AVGPOST=0.9852;RSQ=0.8403;ERATE=0.0004;THETA=0.0004;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 62919978 rs71799417 C CAT 36066 PASS INDEL;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.3069;AVGPOST=0.9939;RSQ=0.9894;ERATE=0.0010;THETA=0.0007;AC=672;AN=2184 GT:DS:GL:BD 0.30769232 0 1 62920001 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5608;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62920008 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3182;AVGPOST=0.9970;RSQ=0.9949;ERATE=0.0004;THETA=0.0003;AC=694;AN=2184 GT:DS:GL:BD 0.31776556 0 1 62920029 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3797;AVGPOST=0.9971;RSQ=0.9957;ERATE=0.0004;THETA=0.0005;AC=829;AN=2184 GT:DS:GL:BD 0.37957877 0 1 62920089 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9244;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62920271 . A AAGAT 577 PASS INDEL;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0053;AVGPOST=0.9992;RSQ=0.9315;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62920326 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0158;AVGPOST=0.9975;RSQ=0.9459;ERATE=0.0004;THETA=0.0005;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 62920329 . GT G 166 PASS INDEL;BAVGPOST=0.999;BRSQ=0.674;LDAF=0.0022;AVGPOST=0.9973;RSQ=0.5388;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62920345 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.730;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7569;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62920350 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7661;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62920354 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.8957;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62920388 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3795;AVGPOST=0.9974;RSQ=0.9960;ERATE=0.0005;THETA=0.0005;AC=829;AN=2184 GT:DS:GL:BD 0.37957877 0 1 62920556 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.859;LDAF=0.0062;AVGPOST=0.9987;RSQ=0.9248;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 62920579 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5607;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62920731 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6579;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62920764 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0048;AVGPOST=0.9994;RSQ=0.9381;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62920788 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5362;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62920870 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8802;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62920900 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62920930 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62920950 . AT A 106 PASS INDEL;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5922;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62920989 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9998;RSQ=0.9771;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62921096 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62921101 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62921145 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62921146 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 62921149 . ATAGT A 220 PASS INDEL;BAVGPOST=0.998;BRSQ=0.698;LDAF=0.0059;AVGPOST=0.9979;RSQ=0.8561;ERATE=0.0006;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62921158 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62921399 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9119;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62921422 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3813;AVGPOST=0.9970;RSQ=0.9954;ERATE=0.0018;THETA=0.0004;AC=832;AN=2184 GT:DS:GL:BD 0.38095239 0 1 62921448 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5918;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62921470 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62921586 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.2881;AVGPOST=0.9970;RSQ=0.9948;ERATE=0.0004;THETA=0.0007;AC=628;AN=2184 GT:DS:GL:BD 0.28754580 0 1 62921593 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.720;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62921611 . TAA T 6563 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0481;AVGPOST=0.9976;RSQ=0.9798;ERATE=0.0005;THETA=0.0004;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 62921655 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62921798 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8247;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62921980 . TTTAAAC T 168 PASS INDEL;BAVGPOST=0.999;BRSQ=0.557;LDAF=0.0053;AVGPOST=0.9974;RSQ=0.7961;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62922046 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9694;AVGPOST=0.9999;RSQ=0.9987;ERATE=0.0003;THETA=0.0004;AC=2117;AN=2184 GT:DS:GL:BD 0.96932232 1 1 62922218 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6789;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62922321 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0078;AVGPOST=0.9984;RSQ=0.9100;ERATE=0.0005;THETA=0.0011;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 62922350 