1092 10000 1 104154424 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.493;LDAF=0.0039;AVGPOST=0.9959;RSQ=0.5388;ERATE=0.0011;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104154455 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4094;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104154502 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.616;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.5871;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104154527 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.919;LDAF=0.0282;AVGPOST=0.9967;RSQ=0.9561;ERATE=0.0003;THETA=0.0003;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 104154552 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0603;AVGPOST=0.9996;RSQ=0.9969;ERATE=0.0003;THETA=0.0003;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 104154595 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9197;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104154991 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0019;AVGPOST=0.9974;RSQ=0.5285;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104155064 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.6842;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104155078 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0137;AVGPOST=0.9996;RSQ=0.9864;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104155167 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2185;AVGPOST=0.9993;RSQ=0.9981;ERATE=0.0003;THETA=0.0003;AC=476;AN=2184 GT:DS:GL:BD 0.21794872 0 1 104155232 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.7118;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104155405 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0021;AVGPOST=0.9991;RSQ=0.8226;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104155503 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104155524 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.6886;AVGPOST=0.9975;RSQ=0.9958;ERATE=0.0004;THETA=0.0001;AC=1505;AN=2184 GT:DS:GL:BD 0.68910259 1 1 104155948 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104156355 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104156472 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9997;AVGPOST=0.9995;RSQ=0.1405;ERATE=0.0003;THETA=0.0002;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 104156552 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104156561 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0022;AVGPOST=0.9982;RSQ=0.7267;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104156664 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9298;ERATE=0.0002;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104156807 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0214;AVGPOST=0.9993;RSQ=0.9843;ERATE=0.0004;THETA=0.0004;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 104156973 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.790;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6279;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104156982 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0039;AVGPOST=0.9986;RSQ=0.8547;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104157024 . ATTAAC A 115 PASS INDEL;BAVGPOST=0.999;BRSQ=0.593;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5611;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104157048 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7304;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104157056 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7746;ERATE=0.0002;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104157073 . T TG 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.6794;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104157278 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6726;AVGPOST=0.9983;RSQ=0.9970;ERATE=0.0002;THETA=0.0008;AC=1469;AN=2184 GT:DS:GL:BD 0.67261904 1 1 104157288 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0172;AVGPOST=0.9988;RSQ=0.9728;ERATE=0.0003;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104157339 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0210;AVGPOST=0.9996;RSQ=0.9910;ERATE=0.0002;THETA=0.0005;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 104157400 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104157534 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6800;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104157611 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0028;AVGPOST=0.9988;RSQ=0.8154;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104157727 . A AC 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.7051;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104157820 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6046;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104157867 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0032;AVGPOST=0.9989;RSQ=0.8526;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104158061 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0034;AVGPOST=0.9987;RSQ=0.8551;ERATE=0.0003;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104158145 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.976;LDAF=0.0267;AVGPOST=0.9993;RSQ=0.9919;ERATE=0.0002;THETA=0.0002;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 104158155 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.912;LDAF=0.0151;AVGPOST=0.9988;RSQ=0.9639;ERATE=0.0003;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104158219 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0029;AVGPOST=0.9994;RSQ=0.9198;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104158238 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9282;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104158317 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104158517 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8259;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104158530 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0002;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104158577 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104158656 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104158790 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0211;AVGPOST=0.9998;RSQ=0.9957;ERATE=0.0003;THETA=0.0008;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 104158879 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104158919 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4880;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104158936 . TG T 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5990;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104158970 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.6699;AVGPOST=0.9960;RSQ=0.9940;ERATE=0.0006;THETA=0.0003;AC=1463;AN=2184 GT:DS:GL:BD 0.66987181 1 1 104159014 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0086;AVGPOST=0.9983;RSQ=0.9187;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104159018 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0033;AVGPOST=0.9978;RSQ=0.7607;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104159094 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7754;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104159165 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0971;AVGPOST=0.9992;RSQ=0.9961;ERATE=0.0003;THETA=0.0005;AC=211;AN=2184 GT:DS:GL:BD 0.09661172 0 1 104159207 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0038;AVGPOST=0.9988;RSQ=0.8513;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104159208 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0248;AVGPOST=0.9996;RSQ=0.9932;ERATE=0.0003;THETA=0.0002;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 104159215 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0213;AVGPOST=0.9995;RSQ=0.9879;ERATE=0.0003;THETA=0.0003;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 104159327 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0978;AVGPOST=0.9982;RSQ=0.9925;ERATE=0.0004;THETA=0.0002;AC=211;AN=2184 GT:DS:GL:BD 0.09661172 0 1 104159974 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3437;AVGPOST=0.9975;RSQ=0.9957;ERATE=0.0003;THETA=0.0002;AC=750;AN=2184 GT:DS:GL:BD 0.34340659 0 1 104160184 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0253;AVGPOST=0.9975;RSQ=0.9648;ERATE=0.0003;THETA=0.0002;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 104160207 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0023;AVGPOST=0.9973;RSQ=0.5459;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104160213 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0020;AVGPOST=0.9977;RSQ=0.5733;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104160246 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.869;LDAF=0.0237;AVGPOST=0.9898;RSQ=0.8383;ERATE=0.0003;THETA=0.0002;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 104160413 . A AT 715 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9989;RSQ=0.8585;ERATE=0.0005;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104160467 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104160524 . C CAAAT 1942 PASS INDEL;BAVGPOST=0.997;BRSQ=0.897;LDAF=0.0168;AVGPOST=0.9978;RSQ=0.9464;ERATE=0.0003;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104160527 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8067;AVGPOST=0.9987;RSQ=0.9964;ERATE=0.0003;THETA=0.0006;AC=1761;AN=2184 GT:DS:GL:BD 0.80631870 1 1 104160531 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0027;AVGPOST=0.9976;RSQ=0.6717;ERATE=0.0002;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104160572 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8344;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104160586 . AGTT A 93 PASS INDEL;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.3424;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104160637 . CT C 462 PASS INDEL;BAVGPOST=0.997;BRSQ=0.738;LDAF=0.0075;AVGPOST=0.9966;RSQ=0.8418;ERATE=0.0004;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104160859 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104160862 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1386;AVGPOST=0.9989;RSQ=0.9967;ERATE=0.0002;THETA=0.0003;AC=303;AN=2184 GT:DS:GL:BD 0.13873626 0 1 104160994 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.7478;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104161020 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9117;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104161030 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5802;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104161342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0218;AVGPOST=0.9994;RSQ=0.9869;ERATE=0.0003;THETA=0.0004;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 104161353 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7478;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104161409 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0020;AVGPOST=0.9994;RSQ=0.8641;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104161410 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7150;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104161638 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1349;AVGPOST=0.9984;RSQ=0.9953;ERATE=0.0004;THETA=0.0004;AC=293;AN=2184 GT:DS:GL:BD 0.13415751 0 1 104161659 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104161733 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6377;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104161900 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5966;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104161969 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.966;LDAF=0.0575;AVGPOST=0.9990;RSQ=0.9927;ERATE=0.0002;THETA=0.0003;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 104162098 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0020;AVGPOST=0.9993;RSQ=0.8471;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104162167 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.8000;ERATE=0.0002;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104162343 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8468;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104162346 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2263;AVGPOST=0.9979;RSQ=0.9956;ERATE=0.0004;THETA=0.0002;AC=494;AN=2184 GT:DS:GL:BD 0.22619048 0 1 104162440 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1837;AVGPOST=0.9989;RSQ=0.9968;ERATE=0.0004;THETA=0.0004;AC=402;AN=2184 GT:DS:GL:BD 0.18406594 0 1 104162612 . TG T 175 PASS INDEL;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0040;AVGPOST=0.9966;RSQ=0.6501;ERATE=0.0011;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104162650 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8029;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104162680 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2167;AVGPOST=0.9980;RSQ=0.9951;ERATE=0.0007;THETA=0.0002;AC=473;AN=2184 GT:DS:GL:BD 0.21657509 0 1 104162708 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0067;AVGPOST=0.9994;RSQ=0.9718;ERATE=0.0002;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104162863 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0078;AVGPOST=0.9999;RSQ=0.9944;ERATE=0.0002;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104162897 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.867;LDAF=0.0144;AVGPOST=0.9972;RSQ=0.9333;ERATE=0.0003;THETA=0.0015;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104162917 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0070;AVGPOST=0.9993;RSQ=0.9613;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104162995 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9375;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104163172 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.6394;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104163278 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0085;AVGPOST=0.9990;RSQ=0.9478;ERATE=0.0004;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104163328 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8689;ERATE=0.0002;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104163370 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1837;AVGPOST=0.9992;RSQ=0.9978;ERATE=0.0003;THETA=0.0004;AC=402;AN=2184 GT:DS:GL:BD 0.18406594 0 1 104163393 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6661;ERATE=0.0002;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104163424 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0002;AVGPOST=0.9995;RSQ=0.4998;ERATE=0.0002;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104163672 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104163679 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0189;AVGPOST=0.9998;RSQ=0.9943;ERATE=0.0002;THETA=0.0065;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 104163751 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8126;ERATE=0.0002;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104163810 . A AT 460 PASS INDEL;BAVGPOST=0.923;BRSQ=0.757;LDAF=0.1614;AVGPOST=0.9386;RSQ=0.8441;ERATE=0.0010;THETA=0.0005;AC=341;AN=2184 GT:DS:GL:BD 0.15613553 0 1 104163902 . A AC 684 PASS INDEL;BAVGPOST=0.922;BRSQ=0.756;LDAF=0.1677;AVGPOST=0.9329;RSQ=0.8322;ERATE=0.0010;THETA=0.0005;AC=357;AN=2184 GT:DS:GL:BD 0.16346154 0 1 104163904 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7621;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104163952 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6670;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104164055 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.674;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.8435;ERATE=0.0002;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104164126 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8177;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104164241 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104164243 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.983;LDAF=0.1765;AVGPOST=0.9947;RSQ=0.9868;ERATE=0.0006;THETA=0.0006;AC=386;AN=2184 GT:DS:GL:BD 0.17673993 0 1 104164245 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0119;AVGPOST=0.9998;RSQ=0.9919;ERATE=0.0002;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104164248 . A AT 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104164425 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.709;LDAF=0.0043;AVGPOST=0.9972;RSQ=0.7514;ERATE=0.0006;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104164433 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0030;AVGPOST=0.9968;RSQ=0.6055;ERATE=0.0009;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104164460 . T TA 920 PASS INDEL;BAVGPOST=0.996;BRSQ=0.829;LDAF=0.0145;AVGPOST=0.9944;RSQ=0.8516;ERATE=0.0009;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 104164630 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.808;LDAF=0.0047;AVGPOST=0.9986;RSQ=0.8927;ERATE=0.0003;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104164696 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0034;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104164707 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0199;AVGPOST=0.9975;RSQ=0.9465;ERATE=0.0004;THETA=0.0008;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 104164717 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.794;LDAF=0.0066;AVGPOST=0.9985;RSQ=0.9070;ERATE=0.0002;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104164740 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8587;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104164795 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4629;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104164843 . A AT 518 PASS INDEL;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0056;AVGPOST=0.9973;RSQ=0.8288;ERATE=0.0002;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104164901 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104164915 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9539;ERATE=0.0003;THETA=0.0031;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104164932 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104164995 . TCTC T 286 PASS INDEL;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5110;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104165018 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104165029 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6495;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104165175 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.971;LDAF=0.3553;AVGPOST=0.9829;RSQ=0.9742;ERATE=0.0012;THETA=0.0008;AC=774;AN=2184 GT:DS:GL:BD 0.35439560 0 1 104165298 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.8598;AVGPOST=0.9956;RSQ=0.9866;ERATE=0.0002;THETA=0.0019;AC=1879;AN=2184 GT:DS:GL:BD 0.86034799 1 1 104165565 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0081;AVGPOST=0.9994;RSQ=0.9647;ERATE=0.0003;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104165618 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0118;AVGPOST=0.9999;RSQ=0.9967;ERATE=0.0002;THETA=0.0022;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104165822 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0002;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104165935 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0002;THETA=0.0056;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104165952 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.960;LDAF=0.1844;AVGPOST=0.9845;RSQ=0.9656;ERATE=0.0008;THETA=0.0055;AC=401;AN=2184 GT:DS:GL:BD 0.18360806 0 1 104166089 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0002;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104166126 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0002;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104166139 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.981;LDAF=0.1674;AVGPOST=0.9898;RSQ=0.9754;ERATE=0.0005;THETA=0.0309;AC=363;AN=2184 GT:DS:GL:BD 0.16620879 0 1 104166194 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0017;AVGPOST=0.9996;RSQ=0.9137;ERATE=0.0002;THETA=0.0094;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104166388 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0002;THETA=0.0215;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104166413 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.827;LDAF=0.0050;AVGPOST=0.9985;RSQ=0.8853;ERATE=0.0003;THETA=0.0166;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104166442 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.927;LDAF=0.3356;AVGPOST=0.9675;RSQ=0.9473;ERATE=0.0044;THETA=0.0141;AC=723;AN=2184 GT:DS:GL:BD 0.33104396 0 1 104166478 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6616;ERATE=0.0002;THETA=0.0263;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104166502 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5621;ERATE=0.0003;THETA=0.0234;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104166509 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8123;ERATE=0.0004;THETA=0.0214;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104166511 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0002;THETA=0.0068;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104166549 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0020;AVGPOST=0.9991;RSQ=0.8144;ERATE=0.0003;THETA=0.0178;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104166570 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8450;ERATE=0.0003;THETA=0.0046;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104166594 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0002;THETA=0.0150;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104166658 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0043;AVGPOST=0.9994;RSQ=0.9294;ERATE=0.0004;THETA=0.0106;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104166693 . AT A 99 PASS INDEL;BAVGPOST=1.000;BRSQ=0.731;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.5799;ERATE=0.0003;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104166743 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0003;THETA=0.0112;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104166827 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0048;AVGPOST=0.9993;RSQ=0.9481;ERATE=0.0002;THETA=0.0306;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104166851 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0034;AVGPOST=0.9987;RSQ=0.8859;ERATE=0.0003;THETA=0.0015;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104167000 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6283;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104167073 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.939;LDAF=0.0053;AVGPOST=0.9985;RSQ=0.8785;ERATE=0.0004;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104167115 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9549;ERATE=0.0003;THETA=0.0087;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104167164 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9641;ERATE=0.0004;THETA=0.0022;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104167264 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5993;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104167302 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104167334 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0070;AVGPOST=0.9984;RSQ=0.9047;ERATE=0.0006;THETA=0.0033;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104167357 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104167401 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0117;AVGPOST=0.9994;RSQ=0.9790;ERATE=0.0003;THETA=0.0015;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104167442 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.7153;ERATE=0.0003;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104167505 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7132;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104167511 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0172;AVGPOST=0.9982;RSQ=0.9544;ERATE=0.0004;THETA=0.0006;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104167548 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.881;LDAF=0.0079;AVGPOST=0.9976;RSQ=0.8793;ERATE=0.0004;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104167556 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.1962;AVGPOST=0.9931;RSQ=0.9844;ERATE=0.0004;THETA=0.0006;AC=426;AN=2184 GT:DS:GL:BD 0.19505495 0 1 104167571 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0119;AVGPOST=0.9999;RSQ=0.9963;ERATE=0.0003;THETA=0.0010;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104167670 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0004;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104167684 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0029;AVGPOST=0.9991;RSQ=0.8729;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104167767 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104167778 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9394;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104167825 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.8188;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104167948 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8314;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104167990 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.5926;AVGPOST=0.9956;RSQ=0.9928;ERATE=0.0005;THETA=0.0007;AC=1297;AN=2184 GT:DS:GL:BD 0.59386444 1 1 104168014 . T TA 28 PASS INDEL;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0014;AVGPOST=0.9986;RSQ=0.6060;ERATE=0.0004;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104168042 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0046;AVGPOST=0.9998;RSQ=0.9766;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104168142 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0170;AVGPOST=0.9975;RSQ=0.9499;ERATE=0.0004;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 104168400 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104168435 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5134;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104168515 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0123;AVGPOST=0.9999;RSQ=0.9951;ERATE=0.0003;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104168543 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.825;LDAF=0.0044;AVGPOST=0.9981;RSQ=0.8694;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104168592 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0029;AVGPOST=0.9976;RSQ=0.6535;ERATE=0.0008;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104168673 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6624;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104168835 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0059;AVGPOST=0.9983;RSQ=0.9014;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104168972 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7618;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104168999 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7143;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104169044 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7944;ERATE=0.0007;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104169197 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0041;AVGPOST=0.9997;RSQ=0.9652;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104169284 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.2857;AVGPOST=0.9967;RSQ=0.9939;ERATE=0.0005;THETA=0.0004;AC=623;AN=2184 GT:DS:GL:BD 0.28525642 0 1 104169384 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104169448 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9992;RSQ=0.9418;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104169497 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.5070;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104169500 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.974;LDAF=0.9308;AVGPOST=0.9938;RSQ=0.9666;ERATE=0.0005;THETA=0.0005;AC=2035;AN=2184 GT:DS:GL:BD 0.93177658 1 1 104169632 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9789;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104169643 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6602;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104169748 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.4054;AVGPOST=0.9957;RSQ=0.9936;ERATE=0.0005;THETA=0.0005;AC=882;AN=2184 GT:DS:GL:BD 0.40384614 0 1 104169758 . GA G 1041 PASS INDEL;BAVGPOST=0.997;BRSQ=0.872;LDAF=0.0118;AVGPOST=0.9978;RSQ=0.9251;ERATE=0.0005;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104169787 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1699;AVGPOST=0.9957;RSQ=0.9892;ERATE=0.0005;THETA=0.0006;AC=373;AN=2184 GT:DS:GL:BD 0.17078754 0 1 104169900 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9602;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104169991 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0098;AVGPOST=0.9996;RSQ=0.9821;ERATE=0.0003;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104170047 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7822;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104170059 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9865;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104170201 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0073;AVGPOST=0.9997;RSQ=0.9793;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104170294 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0007;AVGPOST=0.9992;RSQ=0.5087;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104170330 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0165;AVGPOST=0.9997;RSQ=0.9928;ERATE=0.0003;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 104170471 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104170497 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0025;AVGPOST=0.9990;RSQ=0.8511;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104170498 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0027;AVGPOST=0.9979;RSQ=0.7360;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104170510 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0170;AVGPOST=0.9999;RSQ=0.9975;ERATE=0.0003;THETA=0.0006;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104170540 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.973;LDAF=0.1505;AVGPOST=0.9865;RSQ=0.9617;ERATE=0.0005;THETA=0.0004;AC=324;AN=2184 GT:DS:GL:BD 0.14835165 0 1 104170790 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0024;AVGPOST=0.9961;RSQ=0.3909;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104170796 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0041;AVGPOST=0.9976;RSQ=0.7670;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104170947 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5641;AVGPOST=0.9972;RSQ=0.9953;ERATE=0.0005;THETA=0.0013;AC=1232;AN=2184 GT:DS:GL:BD 0.56410259 1 1 104170964 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0043;AVGPOST=0.9994;RSQ=0.9304;ERATE=0.0004;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104171041 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0046;AVGPOST=0.9988;RSQ=0.8865;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104171104 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0062;AVGPOST=0.9931;RSQ=0.5796;ERATE=0.0007;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104171147 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8425;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104171179 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.950;LDAF=0.0160;AVGPOST=0.9992;RSQ=0.9814;ERATE=0.0003;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 104171199 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8156;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104171292 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7921;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104171360 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104171429 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0054;AVGPOST=0.9992;RSQ=0.9346;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104171452 . CCT C 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4440;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104171480 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7664;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104171542 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9806;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104171585 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1691;AVGPOST=0.9991;RSQ=0.9975;ERATE=0.0003;THETA=0.0003;AC=370;AN=2184 GT:DS:GL:BD 0.16941392 0 1 104171613 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104171623 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0163;AVGPOST=0.9994;RSQ=0.9830;ERATE=0.0003;THETA=0.0002;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 104171675 . AGAAG A 241 PASS INDEL;BAVGPOST=0.999;BRSQ=0.636;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7313;ERATE=0.0007;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104171703 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.979;LDAF=0.6199;AVGPOST=0.9890;RSQ=0.9808;ERATE=0.0039;THETA=0.0002;AC=1361;AN=2184 GT:DS:GL:BD 0.62316847 1 1 104171733 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.844;LDAF=0.0035;AVGPOST=0.9985;RSQ=0.8282;ERATE=0.0006;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104171755 . G GAAA 56816 PASS INDEL;BAVGPOST=0.974;BRSQ=0.951;LDAF=0.6054;AVGPOST=0.9716;RSQ=0.9541;ERATE=0.0060;THETA=0.0002;AC=1333;AN=2184 GT:DS:GL:BD 0.61034799 1 1 104171855 rs35799404 A AAAC 99053 PASS INDEL;BAVGPOST=0.974;BRSQ=0.950;LDAF=0.6055;AVGPOST=0.9788;RSQ=0.9668;ERATE=0.0035;THETA=0.0002;AC=1330;AN=2184 GT:DS:GL:BD 0.60897434 1 1 104171856 . AAAGG A 465 PASS INDEL;BAVGPOST=0.996;BRSQ=0.813;LDAF=0.0105;AVGPOST=0.9941;RSQ=0.7721;ERATE=0.0008;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104171857 . AAAGG A 18135 PASS INDEL;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1684;AVGPOST=0.9971;RSQ=0.9915;ERATE=0.0007;THETA=0.0006;AC=368;AN=2184 GT:DS:GL:BD 0.16849817 0 1 104171899 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.984;LDAF=0.6736;AVGPOST=0.9902;RSQ=0.9825;ERATE=0.0008;THETA=0.0004;AC=1470;AN=2184 GT:DS:GL:BD 0.67307693 1 1 104171975 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7143;ERATE=0.0003;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104172081 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0067;AVGPOST=0.9993;RSQ=0.9548;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104172140 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.731;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8586;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104172179 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7787;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104172184 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0202;AVGPOST=0.9999;RSQ=0.9979;ERATE=0.0003;THETA=0.0003;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 104172233 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104172325 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0048;AVGPOST=0.9968;RSQ=0.7892;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104172380 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6388;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104172381 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0094;AVGPOST=0.9995;RSQ=0.9766;ERATE=0.0003;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104172489 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6701;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104172491 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0203;AVGPOST=0.9988;RSQ=0.9752;ERATE=0.0010;THETA=0.0003;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 104172514 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.976;LDAF=0.0579;AVGPOST=0.9993;RSQ=0.9960;ERATE=0.0003;THETA=0.0002;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 104172575 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.955;LDAF=0.0189;AVGPOST=0.9981;RSQ=0.9553;ERATE=0.0003;THETA=0.0006;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 104172587 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104172631 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5272;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104172688 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0582;AVGPOST=0.9995;RSQ=0.9961;ERATE=0.0003;THETA=0.0004;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 104172717 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0978;AVGPOST=0.9995;RSQ=0.9972;ERATE=0.0003;THETA=0.0003;AC=214;AN=2184 GT:DS:GL:BD 0.09798535 0 1 104172754 . CA C 17 PASS INDEL;BAVGPOST=0.999;BRSQ=0.664;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6763;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104172884 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8093;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104172885 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9203;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104172981 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5717;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104172994 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0058;AVGPOST=0.9990;RSQ=0.9281;ERATE=0.0003;THETA=0.0014;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104173045 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.794;LDAF=0.0059;AVGPOST=0.9973;RSQ=0.8414;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104173048 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0057;AVGPOST=0.9986;RSQ=0.9316;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104173049 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8702;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104173108 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6312;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104173220 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0131;AVGPOST=0.9989;RSQ=0.9677;ERATE=0.0004;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104173246 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.669;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7819;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104173304 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0029;AVGPOST=0.9984;RSQ=0.7509;ERATE=0.0011;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104173325 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0065;AVGPOST=0.9998;RSQ=0.9864;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104173415 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8481;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104173419 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5790;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104173439 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.892;LDAF=0.0127;AVGPOST=0.9968;RSQ=0.8992;ERATE=0.0010;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104173488 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0544;AVGPOST=0.9987;RSQ=0.9907;ERATE=0.0003;THETA=0.0002;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 104173510 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104173511 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0076;AVGPOST=0.9994;RSQ=0.9640;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104173552 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1176;AVGPOST=0.9994;RSQ=0.9972;ERATE=0.0003;THETA=0.0005;AC=257;AN=2184 GT:DS:GL:BD 0.11767399 0 1 104173567 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0021;AVGPOST=0.9972;RSQ=0.5276;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104173568 . A AT 415 PASS INDEL;BAVGPOST=0.998;BRSQ=0.730;LDAF=0.0040;AVGPOST=0.9968;RSQ=0.6895;ERATE=0.0005;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104173596 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.912;LDAF=0.0166;AVGPOST=0.9965;RSQ=0.9159;ERATE=0.0003;THETA=0.0002;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 104173640 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6927;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104173772 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0045;AVGPOST=0.9991;RSQ=0.9379;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104173773 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0199;AVGPOST=0.9994;RSQ=0.9873;ERATE=0.0003;THETA=0.0007;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 104173797 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0202;AVGPOST=0.9997;RSQ=0.9925;ERATE=0.0003;THETA=0.0003;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 104173880 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.982;LDAF=0.1207;AVGPOST=0.9932;RSQ=0.9773;ERATE=0.0005;THETA=0.0004;AC=265;AN=2184 GT:DS:GL:BD 0.12133700 0 1 104173979 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0082;AVGPOST=0.9997;RSQ=0.9824;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104174042 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104174142 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0201;AVGPOST=0.9999;RSQ=0.9979;ERATE=0.0003;THETA=0.0006;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 104174153 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104174250 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.954;LDAF=0.0197;AVGPOST=0.9982;RSQ=0.9610;ERATE=0.0003;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 104174343 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0021;AVGPOST=0.9988;RSQ=0.7746;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104174347 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0461;AVGPOST=0.9963;RSQ=0.9691;ERATE=0.0003;THETA=0.0006;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 104174451 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6933;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104174468 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=1.0000;RSQ=0.9963;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104174509 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0132;AVGPOST=0.9990;RSQ=0.9722;ERATE=0.0003;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104174547 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.9456;AVGPOST=0.9990;RSQ=0.9921;ERATE=0.0004;THETA=0.0007;AC=2066;AN=2184 GT:DS:GL:BD 0.94597071 1 1 104174556 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7683;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104174687 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7640;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104174754 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5658;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104174759 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.753;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6724;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104174861 . T TA 39 PASS INDEL;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104174872 . G GT 38 PASS INDEL;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104174873 . TGAA T 716 PASS INDEL;BAVGPOST=0.999;BRSQ=0.785;LDAF=0.0038;AVGPOST=0.9975;RSQ=0.7336;ERATE=0.0005;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104174883 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0003;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104174951 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6872;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104174959 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5372;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104175030 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0029;AVGPOST=0.9992;RSQ=0.8765;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104175190 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0033;AVGPOST=0.9980;RSQ=0.7621;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104175290 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0189;AVGPOST=0.9992;RSQ=0.9844;ERATE=0.0003;THETA=0.0005;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 104175348 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104175459 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0212;AVGPOST=0.9989;RSQ=0.9753;ERATE=0.0005;THETA=0.0004;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 104175654 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104175702 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0018;AVGPOST=0.9994;RSQ=0.8649;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104175719 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0140;AVGPOST=0.9990;RSQ=0.9699;ERATE=0.0005;THETA=0.0002;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104175745 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.594;LDAF=0.0086;AVGPOST=0.9883;RSQ=0.4715;ERATE=0.0031;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104175973 