[1] "###############################" [1] "####DENISOVA###########" [1] "###############################" [1] "###############################" [1] "####AFRICAN###########" [1] "###############################" Pearson's product-moment correlation data: PopulationMat[, pop] and DenisovaMat[, 12] t = -56.4529, df = 160586, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: -0.1442896 -0.1346981 sample estimates: cor -0.1394972 [1] "==========0=============" Spearman's rank correlation rho data: PopulationMat[, pop] and DenisovaMat[, 12] S = 7.668769e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho -0.1110603 [1] "==========0=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.2728302 0.3010362 sample estimates: odds ratio 0.2865778 [1] "==========0=============" [1] "###############################" [1] "###############################" [1] "####AD MIX AMERICAN###########" [1] "###############################" Pearson's product-moment correlation data: PopulationMat[, pop] and DenisovaMat[, 12] t = 6.5542, df = 160586, p-value = 5.612e-11 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.01146331 0.02124257 sample estimates: cor 0.01635333 [1] "==========5.61182211811229e-11=============" Spearman's rank correlation rho data: PopulationMat[, pop] and DenisovaMat[, 12] S = 6.432396e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.06806687 [1] "==========3.39058095481196e-164=============" Fisher's Exact Test for Count Data data: conf p-value = 0.00386 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 1.030197 1.168999 sample estimates: odds ratio 1.097818 [1] "==========0.00386031424922727=============" [1] "###############################" [1] "###############################" [1] "####ASIAN###########" [1] "###############################" Pearson's product-moment correlation data: PopulationMat[, pop] and DenisovaMat[, 12] t = 62.7879, df = 160586, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.1500172 0.1595647 sample estimates: cor 0.1547945 [1] "==========0=============" Spearman's rank correlation rho data: PopulationMat[, pop] and DenisovaMat[, 12] S = 5.98753e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.1325196 [1] "==========0=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 4.423302 4.958965 sample estimates: odds ratio 4.684225 [1] "==========0=============" [1] "###############################" [1] "###############################" [1] "####EUROPEAN###########" [1] "###############################" Pearson's product-moment correlation data: PopulationMat[, pop] and DenisovaMat[, 12] t = 29.9623, df = 160586, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.06969533 0.07942282 sample estimates: cor 0.07456085 [1] "==========0=============" Spearman's rank correlation rho data: PopulationMat[, pop] and DenisovaMat[, 12] S = 6.245234e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.09518311 [1] "==========0=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 2.185612 2.455974 sample estimates: odds ratio 2.317433 [1] "==========2.77530242252935e-152=============" [1] "###############################" [1] "###############################" [1] "####NEANDERTAL###########" [1] "###############################" [1] "###############################" [1] "####AFRICAN###########" [1] "###############################" Pearson's product-moment correlation data: PopulationMat[, pop] and NeanderMat[, 12] t = -161.1011, df = 160586, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: -0.3772065 -0.3687855 sample estimates: cor -0.3730037 [1] "==========0=============" Spearman's rank correlation rho data: PopulationMat[, pop] and NeanderMat[, 12] S = 8.28276e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho -0.200016 [1] "==========0=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.06373279 0.06931534 sample estimates: odds ratio 0.06647877 [1] "==========0=============" [1] "###############################" [1] "###############################" [1] "####AD MIX AMERICAN###########" [1] "###############################" Pearson's product-moment correlation data: PopulationMat[, pop] and NeanderMat[, 12] t = 33.8106, df = 160586, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.07921509 0.08892783 sample estimates: cor 0.08407346 [1] "==========0=============" Spearman's rank correlation rho data: PopulationMat[, pop] and NeanderMat[, 12] S = 6.153966e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.1084062 [1] "==========0=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 2.056667 2.268687 sample estimates: odds ratio 2.16057 [1] "==========2.55989026704698e-185=============" [1] "###############################" [1] "###############################" [1] "####ASIAN###########" [1] "###############################" Pearson's product-moment correlation data: PopulationMat[, pop] and NeanderMat[, 12] t = 135.5229, df = 160586, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.3159682 0.3247462 sample estimates: cor 0.3203641 [1] "==========0=============" Spearman's rank correlation rho data: PopulationMat[, pop] and NeanderMat[, 12] S = 5.315652e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.2298621 [1] "==========0=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 13.36977 14.78596 sample estimates: odds ratio 14.05683 [1] "==========0=============" [1] "###############################" [1] "###############################" [1] "####EUROPEAN###########" [1] "###############################" Pearson's product-moment correlation data: PopulationMat[, pop] and NeanderMat[, 12] t = 108.2106, df = 160586, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.2561306 0.2652477 sample estimates: cor 0.260695 [1] "==========0=============" Spearman's rank correlation rho data: PopulationMat[, pop] and NeanderMat[, 12] S = 5.567658e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.1933511 [1] "==========0=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 