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0490;AVGPOST=0.9986;RSQ=0.9896;ERATE=0.0003;THETA=0.0006;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 62922389 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=0.9998;RSQ=0.9830;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62922660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2944;AVGPOST=0.9976;RSQ=0.9951;ERATE=0.0006;THETA=0.0005;AC=642;AN=2184 GT:DS:GL:BD 0.29395604 0 1 62922731 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6377;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62922763 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62922943 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.846;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7568;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62922992 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8148;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62923183 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62923334 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0129;AVGPOST=0.9998;RSQ=0.9934;ERATE=0.0003;THETA=0.0008;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 62923381 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62923477 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62923749 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62923800 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0123;AVGPOST=0.9993;RSQ=0.9707;ERATE=0.0006;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 62923858 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.985;LDAF=0.3441;AVGPOST=0.9908;RSQ=0.9859;ERATE=0.0006;THETA=0.0027;AC=755;AN=2184 GT:DS:GL:BD 0.34569597 0 1 62923863 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.987;LDAF=0.2836;AVGPOST=0.9920;RSQ=0.9856;ERATE=0.0005;THETA=0.0003;AC=622;AN=2184 GT:DS:GL:BD 0.28479853 0 1 62923910 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0484;AVGPOST=0.9994;RSQ=0.9948;ERATE=0.0003;THETA=0.0011;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 62923937 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8336;ERATE=0.0004;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62924085 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.713;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7541;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62924203 . TTTG T 14793 PASS INDEL;BAVGPOST=0.875;BRSQ=0.794;LDAF=0.5121;AVGPOST=0.8321;RSQ=0.7586;ERATE=0.0295;THETA=0.0004;AC=1167;AN=2184 GT:DS:GL:BD 0.53434068 1 1 62924204 . TTG T 23346 PASS INDEL;BAVGPOST=0.975;BRSQ=0.959;LDAF=0.6135;AVGPOST=0.9622;RSQ=0.9450;ERATE=0.0050;THETA=0.0010;AC=1345;AN=2184 GT:DS:GL:BD 0.61584246 1 1 62924245 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.6010;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62924348 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0082;AVGPOST=0.9968;RSQ=0.8509;ERATE=0.0005;THETA=0.0011;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62924349 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.640;LDAF=0.0036;AVGPOST=0.9947;RSQ=0.4026;ERATE=0.0012;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62924357 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.614;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8256;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62924394 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0117;AVGPOST=0.9991;RSQ=0.9716;ERATE=0.0003;THETA=0.0008;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 62924437 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.709;LDAF=0.0063;AVGPOST=0.9955;RSQ=0.7221;ERATE=0.0006;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62924448 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.970;LDAF=0.3466;AVGPOST=0.9709;RSQ=0.9541;ERATE=0.0035;THETA=0.0026;AC=754;AN=2184 GT:DS:GL:BD 0.34523809 0 1 62924498 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0019;AVGPOST=0.9975;RSQ=0.5400;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62924572 . TGACA T 94 PASS INDEL;BAVGPOST=0.999;BRSQ=0.844;LDAF=0.0051;AVGPOST=0.9951;RSQ=0.6501;ERATE=0.0011;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62924614 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62924616 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5552;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62924869 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6684;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62924972 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5910;ERATE=0.0006;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62925212 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.9856;AVGPOST=0.9995;RSQ=0.9856;ERATE=0.0003;THETA=0.0005;AC=2153;AN=2184 GT:DS:GL:BD 0.98580587 1 1 62925224 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6395;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62925277 . AATT A 25 PASS INDEL;BAVGPOST=0.999;BRSQ=0.637;LDAF=0.0040;AVGPOST=0.9982;RSQ=0.7892;ERATE=0.0006;THETA=0.0044;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62925365 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.9733;AVGPOST=0.9992;RSQ=0.9863;ERATE=0.0007;THETA=0.0024;AC=2126;AN=2184 GT:DS:GL:BD 0.97344321 1 1 62925448 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9993;RSQ=0.8958;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62925499 