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0072;AVGPOST=0.9971;RSQ=0.8343;ERATE=0.0004;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104175984 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0981;AVGPOST=0.9986;RSQ=0.9949;ERATE=0.0003;THETA=0.0002;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 104176131 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0075;AVGPOST=0.9994;RSQ=0.9607;ERATE=0.0003;THETA=0.0015;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104176189 rs67348888 GA G 20806 PASS INDEL;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.3217;AVGPOST=0.9841;RSQ=0.9731;ERATE=0.0021;THETA=0.0002;AC=696;AN=2184 GT:DS:GL:BD 0.31868133 0 1 104176403 . AT A 784 PASS INDEL;BAVGPOST=0.871;BRSQ=0.725;LDAF=0.2548;AVGPOST=0.9133;RSQ=0.8463;ERATE=0.0033;THETA=0.0002;AC=583;AN=2184 GT:DS:GL:BD 0.26694140 0 1 104176406 . T TA 2947 PASS INDEL;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0280;AVGPOST=0.9973;RSQ=0.9627;ERATE=0.0004;THETA=0.0005;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 104176460 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.977;LDAF=0.0983;AVGPOST=0.9978;RSQ=0.9908;ERATE=0.0006;THETA=0.0004;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 104176485 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8754;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104176506 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.902;LDAF=0.0073;AVGPOST=0.9985;RSQ=0.9112;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104176587 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0108;AVGPOST=0.9988;RSQ=0.9534;ERATE=0.0003;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104176605 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4931;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104176682 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9872;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104176695 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0037;AVGPOST=1.0000;RSQ=0.9941;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104176830 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7877;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104176845 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104176896 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0555;AVGPOST=0.9985;RSQ=0.9886;ERATE=0.0003;THETA=0.0005;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 104177023 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.7986;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104177030 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.8128;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104177040 rs61428463 TC T 899 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0047;AVGPOST=0.9989;RSQ=0.8968;ERATE=0.0003;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104177097 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0443;AVGPOST=0.9987;RSQ=0.9876;ERATE=0.0003;THETA=0.0004;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 104177119 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6726;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104177158 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0002;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104177182 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.2644;AVGPOST=0.9947;RSQ=0.9926;ERATE=0.0003;THETA=0.0003;AC=574;AN=2184 GT:DS:GL:BD 0.26282051 0 1 104177231 rs113570848 GTA G 9278 PASS INDEL;BAVGPOST=0.995;BRSQ=0.970;LDAF=0.0596;AVGPOST=0.9848;RSQ=0.9208;ERATE=0.0031;THETA=0.0030;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 104177298 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.639;LDAF=0.0030;AVGPOST=0.9979;RSQ=0.6955;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104177373 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0035;AVGPOST=0.9986;RSQ=0.8676;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104177375 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.696;LDAF=0.0025;AVGPOST=0.9984;RSQ=0.7104;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104177399 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.549;LDAF=0.0090;AVGPOST=0.9926;RSQ=0.6619;ERATE=0.0009;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104177422 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0533;AVGPOST=0.9941;RSQ=0.9647;ERATE=0.0008;THETA=0.0010;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 104177633 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0022;AVGPOST=0.9974;RSQ=0.5734;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104177712 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4785;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104177890 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0153;AVGPOST=0.9993;RSQ=0.9786;ERATE=0.0003;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 104177955 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5817;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104178032 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104178046 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0079;AVGPOST=0.9995;RSQ=0.9749;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104178130 . CA C 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5886;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104178159 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.810;LDAF=0.0030;AVGPOST=0.9987;RSQ=0.8158;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104178170 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.975;LDAF=0.0831;AVGPOST=0.9962;RSQ=0.9832;ERATE=0.0004;THETA=0.0008;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 104178175 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0518;AVGPOST=0.9996;RSQ=0.9974;ERATE=0.0003;THETA=0.0008;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 104178244 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9971;RSQ=0.8401;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104178340 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7301;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104178461 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0039;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104178505 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.8154;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104178539 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104178713 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7586;ERATE=0.0002;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104178727 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1904;AVGPOST=0.9989;RSQ=0.9974;ERATE=0.0004;THETA=0.0009;AC=415;AN=2184 GT:DS:GL:BD 0.19001831 0 1 104179336 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6068;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104179372 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.980;LDAF=0.0404;AVGPOST=0.9982;RSQ=0.9840;ERATE=0.0003;THETA=0.0006;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 104179459 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104179460 . C CTTAT 275 PASS INDEL;BAVGPOST=0.994;BRSQ=0.486;LDAF=0.0084;AVGPOST=0.9957;RSQ=0.8132;ERATE=0.0007;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104179494 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0524;AVGPOST=0.9993;RSQ=0.9955;ERATE=0.0002;THETA=0.0004;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 104179535 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0014;AVGPOST=0.9993;RSQ=0.7970;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104179539 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4267;ERATE=0.0006;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104179574 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0089;AVGPOST=0.9994;RSQ=0.9678;ERATE=0.0002;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104179841 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0004;AVGPOST=0.9991;RSQ=0.3126;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104179861 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8919;ERATE=0.0002;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104179929 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1484;AVGPOST=0.9970;RSQ=0.9921;ERATE=0.0004;THETA=0.0015;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 104179947 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104180016 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6512;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104180058 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.937;LDAF=0.0147;AVGPOST=0.9973;RSQ=0.9293;ERATE=0.0003;THETA=0.0008;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104180128 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1082;AVGPOST=0.9988;RSQ=0.9944;ERATE=0.0003;THETA=0.0007;AC=237;AN=2184 GT:DS:GL:BD 0.10851648 0 1 104180214 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104180260 . G GT 43 PASS INDEL;BAVGPOST=0.999;BRSQ=0.673;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5506;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104180369 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104180430 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8162;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104180478 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5216;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104180533 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9548;ERATE=0.0002;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104180772 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104180928 . T TA 154 PASS INDEL;BAVGPOST=0.985;BRSQ=0.639;LDAF=0.0366;AVGPOST=0.9598;RSQ=0.5586;ERATE=0.0101;THETA=0.0016;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 104181030 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0077;AVGPOST=0.9997;RSQ=0.9837;ERATE=0.0003;THETA=0.0030;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104181066 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9732;ERATE=0.0002;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104181121 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.1923;AVGPOST=0.9989;RSQ=0.9974;ERATE=0.0002;THETA=0.0007;AC=420;AN=2184 GT:DS:GL:BD 0.19230770 0 1 104181198 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.6814;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104181296 . GT G 43 PASS INDEL;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5835;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104181308 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0105;AVGPOST=1.0000;RSQ=0.9981;ERATE=0.0002;THETA=0.0008;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104181334 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0018;AVGPOST=0.9999;RSQ=0.9762;ERATE=0.0002;THETA=0.0033;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104181394 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.756;LDAF=0.0059;AVGPOST=0.9981;RSQ=0.8879;ERATE=0.0002;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104181412 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.775;LDAF=0.0046;AVGPOST=0.9968;RSQ=0.7351;ERATE=0.0004;THETA=0.0013;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104181709 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6839;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104181918 . CT C 2496 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0191;AVGPOST=0.9990;RSQ=0.9785;ERATE=0.0002;THETA=0.0007;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 104181944 rs5776505 T TC 6196 PASS INDEL;BAVGPOST=0.954;BRSQ=0.855;LDAF=0.1332;AVGPOST=0.9696;RSQ=0.9151;ERATE=0.0025;THETA=0.0006;AC=291;AN=2184 GT:DS:GL:BD 0.13324176 0 1 104181967 rs5776506 T TC 2734 PASS INDEL;BAVGPOST=0.951;BRSQ=0.825;LDAF=0.1237;AVGPOST=0.9680;RSQ=0.9071;ERATE=0.0005;THETA=0.0004;AC=267;AN=2184 GT:DS:GL:BD 0.12225275 0 1 104181970 rs5776507 T TCC 1121 PASS INDEL;BAVGPOST=0.970;BRSQ=0.632;LDAF=0.0617;AVGPOST=0.9630;RSQ=0.7628;ERATE=0.0041;THETA=0.0033;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 104181981 . C CT 1826 PASS INDEL;BAVGPOST=0.959;BRSQ=0.689;LDAF=0.0909;AVGPOST=0.9414;RSQ=0.7279;ERATE=0.0069;THETA=0.0054;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 104181984 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.717;LDAF=0.1131;AVGPOST=0.9152;RSQ=0.6760;ERATE=0.0291;THETA=0.0007;AC=191;AN=2184 GT:DS:GL:BD 0.08745421 0 1 104182025 . T TTTCTTTCC 17796 PASS INDEL;BAVGPOST=0.897;BRSQ=0.783;LDAF=0.3360;AVGPOST=0.8597;RSQ=0.7529;ERATE=0.0364;THETA=0.0007;AC=682;AN=2184 GT:DS:GL:BD 0.31227106 0 1 104182025 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.945;BRSQ=0.839;LDAF=0.2374;AVGPOST=0.9178;RSQ=0.8096;ERATE=0.0225;THETA=0.0044;AC=505;AN=2184 GT:DS:GL:BD 0.23122710 0 1 104182037 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104182079 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104182116 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8844;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104182184 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1992;AVGPOST=0.9971;RSQ=0.9936;ERATE=0.0005;THETA=0.0004;AC=436;AN=2184 GT:DS:GL:BD 0.19963370 0 1 104182297 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.6223;ERATE=0.0003;THETA=0.0001;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104182300 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104182369 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.4061;AVGPOST=0.9973;RSQ=0.9955;ERATE=0.0005;THETA=0.0008;AC=884;AN=2184 GT:DS:GL:BD 0.40476191 0 1 104182372 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4979;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104182431 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104182846 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0772;AVGPOST=0.9973;RSQ=0.9852;ERATE=0.0003;THETA=0.0004;AC=169;AN=2184 GT:DS:GL:BD 0.07738096 0 1 104183167 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3979;AVGPOST=0.9981;RSQ=0.9967;ERATE=0.0004;THETA=0.0024;AC=867;AN=2184 GT:DS:GL:BD 0.39697802 0 1 104183368 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.684;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6843;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104183445 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104183522 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9618;ERATE=0.0003;THETA=0.0034;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104183561 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3962;AVGPOST=0.9964;RSQ=0.9943;ERATE=0.0004;THETA=0.0003;AC=864;AN=2184 GT:DS:GL:BD 0.39560440 0 1 104183633 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0015;AVGPOST=0.9992;RSQ=0.7884;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104183635 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0203;AVGPOST=0.9995;RSQ=0.9885;ERATE=0.0003;THETA=0.0003;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 104183639 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3965;AVGPOST=0.9977;RSQ=0.9962;ERATE=0.0004;THETA=0.0003;AC=865;AN=2184 GT:DS:GL:BD 0.39606228 0 1 104183640 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104183662 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.957;LDAF=0.3959;AVGPOST=0.9894;RSQ=0.9827;ERATE=0.0005;THETA=0.0005;AC=871;AN=2184 GT:DS:GL:BD 0.39880952 0 1 104183698 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.957;LDAF=0.3972;AVGPOST=0.9854;RSQ=0.9765;ERATE=0.0005;THETA=0.0014;AC=876;AN=2184 GT:DS:GL:BD 0.40109891 0 1 104183699 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1659;AVGPOST=0.9975;RSQ=0.9926;ERATE=0.0004;THETA=0.0005;AC=362;AN=2184 GT:DS:GL:BD 0.16575092 0 1 104183742 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0028;AVGPOST=0.9971;RSQ=0.6309;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104183744 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5615;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104183772 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.4026;AVGPOST=0.9954;RSQ=0.9919;ERATE=0.0008;THETA=0.0003;AC=879;AN=2184 GT:DS:GL:BD 0.40247253 0 1 104183794 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.988;LDAF=0.1661;AVGPOST=0.9963;RSQ=0.9889;ERATE=0.0006;THETA=0.0008;AC=362;AN=2184 GT:DS:GL:BD 0.16575092 0 1 104183795 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.655;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6200;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104183800 . T TTTG 34281 PASS INDEL;BAVGPOST=0.985;BRSQ=0.972;LDAF=0.4002;AVGPOST=0.9888;RSQ=0.9801;ERATE=0.0018;THETA=0.0005;AC=876;AN=2184 GT:DS:GL:BD 0.40109891 0 1 104183824 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.4055;AVGPOST=0.9950;RSQ=0.9911;ERATE=0.0011;THETA=0.0002;AC=884;AN=2184 GT:DS:GL:BD 0.40476191 0 1 104183860 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7520;ERATE=0.0003;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104183881 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4051;AVGPOST=0.9973;RSQ=0.9955;ERATE=0.0003;THETA=0.0005;AC=882;AN=2184 GT:DS:GL:BD 0.40384614 0 1 104184020 . A AT 32 PASS INDEL;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0039;AVGPOST=0.9940;RSQ=0.4137;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104184022 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4047;AVGPOST=0.9975;RSQ=0.9961;ERATE=0.0003;THETA=0.0022;AC=881;AN=2184 GT:DS:GL:BD 0.40338829 0 1 104184046 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5326;ERATE=0.0003;THETA=0.0061;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104184094 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0083;AVGPOST=0.9997;RSQ=0.9833;ERATE=0.0003;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104184099 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0004;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104184172 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9377;ERATE=0.0003;THETA=0.0043;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104184217 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.4334;AVGPOST=0.9893;RSQ=0.9835;ERATE=0.0006;THETA=0.0033;AC=944;AN=2184 GT:DS:GL:BD 0.43223444 0 1 104184228 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.986;LDAF=0.6131;AVGPOST=0.9885;RSQ=0.9820;ERATE=0.0004;THETA=0.0298;AC=1340;AN=2184 GT:DS:GL:BD 0.61355311 1 1 104184242 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0058;AVGPOST=0.9980;RSQ=0.8562;ERATE=0.0003;THETA=0.0330;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104184409 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0258;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104184487 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.909;LDAF=0.0125;AVGPOST=0.9961;RSQ=0.8775;ERATE=0.0003;THETA=0.0190;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104184505 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0250;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104184632 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.685;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6452;ERATE=0.0004;THETA=0.0104;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104184658 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7290;ERATE=0.0003;THETA=0.0323;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104184689 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0060;AVGPOST=0.9973;RSQ=0.8273;ERATE=0.0007;THETA=0.0089;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104184697 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.850;LDAF=0.0107;AVGPOST=0.9957;RSQ=0.8418;ERATE=0.0003;THETA=0.0136;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104184768 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6426;ERATE=0.0004;THETA=0.0238;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104184773 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.820;LDAF=0.0059;AVGPOST=0.9968;RSQ=0.7790;ERATE=0.0004;THETA=0.0145;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104184811 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8355;ERATE=0.0003;THETA=0.0169;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104184832 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.907;LDAF=0.1408;AVGPOST=0.9730;RSQ=0.9124;ERATE=0.0030;THETA=0.0153;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 104184917 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5929;ERATE=0.0003;THETA=0.0202;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104184918 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.951;BRSQ=0.921;LDAF=0.5650;AVGPOST=0.9484;RSQ=0.9293;ERATE=0.0047;THETA=0.0185;AC=1231;AN=2184 GT:DS:GL:BD 0.56364471 1 1 104184946 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.905;LDAF=0.0250;AVGPOST=0.9950;RSQ=0.9249;ERATE=0.0004;THETA=0.0167;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 104184952 . T TG 26 PASS INDEL;BAVGPOST=0.997;BRSQ=0.564;LDAF=0.0076;AVGPOST=0.9893;RSQ=0.4492;ERATE=0.0022;THETA=0.0176;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104185188 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0304;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104185315 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.961;LDAF=0.4500;AVGPOST=0.9758;RSQ=0.9628;ERATE=0.0013;THETA=0.0093;AC=977;AN=2184 GT:DS:GL:BD 0.44734433 0 1 104185353 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.855;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8772;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104185465 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104185503 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5712;ERATE=0.0003;THETA=0.0038;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104185514 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104185528 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0475;AVGPOST=0.9985;RSQ=0.9853;ERATE=0.0005;THETA=0.0008;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 104185578 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.947;LDAF=0.9838;AVGPOST=0.9985;RSQ=0.9696;ERATE=0.0003;THETA=0.0008;AC=2149;AN=2184 GT:DS:GL:BD 0.98397434 1 1 104185600 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2432;AVGPOST=0.9932;RSQ=0.9861;ERATE=0.0005;THETA=0.0011;AC=527;AN=2184 GT:DS:GL:BD 0.24130036 0 1 104185653 . AT A 178 PASS INDEL;BAVGPOST=0.999;BRSQ=0.602;LDAF=0.0008;AVGPOST=0.9986;RSQ=0.2841;ERATE=0.0006;THETA=0.0007;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104185701 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.629;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9382;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104185737 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.629;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8653;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104185756 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0643;AVGPOST=0.9980;RSQ=0.9896;ERATE=0.0003;THETA=0.0012;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 104185791 rs111502228 TC T 9555 PASS INDEL;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0646;AVGPOST=0.9973;RSQ=0.9857;ERATE=0.0004;THETA=0.0010;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 104185797 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0637;AVGPOST=0.9964;RSQ=0.9826;ERATE=0.0004;THETA=0.0004;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 104185916 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0028;AVGPOST=0.9996;RSQ=0.9400;ERATE=0.0003;THETA=0.0036;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104185940 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104185986 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.988;LDAF=0.8583;AVGPOST=0.9964;RSQ=0.9897;ERATE=0.0004;THETA=0.0007;AC=1876;AN=2184 GT:DS:GL:BD 0.85897434 1 1 104186020 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1154;AVGPOST=0.9989;RSQ=0.9955;ERATE=0.0004;THETA=0.0004;AC=251;AN=2184 GT:DS:GL:BD 0.11492674 0 1 104186036 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104186139 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8771;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104186152 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0489;AVGPOST=0.9987;RSQ=0.9871;ERATE=0.0003;THETA=0.0006;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 104186234 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104186281 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8338;ERATE=0.0003;THETA=0.0028;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104186297 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0423;AVGPOST=0.9986;RSQ=0.9876;ERATE=0.0003;THETA=0.0002;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 104186362 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9358;ERATE=0.0005;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104186422 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104186461 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0135;AVGPOST=0.9995;RSQ=0.9880;ERATE=0.0003;THETA=0.0008;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104186501 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9210;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104186512 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5953;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104186520 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1653;AVGPOST=0.9967;RSQ=0.9904;ERATE=0.0003;THETA=0.0002;AC=361;AN=2184 GT:DS:GL:BD 0.16529304 0 1 104186548 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.744;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8185;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104186568 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1149;AVGPOST=0.9996;RSQ=0.9984;ERATE=0.0003;THETA=0.0003;AC=250;AN=2184 GT:DS:GL:BD 0.11446887 0 1 104186625 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1147;AVGPOST=0.9995;RSQ=0.9978;ERATE=0.0003;THETA=0.0003;AC=250;AN=2184 GT:DS:GL:BD 0.11446887 0 1 104186646 rs113136729 A AT 13246 PASS INDEL;BAVGPOST=0.995;BRSQ=0.976;LDAF=0.1168;AVGPOST=0.9971;RSQ=0.9898;ERATE=0.0006;THETA=0.0007;AC=253;AN=2184 GT:DS:GL:BD 0.11584249 0 1 104186649 . T TG 1404 PASS INDEL;BAVGPOST=0.994;BRSQ=0.971;LDAF=0.1175;AVGPOST=0.9906;RSQ=0.9664;ERATE=0.0010;THETA=0.0004;AC=253;AN=2184 GT:DS:GL:BD 0.11584249 0 1 104186652 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7530;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104186699 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7995;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104186701 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.8190;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104186733 . A AT 2973 PASS INDEL;BAVGPOST=0.998;BRSQ=0.976;LDAF=0.0378;AVGPOST=0.9960;RSQ=0.9610;ERATE=0.0005;THETA=0.0004;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 104186749 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1147;AVGPOST=0.9999;RSQ=0.9996;ERATE=0.0003;THETA=0.0003;AC=250;AN=2184 GT:DS:GL:BD 0.11446887 0 1 104186814 rs5776565 GA G 20526 PASS INDEL;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.1679;AVGPOST=0.9936;RSQ=0.9822;ERATE=0.0010;THETA=0.0003;AC=367;AN=2184 GT:DS:GL:BD 0.16804029 0 1 104186845 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1138;AVGPOST=0.9975;RSQ=0.9913;ERATE=0.0004;THETA=0.0004;AC=249;AN=2184 GT:DS:GL:BD 0.11401099 0 1 104186870 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0398;AVGPOST=0.9994;RSQ=0.9926;ERATE=0.0003;THETA=0.0004;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 104187000 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0829;AVGPOST=0.9979;RSQ=0.9901;ERATE=0.0003;THETA=0.0004;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 104187005 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8614;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104187075 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0002;THETA=0.0093;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104187099 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.0778;AVGPOST=0.9977;RSQ=0.9888;ERATE=0.0003;THETA=0.0019;AC=169;AN=2184 GT:DS:GL:BD 0.07738096 0 1 104187264 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0053;AVGPOST=0.9984;RSQ=0.8756;ERATE=0.0003;THETA=0.0064;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104187403 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0018;AVGPOST=0.9987;RSQ=0.7285;ERATE=0.0006;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104187409 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0070;AVGPOST=0.9987;RSQ=0.9257;ERATE=0.0002;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104187447 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0007;AVGPOST=0.9992;RSQ=0.5011;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104187477 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0058;AVGPOST=0.9993;RSQ=0.9458;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104187478 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.3244;AVGPOST=0.9936;RSQ=0.9892;ERATE=0.0003;THETA=0.0003;AC=709;AN=2184 GT:DS:GL:BD 0.32463369 0 1 104187553 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.3244;AVGPOST=0.9932;RSQ=0.9887;ERATE=0.0003;THETA=0.0023;AC=709;AN=2184 GT:DS:GL:BD 0.32463369 0 1 104187561 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104187584 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104187606 . A AG 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7682;ERATE=0.0002;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104187723 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104187815 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6315;ERATE=0.0003;THETA=0.0060;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104187842 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.3791;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104187888 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0023;AVGPOST=0.9998;RSQ=0.9528;ERATE=0.0003;THETA=0.0064;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104187939 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.2808;AVGPOST=0.9940;RSQ=0.9908;ERATE=0.0011;THETA=0.0005;AC=610;AN=2184 GT:DS:GL:BD 0.27930403 0 1 104188108 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104188195 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.847;LDAF=0.0051;AVGPOST=0.9982;RSQ=0.8484;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104188216 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7150;ERATE=0.0002;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104188306 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0024;AVGPOST=0.9991;RSQ=0.8454;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104188325 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0769;AVGPOST=0.9987;RSQ=0.9937;ERATE=0.0003;THETA=0.0006;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 104188430 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0016;AVGPOST=0.9982;RSQ=0.5740;ERATE=0.0003;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104188455 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.987;LDAF=0.1051;AVGPOST=0.9962;RSQ=0.9850;ERATE=0.0004;THETA=0.0006;AC=229;AN=2184 GT:DS:GL:BD 0.10485348 0 1 104188466 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104188472 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7725;ERATE=0.0002;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104188548 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0267;AVGPOST=0.9995;RSQ=0.9900;ERATE=0.0003;THETA=0.0005;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 104188558 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0051;AVGPOST=0.9969;RSQ=0.7775;ERATE=0.0002;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104188621 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1197;AVGPOST=0.9979;RSQ=0.9938;ERATE=0.0003;THETA=0.0005;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 104188648 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0056;AVGPOST=0.9974;RSQ=0.8211;ERATE=0.0003;THETA=0.0011;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104188664 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0082;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104188802 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5337;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104188843 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104188854 . T TA 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.751;LDAF=0.0020;AVGPOST=0.9983;RSQ=0.6531;ERATE=0.0004;THETA=0.0024;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104188955 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.846;LDAF=0.8308;AVGPOST=0.9265;RSQ=0.8163;ERATE=0.0177;THETA=0.0006;AC=1846;AN=2184 GT:DS:GL:BD 0.84523809 1 1 104188977 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104189135 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5392;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104189141 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0048;AVGPOST=0.9984;RSQ=0.8623;ERATE=0.0008;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104189271 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.729;LDAF=0.0042;AVGPOST=0.9974;RSQ=0.7705;ERATE=0.0006;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104189278 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.9952;AVGPOST=0.9996;RSQ=0.9635;ERATE=0.0003;THETA=0.0007;AC=2174;AN=2184 GT:DS:GL:BD 0.99542123 1 1 104189360 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0047;AVGPOST=0.9951;RSQ=0.5854;ERATE=0.0012;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104189361 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5697;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104189431 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5929;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104189433 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0025;AVGPOST=0.9991;RSQ=0.8750;ERATE=0.0002;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104189440 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.697;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8928;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104189507 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0264;AVGPOST=0.9976;RSQ=0.9651;ERATE=0.0003;THETA=0.0004;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 104189520 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.698;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7683;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104189553 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6773;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104189555 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0100;AVGPOST=0.9957;RSQ=0.8479;ERATE=0.0004;THETA=0.0008;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104189678 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0083;AVGPOST=0.9987;RSQ=0.9334;ERATE=0.0004;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104189699 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0863;AVGPOST=0.9965;RSQ=0.9836;ERATE=0.0004;THETA=0.0004;AC=186;AN=2184 GT:DS:GL:BD 0.08516484 0 1 104189738 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6740;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104189772 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0229;AVGPOST=0.9993;RSQ=0.9879;ERATE=0.0003;THETA=0.0007;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 104189786 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5589;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104189831 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0062;AVGPOST=0.9995;RSQ=0.9643;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104189841 rs78363591 AAAC A 20329 PASS INDEL;BAVGPOST=0.995;BRSQ=0.986;LDAF=0.1993;AVGPOST=0.9950;RSQ=0.9874;ERATE=0.0008;THETA=0.0004;AC=436;AN=2184 GT:DS:GL:BD 0.19963370 0 1 104189902 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0043;AVGPOST=0.9975;RSQ=0.7629;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104189905 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.912;LDAF=0.0109;AVGPOST=0.9975;RSQ=0.8985;ERATE=0.0005;THETA=0.0001;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104190067 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.699;LDAF=0.0191;AVGPOST=0.9886;RSQ=0.7799;ERATE=0.0004;THETA=0.0006;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 104190130 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.726;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.4861;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104190154 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.951;LDAF=0.0202;AVGPOST=0.9967;RSQ=0.9389;ERATE=0.0006;THETA=0.0003;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 104190169 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.739;LDAF=0.0071;AVGPOST=0.9957;RSQ=0.7637;ERATE=0.0005;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104190270 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.858;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8599;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104190306 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0783;AVGPOST=0.9990;RSQ=0.9942;ERATE=0.0003;THETA=0.0005;AC=170;AN=2184 GT:DS:GL:BD 0.07783883 0 1 104190326 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5882;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104190335 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.939;LDAF=0.0834;AVGPOST=0.9914;RSQ=0.9615;ERATE=0.0007;THETA=0.0005;AC=184;AN=2184 GT:DS:GL:BD 0.08424909 0 1 104190398 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1066;AVGPOST=0.9957;RSQ=0.9847;ERATE=0.0004;THETA=0.0002;AC=233;AN=2184 GT:DS:GL:BD 0.10668498 0 1 104190425 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.509;LDAF=0.0126;AVGPOST=0.9885;RSQ=0.6400;ERATE=0.0009;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104190461 . C CA 9204 PASS INDEL;BAVGPOST=0.985;BRSQ=0.970;LDAF=0.3150;AVGPOST=0.9811;RSQ=0.9689;ERATE=0.0012;THETA=0.0003;AC=693;AN=2184 GT:DS:GL:BD 0.31730768 0 1 104190542 . A AC 30332 PASS INDEL;BAVGPOST=0.986;BRSQ=0.971;LDAF=0.3196;AVGPOST=0.9883;RSQ=0.9809;ERATE=0.0004;THETA=0.0008;AC=702;AN=2184 GT:DS:GL:BD 0.32142857 0 1 104190544 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.733;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5801;ERATE=0.0006;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104190573 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.607;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104190599 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0388;AVGPOST=0.9964;RSQ=0.9687;ERATE=0.0004;THETA=0.0003;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 104190612 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0364;AVGPOST=0.9985;RSQ=0.9835;ERATE=0.0004;THETA=0.0003;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 104190669 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0182;AVGPOST=0.9966;RSQ=0.9256;ERATE=0.0005;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104190683 . G GA 91 PASS INDEL;BAVGPOST=0.991;BRSQ=0.409;LDAF=0.0120;AVGPOST=0.9854;RSQ=0.5341;ERATE=0.0019;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104190683 . G GC 42 PASS INDEL;BAVGPOST=0.996;BRSQ=0.277;LDAF=0.0019;AVGPOST=0.9983;RSQ=0.5919;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104190686 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0867;AVGPOST=0.9980;RSQ=0.9896;ERATE=0.0003;THETA=0.0004;AC=189;AN=2184 GT:DS:GL:BD 0.08653846 0 1 104190706 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.973;LDAF=0.0860;AVGPOST=0.9984;RSQ=0.9918;ERATE=0.0003;THETA=0.0004;AC=187;AN=2184 GT:DS:GL:BD 0.08562271 0 1 104190722 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.650;LDAF=0.0061;AVGPOST=0.9973;RSQ=0.8149;ERATE=0.0005;THETA=0.0010;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104190740 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0100;AVGPOST=0.9975;RSQ=0.9005;ERATE=0.0007;THETA=0.0009;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104190780 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.678;LDAF=0.0037;AVGPOST=0.9986;RSQ=0.8257;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104190900 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.846;LDAF=0.0157;AVGPOST=0.9932;RSQ=0.8405;ERATE=0.0008;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 104190913 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0311;AVGPOST=0.9982;RSQ=0.9780;ERATE=0.0003;THETA=0.0004;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 104190956 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0306;AVGPOST=0.9981;RSQ=0.9800;ERATE=0.0004;THETA=0.0003;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 104191007 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6520;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104191092 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.932;LDAF=0.1223;AVGPOST=0.9722;RSQ=0.9171;ERATE=0.0055;THETA=0.0006;AC=258;AN=2184 GT:DS:GL:BD 0.11813187 0 1 104191145 rs111660035 GA G 2419 PASS INDEL;BAVGPOST=0.988;BRSQ=0.927;LDAF=0.0774;AVGPOST=0.9910;RSQ=0.9580;ERATE=0.0005;THETA=0.0012;AC=171;AN=2184 GT:DS:GL:BD 0.07829671 0 1 104191196 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.971;LDAF=0.0788;AVGPOST=0.9960;RSQ=0.9835;ERATE=0.0003;THETA=0.0007;AC=173;AN=2184 GT:DS:GL:BD 0.07921246 0 1 104191229 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0130;AVGPOST=0.9980;RSQ=0.9493;ERATE=0.0002;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104191234 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4934;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104191272 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.696;LDAF=0.9968;AVGPOST=0.9955;RSQ=0.4487;ERATE=0.0008;THETA=0.0004;AC=2179;AN=2184 GT:DS:GL:BD 0.99771065 1 1 104191299 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.972;LDAF=0.0805;AVGPOST=0.9980;RSQ=0.9902;ERATE=0.0003;THETA=0.0003;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 104191303 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.966;LDAF=0.0296;AVGPOST=0.9980;RSQ=0.9724;ERATE=0.0004;THETA=0.0004;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 104191459 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0036;AVGPOST=0.9966;RSQ=0.6092;ERATE=0.0007;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104191530 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0083;AVGPOST=0.9998;RSQ=0.9893;ERATE=0.0002;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104191566 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.876;LDAF=0.1066;AVGPOST=0.9851;RSQ=0.9409;ERATE=0.0011;THETA=0.0003;AC=229;AN=2184 GT:DS:GL:BD 0.10485348 0 1 104191687 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.882;LDAF=0.0130;AVGPOST=0.9972;RSQ=0.9256;ERATE=0.0003;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104191703 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.3497;AVGPOST=0.9960;RSQ=0.9932;ERATE=0.0007;THETA=0.0003;AC=766;AN=2184 GT:DS:GL:BD 0.35073259 0 1 104192069 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5407;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104192080 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.860;LDAF=0.0979;AVGPOST=0.9622;RSQ=0.8373;ERATE=0.0056;THETA=0.0011;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 104192095 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.704;LDAF=0.0246;AVGPOST=0.9783;RSQ=0.6676;ERATE=0.0017;THETA=0.0054;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 104192126 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.671;LDAF=0.0845;AVGPOST=0.9304;RSQ=0.6519;ERATE=0.0049;THETA=0.0007;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 104192128 . CTTG C 440 PASS INDEL;BAVGPOST=0.985;BRSQ=0.713;LDAF=0.0402;AVGPOST=0.9628;RSQ=0.6502;ERATE=0.0009;THETA=0.0010;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 104192332 . GTT G 259 PASS INDEL;BAVGPOST=0.985;BRSQ=0.713;LDAF=0.0221;AVGPOST=0.9857;RSQ=0.7397;ERATE=0.0006;THETA=0.0019;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 104192338 . T TA 50 PASS INDEL;BAVGPOST=0.985;BRSQ=0.338;LDAF=0.0098;AVGPOST=0.9896;RSQ=0.5718;ERATE=0.0010;THETA=0.0032;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104193359 . G GC 32 PASS INDEL;BAVGPOST=0.898;BRSQ=0.057;LDAF=0.1960;AVGPOST=0.7589;RSQ=0.3853;ERATE=0.0090;THETA=0.0055;AC=288;AN=2184 GT:DS:GL:BD 0.13186814 0 1 104198758 . GA G 192 PASS INDEL;BAVGPOST=0.680;BRSQ=0.027;LDAF=0.2276;AVGPOST=0.6767;RSQ=0.2307;ERATE=0.0207;THETA=0.0009;AC=204;AN=2184 GT:DS:GL:BD 0.09340660 0 1 104200828 . GA G 9 PASS INDEL;BAVGPOST=0.929;BRSQ=0.053;LDAF=0.1318;AVGPOST=0.8146;RSQ=0.3656;ERATE=0.0090;THETA=0.0006;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 104201960 . TAGG T 102 PASS INDEL;BAVGPOST=0.977;BRSQ=0.070;LDAF=0.0444;AVGPOST=0.9399;RSQ=0.4372;ERATE=0.0033;THETA=0.0045;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 104203170 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.6728;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104203245 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5826;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104203258 