7.182681 7.864227 sample estimates: odds ratio 7.516188 [1] "==========0=============" [1] "###############################" [1] "###############################" [1] "####ANCESTOR###########" [1] "###############################" [1] "###############################" [1] "####AFRICAN###########" [1] "###############################" Pearson's product-moment correlation data: PopulationMat[, pop] and AncestMat[, 12] t = -11.9338, df = 160586, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: -0.03465282 -0.02487961 sample estimates: cor -0.02976693 [1] "==========8.14103892530757e-33=============" Spearman's rank correlation rho data: PopulationMat[, pop] and AncestMat[, 12] S = 7.350685e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho -0.06497597 [1] "==========8.99096612863471e-150=============" Fisher's Exact Test for Count Data data: conf p-value = 9.979e-07 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.8006987 0.9088270 sample estimates: odds ratio 0.8527671 [1] "==========9.97889947313013e-07=============" [1] "###############################" [1] "###############################" [1] "####AD MIX AMERICAN###########" [1] "###############################" Pearson's product-moment correlation data: PopulationMat[, pop] and AncestMat[, 12] t = 2.2428, df = 160586, p-value = 0.02491 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.000705738 0.010487307 sample estimates: cor 0.005596656 [1] "==========0.0249114913032598=============" Spearman's rank correlation rho data: PopulationMat[, pop] and AncestMat[, 12] S = 6.491157e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.05955349 [1] "==========4.26724233215597e-126=============" Fisher's Exact Test for Count Data data: conf p-value = 0.3122 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.9083906 1.0305698 sample estimates: odds ratio 0.9678758 [1] "==========0.312184321923054=============" [1] "###############################" [1] "###############################" [1] "####ASIAN###########" [1] "###############################" Pearson's product-moment correlation data: PopulationMat[, pop] and AncestMat[, 12] t = 4.077, df = 160586, p-value = 4.564e-05 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.005282727 0.015063591 sample estimates: cor 0.0101734 [1] "==========4.56390802419104e-05=============" Spearman's rank correlation rho data: PopulationMat[, pop] and AncestMat[, 12] S = 6.564724e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.04889503 [1] "==========1.38809938848948e-85=============" Fisher's Exact Test for Count Data data: conf p-value = 2.19e-08 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 1.163325 1.364394 sample estimates: odds ratio 1.260564 [1] "==========2.18970456297442e-08=============" [1] "###############################" [1] "###############################" [1] "####EUROPEAN###########" [1] "###############################" Pearson's product-moment correlation data: PopulationMat[, pop] and AncestMat[, 12] t = 15.0455, df = 160586, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.03263374 0.04240185 sample estimates: cor 0.03751869 [1] "==========0=============" Spearman's rank correlation rho data: PopulationMat[, pop] and AncestMat[, 12] S = 6.436217e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.06751325 [1] "==========1.45642562053106e-161=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 1.372771 1.560928 sample estimates: odds ratio 1.464305 [1] "==========2.08771910997045e-29=============" [1] "###############################" [1] "###############################" [1] "####DENISOVA 2###########" [1] "###############################" [1] "###############################" [1] "####AFRICAN###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.2288133 0.2648134 sample estimates: odds ratio 0.2460869 [1] "==========1.77764717843512e-250=============" [1] "###############################" [1] "###############################" [1] "####AD MIX AMERICAN###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value = 0.2377 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.9583628 1.1800940 sample estimates: odds ratio 1.064596 [1] "==========0.237712740250966=============" [1] "###############################" [1] "###############################" [1] "####ASIAN###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 5.001494 5.885885 sample estimates: odds ratio 5.428121 [1] "==========1.94710636252654e-272=============" [1] "###############################" [1] "###############################" [1] "####EUROPEAN###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 2.184707 2.617649 sample estimates: odds ratio 2.392968 [1] "==========8.86238724733413e-68=============" [1] "###############################" [1] "###############################" [1] "####DENISOVA 3###########" [1] "###############################" [1] "###############################" [1] "####AFRICAN###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.2435019 0.2804579 sample estimates: odds ratio 0.2613039 [1] "==========1.33707814595772e-251=============" [1] "###############################" [1] "###############################" [1] "####AD MIX AMERICAN###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value = 0.3413 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.9125029 1.2749402 sample estimates: odds ratio 1.08196 [1] "==========0.341292122415414=============" [1] "###############################" [1] "###############################" [1] "####ASIAN###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 5.361355 6.378497 sample estimates: odds ratio 5.850305 [1] "==========1.35246355128737e-254=============" [1] "###############################" [1] "###############################" [1] "####EUROPEAN###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 2.115295 2.603442 sample estimates: odds ratio 2.349068 [1] "==========2.57802837760391e-49=============" [1] "###############################"