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0023;AVGPOST=0.9970;RSQ=0.5268;ERATE=0.0004;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62925629 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.658;LDAF=0.0061;AVGPOST=0.9919;RSQ=0.4738;ERATE=0.0015;THETA=0.0018;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62925632 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.706;LDAF=0.9450;AVGPOST=0.9492;RSQ=0.6423;ERATE=0.0065;THETA=0.0012;AC=2090;AN=2184 GT:DS:GL:BD 0.95695972 1 1 62925644 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.657;LDAF=0.0105;AVGPOST=0.9947;RSQ=0.7895;ERATE=0.0006;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 62925684 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0048;AVGPOST=0.9952;RSQ=0.6272;ERATE=0.0007;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 62925727 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.843;LDAF=0.0583;AVGPOST=0.9873;RSQ=0.9195;ERATE=0.0004;THETA=0.0008;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 62925756 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.667;LDAF=0.0046;AVGPOST=0.9926;RSQ=0.3633;ERATE=0.0014;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62925825 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.874;LDAF=0.0583;AVGPOST=0.9822;RSQ=0.8828;ERATE=0.0008;THETA=0.0005;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 62925861 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5488;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62925908 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4448;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62925981 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0062;AVGPOST=0.9995;RSQ=0.9579;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 62926027 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0039;AVGPOST=0.9996;RSQ=0.9526;ERATE=0.0003;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62926057 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6162;AVGPOST=0.9929;RSQ=0.9897;ERATE=0.0011;THETA=0.0004;AC=1343;AN=2184 GT:DS:GL:BD 0.61492676 1 1 62926101 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5736;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62926108 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8915;ERATE=0.0004;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62926202 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0024;AVGPOST=0.9990;RSQ=0.8628;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62926371 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.993;LDAF=0.3568;AVGPOST=0.9930;RSQ=0.9903;ERATE=0.0005;THETA=0.0005;AC=779;AN=2184 GT:DS:GL:BD 0.35668498 0 1 62926579 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0493;AVGPOST=0.9992;RSQ=0.9932;ERATE=0.0003;THETA=0.0005;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 62926715 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0062;AVGPOST=0.9977;RSQ=0.8454;ERATE=0.0005;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62926927 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.750;LDAF=0.0041;AVGPOST=0.9985;RSQ=0.8348;ERATE=0.0005;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62926963 . GAATT G 94 PASS INDEL;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0019;AVGPOST=0.9970;RSQ=0.4514;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62926973 . GTC G 462 PASS INDEL;BAVGPOST=0.998;BRSQ=0.867;LDAF=0.0060;AVGPOST=0.9980;RSQ=0.8649;ERATE=0.0005;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62927017 rs4019579 ATAAG A 2782 PASS INDEL;BAVGPOST=0.987;BRSQ=0.651;LDAF=0.0261;AVGPOST=0.9797;RSQ=0.7066;ERATE=0.0009;THETA=0.0009;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 62927019 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.738;LDAF=0.0035;AVGPOST=0.9952;RSQ=0.4495;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62927037 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6231;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62927261 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=0.9983;RSQ=0.8619;ERATE=0.0005;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 62927318 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.669;LDAF=0.0083;AVGPOST=0.9963;RSQ=0.8165;ERATE=0.0004;THETA=0.0009;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 62927510 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0518;AVGPOST=0.9969;RSQ=0.9720;ERATE=0.0006;THETA=0.0009;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 62927514 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0114;AVGPOST=0.9940;RSQ=0.7876;ERATE=0.0007;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 62927616 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.9779;AVGPOST=0.9900;RSQ=0.8166;ERATE=0.0014;THETA=0.0012;AC=2141;AN=2184 GT:DS:GL:BD 0.98031133 1 1 62927718 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.969;LDAF=0.0519;AVGPOST=0.9972;RSQ=0.9772;ERATE=0.0008;THETA=0.0005;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 62927797 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6182;AVGPOST=0.9947;RSQ=0.9922;ERATE=0.0011;THETA=0.0006;AC=1348;AN=2184 GT:DS:GL:BD 0.61721611 1 1 62927818 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.3930;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62927863 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7641;ERATE=0.0006;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62927915 