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0074;AVGPOST=0.9996;RSQ=0.9742;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104203286 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0071;AVGPOST=0.9994;RSQ=0.9623;ERATE=0.0003;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104203289 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2638;AVGPOST=0.9994;RSQ=0.9988;ERATE=0.0003;THETA=0.0005;AC=577;AN=2184 GT:DS:GL:BD 0.26419413 0 1 104203325 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6025;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104203413 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.7140;AVGPOST=0.9994;RSQ=0.9990;ERATE=0.0003;THETA=0.0004;AC=1558;AN=2184 GT:DS:GL:BD 0.71336997 1 1 104203457 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.1784;AVGPOST=0.9973;RSQ=0.9930;ERATE=0.0005;THETA=0.0005;AC=388;AN=2184 GT:DS:GL:BD 0.17765568 0 1 104203521 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104203572 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104203639 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0016;AVGPOST=0.9982;RSQ=0.5399;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104203723 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.6045;ERATE=0.0003;THETA=0.0017;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104203832 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2758;AVGPOST=0.9985;RSQ=0.9970;ERATE=0.0004;THETA=0.0009;AC=603;AN=2184 GT:DS:GL:BD 0.27609891 0 1 104203967 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0044;AVGPOST=0.9987;RSQ=0.8870;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104203983 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0031;AVGPOST=0.9995;RSQ=0.9430;ERATE=0.0003;THETA=0.0016;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104203989 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.710;LDAF=0.0021;AVGPOST=0.9967;RSQ=0.3677;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104204057 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0148;AVGPOST=0.9986;RSQ=0.9642;ERATE=0.0004;THETA=0.0026;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 104204089 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.853;LDAF=0.0096;AVGPOST=0.9991;RSQ=0.9553;ERATE=0.0004;THETA=0.0007;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104204158 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9926;AVGPOST=0.9997;RSQ=0.9821;ERATE=0.0003;THETA=0.0010;AC=2168;AN=2184 GT:DS:GL:BD 0.99267399 1 1 104204165 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0080;AVGPOST=0.9956;RSQ=0.7780;ERATE=0.0006;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104204502 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.894;LDAF=0.0211;AVGPOST=0.9963;RSQ=0.9303;ERATE=0.0005;THETA=0.0005;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 104204690 . TA T 101 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9310;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104204743 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9915;AVGPOST=0.9978;RSQ=0.8939;ERATE=0.0005;THETA=0.0015;AC=2168;AN=2184 GT:DS:GL:BD 0.99267399 1 1 104204810 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.705;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7320;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104204823 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.6908;ERATE=0.0004;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104204884 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5871;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104204939 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0770;AVGPOST=0.9976;RSQ=0.9896;ERATE=0.0003;THETA=0.0006;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 104204954 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6519;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104204955 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.980;LDAF=0.0480;AVGPOST=0.9977;RSQ=0.9824;ERATE=0.0005;THETA=0.0008;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 104204983 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0023;AVGPOST=0.9963;RSQ=0.4123;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104205117 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4733;ERATE=0.0004;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104205259 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0033;AVGPOST=0.9980;RSQ=0.7539;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104205306 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8162;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104205414 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6262;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104205462 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.3770;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104205769 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104205912 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0165;AVGPOST=0.9984;RSQ=0.9664;ERATE=0.0003;THETA=0.0013;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 104206044 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.685;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7052;ERATE=0.0003;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104206052 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.911;LDAF=0.0038;AVGPOST=0.9990;RSQ=0.8626;ERATE=0.0005;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104206055 . AC A 268 PASS INDEL;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0034;AVGPOST=0.9989;RSQ=0.8543;ERATE=0.0006;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104206097 . C CT 18 PASS INDEL;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0021;AVGPOST=0.9976;RSQ=0.5724;ERATE=0.0009;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104206244 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8439;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104206272 . AT A 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7111;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104206343 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1453;AVGPOST=0.9991;RSQ=0.9982;ERATE=0.0003;THETA=0.0010;AC=317;AN=2184 GT:DS:GL:BD 0.14514652 0 1 104206426 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8577;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104206476 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1457;AVGPOST=0.9977;RSQ=0.9953;ERATE=0.0004;THETA=0.0006;AC=317;AN=2184 GT:DS:GL:BD 0.14514652 0 1 104206522 rs71783719 ACTGT A 17522 PASS INDEL;BAVGPOST=0.995;BRSQ=0.980;LDAF=0.1263;AVGPOST=0.9962;RSQ=0.9872;ERATE=0.0006;THETA=0.0005;AC=278;AN=2184 GT:DS:GL:BD 0.12728938 0 1 104206630 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0566;AVGPOST=0.9968;RSQ=0.9810;ERATE=0.0004;THETA=0.0014;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 104206705 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0035;AVGPOST=0.9992;RSQ=0.8928;ERATE=0.0003;THETA=0.0033;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104206772 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0043;AVGPOST=0.9978;RSQ=0.8066;ERATE=0.0005;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104206788 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104206928 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4744;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104207003 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.711;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6983;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104207018 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.753;LDAF=0.0032;AVGPOST=0.9961;RSQ=0.5234;ERATE=0.0006;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104207068 rs59388919 TAAC T 8791 PASS INDEL;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0624;AVGPOST=0.9983;RSQ=0.9901;ERATE=0.0004;THETA=0.0011;AC=135;AN=2184 GT:DS:GL:BD 0.06181319 0 1 104207079 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.642;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7337;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104207111 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5647;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104207136 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.766;LDAF=0.0069;AVGPOST=0.9963;RSQ=0.7817;ERATE=0.0003;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104207146 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.1471;AVGPOST=0.9957;RSQ=0.9911;ERATE=0.0006;THETA=0.0012;AC=318;AN=2184 GT:DS:GL:BD 0.14560440 0 1 104207204 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9989;RSQ=0.8931;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104207249 . C CT 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.728;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5064;ERATE=0.0005;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104207255 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8344;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104207295 . G GC 239 PASS INDEL;BAVGPOST=0.998;BRSQ=0.795;LDAF=0.0070;AVGPOST=0.9919;RSQ=0.5433;ERATE=0.0019;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104207343 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7775;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104207396 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9927;AVGPOST=0.9984;RSQ=0.9199;ERATE=0.0004;THETA=0.0018;AC=2168;AN=2184 GT:DS:GL:BD 0.99267399 1 1 104207403 . GAAAAT G 170 PASS INDEL;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5389;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104207422 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6804;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104207429 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.735;LDAF=0.0024;AVGPOST=0.9982;RSQ=0.7038;ERATE=0.0005;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104207469 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0036;AVGPOST=0.9991;RSQ=0.8920;ERATE=0.0004;THETA=0.0013;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104207521 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8394;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104207529 rs61309730 CTCAT C 1044 PASS INDEL;BAVGPOST=0.995;BRSQ=0.761;LDAF=0.0137;AVGPOST=0.9906;RSQ=0.7355;ERATE=0.0015;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104207554 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7125;AVGPOST=0.9963;RSQ=0.9936;ERATE=0.0005;THETA=0.0009;AC=1555;AN=2184 GT:DS:GL:BD 0.71199632 1 1 104207567 . G GT 107 PASS INDEL;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0053;AVGPOST=0.9967;RSQ=0.7369;ERATE=0.0007;THETA=0.0017;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104207649 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0020;AVGPOST=0.9982;RSQ=0.6610;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104207698 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6195;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104207773 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5682;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104207859 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0290;AVGPOST=0.9971;RSQ=0.9618;ERATE=0.0004;THETA=0.0005;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 104208094 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104208118 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0157;AVGPOST=0.9997;RSQ=0.9914;ERATE=0.0003;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 104208191 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9910;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104208194 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104208286 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4352;AVGPOST=0.9969;RSQ=0.9943;ERATE=0.0006;THETA=0.0004;AC=950;AN=2184 GT:DS:GL:BD 0.43498167 0 1 104208291 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.5365;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104208341 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.4294;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104208465 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0053;AVGPOST=0.9994;RSQ=0.9546;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104208477 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7940;ERATE=0.0005;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104208490 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0059;AVGPOST=0.9993;RSQ=0.9467;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104208549 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.5137;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104208605 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9721;ERATE=0.0003;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104208623 . TA T 417 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0040;AVGPOST=0.9985;RSQ=0.8753;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104208644 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0062;AVGPOST=0.9981;RSQ=0.8824;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104208648 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9881;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104208757 rs34388541 GA G 16199 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1632;AVGPOST=0.9980;RSQ=0.9935;ERATE=0.0004;THETA=0.0003;AC=354;AN=2184 GT:DS:GL:BD 0.16208792 0 1 104208797 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8756;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104208826 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0159;AVGPOST=0.9993;RSQ=0.9776;ERATE=0.0005;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 104208966 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0031;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104208968 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0089;AVGPOST=0.9993;RSQ=0.9639;ERATE=0.0004;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104208985 . CA C 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.718;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6715;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104209067 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8198;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104209083 . GAA G 2362 PASS INDEL;BAVGPOST=0.616;BRSQ=0.348;LDAF=0.4233;AVGPOST=0.6588;RSQ=0.4433;ERATE=0.0732;THETA=0.0005;AC=840;AN=2184 GT:DS:GL:BD 0.38461539 0 1 104209084 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6228;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104209112 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6327;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104209200 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0181;AVGPOST=0.9984;RSQ=0.9695;ERATE=0.0004;THETA=0.0007;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 104209260 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9766;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104209335 . C CA 932 PASS INDEL;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0124;AVGPOST=0.9972;RSQ=0.9118;ERATE=0.0005;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104209372 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.9746;AVGPOST=0.9980;RSQ=0.9706;ERATE=0.0003;THETA=0.0003;AC=2128;AN=2184 GT:DS:GL:BD 0.97435898 1 1 104209509 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.848;LDAF=0.0093;AVGPOST=0.9988;RSQ=0.9485;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104209660 . A AT 430 PASS INDEL;BAVGPOST=0.996;BRSQ=0.663;LDAF=0.0062;AVGPOST=0.9975;RSQ=0.8359;ERATE=0.0003;THETA=0.0001;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104209674 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0075;AVGPOST=0.9995;RSQ=0.9682;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104209716 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104209787 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4319;AVGPOST=0.9979;RSQ=0.9964;ERATE=0.0003;THETA=0.0003;AC=942;AN=2184 GT:DS:GL:BD 0.43131867 0 1 104209838 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9474;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104209852 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104209983 . C CA 24 PASS INDEL;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7682;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104210012 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0038;AVGPOST=0.9989;RSQ=0.9111;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104210032 . T TG 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6343;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104210072 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.776;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6445;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104210249 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.2382;AVGPOST=0.9979;RSQ=0.9948;ERATE=0.0006;THETA=0.0003;AC=520;AN=2184 GT:DS:GL:BD 0.23809524 0 1 104210344 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5790;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104210407 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0013;AVGPOST=0.9998;RSQ=0.9270;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104210523 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0029;AVGPOST=0.9993;RSQ=0.8890;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104210591 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0156;AVGPOST=0.9999;RSQ=0.9971;ERATE=0.0003;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 104210607 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9678;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104210680 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8646;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104210686 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5574;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104210764 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7950;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104210777 MERGED_DEL_2_4576 AGTATGGAAAACAGTTCTGCCATCAGAGTTTACTCTTTTCTGTCATGTTTTCTTCACTACCTCCATCTATAGTTTGCATATTTTGTCTGCTAATTTGCCAGTCACCAAGTGGCAACCATCTTTAACATCATGACCCAAAAAAACTTGGTTACAATCCCTAACCTGGGACCACAAATCTCTGTTGTGCTTT A . . SV;BAVGPOST=0.998;BRSQ=0.867;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0003;THETA=0.0005;CIEND=-20;30;CIPOS=-23;17;END=106407804;HOMLEN=2;HOMSEQ=GT;SOURCE=EMBLdelly_106404277_106407805;G GT:DS:GL:BD 0.00091575 0 1 104210813 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5286;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104210838 . TAG T 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5281;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104210882 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0020;AVGPOST=0.9989;RSQ=0.8194;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104210922 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8841;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104211085 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0080;AVGPOST=0.9988;RSQ=0.9515;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104211107 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0122;AVGPOST=0.9979;RSQ=0.9227;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104211169 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104211215 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2641;AVGPOST=0.9982;RSQ=0.9963;ERATE=0.0004;THETA=0.0003;AC=576;AN=2184 GT:DS:GL:BD 0.26373628 0 1 104211243 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0075;AVGPOST=0.9995;RSQ=0.9693;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104211304 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0053;AVGPOST=0.9988;RSQ=0.9210;ERATE=0.0003;THETA=0.0011;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104211379 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6340;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104211508 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4481;AVGPOST=0.9984;RSQ=0.9970;ERATE=0.0004;THETA=0.0005;AC=978;AN=2184 GT:DS:GL:BD 0.44780219 0 1 104211576 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0025;AVGPOST=0.9988;RSQ=0.8209;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104211624 rs71092015 GCTAA G 29636 PASS INDEL;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.2369;AVGPOST=0.9956;RSQ=0.9896;ERATE=0.0012;THETA=0.0010;AC=518;AN=2184 GT:DS:GL:BD 0.23717949 0 1 104211713 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5924;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104211927 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.749;LDAF=0.0031;AVGPOST=0.9976;RSQ=0.6767;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104212185 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.951;LDAF=0.2328;AVGPOST=0.9846;RSQ=0.9652;ERATE=0.0027;THETA=0.0006;AC=513;AN=2184 GT:DS:GL:BD 0.23489010 0 1 104212311 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0028;AVGPOST=0.9981;RSQ=0.6901;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104212331 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.929;BRSQ=0.453;LDAF=0.8894;AVGPOST=0.8564;RSQ=0.4150;ERATE=0.0306;THETA=0.0003;AC=2048;AN=2184 GT:DS:GL:BD 0.93772894 1 1 104212340 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0134;AVGPOST=0.9931;RSQ=0.7991;ERATE=0.0007;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104212341 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.903;LDAF=0.1614;AVGPOST=0.9859;RSQ=0.9591;ERATE=0.0010;THETA=0.0006;AC=349;AN=2184 GT:DS:GL:BD 0.15979853 0 1 104212364 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.759;LDAF=0.0136;AVGPOST=0.9944;RSQ=0.8418;ERATE=0.0007;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104212403 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8515;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104212479 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.667;LDAF=0.0483;AVGPOST=0.9591;RSQ=0.6576;ERATE=0.0050;THETA=0.0006;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 104212482 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.903;BRSQ=0.808;LDAF=0.4822;AVGPOST=0.8496;RSQ=0.7453;ERATE=0.0419;THETA=0.0004;AC=1056;AN=2184 GT:DS:GL:BD 0.48351648 0 1 104212485 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.780;LDAF=0.0099;AVGPOST=0.9947;RSQ=0.7785;ERATE=0.0004;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104212606 . GT G 6245 PASS INDEL;BAVGPOST=0.999;BRSQ=0;LDAF=0.9965;AVGPOST=0.9931;RSQ=0.2112;ERATE=0.0008;THETA=0.0005;AC=2183;AN=2184 GT:DS:GL:BD 0.99954212 1 1 104212791 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9577;AVGPOST=0.9989;RSQ=0.9890;ERATE=0.0003;THETA=0.0007;AC=2092;AN=2184 GT:DS:GL:BD 0.95787543 1 1 104213279 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5468;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104213308 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0089;AVGPOST=0.9987;RSQ=0.9520;ERATE=0.0003;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104213310 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6078;AVGPOST=0.9983;RSQ=0.9969;ERATE=0.0009;THETA=0.0003;AC=1327;AN=2184 GT:DS:GL:BD 0.60760075 1 1 104213328 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6079;AVGPOST=0.9992;RSQ=0.9985;ERATE=0.0003;THETA=0.0003;AC=1327;AN=2184 GT:DS:GL:BD 0.60760075 1 1 104213459 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0328;AVGPOST=0.9974;RSQ=0.9677;ERATE=0.0004;THETA=0.0005;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 104213528 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6772;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104213612 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8349;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104213648 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7459;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104213802 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0035;AVGPOST=0.9984;RSQ=0.8490;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104213855 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.918;LDAF=0.0207;AVGPOST=0.9952;RSQ=0.9090;ERATE=0.0018;THETA=0.0007;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 104213884 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1125;AVGPOST=0.9988;RSQ=0.9950;ERATE=0.0005;THETA=0.0004;AC=246;AN=2184 GT:DS:GL:BD 0.11263736 0 1 104213902 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.933;LDAF=0.0036;AVGPOST=0.9977;RSQ=0.7494;ERATE=0.0005;THETA=0.0014;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104213928 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104213970 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104213983 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1286;AVGPOST=0.9992;RSQ=0.9971;ERATE=0.0003;THETA=0.0002;AC=280;AN=2184 GT:DS:GL:BD 0.12820514 0 1 104214007 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0063;AVGPOST=0.9991;RSQ=0.9453;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104214059 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.787;LDAF=0.0031;AVGPOST=0.9990;RSQ=0.8588;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104214183 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0670;AVGPOST=0.9994;RSQ=0.9956;ERATE=0.0003;THETA=0.0002;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 104214201 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0017;AVGPOST=0.9986;RSQ=0.6846;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104214253 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0030;AVGPOST=0.9986;RSQ=0.8316;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104214306 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.762;LDAF=0.0032;AVGPOST=0.9995;RSQ=0.9252;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104214428 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104214451 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7694;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104214509 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0022;AVGPOST=0.9964;RSQ=0.3647;ERATE=0.0006;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104214653 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.973;LDAF=0.1106;AVGPOST=0.9981;RSQ=0.9920;ERATE=0.0004;THETA=0.0005;AC=243;AN=2184 GT:DS:GL:BD 0.11126374 0 1 104214681 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.748;LDAF=0.0049;AVGPOST=0.9982;RSQ=0.8855;ERATE=0.0004;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104214749 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0037;AVGPOST=0.9987;RSQ=0.8615;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104214805 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5183;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104214818 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6314;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104214820 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1262;AVGPOST=0.9976;RSQ=0.9916;ERATE=0.0005;THETA=0.0006;AC=273;AN=2184 GT:DS:GL:BD 0.12500000 0 1 104214845 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0061;AVGPOST=0.9982;RSQ=0.8884;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104214902 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6101;AVGPOST=0.9960;RSQ=0.9938;ERATE=0.0005;THETA=0.0025;AC=1332;AN=2184 GT:DS:GL:BD 0.60989010 1 1 104214930 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.723;LDAF=0.0031;AVGPOST=0.9967;RSQ=0.6085;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104215019 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0023;AVGPOST=0.9987;RSQ=0.7628;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104215189 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.947;LDAF=0.5969;AVGPOST=0.9324;RSQ=0.8982;ERATE=0.0070;THETA=0.0004;AC=1320;AN=2184 GT:DS:GL:BD 0.60439563 1 1 104215242 rs34439201 T TA 699 PASS INDEL;BAVGPOST=0.877;BRSQ=0.408;LDAF=0.1467;AVGPOST=0.8516;RSQ=0.5437;ERATE=0.0112;THETA=0.0008;AC=244;AN=2184 GT:DS:GL:BD 0.11172161 0 1 104215270 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.880;LDAF=0.0096;AVGPOST=0.9965;RSQ=0.8631;ERATE=0.0004;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104215520 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.6873;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104215638 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0009;AVGPOST=0.9987;RSQ=0.3556;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104215714 . TTTTG T 87 PASS INDEL;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5952;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104215782 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5122;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104215831 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7491;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104215900 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104215971 rs5776871 C CTGAT 4890 PASS INDEL;BAVGPOST=0.998;BRSQ=0.975;LDAF=0.0256;AVGPOST=0.9947;RSQ=0.9242;ERATE=0.0004;THETA=0.0005;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 104215988 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.9147;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104216004 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.709;LDAF=0.0041;AVGPOST=0.9976;RSQ=0.7619;ERATE=0.0006;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104216085 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6173;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104216302 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0665;AVGPOST=0.9975;RSQ=0.9850;ERATE=0.0005;THETA=0.0006;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 104216482 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.722;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6922;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104216495 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7021;ERATE=0.0006;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104216572 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8611;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104216601 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6102;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104216794 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0034;AVGPOST=0.9992;RSQ=0.8969;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104216863 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6055;AVGPOST=0.9975;RSQ=0.9955;ERATE=0.0008;THETA=0.0024;AC=1323;AN=2184 GT:DS:GL:BD 0.60576922 1 1 104216924 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5320;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104216994 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5934;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104217074 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9614;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104217089 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5070;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104217136 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5512;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104217217 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104217305 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6465;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104217413 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6080;AVGPOST=0.9971;RSQ=0.9957;ERATE=0.0005;THETA=0.0009;AC=1327;AN=2184 GT:DS:GL:BD 0.60760075 1 1 104217768 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.958;LDAF=0.0211;AVGPOST=0.9987;RSQ=0.9766;ERATE=0.0004;THETA=0.0004;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 104217959 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0036;AVGPOST=0.9993;RSQ=0.9260;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104218138 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6306;AVGPOST=0.9985;RSQ=0.9978;ERATE=0.0004;THETA=0.0005;AC=1376;AN=2184 GT:DS:GL:BD 0.63003665 1 1 104218164 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104218238 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104218243 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6419;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104218281 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1208;AVGPOST=0.9993;RSQ=0.9974;ERATE=0.0003;THETA=0.0005;AC=265;AN=2184 GT:DS:GL:BD 0.12133700 0 1 104218319 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7521;AVGPOST=0.9992;RSQ=0.9983;ERATE=0.0005;THETA=0.0003;AC=1643;AN=2184 GT:DS:GL:BD 0.75228935 1 1 104218347 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8091;AVGPOST=0.9970;RSQ=0.9929;ERATE=0.0003;THETA=0.0005;AC=1768;AN=2184 GT:DS:GL:BD 0.80952382 1 1 104218367 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8100;AVGPOST=0.9973;RSQ=0.9935;ERATE=0.0006;THETA=0.0002;AC=1772;AN=2184 GT:DS:GL:BD 0.81135529 1 1 104218393 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104218583 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9197;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104218630 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6786;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104218648 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0037;AVGPOST=0.9989;RSQ=0.8764;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104218653 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.6662;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104218658 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6200;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104218717 . TTGC T 160 PASS INDEL;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.7098;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104218778 . T TA 48 PASS INDEL;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0011;AVGPOST=0.9984;RSQ=0.4031;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104218819 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.810;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8202;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104218875 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104218892 . CA C 175 PASS INDEL;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8538;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104218964 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7348;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104218977 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0024;AVGPOST=0.9981;RSQ=0.7285;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104218978 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0056;AVGPOST=0.9990;RSQ=0.9298;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104219050 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8779;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104219089 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0057;AVGPOST=0.9983;RSQ=0.8747;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104219104 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0040;AVGPOST=0.9991;RSQ=0.9234;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104219188 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.716;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5608;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104219242 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1272;AVGPOST=0.9987;RSQ=0.9960;ERATE=0.0003;THETA=0.0002;AC=279;AN=2184 GT:DS:GL:BD 0.12774725 0 1 104219350 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.5110;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104219362 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0530;AVGPOST=0.9973;RSQ=0.9805;ERATE=0.0004;THETA=0.0027;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 104219391 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.799;LDAF=0.0025;AVGPOST=0.9976;RSQ=0.5727;ERATE=0.0017;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104219487 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5574;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104219538 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7687;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104219697 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.750;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7406;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104219723 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5682;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104219739 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.925;LDAF=0.0173;AVGPOST=0.9988;RSQ=0.9686;ERATE=0.0003;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104219794 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6253;AVGPOST=0.9978;RSQ=0.9967;ERATE=0.0005;THETA=0.0003;AC=1364;AN=2184 GT:DS:GL:BD 0.62454212 1 1 104219842 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104220118 rs71913635 CTATT C 6735 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0227;AVGPOST=0.9991;RSQ=0.9837;ERATE=0.0003;THETA=0.0004;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 104220335 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5908;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104220389 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.6162;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104220403 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0142;AVGPOST=0.9999;RSQ=0.9956;ERATE=0.0003;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 104220501 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7193;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104220608 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.871;LDAF=0.0029;AVGPOST=0.9984;RSQ=0.7965;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104220649 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5316;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104220843 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=0.9988;RSQ=0.9111;ERATE=0.0005;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104220908 . T TG 21 PASS INDEL;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5160;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104220908 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9545;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104220915 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8230;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104220949 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8879;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104221059 rs34533731 TA T 26883 PASS INDEL;BAVGPOST=0.992;BRSQ=0.981;LDAF=0.2561;AVGPOST=0.9790;RSQ=0.9615;ERATE=0.0014;THETA=0.0003;AC=558;AN=2184 GT:DS:GL:BD 0.25549451 0 1 104221096 . AT A 1332 PASS INDEL;BAVGPOST=0.900;BRSQ=0.745;LDAF=0.1943;AVGPOST=0.9129;RSQ=0.8227;ERATE=0.0031;THETA=0.0004;AC=437;AN=2184 GT:DS:GL:BD 0.20009157 0 1 104221098 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0039;AVGPOST=0.9993;RSQ=0.9195;ERATE=0.0003;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104221109 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104221307 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.846;LDAF=0.0054;AVGPOST=0.9985;RSQ=0.8929;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104221386 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5013;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104221580 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0021;AVGPOST=0.9983;RSQ=0.6571;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104221597 . G GA 19 PASS INDEL;BAVGPOST=0.993;BRSQ=0.510;LDAF=0.0101;AVGPOST=0.9852;RSQ=0.4103;ERATE=0.0040;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104221725 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.990;LDAF=0.2601;AVGPOST=0.9930;RSQ=0.9863;ERATE=0.0009;THETA=0.0009;AC=567;AN=2184 GT:DS:GL:BD 0.25961539 0 1 104222013 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7719;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104222033 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5835;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104222044 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0224;AVGPOST=0.9991;RSQ=0.9829;ERATE=0.0003;THETA=0.0005;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 104222136 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.663;LDAF=0.0046;AVGPOST=0.9969;RSQ=0.7326;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104222186 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.734;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4176;ERATE=0.0006;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104222204 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.582;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4553;ERATE=0.0007;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104222288 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.647;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5736;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104222355 rs35876111 G GA 320 PASS INDEL;BAVGPOST=0.981;BRSQ=0.633;LDAF=0.0434;AVGPOST=0.9585;RSQ=0.5949;ERATE=0.0070;THETA=0.0007;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 104222360 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104222438 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5603;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104222465 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6113;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104222645 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.9469;AVGPOST=0.9996;RSQ=0.9969;ERATE=0.0003;THETA=0.0004;AC=2068;AN=2184 GT:DS:GL:BD 0.94688642 1 1 104222675 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0409;AVGPOST=0.9991;RSQ=0.9918;ERATE=0.0003;THETA=0.0009;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 104222758 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.912;LDAF=0.0085;AVGPOST=0.9979;RSQ=0.9136;ERATE=0.0003;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104222835 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5869;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104222952 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6303;AVGPOST=0.9961;RSQ=0.9945;ERATE=0.0004;THETA=0.0003;AC=1378;AN=2184 GT:DS:GL:BD 0.63095236 1 1 104223068 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.936;LDAF=0.0327;AVGPOST=0.9969;RSQ=0.9658;ERATE=0.0003;THETA=0.0005;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 104223090 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0225;AVGPOST=0.9995;RSQ=0.9912;ERATE=0.0003;THETA=0.0004;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 104223116 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0021;AVGPOST=0.9990;RSQ=0.8419;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104223191 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0026;AVGPOST=0.9988;RSQ=0.7994;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104223206 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0915;AVGPOST=0.9990;RSQ=0.9954;ERATE=0.0005;THETA=0.0005;AC=200;AN=2184 GT:DS:GL:BD 0.09157509 0 1 104223496 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.806;LDAF=0.0028;AVGPOST=0.9980;RSQ=0.6832;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104223795 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0579;AVGPOST=0.9992;RSQ=0.9930;ERATE=0.0004;THETA=0.0004;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 104223805 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104223884 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0267;AVGPOST=0.9995;RSQ=0.9917;ERATE=0.0004;THETA=0.0004;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 104223913 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.984;LDAF=0.0341;AVGPOST=0.9976;RSQ=0.9767;ERATE=0.0003;THETA=0.0004;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 104224205 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6005;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104224207 . CTGA C 507 PASS INDEL;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0035;AVGPOST=0.9987;RSQ=0.8489;ERATE=0.0005;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104224291 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0593;AVGPOST=0.9981;RSQ=0.9857;ERATE=0.0004;THETA=0.0005;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 104224411 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.729;LDAF=0.0029;AVGPOST=0.9958;RSQ=0.4678;ERATE=0.0004;THETA=0.0024;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104224415 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.710;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4704;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104224463 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0032;AVGPOST=0.9996;RSQ=0.9497;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104224693 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8488;AVGPOST=0.9970;RSQ=0.9912;ERATE=0.0007;THETA=0.0006;AC=1856;AN=2184 GT:DS:GL:BD 0.84981686 1 1 104224700 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0014;AVGPOST=0.9994;RSQ=0.8028;ERATE=0.0008;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104224730 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.7056;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104224960 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0576;AVGPOST=0.9997;RSQ=0.9976;ERATE=0.0003;THETA=0.0007;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 104224964 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8454;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104224985 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6426;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104225097 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0261;AVGPOST=0.9979;RSQ=0.9742;ERATE=0.0003;THETA=0.0006;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 104225169 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.806;LDAF=0.0031;AVGPOST=0.9988;RSQ=0.8165;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104225177 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0031;AVGPOST=0.9992;RSQ=0.9041;ERATE=0.0004;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104225238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104225312 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0028;AVGPOST=0.9996;RSQ=0.9334;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104225326 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.830;LDAF=0.0033;AVGPOST=0.9982;RSQ=0.8168;ERATE=0.0004;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104225333 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104225345 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0928;AVGPOST=0.9968;RSQ=0.9874;ERATE=0.0005;THETA=0.0006;AC=201;AN=2184 GT:DS:GL:BD 0.09203297 0 1 104225414 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0027;AVGPOST=0.9980;RSQ=0.6771;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104225427 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.640;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5035;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104225465 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5922;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104225608 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.965;LDAF=0.8401;AVGPOST=0.9835;RSQ=0.9503;ERATE=0.0019;THETA=0.0008;AC=1848;AN=2184 GT:DS:GL:BD 0.84615386 1 1 104225619 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.760;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4156;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104225621 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.967;LDAF=0.0422;AVGPOST=0.9970;RSQ=0.9714;ERATE=0.0005;THETA=0.0008;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 104225749 . TATTA T 150 PASS INDEL;BAVGPOST=0.999;BRSQ=0.704;LDAF=0.0037;AVGPOST=0.9943;RSQ=0.3885;ERATE=0.0007;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104225811 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.976;LDAF=0.6912;AVGPOST=0.9885;RSQ=0.9814;ERATE=0.0022;THETA=0.0007;AC=1513;AN=2184 GT:DS:GL:BD 0.69276559 1 1 104225857 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.975;LDAF=0.0590;AVGPOST=0.9987;RSQ=0.9891;ERATE=0.0004;THETA=0.0004;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 104225905 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0047;AVGPOST=0.9950;RSQ=0.5560;ERATE=0.0009;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104225906 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.850;LDAF=0.0035;AVGPOST=0.9963;RSQ=0.5389;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104225952 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0029;AVGPOST=0.9978;RSQ=0.6668;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104226014 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0029;AVGPOST=0.9990;RSQ=0.8546;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104226102 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.6942;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104226220 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0027;AVGPOST=0.9986;RSQ=0.7968;ERATE=0.0004;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104226476 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.880;LDAF=0.0076;AVGPOST=0.9964;RSQ=0.8099;ERATE=0.0005;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104226539 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6432;AVGPOST=0.9986;RSQ=0.9978;ERATE=0.0004;THETA=0.0014;AC=1405;AN=2184 GT:DS:GL:BD 0.64331502 1 1 104226636 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6429;AVGPOST=0.9982;RSQ=0.9972;ERATE=0.0006;THETA=0.0009;AC=1405;AN=2184 GT:DS:GL:BD 0.64331502 1 1 104226740 . A AC 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6630;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104226794 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.790;LDAF=0.0041;AVGPOST=0.9994;RSQ=0.9294;ERATE=0.0005;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104226810 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0582;AVGPOST=0.9994;RSQ=0.9954;ERATE=0.0003;THETA=0.0005;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 104227026 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0582;AVGPOST=0.9993;RSQ=0.9950;ERATE=0.0003;THETA=0.0006;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 104227028 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8763;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104227060 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.824;LDAF=0.0040;AVGPOST=0.9991;RSQ=0.9006;ERATE=0.0007;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104227112 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104227194 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6441;AVGPOST=0.9984;RSQ=0.9977;ERATE=0.0005;THETA=0.0005;AC=1405;AN=2184 GT:DS:GL:BD 0.64331502 1 1 104227202 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0030;AVGPOST=0.9979;RSQ=0.7384;ERATE=0.0005;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104227259 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0024;AVGPOST=0.9992;RSQ=0.8742;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104227474 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.602;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.3794;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104227540 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.957;LDAF=0.1500;AVGPOST=0.9953;RSQ=0.9868;ERATE=0.0010;THETA=0.0007;AC=328;AN=2184 GT:DS:GL:BD 0.15018316 0 1 104227559 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.551;LDAF=0.0241;AVGPOST=0.9740;RSQ=0.5561;ERATE=0.0069;THETA=0.0008;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 104227561 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0028;AVGPOST=0.9979;RSQ=0.6722;ERATE=0.0006;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104227563 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0581;AVGPOST=0.9988;RSQ=0.9908;ERATE=0.0004;THETA=0.0008;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 104227587 . GC G 25 PASS INDEL;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6035;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104227588 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6431;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104227677 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0682;AVGPOST=0.9995;RSQ=0.9963;ERATE=0.0003;THETA=0.0006;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 104227799 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104227895 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.7349;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104227946 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.881;LDAF=0.0144;AVGPOST=0.9955;RSQ=0.8850;ERATE=0.0004;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104228001 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3339;AVGPOST=0.9958;RSQ=0.9931;ERATE=0.0006;THETA=0.0004;AC=726;AN=2184 GT:DS:GL:BD 0.33241758 0 1 104228008 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.716;LDAF=0.0025;AVGPOST=0.9979;RSQ=0.6929;ERATE=0.0005;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104228012 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104228018 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0029;AVGPOST=0.9968;RSQ=0.6065;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104228278 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.795;LDAF=0.0089;AVGPOST=0.9921;RSQ=0.6630;ERATE=0.0009;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104228301 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0024;AVGPOST=0.9986;RSQ=0.7563;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104228380 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0045;AVGPOST=0.9991;RSQ=0.9168;ERATE=0.0004;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104228394 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.634;LDAF=0.0027;AVGPOST=0.9957;RSQ=0.4797;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104228601 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.968;LDAF=0.0171;AVGPOST=0.9959;RSQ=0.9161;ERATE=0.0003;THETA=0.0049;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 104228604 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6628;ERATE=0.0008;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104228739 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6111;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104228745 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.621;LDAF=0.0026;AVGPOST=0.9974;RSQ=0.6729;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104228746 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8597;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104228847 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0624;AVGPOST=0.9992;RSQ=0.9942;ERATE=0.0004;THETA=0.0005;AC=135;AN=2184 GT:DS:GL:BD 0.06181319 0 1 104228851 . AG A 145 PASS INDEL;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5447;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104228859 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5471;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104229023 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.755;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7368;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104229099 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7705;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104229174 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0625;AVGPOST=0.9993;RSQ=0.9949;ERATE=0.0004;THETA=0.0006;AC=135;AN=2184 GT:DS:GL:BD 0.06181319 0 1 104229197 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0033;AVGPOST=0.9955;RSQ=0.5053;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104229540 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0073;AVGPOST=0.9990;RSQ=0.9396;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104229784 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.7477;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104229863 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.941;LDAF=0.0154;AVGPOST=0.9980;RSQ=0.9542;ERATE=0.0003;THETA=0.0007;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 104229890 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.6475;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104229950 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0038;AVGPOST=0.9988;RSQ=0.8860;ERATE=0.0003;THETA=0.0016;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104230015 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.951;LDAF=0.8471;AVGPOST=0.9825;RSQ=0.9520;ERATE=0.0008;THETA=0.0003;AC=1852;AN=2184 GT:DS:GL:BD 0.84798533 1 1 104230031 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104230040 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0059;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104230220 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9221;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104230233 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6538;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104230240 . G GGC 913 PASS INDEL;BAVGPOST=0.939;BRSQ=0.363;LDAF=0.0548;AVGPOST=0.9338;RSQ=0.5109;ERATE=0.0016;THETA=0.0015;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 104230384 . G GGA 369 PASS INDEL;BAVGPOST=0.950;BRSQ=0.445;LDAF=0.0691;AVGPOST=0.9118;RSQ=0.4887;ERATE=0.0055;THETA=0.0002;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 104230386 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.782;LDAF=0.0202;AVGPOST=0.9882;RSQ=0.7727;ERATE=0.0008;THETA=0.0003;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 104230387 . G GGGT 128 PASS INDEL;BAVGPOST=0.976;BRSQ=0.326;LDAF=0.0519;AVGPOST=0.9394;RSQ=0.5254;ERATE=0.0037;THETA=0.0005;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 104230389 . G GT 345 PASS INDEL;BAVGPOST=0.982;BRSQ=0.266;LDAF=0.0289;AVGPOST=0.9648;RSQ=0.5303;ERATE=0.0014;THETA=0.0003;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 104230391 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.742;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4914;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104230432 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0025;AVGPOST=0.9994;RSQ=0.8910;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104230456 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.5242;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104230483 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0641;AVGPOST=0.9993;RSQ=0.9948;ERATE=0.0004;THETA=0.0002;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 104230508 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0630;AVGPOST=0.9992;RSQ=0.9941;ERATE=0.0004;THETA=0.0003;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 104230542 . CAAG C 335 PASS INDEL;BAVGPOST=0.998;BRSQ=0.782;LDAF=0.0050;AVGPOST=0.9959;RSQ=0.6982;ERATE=0.0005;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104230647 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8771;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104230759 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104230841 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.995;LDAF=0.3228;AVGPOST=0.9952;RSQ=0.9919;ERATE=0.0004;THETA=0.0004;AC=702;AN=2184 GT:DS:GL:BD 0.32142857 0 1 104231276 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7797;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104231314 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8297;ERATE=0.0013;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104231325 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8031;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104231378 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0118;AVGPOST=0.9995;RSQ=0.9844;ERATE=0.0003;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104231383 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.799;LDAF=0.0045;AVGPOST=0.9975;RSQ=0.8015;ERATE=0.0013;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104231415 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9282;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104231478 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9741;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104231569 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0040;AVGPOST=0.9996;RSQ=0.9543;ERATE=0.0003;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104231662 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9055;ERATE=0.0008;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104231742 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.892;LDAF=0.0055;AVGPOST=0.9984;RSQ=0.8919;ERATE=0.0006;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104231804 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.745;LDAF=0.0029;AVGPOST=0.9976;RSQ=0.6741;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104231806 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0026;AVGPOST=0.9967;RSQ=0.5670;ERATE=0.0005;THETA=0.0032;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104231866 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8552;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104232077 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104232151 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9636;ERATE=0.0004;THETA=0.0023;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104232210 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5636;ERATE=0.0004;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104232351 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0024;AVGPOST=0.9977;RSQ=0.6163;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104232377 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8039;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104232437 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0044;AVGPOST=0.9993;RSQ=0.9301;ERATE=0.0004;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104232657 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0038;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104232702 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0615;AVGPOST=0.9994;RSQ=0.9956;ERATE=0.0003;THETA=0.0027;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 104232842 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.877;LDAF=0.0051;AVGPOST=0.9994;RSQ=0.9436;ERATE=0.0003;THETA=0.0035;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104232921 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2091;AVGPOST=0.9989;RSQ=0.9978;ERATE=0.0003;THETA=0.0001;AC=455;AN=2184 GT:DS:GL:BD 0.20833333 0 1 104233009 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104233090 . CTA C 89 PASS INDEL;BAVGPOST=0.994;BRSQ=0.592;LDAF=0.0133;AVGPOST=0.9840;RSQ=0.5160;ERATE=0.0056;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104233119 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.991;LDAF=0.4449;AVGPOST=0.9979;RSQ=0.9960;ERATE=0.0007;THETA=0.0002;AC=973;AN=2184 GT:DS:GL:BD 0.44551283 0 1 104233222 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.737;LDAF=0.0002;AVGPOST=0.9996;RSQ=0.1315;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104233371 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.9252;AVGPOST=0.9992;RSQ=0.9947;ERATE=0.0005;THETA=0.0004;AC=2021;AN=2184 GT:DS:GL:BD 0.92536628 1 1 104233457 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0020;AVGPOST=0.9980;RSQ=0.6067;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104233471 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4459;AVGPOST=0.9983;RSQ=0.9968;ERATE=0.0005;THETA=0.0002;AC=975;AN=2184 GT:DS:GL:BD 0.44642857 0 1 104233503 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.4456;AVGPOST=0.9988;RSQ=0.9977;ERATE=0.0006;THETA=0.0001;AC=975;AN=2184 GT:DS:GL:BD 0.44642857 0 1 104233569 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0033;AVGPOST=0.9987;RSQ=0.8228;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104233752 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5558;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104233899 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.627;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6402;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104233928 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.576;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5489;ERATE=0.0004;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104234032 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6195;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104234237 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2378;AVGPOST=0.9995;RSQ=0.9989;ERATE=0.0003;THETA=0.0002;AC=520;AN=2184 GT:DS:GL:BD 0.23809524 0 1 104234326 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2584;AVGPOST=0.9978;RSQ=0.9953;ERATE=0.0007;THETA=0.0003;AC=563;AN=2184 GT:DS:GL:BD 0.25778389 0 1 104234341 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8919;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104234427 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4989;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104234473 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8835;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104234489 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104234572 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104234602 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7511;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104234788 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.4457;AVGPOST=0.9991;RSQ=0.9983;ERATE=0.0004;THETA=0.0002;AC=975;AN=2184 GT:DS:GL:BD 0.44642857 0 1 104234818 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.9152;AVGPOST=0.9995;RSQ=0.9970;ERATE=0.0003;THETA=0.0001;AC=1999;AN=2184 GT:DS:GL:BD 0.91529304 1 1 104234918 . AT A 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5073;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104235231 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104235298 . G GC 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104235387 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2079;AVGPOST=0.9982;RSQ=0.9956;ERATE=0.0006;THETA=0.0001;AC=455;AN=2184 GT:DS:GL:BD 0.20833333 0 1 104235405 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9251;AVGPOST=0.9991;RSQ=0.9948;ERATE=0.0004;THETA=0.0003;AC=2021;AN=2184 GT:DS:GL:BD 0.92536628 1 1 104235422 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.945;LDAF=0.0178;AVGPOST=0.9973;RSQ=0.9486;ERATE=0.0004;THETA=0.0002;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104235423 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0035;AVGPOST=0.9968;RSQ=0.6365;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104235494 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0050;AVGPOST=0.9996;RSQ=0.9694;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104235581 rs34525895 C CT 21038 PASS INDEL;BAVGPOST=0.994;BRSQ=0.987;LDAF=0.2577;AVGPOST=0.9907;RSQ=0.9823;ERATE=0.0019;THETA=0.0004;AC=560;AN=2184 GT:DS:GL:BD 0.25641027 0 1 104235583 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0044;AVGPOST=0.9979;RSQ=0.8194;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104235607 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0045;AVGPOST=0.9990;RSQ=0.9163;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104235642 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0031;AVGPOST=0.9986;RSQ=0.8061;ERATE=0.0005;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104235655 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.875;LDAF=0.0760;AVGPOST=0.9789;RSQ=0.8996;ERATE=0.0004;THETA=0.0002;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 104235692 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.724;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.6694;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104235820 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7453;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104235910 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0103;AVGPOST=0.9994;RSQ=0.9755;ERATE=0.0003;THETA=0.0002;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104236062 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.4049;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104236222 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5980;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104236304 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.698;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104236358 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5980;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104236390 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0071;AVGPOST=0.9979;RSQ=0.8744;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104236460 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2090;AVGPOST=0.9984;RSQ=0.9963;ERATE=0.0005;THETA=0.0002;AC=456;AN=2184 GT:DS:GL:BD 0.20879121 0 1 104236539 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0025;AVGPOST=0.9987;RSQ=0.8022;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104236556 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5908;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104236601 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.781;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104236642 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.2082;AVGPOST=0.9990;RSQ=0.9977;ERATE=0.0003;THETA=0.0002;AC=455;AN=2184 GT:DS:GL:BD 0.20833333 0 1 104236703 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104236705 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.844;LDAF=0.0049;AVGPOST=0.9993;RSQ=0.9410;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104236957 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.0871;AVGPOST=0.9990;RSQ=0.9941;ERATE=0.0003;THETA=0.0002;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 104236998 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4453;AVGPOST=0.9973;RSQ=0.9954;ERATE=0.0009;THETA=0.0001;AC=975;AN=2184 GT:DS:GL:BD 0.44642857 0 1 104237032 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104237040 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0010;AVGPOST=0.9987;RSQ=0.4177;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104237052 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6334;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104237080 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4454;AVGPOST=0.9982;RSQ=0.9972;ERATE=0.0005;THETA=0.0003;AC=975;AN=2184 GT:DS:GL:BD 0.44642857 0 1 104237128 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0111;AVGPOST=0.9996;RSQ=0.9854;ERATE=0.0003;THETA=0.0002;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104237141 . TG T 73 PASS INDEL;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0025;AVGPOST=0.9988;RSQ=0.7925;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104237208 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.987;LDAF=0.6976;AVGPOST=0.9899;RSQ=0.9810;ERATE=0.0016;THETA=0.0002;AC=1527;AN=2184 GT:DS:GL:BD 0.69917583 1 1 104237244 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0076;AVGPOST=0.9991;RSQ=0.9538;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104237265 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2600;AVGPOST=0.9994;RSQ=0.9986;ERATE=0.0004;THETA=0.0004;AC=567;AN=2184 GT:DS:GL:BD 0.25961539 0 1 104237298 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2080;AVGPOST=0.9990;RSQ=0.9980;ERATE=0.0003;THETA=0.0002;AC=456;AN=2184 GT:DS:GL:BD 0.20879121 0 1 104237330 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4462;AVGPOST=0.9989;RSQ=0.9980;ERATE=0.0004;THETA=0.0002;AC=976;AN=2184 GT:DS:GL:BD 0.44688645 0 1 104237398 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7044;AVGPOST=0.9982;RSQ=0.9967;ERATE=0.0005;THETA=0.0005;AC=1539;AN=2184 GT:DS:GL:BD 0.70467031 1 1 104237437 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.2033;AVGPOST=0.9968;RSQ=0.9927;ERATE=0.0004;THETA=0.0002;AC=444;AN=2184 GT:DS:GL:BD 0.20329671 0 1 104237494 . G GT 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104237497 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104237577 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.620;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7772;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104237611 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2590;AVGPOST=0.9995;RSQ=0.9988;ERATE=0.0003;THETA=0.0003;AC=565;AN=2184 GT:DS:GL:BD 0.25869963 0 1 104237635 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4459;AVGPOST=0.9996;RSQ=0.9993;ERATE=0.0003;THETA=0.0003;AC=976;AN=2184 GT:DS:GL:BD 0.44688645 0 1 104237789 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.2090;AVGPOST=0.9979;RSQ=0.9956;ERATE=0.0003;THETA=0.0005;AC=455;AN=2184 GT:DS:GL:BD 0.20833333 0 1 104237798 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8426;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104237946 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0013;AVGPOST=0.9997;RSQ=0.9066;ERATE=0.0003;THETA=0.0040;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104237948 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7056;ERATE=0.0003;THETA=0.0058;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104238082 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104238209 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0056;AVGPOST=0.9990;RSQ=0.9281;ERATE=0.0006;THETA=0.0122;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104238245 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9141;ERATE=0.0003;THETA=0.0070;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104238284 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6392;ERATE=0.0004;THETA=0.0049;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104238309 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104238314 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0175;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104238397 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.965;LDAF=0.0840;AVGPOST=0.9936;RSQ=0.9755;ERATE=0.0018;THETA=0.0172;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 104238470 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.954;LDAF=0.0176;AVGPOST=0.9982;RSQ=0.9611;ERATE=0.0006;THETA=0.0048;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104238497 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7512;ERATE=0.0003;THETA=0.0036;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104238597 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0090;AVGPOST=0.9991;RSQ=0.9630;ERATE=0.0003;THETA=0.0118;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104238630 . AG A 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0018;AVGPOST=0.9978;RSQ=0.4785;ERATE=0.0003;THETA=0.0138;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104238670 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.690;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6758;ERATE=0.0003;THETA=0.0077;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104238701 . AAT A 130 PASS INDEL;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5263;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104238923 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6968;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104238946 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0088;AVGPOST=0.9991;RSQ=0.9647;ERATE=0.0003;THETA=0.0093;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104238999 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9647;ERATE=0.0003;THETA=0.0161;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104239255 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.724;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.6511;ERATE=0.0003;THETA=0.0061;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104239268 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.706;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0053;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104239382 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6970;ERATE=0.0003;THETA=0.0029;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104239416 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.970;LDAF=0.2456;AVGPOST=0.9894;RSQ=0.9778;ERATE=0.0007;THETA=0.0028;AC=533;AN=2184 GT:DS:GL:BD 0.24404761 0 1 104239436 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.0887;AVGPOST=0.9983;RSQ=0.9938;ERATE=0.0003;THETA=0.0054;AC=195;AN=2184 GT:DS:GL:BD 0.08928572 0 1 104239616 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0018;AVGPOST=0.9995;RSQ=0.8834;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104239662 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0027;AVGPOST=0.9988;RSQ=0.8282;ERATE=0.0005;THETA=0.0077;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104239665 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.569;LDAF=0.0183;AVGPOST=0.9803;RSQ=0.5787;ERATE=0.0074;THETA=0.0029;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104239666 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.976;LDAF=0.6078;AVGPOST=0.9848;RSQ=0.9783;ERATE=0.0009;THETA=0.0085;AC=1331;AN=2184 GT:DS:GL:BD 0.60943222 1 1 104239675 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.9020;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104239687 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0665;AVGPOST=0.9958;RSQ=0.9750;ERATE=0.0007;THETA=0.0005;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 104239803 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.977;LDAF=0.3989;AVGPOST=0.9863;RSQ=0.9819;ERATE=0.0006;THETA=0.0007;AC=873;AN=2184 GT:DS:GL:BD 0.39972529 0 1 104239934 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.981;LDAF=0.6006;AVGPOST=0.9899;RSQ=0.9861;ERATE=0.0008;THETA=0.0004;AC=1313;AN=2184 GT:DS:GL:BD 0.60119045 1 1 104239940 rs11412743 G GA 4911 PASS INDEL;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0273;AVGPOST=0.9973;RSQ=0.9639;ERATE=0.0003;THETA=0.0004;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 104239952 . A AG 436 PASS INDEL;BAVGPOST=0.910;BRSQ=0.332;LDAF=0.0691;AVGPOST=0.9164;RSQ=0.4588;ERATE=0.0018;THETA=0.0007;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 104239954 . A AAAG 189 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104239968 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8316;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104239974 . A AG 95 PASS INDEL;BAVGPOST=0.999;BRSQ=0.901;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.9106;ERATE=0.0003;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104239974 . CA C 558 PASS INDEL;BAVGPOST=0.996;BRSQ=0.736;LDAF=0.0079;AVGPOST=0.9954;RSQ=0.7431;ERATE=0.0010;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104240017 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.859;LDAF=0.0090;AVGPOST=0.9961;RSQ=0.8265;ERATE=0.0023;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104240139 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9643;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104240144 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6920;ERATE=0.0004;THETA=0.0054;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104240204 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104240262 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6941;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104240269 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104240283 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.976;LDAF=0.1781;AVGPOST=0.9917;RSQ=0.9783;ERATE=0.0006;THETA=0.0022;AC=389;AN=2184 GT:DS:GL:BD 0.17811355 0 1 104240326 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104240344 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.707;LDAF=0.0041;AVGPOST=0.9965;RSQ=0.6866;ERATE=0.0016;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104240393 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104240516 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.835;LDAF=0.0019;AVGPOST=0.9992;RSQ=0.8271;ERATE=0.0003;THETA=0.0046;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104240628 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9553;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104240656 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0357;AVGPOST=0.9995;RSQ=0.9941;ERATE=0.0003;THETA=0.0002;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 104240706 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.9137;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104240763 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.913;LDAF=0.0210;AVGPOST=0.9947;RSQ=0.9082;ERATE=0.0003;THETA=0.0003;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 104240858 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104241030 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5875;AVGPOST=0.9978;RSQ=0.9965;ERATE=0.0004;THETA=0.0007;AC=1282;AN=2184 GT:DS:GL:BD 0.58699632 1 1 104241055 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7475;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104241095 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.932;LDAF=0.0031;AVGPOST=0.9989;RSQ=0.8632;ERATE=0.0003;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104241186 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8967;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104241198 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104241237 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9996;RSQ=0.9728;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104241290 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.983;LDAF=0.6061;AVGPOST=0.9837;RSQ=0.9743;ERATE=0.0031;THETA=0.0003;AC=1330;AN=2184 GT:DS:GL:BD 0.60897434 1 1 104241308 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.965;LDAF=0.0168;AVGPOST=0.9986;RSQ=0.9601;ERATE=0.0005;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 104241311 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.992;LDAF=0.4115;AVGPOST=0.9932;RSQ=0.9903;ERATE=0.0005;THETA=0.0008;AC=897;AN=2184 GT:DS:GL:BD 0.41071430 0 1 104241375 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0035;AVGPOST=0.9981;RSQ=0.8414;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104241390 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0265;AVGPOST=0.9997;RSQ=0.9948;ERATE=0.0003;THETA=0.0006;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 104241450 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0028;AVGPOST=0.9984;RSQ=0.7799;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104241518 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104241546 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0070;AVGPOST=0.9987;RSQ=0.9157;ERATE=0.0003;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104241596 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0059;AVGPOST=0.9994;RSQ=0.9541;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104241675 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5868;AVGPOST=0.9985;RSQ=0.9978;ERATE=0.0004;THETA=0.0007;AC=1281;AN=2184 GT:DS:GL:BD 0.58653843 1 1 104241676 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0021;AVGPOST=0.9990;RSQ=0.8046;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104241792 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6033;AVGPOST=0.9979;RSQ=0.9968;ERATE=0.0005;THETA=0.0057;AC=1317;AN=2184 GT:DS:GL:BD 0.60302198 1 1 104241828 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.776;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7055;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104242107 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.810;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8819;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104242125 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0152;AVGPOST=0.9996;RSQ=0.9887;ERATE=0.0004;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 104242352 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0212;AVGPOST=0.9992;RSQ=0.9843;ERATE=0.0004;THETA=0.0022;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 104242703 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7725;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104242753 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0637;AVGPOST=0.9991;RSQ=0.9944;ERATE=0.0003;THETA=0.0004;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 104242798 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.782;LDAF=0.0037;AVGPOST=0.9977;RSQ=0.7832;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104242898 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0141;AVGPOST=0.9991;RSQ=0.9763;ERATE=0.0003;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104242949 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0060;AVGPOST=1.0000;RSQ=0.9963;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104242955 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104242966 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0082;AVGPOST=0.9990;RSQ=0.9517;ERATE=0.0004;THETA=0.0016;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104243068 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2667;AVGPOST=0.9984;RSQ=0.9973;ERATE=0.0003;THETA=0.0003;AC=582;AN=2184 GT:DS:GL:BD 0.26648352 0 1 104243764 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.746;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104243780 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104244201 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0138;AVGPOST=0.9999;RSQ=0.9970;ERATE=0.0003;THETA=0.0008;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104244267 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0389;AVGPOST=0.9994;RSQ=0.9926;ERATE=0.0003;THETA=0.0020;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 104244318 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2661;AVGPOST=0.9984;RSQ=0.9976;ERATE=0.0003;THETA=0.0003;AC=581;AN=2184 GT:DS:GL:BD 0.26602563 0 1 104244424 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6781;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104244534 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4989;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104244628 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0031;AVGPOST=0.9990;RSQ=0.8871;ERATE=0.0003;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104244870 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.946;LDAF=0.0205;AVGPOST=0.9961;RSQ=0.9282;ERATE=0.0014;THETA=0.0003;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 104244898 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0052;AVGPOST=0.9997;RSQ=0.9708;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104245085 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8483;ERATE=0.0003;THETA=0.0037;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104245111 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0076;AVGPOST=0.9986;RSQ=0.9192;ERATE=0.0004;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104245232 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2731;AVGPOST=0.9909;RSQ=0.9841;ERATE=0.0008;THETA=0.0006;AC=592;AN=2184 GT:DS:GL:BD 0.27106228 0 1 104245300 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0404;AVGPOST=0.9978;RSQ=0.9768;ERATE=0.0005;THETA=0.0009;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 104245407 . C CA 209 PASS INDEL;BAVGPOST=0.996;BRSQ=0.412;LDAF=0.0130;AVGPOST=0.9839;RSQ=0.4942;ERATE=0.0010;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104245629 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.793;BRSQ=0.175;LDAF=0.8054;AVGPOST=0.7417;RSQ=0.3222;ERATE=0.0304;THETA=0.0005;AC=1925;AN=2184 GT:DS:GL:BD 0.88141024 1 1 104245897 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.862;LDAF=0.0110;AVGPOST=0.9920;RSQ=0.7228;ERATE=0.0005;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104245966 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.945;LDAF=0.3283;AVGPOST=0.9723;RSQ=0.9554;ERATE=0.0019;THETA=0.0003;AC=711;AN=2184 GT:DS:GL:BD 0.32554945 0 1 104246101 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.965;LDAF=0.2717;AVGPOST=0.9934;RSQ=0.9879;ERATE=0.0009;THETA=0.0032;AC=594;AN=2184 GT:DS:GL:BD 0.27197802 0 1 104246189 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0088;AVGPOST=0.9857;RSQ=0.3538;ERATE=0.0014;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104246193 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.6769;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104246294 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.495;LDAF=0.0051;AVGPOST=0.9969;RSQ=0.7777;ERATE=0.0004;THETA=0.0012;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104246433 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0067;AVGPOST=0.9994;RSQ=0.9562;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104246691 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0072;AVGPOST=0.9995;RSQ=0.9705;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104246836 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1609;AVGPOST=0.9993;RSQ=0.9977;ERATE=0.0003;THETA=0.0003;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 104246923 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6180;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104246983 . TAG T 61 PASS INDEL;BAVGPOST=0.999;BRSQ=0.755;LDAF=0.0026;AVGPOST=0.9973;RSQ=0.5935;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104247204 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104247479 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.917;LDAF=0.0051;AVGPOST=0.9991;RSQ=0.9329;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104247482 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104247536 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5864;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104247540 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9799;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104247559 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9863;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104247573 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104247629 