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0049;AVGPOST=0.9979;RSQ=0.8327;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 62927954 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.766;LDAF=0.0025;AVGPOST=0.9967;RSQ=0.5015;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62928071 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7116;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62928073 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0153;AVGPOST=0.9977;RSQ=0.9386;ERATE=0.0004;THETA=0.0005;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 62928185 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0017;AVGPOST=0.9986;RSQ=0.6736;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62928238 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6669;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62928253 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0490;AVGPOST=0.9997;RSQ=0.9972;ERATE=0.0003;THETA=0.0006;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 62928288 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0033;AVGPOST=0.9985;RSQ=0.8357;ERATE=0.0003;THETA=0.0023;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 62928474 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0079;AVGPOST=0.9980;RSQ=0.9116;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62928549 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2999;AVGPOST=0.9974;RSQ=0.9951;ERATE=0.0004;THETA=0.0008;AC=656;AN=2184 GT:DS:GL:BD 0.30036631 0 1 62928630 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.728;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4486;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62928742 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.9816;AVGPOST=0.9976;RSQ=0.9516;ERATE=0.0005;THETA=0.0006;AC=2144;AN=2184 GT:DS:GL:BD 0.98168498 1 1 62928887 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0020;AVGPOST=0.9982;RSQ=0.6577;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62929102 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.719;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7306;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62929121 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0489;AVGPOST=0.9996;RSQ=0.9966;ERATE=0.0003;THETA=0.0005;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 62929348 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62929378 rs75160723 TA T 22308 PASS INDEL;BAVGPOST=0.994;BRSQ=0.988;LDAF=0.2882;AVGPOST=0.9888;RSQ=0.9789;ERATE=0.0029;THETA=0.0009;AC=624;AN=2184 GT:DS:GL:BD 0.28571430 0 1 62929447 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 62929483 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9244;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62929489 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7195;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62929767 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.907;LDAF=0.0172;AVGPOST=0.9965;RSQ=0.9190;ERATE=0.0004;THETA=0.0009;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 62929794 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.9688;AVGPOST=0.9987;RSQ=0.9824;ERATE=0.0006;THETA=0.0004;AC=2117;AN=2184 GT:DS:GL:BD 0.96932232 1 1 62929812 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0029;AVGPOST=0.9976;RSQ=0.7065;ERATE=0.0005;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 62929892 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.6117;AVGPOST=0.9873;RSQ=0.9816;ERATE=0.0017;THETA=0.0009;AC=1340;AN=2184 GT:DS:GL:BD 0.61355311 1 1 62930079 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0509;AVGPOST=0.9964;RSQ=0.9710;ERATE=0.0007;THETA=0.0012;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 62930106 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.913;LDAF=0.1352;AVGPOST=0.9868;RSQ=0.9573;ERATE=0.0013;THETA=0.0006;AC=295;AN=2184 GT:DS:GL:BD 0.13507326 0 1 62930150 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.390;LDAF=0.0231;AVGPOST=0.9675;RSQ=0.4516;ERATE=0.0026;THETA=0.0002;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 62930173 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.648;LDAF=0.0297;AVGPOST=0.9771;RSQ=0.6943;ERATE=0.0008;THETA=0.0016;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 62930224 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.6107;AVGPOST=0.9846;RSQ=0.9781;ERATE=0.0017;THETA=0.0008;AC=1337;AN=2184 GT:DS:GL:BD 0.61217946 1 1 62930268 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.722;LDAF=0.0164;AVGPOST=0.9891;RSQ=0.7355;ERATE=0.0008;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 62930759 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9997;RSQ=0.9831;ERATE=0.0003;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 62930889 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.9094;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 62930968 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0025;AVGPOST=0.9980;RSQ=0.7012;ERATE=0.0005;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 62931054 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6191;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 62931133 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0045;AVGPOST=0.9980;RSQ=0.8174;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 62931197 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5403;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0