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104247879 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104248371 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.720;LDAF=0.0017;AVGPOST=0.9981;RSQ=0.5233;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104248393 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0031;AVGPOST=0.9979;RSQ=0.7464;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104248613 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.776;LDAF=0.0032;AVGPOST=0.9972;RSQ=0.6237;ERATE=0.0004;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104248711 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.863;LDAF=0.0074;AVGPOST=0.9949;RSQ=0.7629;ERATE=0.0005;THETA=0.0010;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104248723 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0025;AVGPOST=0.9992;RSQ=0.8734;ERATE=0.0005;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104248813 . AC A 126 PASS INDEL;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104248845 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104248905 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104249171 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104249183 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5157;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104249368 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0185;AVGPOST=0.9995;RSQ=0.9902;ERATE=0.0003;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 104249377 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8010;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104249439 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.830;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9072;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104249482 . G GA 74 PASS INDEL;BAVGPOST=0.999;BRSQ=0.755;LDAF=0.0029;AVGPOST=0.9974;RSQ=0.6165;ERATE=0.0008;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104249587 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.5316;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104249915 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0279;AVGPOST=1.0000;RSQ=0.9992;ERATE=0.0003;THETA=0.0009;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 104249945 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0018;AVGPOST=0.9998;RSQ=0.9536;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104249990 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0092;AVGPOST=0.9998;RSQ=0.9893;ERATE=0.0003;THETA=0.0009;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104250060 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0120;AVGPOST=0.9998;RSQ=0.9933;ERATE=0.0003;THETA=0.0011;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104250076 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1190;AVGPOST=0.9995;RSQ=0.9977;ERATE=0.0003;THETA=0.0009;AC=259;AN=2184 GT:DS:GL:BD 0.11858974 0 1 104250436 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0021;AVGPOST=0.9988;RSQ=0.7792;ERATE=0.0007;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104250443 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0030;AVGPOST=0.9986;RSQ=0.8499;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104250644 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0022;AVGPOST=0.9986;RSQ=0.7646;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104250684 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104250799 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104250839 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0184;AVGPOST=0.9998;RSQ=0.9945;ERATE=0.0003;THETA=0.0009;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 104250859 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7682;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104250917 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0957;AVGPOST=0.9996;RSQ=0.9981;ERATE=0.0003;THETA=0.0009;AC=208;AN=2184 GT:DS:GL:BD 0.09523810 0 1 104251042 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104251076 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7673;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104251084 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6872;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104251125 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8756;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104251174 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0229;AVGPOST=0.9997;RSQ=0.9945;ERATE=0.0003;THETA=0.0008;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 104251226 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6265;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104251322 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6589;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104251400 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0184;AVGPOST=0.9997;RSQ=0.9936;ERATE=0.0003;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 104251410 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0287;AVGPOST=0.9985;RSQ=0.9764;ERATE=0.0003;THETA=0.0009;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 104251471 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2614;AVGPOST=0.9990;RSQ=0.9981;ERATE=0.0003;THETA=0.0006;AC=571;AN=2184 GT:DS:GL:BD 0.26144689 0 1 104251492 . AG A 54 PASS INDEL;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5806;ERATE=0.0006;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104251673 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0391;AVGPOST=0.9982;RSQ=0.9850;ERATE=0.0003;THETA=0.0005;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 104251680 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0122;AVGPOST=0.9994;RSQ=0.9785;ERATE=0.0004;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104251791 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0280;AVGPOST=0.9997;RSQ=0.9960;ERATE=0.0003;THETA=0.0008;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 104251808 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4485;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104251964 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5396;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104252030 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9282;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104252042 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0195;AVGPOST=0.9994;RSQ=0.9863;ERATE=0.0003;THETA=0.0005;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 104252076 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2152;AVGPOST=0.9996;RSQ=0.9990;ERATE=0.0003;THETA=0.0008;AC=470;AN=2184 GT:DS:GL:BD 0.21520147 0 1 104252275 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0033;AVGPOST=0.9992;RSQ=0.8847;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104252314 . T TA 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6283;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104252476 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104252614 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.914;LDAF=0.0140;AVGPOST=0.9954;RSQ=0.8669;ERATE=0.0010;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104252677 . CT C 526 PASS INDEL;BAVGPOST=0.999;BRSQ=0.871;LDAF=0.0045;AVGPOST=0.9965;RSQ=0.6792;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104252678 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2157;AVGPOST=0.9984;RSQ=0.9962;ERATE=0.0003;THETA=0.0005;AC=470;AN=2184 GT:DS:GL:BD 0.21520147 0 1 104252696 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0074;AVGPOST=0.9972;RSQ=0.8761;ERATE=0.0004;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104252745 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.7062;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104252746 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0041;AVGPOST=0.9972;RSQ=0.7540;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104252802 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0038;AVGPOST=0.9992;RSQ=0.9102;ERATE=0.0003;THETA=0.0021;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104252841 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0121;AVGPOST=0.9994;RSQ=0.9779;ERATE=0.0003;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104252857 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7530;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104252892 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.813;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8277;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104252914 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104253106 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104253306 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0062;AVGPOST=0.9995;RSQ=0.9636;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104253336 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104253357 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0381;AVGPOST=0.9990;RSQ=0.9886;ERATE=0.0004;THETA=0.0005;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 104253753 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104253800 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104253801 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0027;AVGPOST=0.9976;RSQ=0.6629;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104253942 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0604;AVGPOST=0.9979;RSQ=0.9875;ERATE=0.0005;THETA=0.0005;AC=131;AN=2184 GT:DS:GL:BD 0.05998169 0 1 104254000 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.848;LDAF=0.0055;AVGPOST=0.9990;RSQ=0.9160;ERATE=0.0005;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104254025 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0092;AVGPOST=0.9999;RSQ=0.9952;ERATE=0.0003;THETA=0.0011;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104254089 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=0.9988;RSQ=0.7348;ERATE=0.0003;THETA=0.0031;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104254122 . AC A 2263 PASS INDEL;BAVGPOST=0.998;BRSQ=0.945;LDAF=0.0160;AVGPOST=0.9995;RSQ=0.9858;ERATE=0.0003;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 104254132 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1436;AVGPOST=0.9994;RSQ=0.9977;ERATE=0.0003;THETA=0.0007;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 104254160 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0040;AVGPOST=0.9992;RSQ=0.9137;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104254443 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.698;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7234;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104254559 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.733;LDAF=0.0055;AVGPOST=0.9981;RSQ=0.8897;ERATE=0.0003;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104254562 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0123;AVGPOST=0.9998;RSQ=0.9933;ERATE=0.0003;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104254566 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4333;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104254665 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5571;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104254670 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8348;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104254722 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0117;AVGPOST=0.9973;RSQ=0.9050;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104254866 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2428;AVGPOST=0.9985;RSQ=0.9966;ERATE=0.0004;THETA=0.0003;AC=530;AN=2184 GT:DS:GL:BD 0.24267399 0 1 104254975 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0167;AVGPOST=0.9984;RSQ=0.9675;ERATE=0.0004;THETA=0.0006;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 104254978 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0042;AVGPOST=0.9969;RSQ=0.6953;ERATE=0.0021;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104255043 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9874;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104255086 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.814;LDAF=0.0039;AVGPOST=0.9979;RSQ=0.7911;ERATE=0.0009;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104255169 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6343;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104255408 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.641;LDAF=0.0165;AVGPOST=0.9874;RSQ=0.7045;ERATE=0.0063;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104255424 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7676;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104255702 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5467;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104255909 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104255912 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5951;ERATE=0.0004;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104255943 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1442;AVGPOST=0.9971;RSQ=0.9913;ERATE=0.0004;THETA=0.0007;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 104256006 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.598;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.4909;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104256086 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.3958;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104256280 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6319;ERATE=0.0005;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104256702 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.6917;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104256767 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0060;AVGPOST=1.0000;RSQ=0.9963;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104256894 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6666;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104256912 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0129;AVGPOST=0.9989;RSQ=0.9652;ERATE=0.0003;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104256981 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5935;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104256982 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.756;LDAF=0.0038;AVGPOST=0.9987;RSQ=0.8323;ERATE=0.0005;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104257022 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0026;AVGPOST=0.9990;RSQ=0.8466;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104257070 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104257080 . CT C 94 PASS INDEL;BAVGPOST=0.998;BRSQ=0.650;LDAF=0.0028;AVGPOST=0.9971;RSQ=0.5565;ERATE=0.0014;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104257119 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9058;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104257129 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6031;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104257222 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.6284;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104257341 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.640;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5252;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104257417 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0120;AVGPOST=0.9998;RSQ=0.9914;ERATE=0.0003;THETA=0.0008;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104257525 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104257539 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7600;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104257559 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5084;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104257607 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9993;RSQ=0.8494;ERATE=0.0007;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104257640 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8117;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104257732 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1431;AVGPOST=0.9995;RSQ=0.9980;ERATE=0.0004;THETA=0.0004;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 104257738 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7867;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104257810 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9244;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104257857 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7434;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104257932 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3980;AVGPOST=0.9954;RSQ=0.9930;ERATE=0.0008;THETA=0.0003;AC=869;AN=2184 GT:DS:GL:BD 0.39789379 0 1 104258036 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0038;AVGPOST=0.9989;RSQ=0.8959;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104258085 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0050;AVGPOST=0.9970;RSQ=0.7889;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104258240 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.4482;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104258399 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.503;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5407;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104258505 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6079;ERATE=0.0007;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104258509 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1573;AVGPOST=0.9940;RSQ=0.9825;ERATE=0.0010;THETA=0.0010;AC=342;AN=2184 GT:DS:GL:BD 0.15659341 0 1 104258550 . G GT 7 PASS INDEL;BAVGPOST=0.999;BRSQ=0.834;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5039;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104258601 . T TA 21 PASS INDEL;BAVGPOST=0.999;BRSQ=0.812;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5400;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104258603 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0164;AVGPOST=0.9983;RSQ=0.9632;ERATE=0.0003;THETA=0.0007;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 104258609 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104258610 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6295;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104258768 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6434;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104258777 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4695;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104258819 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0036;AVGPOST=0.9978;RSQ=0.7610;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104258828 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0138;AVGPOST=0.9998;RSQ=0.9926;ERATE=0.0003;THETA=0.0002;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104258847 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.852;LDAF=0.0103;AVGPOST=0.9964;RSQ=0.8478;ERATE=0.0006;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104258871 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9996;RSQ=0.9483;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104258908 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6215;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104259195 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.997;LDAF=0.4123;AVGPOST=0.9968;RSQ=0.9962;ERATE=0.0003;THETA=0.0017;AC=901;AN=2184 GT:DS:GL:BD 0.41254580 0 1 104259377 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8386;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104259503 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0095;AVGPOST=0.9974;RSQ=0.8794;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104259569 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8316;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104259887 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104259915 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0118;AVGPOST=0.9992;RSQ=0.9747;ERATE=0.0004;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104259920 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7937;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104259990 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104260055 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.787;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6441;ERATE=0.0006;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104260183 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.749;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5595;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104260190 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9268;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104260316 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.754;LDAF=0.0006;AVGPOST=0.9992;RSQ=0.4419;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104260538 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104260571 . T TA 224 PASS INDEL;BAVGPOST=0.998;BRSQ=0.805;LDAF=0.0055;AVGPOST=0.9964;RSQ=0.7447;ERATE=0.0009;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104260619 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8528;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104261002 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104261100 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8739;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104261492 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5064;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104261550 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6431;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104261688 . A AC 79 PASS INDEL;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0021;AVGPOST=0.9990;RSQ=0.7788;ERATE=0.0007;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104261766 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8685;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104261804 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104261933 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0041;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104262067 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104262130 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0019;AVGPOST=0.9978;RSQ=0.5520;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104262131 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0057;AVGPOST=0.9980;RSQ=0.8630;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104262143 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0210;AVGPOST=0.9987;RSQ=0.9749;ERATE=0.0004;THETA=0.0007;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 104262325 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.641;LDAF=0.0028;AVGPOST=0.9984;RSQ=0.7859;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104262369 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.793;LDAF=0.0064;AVGPOST=0.9954;RSQ=0.7489;ERATE=0.0005;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104262370 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0020;AVGPOST=0.9978;RSQ=0.6192;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104262457 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104262470 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104262480 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5675;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104262635 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8756;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104262735 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8344;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104262762 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104262945 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9358;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104262972 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0036;AVGPOST=0.9992;RSQ=0.9174;ERATE=0.0003;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104262974 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5763;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104262992 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6357;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104263094 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0087;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104263120 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9267;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104263154 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0040;AVGPOST=0.9981;RSQ=0.8569;ERATE=0.0008;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104263242 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7350;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104263243 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0168;AVGPOST=0.9981;RSQ=0.9593;ERATE=0.0004;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 104263244 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0170;AVGPOST=0.9976;RSQ=0.9427;ERATE=0.0005;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 104263246 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0167;AVGPOST=0.9982;RSQ=0.9608;ERATE=0.0004;THETA=0.0008;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 104263250 . A AAG 20 PASS INDEL;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5663;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104263651 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104263659 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0013;AVGPOST=1.0000;RSQ=0.9839;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104263764 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104263877 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9780;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104263941 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0088;AVGPOST=0.9998;RSQ=0.9900;ERATE=0.0003;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104264072 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0199;AVGPOST=0.9995;RSQ=0.9868;ERATE=0.0003;THETA=0.0004;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 104264112 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104264140 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7882;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104264188 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.937;LDAF=0.0204;AVGPOST=0.9948;RSQ=0.9088;ERATE=0.0003;THETA=0.0021;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 104264457 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.751;LDAF=0.0068;AVGPOST=0.9970;RSQ=0.8443;ERATE=0.0004;THETA=0.0030;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104264468 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.659;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5387;ERATE=0.0003;THETA=0.0136;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104264476 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104264572 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0049;AVGPOST=0.9973;RSQ=0.7802;ERATE=0.0011;THETA=0.0014;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104264606 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8156;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104264613 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7109;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104264939 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.991;LDAF=0.3631;AVGPOST=0.9946;RSQ=0.9912;ERATE=0.0005;THETA=0.0005;AC=794;AN=2184 GT:DS:GL:BD 0.36355311 0 1 104265065 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0042;AVGPOST=0.9987;RSQ=0.8866;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104265085 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6075;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104265135 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7787;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104265174 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104265175 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4425;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104265240 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6671;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104265271 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0037;AVGPOST=0.9995;RSQ=0.9353;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104265307 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0051;AVGPOST=0.9986;RSQ=0.8787;ERATE=0.0009;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104265311 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6021;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104265408 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.863;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9244;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104265567 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.6355;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104265589 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.3583;AVGPOST=0.9965;RSQ=0.9934;ERATE=0.0004;THETA=0.0006;AC=781;AN=2184 GT:DS:GL:BD 0.35760072 0 1 104265619 . G GA 97 PASS INDEL;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0042;AVGPOST=0.9960;RSQ=0.6448;ERATE=0.0004;THETA=0.0013;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104265620 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6872;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104265668 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0129;AVGPOST=0.9986;RSQ=0.9599;ERATE=0.0005;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104265798 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.981;LDAF=0.1641;AVGPOST=0.9895;RSQ=0.9719;ERATE=0.0003;THETA=0.0005;AC=355;AN=2184 GT:DS:GL:BD 0.16254579 0 1 104265912 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0075;AVGPOST=0.9996;RSQ=0.9774;ERATE=0.0003;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104266072 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0174;AVGPOST=0.9999;RSQ=0.9963;ERATE=0.0003;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 104266083 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104266114 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0104;AVGPOST=0.9993;RSQ=0.9684;ERATE=0.0003;THETA=0.0022;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104266116 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0104;AVGPOST=0.9993;RSQ=0.9685;ERATE=0.0004;THETA=0.0014;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104266227 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.8918;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104266231 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0024;AVGPOST=0.9986;RSQ=0.8104;ERATE=0.0003;THETA=0.0037;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104266242 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0020;AVGPOST=0.9989;RSQ=0.7782;ERATE=0.0011;THETA=0.0021;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104266274 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0244;AVGPOST=0.9995;RSQ=0.9901;ERATE=0.0003;THETA=0.0004;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 104266275 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0008;AVGPOST=0.9989;RSQ=0.4577;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104266319 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0174;AVGPOST=0.9996;RSQ=0.9891;ERATE=0.0003;THETA=0.0006;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 104266552 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104266674 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104266718 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.725;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6775;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104266746 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0018;AVGPOST=0.9993;RSQ=0.8469;ERATE=0.0003;THETA=0.0020;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104266759 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.979;LDAF=0.4157;AVGPOST=0.9873;RSQ=0.9797;ERATE=0.0007;THETA=0.0044;AC=907;AN=2184 GT:DS:GL:BD 0.41529304 0 1 104266934 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0148;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104267067 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0003;THETA=0.0169;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104267095 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.559;LDAF=0.0029;AVGPOST=0.9957;RSQ=0.3836;ERATE=0.0011;THETA=0.0101;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104267315 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.940;LDAF=0.0159;AVGPOST=0.9958;RSQ=0.8986;ERATE=0.0003;THETA=0.0081;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 104267336 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.951;LDAF=0.2288;AVGPOST=0.9745;RSQ=0.9462;ERATE=0.0032;THETA=0.0219;AC=493;AN=2184 GT:DS:GL:BD 0.22573259 0 1 104267564 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0012;AVGPOST=0.9979;RSQ=0.3352;ERATE=0.0003;THETA=0.0073;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104267674 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0053;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104267899 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0152;AVGPOST=0.9993;RSQ=0.9837;ERATE=0.0003;THETA=0.0080;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 104268018 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.8957;ERATE=0.0003;THETA=0.0020;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104268035 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0106;AVGPOST=0.9994;RSQ=0.9812;ERATE=0.0004;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104268045 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.6092;AVGPOST=0.9941;RSQ=0.9901;ERATE=0.0007;THETA=0.0008;AC=1332;AN=2184 GT:DS:GL:BD 0.60989010 1 1 104268116 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104268281 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0234;AVGPOST=0.9984;RSQ=0.9713;ERATE=0.0003;THETA=0.0004;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 104268292 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.963;LDAF=0.0155;AVGPOST=0.9987;RSQ=0.9607;ERATE=0.0003;THETA=0.0005;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 104268347 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.973;LDAF=0.0221;AVGPOST=0.9988;RSQ=0.9761;ERATE=0.0003;THETA=0.0008;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 104268384 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7074;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104268411 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104268461 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8328;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104268496 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104268505 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104268506 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9562;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104268657 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104268664 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.950;LDAF=0.5515;AVGPOST=0.9628;RSQ=0.9477;ERATE=0.0077;THETA=0.0008;AC=1212;AN=2184 GT:DS:GL:BD 0.55494505 1 1 104268668 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.951;LDAF=0.5737;AVGPOST=0.9624;RSQ=0.9469;ERATE=0.0075;THETA=0.0016;AC=1264;AN=2184 GT:DS:GL:BD 0.57875460 1 1 104268669 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7000;ERATE=0.0003;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104268700 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5958;AVGPOST=0.9976;RSQ=0.9960;ERATE=0.0004;THETA=0.0006;AC=1300;AN=2184 GT:DS:GL:BD 0.59523809 1 1 104268715 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0548;AVGPOST=0.9996;RSQ=0.9967;ERATE=0.0003;THETA=0.0007;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 104268767 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8138;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104268821 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.980;LDAF=0.6034;AVGPOST=0.9817;RSQ=0.9713;ERATE=0.0033;THETA=0.0005;AC=1315;AN=2184 GT:DS:GL:BD 0.60210621 1 1 104268931 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.536;LDAF=0.0112;AVGPOST=0.9872;RSQ=0.5711;ERATE=0.0009;THETA=0.0018;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104268972 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.964;LDAF=0.0550;AVGPOST=0.9992;RSQ=0.9932;ERATE=0.0004;THETA=0.0004;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 104268991 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.980;LDAF=0.0457;AVGPOST=0.9967;RSQ=0.9701;ERATE=0.0003;THETA=0.0005;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 104269004 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.921;LDAF=0.0130;AVGPOST=0.9975;RSQ=0.9321;ERATE=0.0004;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104269016 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.648;LDAF=0.0060;AVGPOST=0.9937;RSQ=0.5736;ERATE=0.0024;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104269029 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.599;LDAF=0.0021;AVGPOST=0.9976;RSQ=0.5449;ERATE=0.0007;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104269192 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.940;BRSQ=0.874;LDAF=0.6977;AVGPOST=0.9513;RSQ=0.9147;ERATE=0.0036;THETA=0.0007;AC=1550;AN=2184 GT:DS:GL:BD 0.70970696 1 1 104269261 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.702;LDAF=0.0022;AVGPOST=0.9968;RSQ=0.4222;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104269264 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7835;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104269301 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.978;LDAF=0.0372;AVGPOST=0.9972;RSQ=0.9738;ERATE=0.0003;THETA=0.0002;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 104269453 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.723;LDAF=0.0034;AVGPOST=0.9988;RSQ=0.8490;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104269458 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.974;LDAF=0.4785;AVGPOST=0.9882;RSQ=0.9830;ERATE=0.0005;THETA=0.0004;AC=1050;AN=2184 GT:DS:GL:BD 0.48076922 0 1 104269476 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.0943;AVGPOST=0.9948;RSQ=0.9821;ERATE=0.0003;THETA=0.0006;AC=206;AN=2184 GT:DS:GL:BD 0.09432235 0 1 104269524 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.972;LDAF=0.0418;AVGPOST=0.9952;RSQ=0.9572;ERATE=0.0006;THETA=0.0005;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 104269528 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104269582 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8667;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104269604 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.787;LDAF=0.0268;AVGPOST=0.9925;RSQ=0.8917;ERATE=0.0007;THETA=0.0008;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 104269670 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.854;LDAF=0.1258;AVGPOST=0.9661;RSQ=0.8808;ERATE=0.0089;THETA=0.0004;AC=267;AN=2184 GT:DS:GL:BD 0.12225275 0 1 104269675 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.884;LDAF=0.0091;AVGPOST=0.9972;RSQ=0.8657;ERATE=0.0004;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104269704 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0082;AVGPOST=0.9963;RSQ=0.8309;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104269710 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0007;AVGPOST=0.9986;RSQ=0.1488;ERATE=0.0004;THETA=0.0010;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104269737 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104269767 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0042;AVGPOST=0.9997;RSQ=0.9688;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104269768 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6550;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104269774 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5719;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104269786 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.863;LDAF=0.1238;AVGPOST=0.9712;RSQ=0.9058;ERATE=0.0040;THETA=0.0046;AC=265;AN=2184 GT:DS:GL:BD 0.12133700 0 1 104269808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.963;LDAF=0.1104;AVGPOST=0.9967;RSQ=0.9869;ERATE=0.0004;THETA=0.0005;AC=243;AN=2184 GT:DS:GL:BD 0.11126374 0 1 104269894 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.961;LDAF=0.2248;AVGPOST=0.9905;RSQ=0.9837;ERATE=0.0005;THETA=0.0004;AC=498;AN=2184 GT:DS:GL:BD 0.22802198 0 1 104269961 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0774;AVGPOST=0.9963;RSQ=0.9775;ERATE=0.0005;THETA=0.0006;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 104270115 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.890;BRSQ=0.812;LDAF=0.4340;AVGPOST=0.9215;RSQ=0.8906;ERATE=0.0055;THETA=0.0006;AC=981;AN=2184 GT:DS:GL:BD 0.44917583 0 1 104270146 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0325;AVGPOST=0.9814;RSQ=0.7928;ERATE=0.0008;THETA=0.0003;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 104270174 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.912;LDAF=0.8167;AVGPOST=0.9225;RSQ=0.8195;ERATE=0.0042;THETA=0.0004;AC=1818;AN=2184 GT:DS:GL:BD 0.83241761 1 1 104270261 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.652;LDAF=0.0104;AVGPOST=0.9926;RSQ=0.7504;ERATE=0.0004;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104270495 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.632;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6096;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104270543 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0040;AVGPOST=0.9970;RSQ=0.7007;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104270595 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.675;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6386;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104270623 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.857;LDAF=0.0360;AVGPOST=0.9932;RSQ=0.9430;ERATE=0.0002;THETA=0.0006;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 104270690 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.817;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9181;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104270691 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.894;LDAF=0.1449;AVGPOST=0.9839;RSQ=0.9557;ERATE=0.0005;THETA=0.0007;AC=323;AN=2184 GT:DS:GL:BD 0.14789377 0 1 104270692 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0055;AVGPOST=0.9979;RSQ=0.8310;ERATE=0.0002;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104270701 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0028;AVGPOST=0.9968;RSQ=0.4894;ERATE=0.0008;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104270725 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.812;LDAF=0.0050;AVGPOST=0.9977;RSQ=0.7964;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104270799 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.978;LDAF=0.1124;AVGPOST=0.9962;RSQ=0.9852;ERATE=0.0003;THETA=0.0029;AC=248;AN=2184 GT:DS:GL:BD 0.11355311 0 1 104270868 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.979;LDAF=0.1124;AVGPOST=0.9965;RSQ=0.9866;ERATE=0.0004;THETA=0.0032;AC=248;AN=2184 GT:DS:GL:BD 0.11355311 0 1 104270897 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.785;LDAF=0.0048;AVGPOST=0.9984;RSQ=0.8515;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104270927 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0041;AVGPOST=0.9993;RSQ=0.9316;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104271076 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104271084 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104271179 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.983;LDAF=0.2349;AVGPOST=0.9961;RSQ=0.9921;ERATE=0.0003;THETA=0.0013;AC=514;AN=2184 GT:DS:GL:BD 0.23534799 0 1 104271210 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.958;BRSQ=0.892;LDAF=0.1824;AVGPOST=0.9633;RSQ=0.9215;ERATE=0.0004;THETA=0.0003;AC=405;AN=2184 GT:DS:GL:BD 0.18543956 0 1 104271272 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.958;BRSQ=0.892;LDAF=0.1834;AVGPOST=0.9627;RSQ=0.9219;ERATE=0.0005;THETA=0.0003;AC=406;AN=2184 GT:DS:GL:BD 0.18589744 0 1 104271278 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0133;AVGPOST=0.9991;RSQ=0.9747;ERATE=0.0003;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104271291 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.724;LDAF=0.0081;AVGPOST=0.9970;RSQ=0.8513;ERATE=0.0004;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104271372 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5030;ERATE=0.0004;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104271471 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.975;LDAF=0.1133;AVGPOST=0.9992;RSQ=0.9963;ERATE=0.0003;THETA=0.0008;AC=248;AN=2184 GT:DS:GL:BD 0.11355311 0 1 104271525 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.796;LDAF=0.0063;AVGPOST=0.9978;RSQ=0.8455;ERATE=0.0003;THETA=0.0021;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104271595 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1138;AVGPOST=0.9991;RSQ=0.9962;ERATE=0.0004;THETA=0.0006;AC=249;AN=2184 GT:DS:GL:BD 0.11401099 0 1 104271645 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104271652 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0852;AVGPOST=0.9963;RSQ=0.9845;ERATE=0.0007;THETA=0.0013;AC=186;AN=2184 GT:DS:GL:BD 0.08516484 0 1 104271677 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0043;AVGPOST=0.9946;RSQ=0.5038;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104271796 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.3490;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104271825 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.973;LDAF=0.1130;AVGPOST=0.9960;RSQ=0.9848;ERATE=0.0004;THETA=0.0003;AC=248;AN=2184 GT:DS:GL:BD 0.11355311 0 1 104271881 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8728;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104271958 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0027;AVGPOST=0.9971;RSQ=0.5554;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104271988 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6838;ERATE=0.0002;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104272103 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2106;AVGPOST=0.9986;RSQ=0.9973;ERATE=0.0002;THETA=0.0003;AC=461;AN=2184 GT:DS:GL:BD 0.21108058 0 1 104272143 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.1119;AVGPOST=0.9979;RSQ=0.9930;ERATE=0.0003;THETA=0.0006;AC=245;AN=2184 GT:DS:GL:BD 0.11217949 0 1 104272185 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2324;AVGPOST=0.9968;RSQ=0.9949;ERATE=0.0003;THETA=0.0004;AC=508;AN=2184 GT:DS:GL:BD 0.23260073 0 1 104272191 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104272206 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1134;AVGPOST=0.9996;RSQ=0.9984;ERATE=0.0003;THETA=0.0011;AC=248;AN=2184 GT:DS:GL:BD 0.11355311 0 1 104272302 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.957;LDAF=0.0199;AVGPOST=0.9976;RSQ=0.9519;ERATE=0.0002;THETA=0.0005;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 104272325 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0205;AVGPOST=0.9994;RSQ=0.9882;ERATE=0.0002;THETA=0.0004;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 104272347 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1136;AVGPOST=0.9992;RSQ=0.9968;ERATE=0.0003;THETA=0.0008;AC=248;AN=2184 GT:DS:GL:BD 0.11355311 0 1 104272368 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1138;AVGPOST=0.9989;RSQ=0.9956;ERATE=0.0003;THETA=0.0004;AC=248;AN=2184 GT:DS:GL:BD 0.11355311 0 1 104272559 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0009;AVGPOST=0.9986;RSQ=0.3914;ERATE=0.0003;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104272709 . GA G 273 PASS INDEL;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8879;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104272719 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0063;AVGPOST=0.9978;RSQ=0.8543;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104272792 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104272931 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6830;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104273044 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0767;AVGPOST=0.9988;RSQ=0.9925;ERATE=0.0003;THETA=0.0002;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 104273062 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5993;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104273098 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6464;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104273322 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2118;AVGPOST=0.9960;RSQ=0.9925;ERATE=0.0005;THETA=0.0004;AC=463;AN=2184 GT:DS:GL:BD 0.21199633 0 1 104273349 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6561;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104273400 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7577;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104273464 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.725;LDAF=0.0025;AVGPOST=0.9976;RSQ=0.7105;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104273470 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0849;AVGPOST=0.9991;RSQ=0.9962;ERATE=0.0003;THETA=0.0006;AC=185;AN=2184 GT:DS:GL:BD 0.08470696 0 1 104273484 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7297;ERATE=0.0002;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104273492 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9654;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104273544 . CA C 46 PASS INDEL;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104273565 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6244;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104273575 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104273626 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1134;AVGPOST=0.9996;RSQ=0.9984;ERATE=0.0003;THETA=0.0004;AC=248;AN=2184 GT:DS:GL:BD 0.11355311 0 1 104273668 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0166;AVGPOST=0.9991;RSQ=0.9749;ERATE=0.0003;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 104273718 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1122;AVGPOST=0.9990;RSQ=0.9958;ERATE=0.0004;THETA=0.0003;AC=246;AN=2184 GT:DS:GL:BD 0.11263736 0 1 104273853 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8282;AVGPOST=0.9984;RSQ=0.9954;ERATE=0.0004;THETA=0.0003;AC=1810;AN=2184 GT:DS:GL:BD 0.82875460 1 1 104273887 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104273987 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7282;ERATE=0.0004;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104274023 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5808;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104274260 . A ACTCTCTTTCTCCCTTC 17400 PASS INDEL;BAVGPOST=0.988;BRSQ=0.952;LDAF=0.1232;AVGPOST=0.9911;RSQ=0.9664;ERATE=0.0006;THETA=0.0003;AC=268;AN=2184 GT:DS:GL:BD 0.12271062 0 1 104274516 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0036;AVGPOST=1.0000;RSQ=0.9940;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104274673 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104274944 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104274967 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104274972 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104274975 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104274976 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=1.0000;RSQ=0.9941;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104274980 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.7289;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104275001 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104275002 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8689;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104275017 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0174;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 104275044 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104275414 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104275451 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104275658 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7842;ERATE=0.0011;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104275673 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0075;AVGPOST=0.9993;RSQ=0.9601;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104275687 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.990;LDAF=0.3155;AVGPOST=0.9955;RSQ=0.9917;ERATE=0.0006;THETA=0.0005;AC=689;AN=2184 GT:DS:GL:BD 0.31547618 0 1 104275793 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5910;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104275923 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.3871;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104276066 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0077;AVGPOST=0.9992;RSQ=0.9645;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104276091 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0019;AVGPOST=0.9993;RSQ=0.8447;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104276326 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0325;AVGPOST=0.9996;RSQ=0.9947;ERATE=0.0003;THETA=0.0018;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 104276351 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5705;AVGPOST=0.9973;RSQ=0.9955;ERATE=0.0003;THETA=0.0002;AC=1246;AN=2184 GT:DS:GL:BD 0.57051283 1 1 104276358 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104276371 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104276460 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104276639 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104276660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104276932 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0124;AVGPOST=0.9989;RSQ=0.9726;ERATE=0.0004;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104277028 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104277044 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9090;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104277128 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104277146 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104277229 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8673;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104277256 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104277309 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104277319 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0095;AVGPOST=0.9998;RSQ=0.9923;ERATE=0.0003;THETA=0.0022;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104277337 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0883;AVGPOST=0.9997;RSQ=0.9987;ERATE=0.0003;THETA=0.0005;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 104277345 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104277575 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=1.0000;RSQ=0.9970;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104277581 . A AG 21 PASS INDEL;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0023;AVGPOST=0.9984;RSQ=0.7308;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104277637 . CTG C 109 PASS INDEL;BAVGPOST=0.999;BRSQ=0.664;LDAF=0.0022;AVGPOST=0.9990;RSQ=0.7944;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104277739 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104277747 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9626;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104277834 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.931;LDAF=0.0241;AVGPOST=0.9989;RSQ=0.9785;ERATE=0.0003;THETA=0.0002;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 104277933 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0729;AVGPOST=0.9991;RSQ=0.9952;ERATE=0.0003;THETA=0.0004;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 104277981 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7313;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104278141 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.986;LDAF=0.1037;AVGPOST=0.9994;RSQ=0.9972;ERATE=0.0003;THETA=0.0004;AC=227;AN=2184 GT:DS:GL:BD 0.10393773 0 1 104278248 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.987;LDAF=0.1016;AVGPOST=0.9989;RSQ=0.9951;ERATE=0.0004;THETA=0.0003;AC=222;AN=2184 GT:DS:GL:BD 0.10164835 0 1 104278258 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.8209;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104278282 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.678;LDAF=0.0027;AVGPOST=0.9982;RSQ=0.7638;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104278476 . ATG A 69 PASS INDEL;BAVGPOST=0.989;BRSQ=0.572;LDAF=0.0282;AVGPOST=0.9653;RSQ=0.4923;ERATE=0.0065;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104278622 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0078;AVGPOST=0.9933;RSQ=0.6628;ERATE=0.0007;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104278808 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0627;AVGPOST=0.9987;RSQ=0.9906;ERATE=0.0004;THETA=0.0002;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 104278932 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.551;LDAF=0.0025;AVGPOST=0.9964;RSQ=0.4091;ERATE=0.0008;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104278964 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.968;LDAF=0.0292;AVGPOST=0.9973;RSQ=0.9566;ERATE=0.0005;THETA=0.0003;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 104279180 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.245;LDAF=0.0095;AVGPOST=0.9874;RSQ=0.4622;ERATE=0.0008;THETA=0.0178;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104279801 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.836;BRSQ=0.615;LDAF=0.2614;AVGPOST=0.8498;RSQ=0.6946;ERATE=0.0032;THETA=0.0047;AC=489;AN=2184 GT:DS:GL:BD 0.22390109 0 1 104279813 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.833;BRSQ=0.624;LDAF=0.2592;AVGPOST=0.8434;RSQ=0.6820;ERATE=0.0023;THETA=0.0186;AC=478;AN=2184 GT:DS:GL:BD 0.21886447 0 1 104279817 . T TG 4808 PASS INDEL;BAVGPOST=0.827;BRSQ=0.537;LDAF=0.2177;AVGPOST=0.8314;RSQ=0.6289;ERATE=0.0018;THETA=0.0191;AC=396;AN=2184 GT:DS:GL:BD 0.18131869 0 1 104279823 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.437;LDAF=0.0045;AVGPOST=0.9917;RSQ=0.1890;ERATE=0.0007;THETA=0.0146;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104279874 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.899;BRSQ=0.326;LDAF=0.0695;AVGPOST=0.9182;RSQ=0.5067;ERATE=0.0028;THETA=0.0252;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 104279875 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.834;BRSQ=0.427;LDAF=0.1652;AVGPOST=0.8415;RSQ=0.5459;ERATE=0.0112;THETA=0.0130;AC=240;AN=2184 GT:DS:GL:BD 0.10989011 0 1 104280171 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.856;BRSQ=0.366;LDAF=0.1229;AVGPOST=0.8687;RSQ=0.5227;ERATE=0.0032;THETA=0.0095;AC=169;AN=2184 GT:DS:GL:BD 0.07738096 0 1 104280256 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.820;BRSQ=0.533;LDAF=0.2372;AVGPOST=0.8332;RSQ=0.6322;ERATE=0.0171;THETA=0.0202;AC=402;AN=2184 GT:DS:GL:BD 0.18406594 0 1 104280384 . ATAAAT A 2117 PASS INDEL;BAVGPOST=0.343;BRSQ=0.017;LDAF=0.7591;AVGPOST=0.6148;RSQ=0.0932;ERATE=0.0168;THETA=0.0290;AC=2127;AN=2184 GT:DS:GL:BD 0.97390109 1 1 104281277 . AAG A 67 PASS INDEL;BAVGPOST=0.983;BRSQ=0.363;LDAF=0.0149;AVGPOST=0.9798;RSQ=0.3662;ERATE=0.0018;THETA=0.0271;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104282515 . TTA T 86 PASS INDEL;BAVGPOST=0.633;BRSQ=0.010;LDAF=0.1503;AVGPOST=0.7348;RSQ=0.0812;ERATE=0.0079;THETA=0.0379;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104284099 . G GA 27 PASS INDEL;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0019;AVGPOST=0.9975;RSQ=0.4249;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104284405 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6176;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104284428 . TA T 112 PASS INDEL;BAVGPOST=0.999;BRSQ=0.729;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.5310;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104284435 . G GCGCAATCT 3893 PASS INDEL;BAVGPOST=0.911;BRSQ=0.334;LDAF=0.0936;AVGPOST=0.9085;RSQ=0.5933;ERATE=0.0065;THETA=0.0006;AC=163;AN=2184 GT:DS:GL:BD 0.07463370 0 1 104285171 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.725;LDAF=0.0170;AVGPOST=0.9924;RSQ=0.8092;ERATE=0.0007;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 104285411 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0048;AVGPOST=0.9996;RSQ=0.9631;ERATE=0.0005;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104285722 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6008;ERATE=0.0004;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104285754 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.4962;ERATE=0.0006;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104285815 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0031;AVGPOST=0.9997;RSQ=0.9652;ERATE=0.0004;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104285898 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8061;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104285921 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9373;ERATE=0.0004;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104285995 rs113868442 TAAATA T 490 PASS INDEL;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0046;AVGPOST=0.9994;RSQ=0.9385;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104286000 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104286067 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0127;AVGPOST=0.9992;RSQ=0.9734;ERATE=0.0003;THETA=0.0017;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104286086 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.650;LDAF=0.0047;AVGPOST=0.9959;RSQ=0.6297;ERATE=0.0008;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104286098 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0050;AVGPOST=0.9982;RSQ=0.8632;ERATE=0.0003;THETA=0.0044;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104286099 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.985;LDAF=0.0940;AVGPOST=0.9965;RSQ=0.9826;ERATE=0.0005;THETA=0.0006;AC=205;AN=2184 GT:DS:GL:BD 0.09386447 0 1 104286279 . CACA C 113 PASS INDEL;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6072;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104286338 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0130;AVGPOST=0.9997;RSQ=0.9881;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104286707 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7457;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104286760 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7304;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104286764 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104286870 . GAT G 416 PASS INDEL;BAVGPOST=0.977;BRSQ=0.638;LDAF=0.0574;AVGPOST=0.9425;RSQ=0.5592;ERATE=0.0191;THETA=0.0010;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 104286998 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5341;AVGPOST=0.9963;RSQ=0.9937;ERATE=0.0004;THETA=0.0004;AC=1168;AN=2184 GT:DS:GL:BD 0.53479856 1 1 104287080 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0126;AVGPOST=0.9994;RSQ=0.9775;ERATE=0.0003;THETA=0.0002;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104287225 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7467;ERATE=0.0006;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104287493 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6153;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104287494 . G GGGAAA 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.750;LDAF=0.0029;AVGPOST=0.9952;RSQ=0.3279;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104287777 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0148;AVGPOST=0.9996;RSQ=0.9879;ERATE=0.0004;THETA=0.0041;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104287793 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5330;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104287814 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.825;LDAF=0.0101;AVGPOST=0.9965;RSQ=0.8648;ERATE=0.0004;THETA=0.0011;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104287855 . T TTC 875 PASS INDEL;BAVGPOST=0.956;BRSQ=0.517;LDAF=0.0618;AVGPOST=0.9399;RSQ=0.5935;ERATE=0.0050;THETA=0.0007;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 104287888 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0048;AVGPOST=0.9996;RSQ=0.9587;ERATE=0.0004;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104287922 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.551;LDAF=0.0031;AVGPOST=0.9951;RSQ=0.3548;ERATE=0.0009;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104287977 . C CT 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7920;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104288251 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6447;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104288264 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.691;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5610;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104288273 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.787;LDAF=0.0074;AVGPOST=0.9968;RSQ=0.8360;ERATE=0.0007;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104288299 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.788;LDAF=0.0047;AVGPOST=0.9963;RSQ=0.6452;ERATE=0.0010;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104288402 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8177;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104288469 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9286;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104288558 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.781;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.7382;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104288593 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6428;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104288692 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5741;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104288857 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1859;AVGPOST=0.9973;RSQ=0.9936;ERATE=0.0005;THETA=0.0009;AC=407;AN=2184 GT:DS:GL:BD 0.18635531 0 1 104288929 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0045;AVGPOST=0.9989;RSQ=0.9045;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104289185 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5624;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104289264 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.987;LDAF=0.1873;AVGPOST=0.9963;RSQ=0.9914;ERATE=0.0007;THETA=0.0007;AC=412;AN=2184 GT:DS:GL:BD 0.18864469 0 1 104289289 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0031;AVGPOST=0.9982;RSQ=0.7211;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104289333 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7828;ERATE=0.0003;THETA=0.0051;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104289415 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104289575 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0050;AVGPOST=0.9990;RSQ=0.9191;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104289682 . C CT 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5470;ERATE=0.0008;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104289757 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.965;LDAF=0.1704;AVGPOST=0.9895;RSQ=0.9719;ERATE=0.0005;THETA=0.0009;AC=369;AN=2184 GT:DS:GL:BD 0.16895604 0 1 104289833 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0031;AVGPOST=0.9983;RSQ=0.8048;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104289909 . CCT C 93 PASS INDEL;BAVGPOST=0.985;BRSQ=0.649;LDAF=0.0355;AVGPOST=0.9661;RSQ=0.6028;ERATE=0.0111;THETA=0.0008;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 104289928 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.960;LDAF=0.1856;AVGPOST=0.9921;RSQ=0.9805;ERATE=0.0017;THETA=0.0002;AC=407;AN=2184 GT:DS:GL:BD 0.18635531 0 1 104289941 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.610;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5854;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104290192 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8174;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104290228 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9293;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104290248 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.989;LDAF=0.1852;AVGPOST=0.9954;RSQ=0.9882;ERATE=0.0008;THETA=0.0007;AC=402;AN=2184 GT:DS:GL:BD 0.18406594 0 1 104290266 . TCTCA T 452 PASS INDEL;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0018;AVGPOST=0.9995;RSQ=0.8803;ERATE=0.0004;THETA=0.0024;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104290337 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2001;AVGPOST=0.9974;RSQ=0.9934;ERATE=0.0004;THETA=0.0004;AC=438;AN=2184 GT:DS:GL:BD 0.20054945 0 1 104290361 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9131;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104290483 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9717;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104290553 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1614;AVGPOST=0.9984;RSQ=0.9950;ERATE=0.0004;THETA=0.0014;AC=352;AN=2184 GT:DS:GL:BD 0.16117217 0 1 104290586 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2642;AVGPOST=0.9964;RSQ=0.9931;ERATE=0.0007;THETA=0.0006;AC=577;AN=2184 GT:DS:GL:BD 0.26419413 0 1 104290587 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8705;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104290800 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0543;AVGPOST=0.9986;RSQ=0.9911;ERATE=0.0003;THETA=0.0011;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 104290838 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7217;ERATE=0.0004;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104290881 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7280;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104290893 . CA C 1555 PASS INDEL;BAVGPOST=0.946;BRSQ=0.838;LDAF=0.1707;AVGPOST=0.9416;RSQ=0.8618;ERATE=0.0051;THETA=0.0004;AC=385;AN=2184 GT:DS:GL:BD 0.17628205 0 1 104290966 rs71584651 AC A 21015 PASS INDEL;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.2101;AVGPOST=0.9945;RSQ=0.9870;ERATE=0.0011;THETA=0.0006;AC=458;AN=2184 GT:DS:GL:BD 0.20970696 0 1 104290967 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5408;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104290978 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6996;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104290979 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8390;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104290991 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4275;AVGPOST=0.9963;RSQ=0.9948;ERATE=0.0008;THETA=0.0032;AC=934;AN=2184 GT:DS:GL:BD 0.42765567 0 1 104291031 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104291077 . GC G 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7102;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104291109 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.2311;AVGPOST=0.9939;RSQ=0.9869;ERATE=0.0007;THETA=0.0023;AC=507;AN=2184 GT:DS:GL:BD 0.23214285 0 1 104291378 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.926;LDAF=0.0103;AVGPOST=0.9980;RSQ=0.9153;ERATE=0.0005;THETA=0.0059;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104291511 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.989;LDAF=0.1548;AVGPOST=0.9915;RSQ=0.9777;ERATE=0.0005;THETA=0.0066;AC=332;AN=2184 GT:DS:GL:BD 0.15201466 0 1 104291571 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0036;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104291723 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.8441;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104291807 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0035;AVGPOST=0.9993;RSQ=0.9134;ERATE=0.0003;THETA=0.0026;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104291826 rs78846282 CAG C 15786 PASS INDEL;BAVGPOST=0.988;BRSQ=0.974;LDAF=0.1773;AVGPOST=0.9809;RSQ=0.9489;ERATE=0.0038;THETA=0.0002;AC=384;AN=2184 GT:DS:GL:BD 0.17582418 0 1 104291869 . C CA 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5988;ERATE=0.0004;THETA=0.0169;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104291883 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6808;ERATE=0.0003;THETA=0.0170;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104291978 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5548;ERATE=0.0004;THETA=0.0173;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104291997 . GA G 12484 PASS INDEL;BAVGPOST=0.988;BRSQ=0.960;LDAF=0.1141;AVGPOST=0.9851;RSQ=0.9481;ERATE=0.0005;THETA=0.0009;AC=244;AN=2184 GT:DS:GL:BD 0.11172161 0 1 104292024 . AG A 1178 PASS INDEL;BAVGPOST=0.987;BRSQ=0.957;LDAF=0.1134;AVGPOST=0.9840;RSQ=0.9445;ERATE=0.0005;THETA=0.0031;AC=244;AN=2184 GT:DS:GL:BD 0.11172161 0 1 104292026 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0124;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104292098 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.971;LDAF=0.2321;AVGPOST=0.9867;RSQ=0.9726;ERATE=0.0036;THETA=0.0156;AC=500;AN=2184 GT:DS:GL:BD 0.22893773 0 1 104292129 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0037;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104292367 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.966;LDAF=0.0343;AVGPOST=0.9962;RSQ=0.9578;ERATE=0.0008;THETA=0.0062;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 104292400 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6352;ERATE=0.0003;THETA=0.0137;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104292410 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0172;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104292508 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.980;LDAF=0.0895;AVGPOST=0.9953;RSQ=0.9821;ERATE=0.0003;THETA=0.0109;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 104292611 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7455;ERATE=0.0004;THETA=0.0052;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104292679 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5218;ERATE=0.0004;THETA=0.0071;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104292712 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0007;AVGPOST=0.9989;RSQ=0.3124;ERATE=0.0006;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104292737 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0183;AVGPOST=0.9973;RSQ=0.9480;ERATE=0.0003;THETA=0.0039;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 104292754 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0001;AVGPOST=0.9998;RSQ=0.0498;ERATE=0.0003;THETA=0.0014;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104292775 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7573;ERATE=0.0003;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104292785 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0119;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104292880 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4978;ERATE=0.0003;THETA=0.0039;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104293122 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.926;LDAF=0.0045;AVGPOST=0.9985;RSQ=0.8812;ERATE=0.0003;THETA=0.0043;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104293140 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0085;AVGPOST=0.9991;RSQ=0.9516;ERATE=0.0003;THETA=0.0125;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104293220 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.901;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8655;ERATE=0.0004;THETA=0.0027;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104293592 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.0308;AVGPOST=0.9975;RSQ=0.9712;ERATE=0.0003;THETA=0.0081;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 104293621 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.941;LDAF=0.0969;AVGPOST=0.9871;RSQ=0.9452;ERATE=0.0006;THETA=0.0005;AC=206;AN=2184 GT:DS:GL:BD 0.09432235 0 1 104293632 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0124;AVGPOST=0.9980;RSQ=0.9429;ERATE=0.0003;THETA=0.0053;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104293637 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0043;AVGPOST=0.9988;RSQ=0.8848;ERATE=0.0003;THETA=0.0104;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104293648 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.0625;AVGPOST=0.9974;RSQ=0.9850;ERATE=0.0003;THETA=0.0029;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 104293679 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.719;LDAF=0.0023;AVGPOST=0.9994;RSQ=0.8960;ERATE=0.0003;THETA=0.0056;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104293775 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0047;AVGPOST=0.9987;RSQ=0.8707;ERATE=0.0008;THETA=0.0035;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104293776 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.882;LDAF=0.0056;AVGPOST=0.9984;RSQ=0.8997;ERATE=0.0003;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104293901 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104293911 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5620;ERATE=0.0004;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104293922 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0098;AVGPOST=0.9994;RSQ=0.9722;ERATE=0.0003;THETA=0.0040;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104294057 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0028;AVGPOST=0.9997;RSQ=0.9473;ERATE=0.0003;THETA=0.0035;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104294146 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0065;AVGPOST=0.9981;RSQ=0.8842;ERATE=0.0003;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104294365 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7343;ERATE=0.0004;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104294377 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6723;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104294457 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0045;AVGPOST=0.9980;RSQ=0.8409;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104294506 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0331;AVGPOST=0.9984;RSQ=0.9820;ERATE=0.0003;THETA=0.0006;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 104294710 . TG T 127 PASS INDEL;BAVGPOST=1.000;BRSQ=0.730;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4676;ERATE=0.0005;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104294795 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.724;LDAF=0.0032;AVGPOST=0.9978;RSQ=0.7098;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104294799 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0035;AVGPOST=0.9984;RSQ=0.7920;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104294806 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.949;LDAF=0.9787;AVGPOST=0.9934;RSQ=0.8716;ERATE=0.0009;THETA=0.0006;AC=2142;AN=2184 GT:DS:GL:BD 0.98076922 1 1 104295003 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.596;LDAF=0.0169;AVGPOST=0.9829;RSQ=0.6150;ERATE=0.0006;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104295191 . GGGAA G 1691 PASS INDEL;BAVGPOST=0.981;BRSQ=0.719;LDAF=0.0411;AVGPOST=0.9671;RSQ=0.6900;ERATE=0.0056;THETA=0.0009;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 104295270 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0042;AVGPOST=0.9969;RSQ=0.7567;ERATE=0.0005;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104295326 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4816;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104295329 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0039;AVGPOST=0.9975;RSQ=0.7368;ERATE=0.0006;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104295487 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.612;LDAF=0.0027;AVGPOST=0.9958;RSQ=0.3499;ERATE=0.0006;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104295594 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104295685 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4879;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104295753 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6894;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104295772 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4450;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104295803 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.681;LDAF=0.0030;AVGPOST=0.9961;RSQ=0.4649;ERATE=0.0005;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104295898 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7225;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104296003 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.773;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4867;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104296244 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0017;AVGPOST=0.9977;RSQ=0.4468;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104296253 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.620;LDAF=0.0027;AVGPOST=0.9967;RSQ=0.5186;ERATE=0.0009;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104296306 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6115;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104296359 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0018;AVGPOST=0.9978;RSQ=0.5575;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104296363 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8344;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104296364 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.6781;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104296428 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6380;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104296544 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0061;AVGPOST=0.9987;RSQ=0.9210;ERATE=0.0003;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104296554 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4086;ERATE=0.0004;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104296627 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9568;ERATE=0.0003;THETA=0.0016;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104296641 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7243;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104296676 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0029;AVGPOST=0.9979;RSQ=0.7032;ERATE=0.0005;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104296708 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8440;ERATE=0.0004;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104296744 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0063;AVGPOST=0.9963;RSQ=0.8021;ERATE=0.0004;THETA=0.0011;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104296778 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6252;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104297026 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6738;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104297035 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.803;LDAF=0.0053;AVGPOST=0.9974;RSQ=0.7885;ERATE=0.0005;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104297041 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0039;AVGPOST=0.9993;RSQ=0.9123;ERATE=0.0005;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104297051 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.709;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4532;ERATE=0.0005;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104297149 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.626;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.6092;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104297184 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.988;LDAF=0.1991;AVGPOST=0.9781;RSQ=0.9542;ERATE=0.0011;THETA=0.0010;AC=431;AN=2184 GT:DS:GL:BD 0.19734432 0 1 104297193 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.771;LDAF=0.0052;AVGPOST=0.9936;RSQ=0.5165;ERATE=0.0007;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104297287 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.616;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5913;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104297353 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0023;AVGPOST=0.9963;RSQ=0.3470;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104297474 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5826;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104297663 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0104;AVGPOST=0.9984;RSQ=0.9485;ERATE=0.0005;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104297679 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0104;AVGPOST=0.9982;RSQ=0.9404;ERATE=0.0004;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104297741 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.691;LDAF=0.0027;AVGPOST=0.9970;RSQ=0.5714;ERATE=0.0006;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104297756 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5697;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104297769 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0329;AVGPOST=0.9988;RSQ=0.9851;ERATE=0.0004;THETA=0.0005;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 104297798 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5043;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104297944 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.269;LDAF=0.0196;AVGPOST=0.9715;RSQ=0.4005;ERATE=0.0018;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104298087 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.927;BRSQ=0.189;LDAF=0.0968;AVGPOST=0.8548;RSQ=0.3346;ERATE=0.0077;THETA=0.0004;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 104298099 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0013;AVGPOST=1.0000;RSQ=0.9839;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104298291 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.817;LDAF=0.0631;AVGPOST=0.9661;RSQ=0.7882;ERATE=0.0097;THETA=0.0002;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 104298301 . C CT 1150 PASS INDEL;BAVGPOST=0.935;BRSQ=0.590;LDAF=0.1253;AVGPOST=0.8738;RSQ=0.5152;ERATE=0.0330;THETA=0.0003;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 104298311 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.771;LDAF=0.8910;AVGPOST=0.9382;RSQ=0.7566;ERATE=0.0181;THETA=0.0005;AC=1980;AN=2184 GT:DS:GL:BD 0.90659338 1 1 104298314 rs10653831 TTTTC T 52 PASS INDEL;BAVGPOST=0.998;BRSQ=0.676;LDAF=0.0104;AVGPOST=0.9884;RSQ=0.5509;ERATE=0.0022;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104298339 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.964;LDAF=0.5187;AVGPOST=0.9504;RSQ=0.9283;ERATE=0.0059;THETA=0.0005;AC=1142;AN=2184 GT:DS:GL:BD 0.52289379 1 1 104298425 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5091;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104298449 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104298570 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0115;AVGPOST=0.9998;RSQ=0.9923;ERATE=0.0002;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104298686 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0041;AVGPOST=0.9992;RSQ=0.9122;ERATE=0.0002;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104298872 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1846;AVGPOST=0.9973;RSQ=0.9929;ERATE=0.0005;THETA=0.0006;AC=401;AN=2184 GT:DS:GL:BD 0.18360806 0 1 104298873 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1822;AVGPOST=0.9990;RSQ=0.9970;ERATE=0.0005;THETA=0.0006;AC=395;AN=2184 GT:DS:GL:BD 0.18086080 0 1 104298935 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4704;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104298965 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4335;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104299035 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.975;LDAF=0.0388;AVGPOST=0.9989;RSQ=0.9878;ERATE=0.0003;THETA=0.0003;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 104299071 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6002;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104299131 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.972;LDAF=0.5306;AVGPOST=0.9633;RSQ=0.9485;ERATE=0.0044;THETA=0.0004;AC=1165;AN=2184 GT:DS:GL:BD 0.53342491 1 1 104299246 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0026;AVGPOST=0.9990;RSQ=0.8166;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104299278 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7477;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104299404 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0197;AVGPOST=0.9999;RSQ=0.9969;ERATE=0.0002;THETA=0.0003;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 104299452 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0199;AVGPOST=0.9992;RSQ=0.9828;ERATE=0.0004;THETA=0.0004;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 104299729 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0785;AVGPOST=0.9993;RSQ=0.9957;ERATE=0.0003;THETA=0.0003;AC=171;AN=2184 GT:DS:GL:BD 0.07829671 0 1 104299847 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.750;LDAF=0.0086;AVGPOST=0.9941;RSQ=0.7548;ERATE=0.0004;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104300029 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0021;AVGPOST=0.9974;RSQ=0.4852;ERATE=0.0009;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104300075 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8136;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104300164 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0781;AVGPOST=0.9990;RSQ=0.9942;ERATE=0.0004;THETA=0.0002;AC=171;AN=2184 GT:DS:GL:BD 0.07829671 0 1 104300293 . CTG C 760 PASS INDEL;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0040;AVGPOST=0.9991;RSQ=0.8995;ERATE=0.0002;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104300334 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6034;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104300450 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4165;ERATE=0.0002;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104300545 . CT C 150 PASS INDEL;BAVGPOST=0.963;BRSQ=0.422;LDAF=0.0676;AVGPOST=0.9121;RSQ=0.4524;ERATE=0.0182;THETA=0.0003;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 104300622 . A AG 20 PASS INDEL;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0022;AVGPOST=0.9978;RSQ=0.6163;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104300679 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2766;AVGPOST=0.9978;RSQ=0.9955;ERATE=0.0005;THETA=0.0006;AC=605;AN=2184 GT:DS:GL:BD 0.27701464 0 1 104300731 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4594;AVGPOST=0.9981;RSQ=0.9970;ERATE=0.0005;THETA=0.0027;AC=1001;AN=2184 GT:DS:GL:BD 0.45833334 0 1 104300810 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0120;AVGPOST=0.9995;RSQ=0.9816;ERATE=0.0004;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104300821 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0216;AVGPOST=0.9986;RSQ=0.9752;ERATE=0.0004;THETA=0.0004;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 104300935 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5787;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104301196 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0022;AVGPOST=0.9966;RSQ=0.4095;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104301443 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4249;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104301791 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0120;AVGPOST=0.9995;RSQ=0.9799;ERATE=0.0003;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104301942 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.7128;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104302001 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5900;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104302105 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0652;AVGPOST=0.9994;RSQ=0.9959;ERATE=0.0003;THETA=0.0005;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 104302135 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104302268 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.642;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7353;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104302495 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0150;AVGPOST=0.9942;RSQ=0.8389;ERATE=0.0008;THETA=0.0015;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104302646 . C CAAA 685 PASS INDEL;BAVGPOST=0.898;BRSQ=0.378;LDAF=0.1313;AVGPOST=0.8637;RSQ=0.5305;ERATE=0.0075;THETA=0.0005;AC=203;AN=2184 GT:DS:GL:BD 0.09294872 0 1 104302715 rs59856247 A AAT 5039 PASS INDEL;BAVGPOST=0.934;BRSQ=0.648;LDAF=0.1079;AVGPOST=0.9327;RSQ=0.7386;ERATE=0.0023;THETA=0.0004;AC=207;AN=2184 GT:DS:GL:BD 0.09478022 0 1 104302730 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.959;BRSQ=0.656;LDAF=0.0707;AVGPOST=0.9543;RSQ=0.7332;ERATE=0.0015;THETA=0.0005;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 104302744 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6762;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104302914 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1825;AVGPOST=0.9985;RSQ=0.9966;ERATE=0.0004;THETA=0.0005;AC=395;AN=2184 GT:DS:GL:BD 0.18086080 0 1 104303155 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0211;AVGPOST=0.9998;RSQ=0.9962;ERATE=0.0003;THETA=0.0003;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 104303241 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6913;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104303291 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104303292 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.732;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.8568;ERATE=0.0003;THETA=0.0021;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104303554 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.813;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104303591 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3398;AVGPOST=0.9956;RSQ=0.9940;ERATE=0.0004;THETA=0.0006;AC=743;AN=2184 GT:DS:GL:BD 0.34020147 0 1 104303593 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.651;LDAF=0.0181;AVGPOST=0.9874;RSQ=0.7148;ERATE=0.0009;THETA=0.0006;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104303612 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104304171 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104304172 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7370;ERATE=0.0004;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104304201 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.747;LDAF=0.0027;AVGPOST=0.9966;RSQ=0.5132;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104304226 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.688;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6827;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104304398 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.7018;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104304465 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.7395;ERATE=0.0003;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104304469 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.901;LDAF=0.0052;AVGPOST=0.9973;RSQ=0.7738;ERATE=0.0008;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104304476 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.675;LDAF=0.0046;AVGPOST=0.9960;RSQ=0.6765;ERATE=0.0004;THETA=0.0013;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104304488 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.570;LDAF=0.0052;AVGPOST=0.9939;RSQ=0.5302;ERATE=0.0009;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104304489 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.692;LDAF=0.0027;AVGPOST=0.9956;RSQ=0.4317;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104304532 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.676;LDAF=0.0063;AVGPOST=0.9948;RSQ=0.6735;ERATE=0.0013;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104304548 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.668;LDAF=0.0320;AVGPOST=0.9649;RSQ=0.5621;ERATE=0.0108;THETA=0.0012;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 104304583 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0311;AVGPOST=0.9985;RSQ=0.9807;ERATE=0.0004;THETA=0.0002;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 104304687 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.509;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4368;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104304725 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0083;AVGPOST=0.9971;RSQ=0.8598;ERATE=0.0005;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104304775 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.602;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5615;ERATE=0.0005;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104304965 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.966;LDAF=0.6084;AVGPOST=0.9523;RSQ=0.9418;ERATE=0.0070;THETA=0.0008;AC=1328;AN=2184 GT:DS:GL:BD 0.60805863 1 1 104304972 . CAA C 54 PASS INDEL;BAVGPOST=1.000;BRSQ=0.700;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.6725;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104305021 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0072;AVGPOST=0.9974;RSQ=0.8588;ERATE=0.0007;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104305067 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3415;AVGPOST=0.9971;RSQ=0.9961;ERATE=0.0007;THETA=0.0009;AC=746;AN=2184 GT:DS:GL:BD 0.34157509 0 1 104305168 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.792;LDAF=0.0068;AVGPOST=0.9943;RSQ=0.7144;ERATE=0.0005;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104305200 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.645;LDAF=0.0020;AVGPOST=0.9969;RSQ=0.3246;ERATE=0.0007;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104305224 . CTAAAAAAA C 146 PASS INDEL;BAVGPOST=0.988;BRSQ=0.508;LDAF=0.0159;AVGPOST=0.9898;RSQ=0.7366;ERATE=0.0013;THETA=0.0012;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104305237 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7430;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104305297 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.604;LDAF=0.0159;AVGPOST=0.9837;RSQ=0.5986;ERATE=0.0058;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104305337 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3410;AVGPOST=0.9973;RSQ=0.9964;ERATE=0.0006;THETA=0.0006;AC=746;AN=2184 GT:DS:GL:BD 0.34157509 0 1 104305344 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0005;AVGPOST=0.9991;RSQ=0.2793;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104305371 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8526;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104305427 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104305432 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104305584 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7290;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104305655 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104305694 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.952;LDAF=0.0149;AVGPOST=0.9993;RSQ=0.9821;ERATE=0.0003;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104305742 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4986;AVGPOST=0.9982;RSQ=0.9978;ERATE=0.0004;THETA=0.0004;AC=1086;AN=2184 GT:DS:GL:BD 0.49725273 0 1 104305997 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9890;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104306006 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104306009 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104306044 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.467;LDAF=0.0044;AVGPOST=0.9941;RSQ=0.5056;ERATE=0.0017;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104306050 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9890;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104306103 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104306129 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0002;AVGPOST=0.9996;RSQ=0.0718;ERATE=0.0003;THETA=0.0008;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104306221 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8176;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104306292 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0051;AVGPOST=0.9978;RSQ=0.8297;ERATE=0.0005;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104306416 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.293;LDAF=0.0063;AVGPOST=0.9927;RSQ=0.5080;ERATE=0.0013;THETA=0.0021;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104306424 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.860;LDAF=0.0632;AVGPOST=0.9766;RSQ=0.8608;ERATE=0.0006;THETA=0.0007;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 104306445 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6250;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104306465 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9863;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104306570 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5258;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104306595 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2844;AVGPOST=0.9964;RSQ=0.9954;ERATE=0.0004;THETA=0.0006;AC=622;AN=2184 GT:DS:GL:BD 0.28479853 0 1 104306694 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0068;AVGPOST=0.9990;RSQ=0.9305;ERATE=0.0004;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104306757 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.627;LDAF=0.0032;AVGPOST=0.9972;RSQ=0.6769;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104306872 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.936;LDAF=0.9489;AVGPOST=0.9824;RSQ=0.8745;ERATE=0.0023;THETA=0.0007;AC=2083;AN=2184 GT:DS:GL:BD 0.95375460 1 1 104307023 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.691;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8422;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104307044 . A AT 378 PASS INDEL;BAVGPOST=0.969;BRSQ=0.511;LDAF=0.0391;AVGPOST=0.9611;RSQ=0.5877;ERATE=0.0033;THETA=0.0006;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 104307079 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.873;LDAF=0.0224;AVGPOST=0.9908;RSQ=0.8312;ERATE=0.0034;THETA=0.0006;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 104307085 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.970;LDAF=0.4858;AVGPOST=0.9798;RSQ=0.9752;ERATE=0.0048;THETA=0.0010;AC=1065;AN=2184 GT:DS:GL:BD 0.48763737 0 1 104307087 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0135;AVGPOST=0.9993;RSQ=0.9740;ERATE=0.0003;THETA=0.0008;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104307103 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0037;AVGPOST=0.9983;RSQ=0.8256;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104307105 . C CT 969 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0072;AVGPOST=0.9992;RSQ=0.9521;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104307180 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1127;AVGPOST=0.9988;RSQ=0.9953;ERATE=0.0004;THETA=0.0009;AC=247;AN=2184 GT:DS:GL:BD 0.11309524 0 1 104307249 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9531;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104307503 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.4972;AVGPOST=0.9993;RSQ=0.9989;ERATE=0.0004;THETA=0.0004;AC=1084;AN=2184 GT:DS:GL:BD 0.49633700 0 1 104307642 . CTG C 1866 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0108;AVGPOST=0.9995;RSQ=0.9757;ERATE=0.0003;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104307664 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0650;AVGPOST=0.9978;RSQ=0.9847;ERATE=0.0004;THETA=0.0003;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 104307674 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5154;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104307678 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0041;AVGPOST=0.9999;RSQ=0.9841;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104307739 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0106;AVGPOST=0.9999;RSQ=0.9939;ERATE=0.0003;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104307753 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.878;LDAF=0.0102;AVGPOST=0.9973;RSQ=0.8915;ERATE=0.0004;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104307776 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1011;AVGPOST=0.9976;RSQ=0.9914;ERATE=0.0004;THETA=0.0003;AC=219;AN=2184 GT:DS:GL:BD 0.10027473 0 1 104307777 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0308;AVGPOST=0.9996;RSQ=0.9947;ERATE=0.0003;THETA=0.0008;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 104308044 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6525;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104308086 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9652;AVGPOST=0.9997;RSQ=0.9959;ERATE=0.0003;THETA=0.0017;AC=2108;AN=2184 GT:DS:GL:BD 0.96520144 1 1 104308199 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.5895;AVGPOST=0.9965;RSQ=0.9945;ERATE=0.0007;THETA=0.0003;AC=1288;AN=2184 GT:DS:GL:BD 0.58974361 1 1 104308294 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0028;AVGPOST=0.9971;RSQ=0.6682;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104308328 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.963;LDAF=0.0258;AVGPOST=0.9970;RSQ=0.9571;ERATE=0.0004;THETA=0.0006;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 104308349 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0252;AVGPOST=0.9995;RSQ=0.9914;ERATE=0.0003;THETA=0.0006;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 104308411 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0127;AVGPOST=0.9994;RSQ=0.9800;ERATE=0.0003;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104308718 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0027;AVGPOST=0.9990;RSQ=0.8450;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104308741 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9436;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104308861 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0100;AVGPOST=0.9995;RSQ=0.9783;ERATE=0.0003;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104308902 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.970;LDAF=0.0142;AVGPOST=0.9985;RSQ=0.9596;ERATE=0.0003;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 104308989 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5913;AVGPOST=0.9963;RSQ=0.9940;ERATE=0.0009;THETA=0.0004;AC=1290;AN=2184 GT:DS:GL:BD 0.59065932 1 1 104309016 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0334;AVGPOST=0.9999;RSQ=0.9988;ERATE=0.0003;THETA=0.0008;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 104309074 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0146;AVGPOST=0.9999;RSQ=0.9954;ERATE=0.0003;THETA=0.0005;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104309115 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104309258 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104309368 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9418;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104309375 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0629;AVGPOST=0.9995;RSQ=0.9959;ERATE=0.0003;THETA=0.0008;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 104309399 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6274;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104309405 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8951;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104309442 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5777;AVGPOST=0.9981;RSQ=0.9967;ERATE=0.0005;THETA=0.0016;AC=1262;AN=2184 GT:DS:GL:BD 0.57783884 1 1 104309608 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7064;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104309656 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.8563;ERATE=0.0006;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104309755 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0033;AVGPOST=0.9984;RSQ=0.7756;ERATE=0.0006;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104309760 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0048;AVGPOST=0.9986;RSQ=0.8659;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104309789 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0031;AVGPOST=0.9994;RSQ=0.9024;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104309812 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7565;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104309911 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.6296;AVGPOST=0.9980;RSQ=0.9963;ERATE=0.0006;THETA=0.0005;AC=1376;AN=2184 GT:DS:GL:BD 0.63003665 1 1 104309974 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0031;AVGPOST=0.9985;RSQ=0.8386;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104310020 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0058;AVGPOST=0.9991;RSQ=0.9306;ERATE=0.0005;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104310065 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.926;LDAF=0.0054;AVGPOST=0.9993;RSQ=0.9464;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104310070 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0630;AVGPOST=0.9997;RSQ=0.9976;ERATE=0.0003;THETA=0.0005;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 104310107 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0012;AVGPOST=0.9982;RSQ=0.3577;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104310134 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.767;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4889;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104310135 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0147;AVGPOST=0.9999;RSQ=0.9970;ERATE=0.0003;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104310143 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104310216 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9549;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104310222 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0027;AVGPOST=0.9997;RSQ=0.9558;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104310268 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7667;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104310340 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6034;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104310395 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0072;AVGPOST=0.9980;RSQ=0.9069;ERATE=0.0003;THETA=0.0025;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104310406 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4821;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104310507 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7129;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104310510 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0146;AVGPOST=1.0000;RSQ=0.9985;ERATE=0.0003;THETA=0.0007;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104310559 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104310620 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0037;AVGPOST=0.9991;RSQ=0.9156;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104310663 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9359;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104310677 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6253;AVGPOST=0.9971;RSQ=0.9954;ERATE=0.0006;THETA=0.0005;AC=1366;AN=2184 GT:DS:GL:BD 0.62545788 1 1 104310701 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8702;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104310734 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.6129;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104310756 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6296;AVGPOST=0.9990;RSQ=0.9981;ERATE=0.0005;THETA=0.0006;AC=1376;AN=2184 GT:DS:GL:BD 0.63003665 1 1 104310889 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0095;AVGPOST=0.9988;RSQ=0.9557;ERATE=0.0003;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104310948 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.743;LDAF=0.0007;AVGPOST=0.9991;RSQ=0.4392;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104310958 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9927;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104311013 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8504;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104311107 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5904;AVGPOST=0.9981;RSQ=0.9965;ERATE=0.0007;THETA=0.0007;AC=1290;AN=2184 GT:DS:GL:BD 0.59065932 1 1 104311182 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9863;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104311196 . C CA 5288 PASS INDEL;BAVGPOST=0.985;BRSQ=0.908;LDAF=0.0905;AVGPOST=0.9733;RSQ=0.8733;ERATE=0.0036;THETA=0.0002;AC=184;AN=2184 GT:DS:GL:BD 0.08424909 0 1 104311269 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0041;AVGPOST=0.9992;RSQ=0.9202;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104311330 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.6294;AVGPOST=0.9980;RSQ=0.9969;ERATE=0.0003;THETA=0.0006;AC=1375;AN=2184 GT:DS:GL:BD 0.62957877 1 1 104311430 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9741;ERATE=0.0003;THETA=0.0012;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104311466 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7143;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104311514 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8467;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104311539 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.926;LDAF=0.0161;AVGPOST=0.9935;RSQ=0.8530;ERATE=0.0015;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104311603 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5887;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104311606 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6301;AVGPOST=0.9990;RSQ=0.9981;ERATE=0.0004;THETA=0.0006;AC=1377;AN=2184 GT:DS:GL:BD 0.63049453 1 1 104311879 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7732;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104311894 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.9041;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104311925 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0138;AVGPOST=0.9971;RSQ=0.9268;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104311951 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0375;AVGPOST=0.9991;RSQ=0.9923;ERATE=0.0003;THETA=0.0108;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 104311999 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.752;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6386;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104312201 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0003;AVGPOST=0.9997;RSQ=0.6564;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104312216 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0146;AVGPOST=0.9999;RSQ=0.9954;ERATE=0.0003;THETA=0.0007;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104312388 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5901;AVGPOST=0.9981;RSQ=0.9968;ERATE=0.0006;THETA=0.0002;AC=1290;AN=2184 GT:DS:GL:BD 0.59065932 1 1 104312401 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6213;AVGPOST=0.9973;RSQ=0.9952;ERATE=0.0008;THETA=0.0010;AC=1358;AN=2184 GT:DS:GL:BD 0.62179488 1 1 104312481 rs113419522 A ACT 41376 PASS INDEL;BAVGPOST=0.974;BRSQ=0.955;LDAF=0.6216;AVGPOST=0.9879;RSQ=0.9784;ERATE=0.0006;THETA=0.0005;AC=1356;AN=2184 GT:DS:GL:BD 0.62087911 1 1 104312515 rs71582246 C CTT 86270 PASS INDEL;BAVGPOST=0.974;BRSQ=0.955;LDAF=0.6228;AVGPOST=0.9806;RSQ=0.9684;ERATE=0.0028;THETA=0.0006;AC=1360;AN=2184 GT:DS:GL:BD 0.62271065 1 1 104312516 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0358;AVGPOST=0.9994;RSQ=0.9953;ERATE=0.0003;THETA=0.0026;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 104312586 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0027;AVGPOST=0.9999;RSQ=0.9841;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104312619 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0034;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104312703 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0084;AVGPOST=0.9996;RSQ=0.9787;ERATE=0.0003;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104312784 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0363;AVGPOST=0.9995;RSQ=0.9956;ERATE=0.0003;THETA=0.0003;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 104312806 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0359;AVGPOST=0.9996;RSQ=0.9973;ERATE=0.0003;THETA=0.0002;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 104312822 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7220;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104312831 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.7677;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104312856 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6206;AVGPOST=0.9992;RSQ=0.9985;ERATE=0.0003;THETA=0.0005;AC=1356;AN=2184 GT:DS:GL:BD 0.62087911 1 1 104312880 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.920;LDAF=0.0160;AVGPOST=0.9968;RSQ=0.9183;ERATE=0.0006;THETA=0.0007;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 104312958 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0383;AVGPOST=0.9989;RSQ=0.9894;ERATE=0.0004;THETA=0.0008;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 104313001 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0107;AVGPOST=0.9995;RSQ=0.9765;ERATE=0.0003;THETA=0.0017;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104313002 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9244;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104313036 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8264;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104313060 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5085;AVGPOST=0.9971;RSQ=0.9960;ERATE=0.0004;THETA=0.0010;AC=1111;AN=2184 GT:DS:GL:BD 0.50869966 1 1 104313081 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.6196;AVGPOST=0.9956;RSQ=0.9917;ERATE=0.0014;THETA=0.0010;AC=1356;AN=2184 GT:DS:GL:BD 0.62087911 1 1 104313155 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9997;RSQ=0.9597;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104313208 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0221;AVGPOST=0.9996;RSQ=0.9913;ERATE=0.0003;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 104313233 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.510;LDAF=0.0037;AVGPOST=0.9969;RSQ=0.6136;ERATE=0.0008;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104313395 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.790;LDAF=0.0603;AVGPOST=0.9676;RSQ=0.7815;ERATE=0.0009;THETA=0.0007;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 104313474 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4714;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104313516 . TA T 482 PASS INDEL;BAVGPOST=0.998;BRSQ=0.763;LDAF=0.0040;AVGPOST=0.9974;RSQ=0.7457;ERATE=0.0008;THETA=0.0046;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104313552 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.925;LDAF=0.0138;AVGPOST=0.9991;RSQ=0.9742;ERATE=0.0004;THETA=0.0032;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104313949 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.758;LDAF=0.0119;AVGPOST=0.9930;RSQ=0.7605;ERATE=0.0004;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104313975 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0027;AVGPOST=0.9973;RSQ=0.5995;ERATE=0.0006;THETA=0.0020;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104313976 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4133;ERATE=0.0004;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104313980 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0563;AVGPOST=0.9968;RSQ=0.9777;ERATE=0.0003;THETA=0.0023;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 104314019 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.738;LDAF=0.0034;AVGPOST=0.9968;RSQ=0.5712;ERATE=0.0008;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104314024 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0338;AVGPOST=0.9959;RSQ=0.9553;ERATE=0.0005;THETA=0.0015;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 104314118 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7297;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104314228 . AAAAAAAAG A 10348 PASS INDEL;BAVGPOST=0.987;BRSQ=0.939;LDAF=0.1094;AVGPOST=0.9910;RSQ=0.9665;ERATE=0.0005;THETA=0.0010;AC=243;AN=2184 GT:DS:GL:BD 0.11126374 0 1 104314245 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.663;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5273;ERATE=0.0005;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104314258 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4859;ERATE=0.0004;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104314405 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104314418 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5935;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104314454 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104314456 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.976;LDAF=0.0474;AVGPOST=0.9985;RSQ=0.9861;ERATE=0.0004;THETA=0.0011;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 104314491 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.847;LDAF=0.0097;AVGPOST=0.9952;RSQ=0.7843;ERATE=0.0009;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104314519 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.749;LDAF=0.0354;AVGPOST=0.9741;RSQ=0.6888;ERATE=0.0012;THETA=0.0006;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 104314619 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.408;LDAF=0.0023;AVGPOST=0.9968;RSQ=0.4627;ERATE=0.0008;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104314825 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.561;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.6906;ERATE=0.0006;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104315178 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0024;AVGPOST=0.9985;RSQ=0.7088;ERATE=0.0007;THETA=0.0018;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104315180 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0058;AVGPOST=0.9991;RSQ=0.9315;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104315206 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.903;LDAF=0.0131;AVGPOST=0.9967;RSQ=0.9036;ERATE=0.0003;THETA=0.0010;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104315326 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0324;AVGPOST=0.9997;RSQ=0.9953;ERATE=0.0003;THETA=0.0010;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 104315383 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.749;LDAF=0.0361;AVGPOST=0.9749;RSQ=0.7006;ERATE=0.0156;THETA=0.0010;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 104315460 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.420;LDAF=0.0095;AVGPOST=0.9888;RSQ=0.5084;ERATE=0.0035;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104315547 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0054;AVGPOST=0.9992;RSQ=0.9308;ERATE=0.0008;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104315751 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104315767 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0007;AVGPOST=0.9990;RSQ=0.3835;ERATE=0.0005;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104315784 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0051;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104315800 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7995;ERATE=0.0003;THETA=0.0050;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104315855 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0468;AVGPOST=0.9995;RSQ=0.9952;ERATE=0.0003;THETA=0.0018;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 104315877 . TA T 52 PASS INDEL;BAVGPOST=0.996;BRSQ=0.667;LDAF=0.0064;AVGPOST=0.9942;RSQ=0.6477;ERATE=0.0015;THETA=0.0058;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104315940 rs56074004 TA T 3204 PASS INDEL;BAVGPOST=0.969;BRSQ=0.777;LDAF=0.0842;AVGPOST=0.9652;RSQ=0.8288;ERATE=0.0088;THETA=0.0029;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 104315944 . TA T 162 PASS INDEL;BAVGPOST=0.995;BRSQ=0.672;LDAF=0.0080;AVGPOST=0.9934;RSQ=0.6659;ERATE=0.0026;THETA=0.0010;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104315948 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.958;LDAF=0.0195;AVGPOST=0.9970;RSQ=0.9430;ERATE=0.0006;THETA=0.0052;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 104316173 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.906;LDAF=0.0225;AVGPOST=0.9939;RSQ=0.9041;ERATE=0.0005;THETA=0.0041;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 104316176 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.980;LDAF=0.0776;AVGPOST=0.9883;RSQ=0.9416;ERATE=0.0007;THETA=0.0016;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 104316181 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0102;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104316341 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8473;ERATE=0.0003;THETA=0.0085;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104316495 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0032;AVGPOST=0.9979;RSQ=0.7207;ERATE=0.0004;THETA=0.0023;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104316698 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.855;LDAF=0.0124;AVGPOST=0.9963;RSQ=0.8710;ERATE=0.0006;THETA=0.0022;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104316720 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104316762 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7262;ERATE=0.0007;THETA=0.0039;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104316834 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0156;AVGPOST=0.9998;RSQ=0.9949;ERATE=0.0004;THETA=0.0018;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 104316962 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8974;ERATE=0.0007;THETA=0.0051;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104316986 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.896;LDAF=0.0216;AVGPOST=0.9947;RSQ=0.8993;ERATE=0.0005;THETA=0.0038;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 104316996 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9470;ERATE=0.0003;THETA=0.0087;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104317030 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9036;ERATE=0.0004;THETA=0.0049;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104317149 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0003;THETA=0.0050;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104317173 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0061;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104317217 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.964;LDAF=0.1483;AVGPOST=0.9810;RSQ=0.9455;ERATE=0.0009;THETA=0.0178;AC=317;AN=2184 GT:DS:GL:BD 0.14514652 0 1 104317246 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0012;AVGPOST=0.9983;RSQ=0.3967;ERATE=0.0003;THETA=0.0115;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104317328 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0099;AVGPOST=0.9994;RSQ=0.9716;ERATE=0.0003;THETA=0.0239;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104317393 . AT A 35 PASS INDEL;BAVGPOST=0.999;BRSQ=0.669;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8177;ERATE=0.0004;THETA=0.0119;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104317473 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.853;LDAF=0.0236;AVGPOST=0.9922;RSQ=0.8635;ERATE=0.0007;THETA=0.0498;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 104317526 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.618;LDAF=0.0025;AVGPOST=0.9977;RSQ=0.6438;ERATE=0.0004;THETA=0.0249;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104317603 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0014;AVGPOST=0.9986;RSQ=0.5997;ERATE=0.0004;THETA=0.0126;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104317634 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0056;AVGPOST=0.9959;RSQ=0.6655;ERATE=0.0024;THETA=0.0161;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104317722 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.740;LDAF=0.0060;AVGPOST=0.9958;RSQ=0.7357;ERATE=0.0010;THETA=0.0152;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104317742 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0031;AVGPOST=0.9994;RSQ=0.9031;ERATE=0.0004;THETA=0.0067;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104317853 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5072;ERATE=0.0003;THETA=0.0173;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104317867 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8366;ERATE=0.0005;THETA=0.0148;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104317978 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7354;ERATE=0.0004;THETA=0.0375;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104318005 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.829;LDAF=0.0034;AVGPOST=0.9986;RSQ=0.8294;ERATE=0.0014;THETA=0.0216;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104318013 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.8037;ERATE=0.0003;THETA=0.0195;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104318057 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0100;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104318296 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.902;LDAF=0.0415;AVGPOST=0.9902;RSQ=0.9074;ERATE=0.0007;THETA=0.0109;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 104318389 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.2402;AVGPOST=0.9968;RSQ=0.9938;ERATE=0.0004;THETA=0.0004;AC=523;AN=2184 GT:DS:GL:BD 0.23946886 0 1 104318402 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104318474 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104318489 . AG A 108 PASS INDEL;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.6277;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104318489 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6295;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104318581 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0084;AVGPOST=0.9997;RSQ=0.9844;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104318728 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.2407;AVGPOST=0.9967;RSQ=0.9938;ERATE=0.0004;THETA=0.0004;AC=523;AN=2184 GT:DS:GL:BD 0.23946886 0 1 104318793 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.9208;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104318805 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104318862 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104318907 . T TG 21 PASS INDEL;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5493;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104318955 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104318979 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9518;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104319006 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8414;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104319048 . AT A 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4063;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104319201 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0025;AVGPOST=0.9971;RSQ=0.6455;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104319256 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5576;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104319308 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.930;LDAF=0.0141;AVGPOST=0.9974;RSQ=0.9331;ERATE=0.0004;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104319324 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.2458;AVGPOST=0.9989;RSQ=0.9975;ERATE=0.0005;THETA=0.0004;AC=537;AN=2184 GT:DS:GL:BD 0.24587911 0 1 104319489 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.911;LDAF=0.0110;AVGPOST=0.9980;RSQ=0.9258;ERATE=0.0003;THETA=0.0002;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104319630 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7890;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104319704 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0061;AVGPOST=0.9995;RSQ=0.9610;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104319768 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0092;AVGPOST=0.9998;RSQ=0.9904;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104319769 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0085;AVGPOST=0.9994;RSQ=0.9683;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104319780 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6644;AVGPOST=0.9995;RSQ=0.9991;ERATE=0.0003;THETA=0.0004;AC=1451;AN=2184 GT:DS:GL:BD 0.66437727 1 1 104319905 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.9222;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104320017 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.986;LDAF=0.1437;AVGPOST=0.9952;RSQ=0.9851;ERATE=0.0003;THETA=0.0004;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 104320101 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9358;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104320201 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.941;LDAF=0.0053;AVGPOST=0.9986;RSQ=0.9099;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104320249 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5712;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104320314 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0255;AVGPOST=0.9991;RSQ=0.9845;ERATE=0.0004;THETA=0.0005;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 104320368 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.960;LDAF=0.4456;AVGPOST=0.9815;RSQ=0.9734;ERATE=0.0010;THETA=0.0003;AC=973;AN=2184 GT:DS:GL:BD 0.44551283 0 1 104320463 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0265;AVGPOST=0.9930;RSQ=0.9067;ERATE=0.0004;THETA=0.0002;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 104320466 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.956;LDAF=0.4368;AVGPOST=0.9878;RSQ=0.9814;ERATE=0.0013;THETA=0.0032;AC=956;AN=2184 GT:DS:GL:BD 0.43772894 0 1 104320467 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.490;LDAF=0.0060;AVGPOST=0.9905;RSQ=0.3738;ERATE=0.0010;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104320535 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.970;LDAF=0.2519;AVGPOST=0.9937;RSQ=0.9870;ERATE=0.0009;THETA=0.0004;AC=548;AN=2184 GT:DS:GL:BD 0.25091577 0 1 104320536 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0211;AVGPOST=0.9955;RSQ=0.9166;ERATE=0.0008;THETA=0.0004;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 104320544 rs35806755 C CA 20360 PASS INDEL;BAVGPOST=0.972;BRSQ=0.957;LDAF=0.4557;AVGPOST=0.9663;RSQ=0.9459;ERATE=0.0069;THETA=0.0019;AC=998;AN=2184 GT:DS:GL:BD 0.45695969 0 1 104320593 . AG A 830 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0063;AVGPOST=0.9992;RSQ=0.9486;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104320614 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6474;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104320623 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8639;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104320668 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0076;AVGPOST=0.9995;RSQ=0.9691;ERATE=0.0004;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104320697 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.951;BRSQ=0.906;LDAF=0.6891;AVGPOST=0.9354;RSQ=0.8904;ERATE=0.0091;THETA=0.0005;AC=1542;AN=2184 GT:DS:GL:BD 0.70604396 1 1 104320885 . A AT 7885 PASS INDEL;BAVGPOST=0.953;BRSQ=0.878;LDAF=0.2007;AVGPOST=0.9532;RSQ=0.9006;ERATE=0.0045;THETA=0.0002;AC=446;AN=2184 GT:DS:GL:BD 0.20421246 0 1 104320906 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0066;AVGPOST=0.9994;RSQ=0.9539;ERATE=0.0004;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104320937 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0125;AVGPOST=0.9996;RSQ=0.9870;ERATE=0.0003;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104321078 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0039;AVGPOST=0.9991;RSQ=0.9036;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104321212 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0054;AVGPOST=0.9989;RSQ=0.9070;ERATE=0.0004;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104321218 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.6779;AVGPOST=0.9964;RSQ=0.9947;ERATE=0.0003;THETA=0.0003;AC=1478;AN=2184 GT:DS:GL:BD 0.67673993 1 1 104321343 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0374;AVGPOST=0.9996;RSQ=0.9956;ERATE=0.0003;THETA=0.0004;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 104321428 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7317;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104321458 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0035;AVGPOST=0.9992;RSQ=0.8880;ERATE=0.0006;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104321632 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0124;AVGPOST=0.9992;RSQ=0.9763;ERATE=0.0003;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104321682 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6465;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104321713 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4487;AVGPOST=0.9988;RSQ=0.9980;ERATE=0.0005;THETA=0.0005;AC=979;AN=2184 GT:DS:GL:BD 0.44826007 0 1 104321772 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.6408;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104321829 . TA T 70 PASS INDEL;BAVGPOST=0.999;BRSQ=0.518;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4808;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104322055 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0071;AVGPOST=0.9989;RSQ=0.9395;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104322073 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2122;AVGPOST=0.9983;RSQ=0.9959;ERATE=0.0006;THETA=0.0004;AC=464;AN=2184 GT:DS:GL:BD 0.21245421 0 1 104322135 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8877;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104322182 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104322307 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.916;LDAF=0.0141;AVGPOST=0.9980;RSQ=0.9405;ERATE=0.0005;THETA=0.0012;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104322317 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0048;AVGPOST=0.9973;RSQ=0.7495;ERATE=0.0008;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104322538 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104322651 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.9336;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104322781 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1421;AVGPOST=0.9975;RSQ=0.9928;ERATE=0.0004;THETA=0.0004;AC=310;AN=2184 GT:DS:GL:BD 0.14194140 0 1 104322940 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104322951 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0178;AVGPOST=0.9999;RSQ=0.9976;ERATE=0.0003;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 104322973 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104323042 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0037;AVGPOST=0.9984;RSQ=0.8323;ERATE=0.0004;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104323121 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9729;AVGPOST=0.9998;RSQ=0.9964;ERATE=0.0003;THETA=0.0003;AC=2125;AN=2184 GT:DS:GL:BD 0.97298533 1 1 104323154 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7284;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104323495 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7731;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104323535 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0082;AVGPOST=0.9991;RSQ=0.9571;ERATE=0.0005;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104323721 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0580;AVGPOST=0.9995;RSQ=0.9963;ERATE=0.0003;THETA=0.0005;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 104323869 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6839;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104323906 . GTA G 4580 PASS INDEL;BAVGPOST=0.997;BRSQ=0.952;LDAF=0.0311;AVGPOST=0.9955;RSQ=0.9499;ERATE=0.0004;THETA=0.0004;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 104323987 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7512;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104324344 . T TG 2234 PASS INDEL;BAVGPOST=0.996;BRSQ=0.948;LDAF=0.0359;AVGPOST=0.9895;RSQ=0.8949;ERATE=0.0006;THETA=0.0008;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 104324372 . G GA 1205 PASS INDEL;BAVGPOST=0.873;BRSQ=0.480;LDAF=0.2055;AVGPOST=0.7923;RSQ=0.4447;ERATE=0.0487;THETA=0.0006;AC=294;AN=2184 GT:DS:GL:BD 0.13461539 0 1 104324373 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.663;LDAF=0.0128;AVGPOST=0.9936;RSQ=0.7870;ERATE=0.0010;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104324400 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5522;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104324409 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0584;AVGPOST=0.9984;RSQ=0.9891;ERATE=0.0004;THETA=0.0006;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 104324468 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.497;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.3332;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104324773 rs113259569 TAC T 6461 PASS INDEL;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0571;AVGPOST=0.9980;RSQ=0.9880;ERATE=0.0003;THETA=0.0007;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 104324868 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.712;LDAF=0.0032;AVGPOST=0.9958;RSQ=0.4996;ERATE=0.0005;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104325175 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.722;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104325260 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0027;AVGPOST=0.9975;RSQ=0.6239;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104325399 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.723;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8631;ERATE=0.0004;THETA=0.0062;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104325400 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8540;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104325613 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7741;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104325687 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.965;LDAF=0.6124;AVGPOST=0.9752;RSQ=0.9656;ERATE=0.0077;THETA=0.0009;AC=1337;AN=2184 GT:DS:GL:BD 0.61217946 1 1 104325691 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0094;AVGPOST=0.9964;RSQ=0.8585;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104325798 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6398;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104325805 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104325935 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8162;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104326054 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0035;AVGPOST=0.9997;RSQ=0.9701;ERATE=0.0007;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104326250 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0018;AVGPOST=0.9999;RSQ=0.9638;ERATE=0.0003;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104326291 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6707;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104326711 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0197;AVGPOST=0.9988;RSQ=0.9723;ERATE=0.0004;THETA=0.0030;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 104326724 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104326771 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104326780 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0023;AVGPOST=0.9966;RSQ=0.4907;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104326929 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1244;AVGPOST=0.9984;RSQ=0.9954;ERATE=0.0004;THETA=0.0004;AC=272;AN=2184 GT:DS:GL:BD 0.12454212 0 1 104327027 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104327182 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0576;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 104327292 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104327296 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104327352 rs3841631 CAGA C 3024 PASS INDEL;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0211;AVGPOST=0.9973;RSQ=0.9447;ERATE=0.0003;THETA=0.0006;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 104327428 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104327465 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104327489 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104327508 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104327536 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104327579 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104327729 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0293;AVGPOST=0.9985;RSQ=0.9847;ERATE=0.0003;THETA=0.0009;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 104327818 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5127;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104327938 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.3903;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104328110 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0668;AVGPOST=0.9961;RSQ=0.9748;ERATE=0.0005;THETA=0.0008;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 104328195 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0088;AVGPOST=0.9979;RSQ=0.9015;ERATE=0.0005;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104328231 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.825;LDAF=0.0074;AVGPOST=0.9961;RSQ=0.7846;ERATE=0.0006;THETA=0.0014;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104328403 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0039;AVGPOST=0.9996;RSQ=0.9508;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104328478 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104328746 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5658;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104328798 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.715;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104328879 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4926;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104328900 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.722;LDAF=0.0021;AVGPOST=0.9976;RSQ=0.5121;ERATE=0.0007;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104328923 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.762;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.3342;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104328991 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.535;LDAF=0.0052;AVGPOST=0.9937;RSQ=0.5077;ERATE=0.0007;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104329058 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0382;AVGPOST=0.9977;RSQ=0.9728;ERATE=0.0005;THETA=0.0003;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 104329060 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.878;LDAF=0.0118;AVGPOST=0.9966;RSQ=0.9038;ERATE=0.0005;THETA=0.0002;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104329087 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3626;AVGPOST=0.9978;RSQ=0.9962;ERATE=0.0005;THETA=0.0007;AC=794;AN=2184 GT:DS:GL:BD 0.36355311 0 1 104329203 . GCAC G 270 PASS INDEL;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104329411 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5880;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104329427 . TTG T 532 PASS INDEL;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0040;AVGPOST=0.9987;RSQ=0.8776;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104329431 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.4284;AVGPOST=0.9936;RSQ=0.9910;ERATE=0.0008;THETA=0.0003;AC=934;AN=2184 GT:DS:GL:BD 0.42765567 0 1 104329641 . AAACCCATGT A 165 PASS INDEL;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.7995;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104329648 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1193;AVGPOST=0.9995;RSQ=0.9978;ERATE=0.0003;THETA=0.0005;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 104330087 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0046;AVGPOST=0.9991;RSQ=0.9290;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104330194 rs76862246 G GT 16446 PASS INDEL;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1194;AVGPOST=0.9989;RSQ=0.9959;ERATE=0.0004;THETA=0.0003;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 104330199 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.923;LDAF=0.0030;AVGPOST=0.9982;RSQ=0.7740;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104330277 . C CT 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6075;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104330320 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.979;LDAF=0.0094;AVGPOST=0.9991;RSQ=0.9702;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104330408 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6362;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104330462 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7625;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104330467 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0133;AVGPOST=0.9999;RSQ=0.9970;ERATE=0.0004;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104330546 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9999;RSQ=0.9961;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104330814 . TG T 477 PASS INDEL;BAVGPOST=0.996;BRSQ=0.769;LDAF=0.0113;AVGPOST=0.9919;RSQ=0.7630;ERATE=0.0005;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104331074 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9649;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104331096 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104331155 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7872;AVGPOST=0.9973;RSQ=0.9937;ERATE=0.0005;THETA=0.0006;AC=1722;AN=2184 GT:DS:GL:BD 0.78846157 1 1 104331308 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.805;LDAF=0.0027;AVGPOST=0.9997;RSQ=0.9531;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104331484 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5068;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104331613 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5810;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104331621 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.7438;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104331623 . CAG C 383 PASS INDEL;BAVGPOST=0.999;BRSQ=0.763;LDAF=0.0028;AVGPOST=0.9986;RSQ=0.7893;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104331634 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0067;AVGPOST=0.9979;RSQ=0.9002;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104331650 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9997;RSQ=0.9820;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104331729 . C CCT 607 PASS INDEL;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0024;AVGPOST=0.9978;RSQ=0.6351;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104331909 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9998;RSQ=0.9819;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104332014 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104332260 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1192;AVGPOST=0.9994;RSQ=0.9975;ERATE=0.0004;THETA=0.0003;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 104332273 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104332308 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104332318 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0028;AVGPOST=0.9983;RSQ=0.7810;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104332339 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.7819;AVGPOST=0.9918;RSQ=0.9836;ERATE=0.0038;THETA=0.0003;AC=1712;AN=2184 GT:DS:GL:BD 0.78388280 1 1 104332344 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.766;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.8148;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104332464 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9821;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104332694 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6268;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104332726 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0261;AVGPOST=0.9998;RSQ=0.9967;ERATE=0.0003;THETA=0.0004;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 104332852 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.6552;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104332990 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.9745;AVGPOST=0.9992;RSQ=0.9868;ERATE=0.0003;THETA=0.0003;AC=2129;AN=2184 GT:DS:GL:BD 0.97481686 1 1 104333128 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0028;AVGPOST=0.9986;RSQ=0.7873;ERATE=0.0004;THETA=0.0044;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104333147 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.727;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4527;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104333227 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.742;LDAF=0.0026;AVGPOST=0.9977;RSQ=0.7074;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104333313 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0034;AVGPOST=0.9969;RSQ=0.6462;ERATE=0.0006;THETA=0.0025;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104333424 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1580;AVGPOST=0.9954;RSQ=0.9862;ERATE=0.0013;THETA=0.0003;AC=343;AN=2184 GT:DS:GL:BD 0.15705128 0 1 104333436 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3944;AVGPOST=0.9973;RSQ=0.9956;ERATE=0.0007;THETA=0.0005;AC=861;AN=2184 GT:DS:GL:BD 0.39423078 0 1 104333469 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1188;AVGPOST=0.9995;RSQ=0.9975;ERATE=0.0003;THETA=0.0002;AC=260;AN=2184 GT:DS:GL:BD 0.11904762 0 1 104333480 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104333530 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.9604;AVGPOST=0.9984;RSQ=0.9867;ERATE=0.0003;THETA=0.0004;AC=2098;AN=2184 GT:DS:GL:BD 0.96062273 1 1 104333576 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8587;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104333666 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0234;AVGPOST=0.9997;RSQ=0.9947;ERATE=0.0003;THETA=0.0004;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104333701 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104333742 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5892;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104333810 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104333842 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104333861 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5601;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104334027 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2266;AVGPOST=0.9981;RSQ=0.9963;ERATE=0.0003;THETA=0.0006;AC=494;AN=2184 GT:DS:GL:BD 0.22619048 0 1 104334081 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5369;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104334087 . T TC 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0037;AVGPOST=0.9971;RSQ=0.6632;ERATE=0.0006;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104334117 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104334129 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8078;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104334198 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4719;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104334323 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8829;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104334377 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2280;AVGPOST=0.9968;RSQ=0.9937;ERATE=0.0004;THETA=0.0005;AC=497;AN=2184 GT:DS:GL:BD 0.22756410 0 1 104334499 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.843;LDAF=0.0039;AVGPOST=0.9969;RSQ=0.7256;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104334558 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.966;LDAF=0.0685;AVGPOST=0.9985;RSQ=0.9900;ERATE=0.0003;THETA=0.0005;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 104334603 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.6982;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104334631 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2273;AVGPOST=0.9989;RSQ=0.9972;ERATE=0.0005;THETA=0.0004;AC=496;AN=2184 GT:DS:GL:BD 0.22710623 0 1 104334650 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0114;AVGPOST=0.9991;RSQ=0.9687;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104334766 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0730;AVGPOST=0.9992;RSQ=0.9949;ERATE=0.0004;THETA=0.0004;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 104335036 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.4954;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104335216 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0130;AVGPOST=0.9993;RSQ=0.9735;ERATE=0.0004;THETA=0.0007;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104335223 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.986;LDAF=0.2117;AVGPOST=0.9919;RSQ=0.9810;ERATE=0.0019;THETA=0.0003;AC=459;AN=2184 GT:DS:GL:BD 0.21016483 0 1 104335277 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9113;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104335325 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4741;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104335372 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1298;AVGPOST=0.9988;RSQ=0.9955;ERATE=0.0005;THETA=0.0002;AC=283;AN=2184 GT:DS:GL:BD 0.12957875 0 1 104335374 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.789;LDAF=0.0024;AVGPOST=0.9969;RSQ=0.5196;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104335448 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8381;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104335470 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0047;AVGPOST=0.9968;RSQ=0.7505;ERATE=0.0004;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104335486 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5148;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104335540 . T TA 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7320;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104335592 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.984;LDAF=0.2053;AVGPOST=0.9966;RSQ=0.9916;ERATE=0.0005;THETA=0.0020;AC=449;AN=2184 GT:DS:GL:BD 0.20558608 0 1 104335650 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.1318;AVGPOST=0.9979;RSQ=0.9934;ERATE=0.0005;THETA=0.0005;AC=289;AN=2184 GT:DS:GL:BD 0.13232601 0 1 104335669 . GA G 2000 PASS INDEL;BAVGPOST=0.996;BRSQ=0.907;LDAF=0.0223;AVGPOST=0.9977;RSQ=0.9592;ERATE=0.0005;THETA=0.0007;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 104335723 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0280;AVGPOST=0.9988;RSQ=0.9832;ERATE=0.0005;THETA=0.0004;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 104335756 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104335923 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7592;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104335988 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.2256;AVGPOST=0.9981;RSQ=0.9957;ERATE=0.0004;THETA=0.0004;AC=493;AN=2184 GT:DS:GL:BD 0.22573259 0 1 104336026 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0107;AVGPOST=0.9986;RSQ=0.9576;ERATE=0.0003;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104336213 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9557;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104336326 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0111;AVGPOST=0.9997;RSQ=0.9872;ERATE=0.0004;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104336330 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5611;AVGPOST=0.9974;RSQ=0.9956;ERATE=0.0004;THETA=0.0003;AC=1227;AN=2184 GT:DS:GL:BD 0.56181318 1 1 104336332 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6746;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104336344 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104336349 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0027;AVGPOST=0.9995;RSQ=0.9170;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104336385 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104336446 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0893;AVGPOST=0.9993;RSQ=0.9959;ERATE=0.0004;THETA=0.0007;AC=195;AN=2184 GT:DS:GL:BD 0.08928572 0 1 104336476 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4583;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104336483 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0047;AVGPOST=0.9995;RSQ=0.9480;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104336563 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0059;AVGPOST=0.9991;RSQ=0.9369;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104336634 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1303;AVGPOST=0.9995;RSQ=0.9983;ERATE=0.0003;THETA=0.0002;AC=285;AN=2184 GT:DS:GL:BD 0.13049451 0 1 104336685 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.722;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7443;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104336700 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.925;LDAF=0.0214;AVGPOST=0.9956;RSQ=0.9297;ERATE=0.0003;THETA=0.0002;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 104336713 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0728;AVGPOST=0.9995;RSQ=0.9968;ERATE=0.0003;THETA=0.0004;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 104336753 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0025;AVGPOST=0.9978;RSQ=0.6948;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104336851 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104337136 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4932;ERATE=0.0007;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104337261 . AAAAC A 94 PASS INDEL;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0025;AVGPOST=0.9966;RSQ=0.4538;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104337270 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6710;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104337398 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0937;AVGPOST=0.9924;RSQ=0.9644;ERATE=0.0008;THETA=0.0003;AC=204;AN=2184 GT:DS:GL:BD 0.09340660 0 1 104337454 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0083;AVGPOST=0.9948;RSQ=0.7653;ERATE=0.0003;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104337586 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0117;AVGPOST=0.9985;RSQ=0.9518;ERATE=0.0003;THETA=0.0002;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104337636 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.947;LDAF=0.5332;AVGPOST=0.9626;RSQ=0.9453;ERATE=0.0063;THETA=0.0003;AC=1182;AN=2184 GT:DS:GL:BD 0.54120880 1 1 104337711 . A AT 55 PASS INDEL;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.3966;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104337723 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.608;LDAF=0.0124;AVGPOST=0.9867;RSQ=0.5999;ERATE=0.0028;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104337736 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6392;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104337749 . ACT A 417 PASS INDEL;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8645;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104337889 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0105;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104337998 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104337999 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104338166 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0083;AVGPOST=0.9999;RSQ=0.9949;ERATE=0.0004;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104338191 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104338253 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104338266 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0128;AVGPOST=0.9999;RSQ=0.9965;ERATE=0.0008;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104338286 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9294;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104338361 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0886;AVGPOST=0.9997;RSQ=0.9986;ERATE=0.0003;THETA=0.0005;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 104338391 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0843;AVGPOST=0.9995;RSQ=0.9979;ERATE=0.0003;THETA=0.0004;AC=184;AN=2184 GT:DS:GL:BD 0.08424909 0 1 104338448 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0018;AVGPOST=0.9993;RSQ=0.8571;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104338558 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104338606 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0100;AVGPOST=0.9983;RSQ=0.9298;ERATE=0.0005;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104338806 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7741;ERATE=0.0006;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104338831 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7139;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104338887 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.798;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5353;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104338987 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2054;AVGPOST=0.9988;RSQ=0.9968;ERATE=0.0005;THETA=0.0002;AC=448;AN=2184 GT:DS:GL:BD 0.20512821 0 1 104339017 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0047;AVGPOST=0.9982;RSQ=0.8354;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104339048 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7102;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104339134 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0353;AVGPOST=0.9965;RSQ=0.9629;ERATE=0.0003;THETA=0.0007;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 104339401 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9548;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104339418 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0461;AVGPOST=0.9995;RSQ=0.9949;ERATE=0.0003;THETA=0.0004;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 104339489 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.877;LDAF=0.0127;AVGPOST=0.9959;RSQ=0.8598;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104339526 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=0.9999;RSQ=0.9934;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104339605 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7956;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104339697 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0036;AVGPOST=0.9995;RSQ=0.9490;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104339857 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.4859;AVGPOST=0.9989;RSQ=0.9983;ERATE=0.0003;THETA=0.0003;AC=1061;AN=2184 GT:DS:GL:BD 0.48580587 0 1 104339882 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8725;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104339977 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104339987 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0067;AVGPOST=0.9991;RSQ=0.9507;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104339988 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0041;AVGPOST=0.9977;RSQ=0.8285;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104339992 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0023;AVGPOST=0.9996;RSQ=0.9163;ERATE=0.0003;THETA=0.0001;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104340206 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0032;AVGPOST=0.9967;RSQ=0.6195;ERATE=0.0007;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104340291 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2049;AVGPOST=0.9980;RSQ=0.9948;ERATE=0.0008;THETA=0.0004;AC=446;AN=2184 GT:DS:GL:BD 0.20421246 0 1 104340350 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6343;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104340507 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.786;LDAF=0.0036;AVGPOST=0.9979;RSQ=0.7667;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104340520 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0139;AVGPOST=0.9997;RSQ=0.9889;ERATE=0.0003;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104340557 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0054;AVGPOST=0.9971;RSQ=0.8363;ERATE=0.0006;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104340558 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.3996;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104340644 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104340671 . C CA 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.743;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5677;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104340965 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0053;AVGPOST=0.9994;RSQ=0.9551;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104340996 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.916;LDAF=0.0140;AVGPOST=0.9966;RSQ=0.9123;ERATE=0.0003;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104341163 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.5908;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104341220 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1830;AVGPOST=0.9989;RSQ=0.9974;ERATE=0.0003;THETA=0.0001;AC=401;AN=2184 GT:DS:GL:BD 0.18360806 0 1 104341276 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0102;AVGPOST=0.9997;RSQ=0.9861;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104341290 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0406;AVGPOST=0.9994;RSQ=0.9939;ERATE=0.0003;THETA=0.0002;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 104341370 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.919;LDAF=0.0199;AVGPOST=0.9985;RSQ=0.9697;ERATE=0.0004;THETA=0.0003;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 104341385 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0010;AVGPOST=0.9986;RSQ=0.3646;ERATE=0.0006;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104341540 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2147;AVGPOST=0.9992;RSQ=0.9978;ERATE=0.0003;THETA=0.0004;AC=468;AN=2184 GT:DS:GL:BD 0.21428572 0 1 104341581 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0032;AVGPOST=0.9991;RSQ=0.8869;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104341891 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104341926 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.951;LDAF=0.0194;AVGPOST=0.9984;RSQ=0.9651;ERATE=0.0004;THETA=0.0004;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 104342081 . CG C 86 PASS INDEL;BAVGPOST=0.942;BRSQ=0.363;LDAF=0.0691;AVGPOST=0.9018;RSQ=0.3904;ERATE=0.0159;THETA=0.0002;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 104342083 rs35166306 T TA 11269 PASS INDEL;BAVGPOST=0.987;BRSQ=0.964;LDAF=0.2038;AVGPOST=0.9820;RSQ=0.9567;ERATE=0.0033;THETA=0.0004;AC=442;AN=2184 GT:DS:GL:BD 0.20238096 0 1 104342099 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.512;LDAF=0.0227;AVGPOST=0.9710;RSQ=0.4896;ERATE=0.0048;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104342100 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0109;AVGPOST=0.9983;RSQ=0.9307;ERATE=0.0004;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104342126 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.2147;AVGPOST=0.9984;RSQ=0.9958;ERATE=0.0005;THETA=0.0002;AC=468;AN=2184 GT:DS:GL:BD 0.21428572 0 1 104342132 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0038;AVGPOST=0.9995;RSQ=0.9430;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104342307 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9914;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104342346 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1712;AVGPOST=0.9990;RSQ=0.9977;ERATE=0.0004;THETA=0.0002;AC=375;AN=2184 GT:DS:GL:BD 0.17170329 0 1 104342487 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0061;AVGPOST=0.9994;RSQ=0.9573;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104342525 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6027;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104342699 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5494;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104342747 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=0.9998;RSQ=0.9913;ERATE=0.0003;THETA=0.0002;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104342765 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9703;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104342783 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0138;AVGPOST=0.9995;RSQ=0.9839;ERATE=0.0003;THETA=0.0002;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104342802 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9013;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104342835 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0224;AVGPOST=0.9999;RSQ=0.9981;ERATE=0.0003;THETA=0.0003;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 104343220 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2146;AVGPOST=0.9991;RSQ=0.9977;ERATE=0.0004;THETA=0.0004;AC=468;AN=2184 GT:DS:GL:BD 0.21428572 0 1 104343230 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2533;AVGPOST=0.9971;RSQ=0.9943;ERATE=0.0006;THETA=0.0002;AC=551;AN=2184 GT:DS:GL:BD 0.25228938 0 1 104343289 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0036;AVGPOST=0.9997;RSQ=0.9617;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104343290 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9976;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0003;THETA=0.0003;AC=2179;AN=2184 GT:DS:GL:BD 0.99771065 1 1 104343340 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104343391 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104343409 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1987;AVGPOST=0.9987;RSQ=0.9968;ERATE=0.0004;THETA=0.0001;AC=434;AN=2184 GT:DS:GL:BD 0.19871795 0 1 104343469 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2005;AVGPOST=0.9998;RSQ=0.9995;ERATE=0.0003;THETA=0.0003;AC=438;AN=2184 GT:DS:GL:BD 0.20054945 0 1 104343475 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7546;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104343497 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6695;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104343499 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1960;AVGPOST=0.9979;RSQ=0.9954;ERATE=0.0003;THETA=0.0002;AC=429;AN=2184 GT:DS:GL:BD 0.19642857 0 1 104343764 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104343805 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0031;AVGPOST=0.9994;RSQ=0.9084;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104343808 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.783;LDAF=0.0023;AVGPOST=0.9967;RSQ=0.4704;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104343818 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0028;AVGPOST=0.9993;RSQ=0.8808;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104343917 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0293;AVGPOST=0.9996;RSQ=0.9941;ERATE=0.0003;THETA=0.0014;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 104344016 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0184;AVGPOST=0.9998;RSQ=0.9943;ERATE=0.0003;THETA=0.0012;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 104344103 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0293;AVGPOST=0.9995;RSQ=0.9926;ERATE=0.0003;THETA=0.0013;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 104344212 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0183;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 104344279 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0359;AVGPOST=0.9989;RSQ=0.9885;ERATE=0.0003;THETA=0.0039;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 104344451 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104344466 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104344514 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104344586 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104344618 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0017;AVGPOST=0.9997;RSQ=0.9322;ERATE=0.0003;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104344653 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0078;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104344659 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104344709 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104344821 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0338;AVGPOST=0.9980;RSQ=0.9796;ERATE=0.0006;THETA=0.0010;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 104344885 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104344952 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0028;AVGPOST=0.9987;RSQ=0.8134;ERATE=0.0005;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104345092 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104345236 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7130;ERATE=0.0006;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104345539 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5436;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104345823 rs71975900 A AAAAG 4228 PASS INDEL;BAVGPOST=0.797;BRSQ=0.138;LDAF=0.7704;AVGPOST=0.6720;RSQ=0.2216;ERATE=0.0266;THETA=0.0044;AC=1965;AN=2184 GT:DS:GL:BD 0.89972526 1 1 104345867 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.939;LDAF=0.0216;AVGPOST=0.9947;RSQ=0.8937;ERATE=0.0006;THETA=0.0009;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 104345869 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.776;LDAF=0.0039;AVGPOST=0.9959;RSQ=0.5954;ERATE=0.0008;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104345871 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.727;LDAF=0.0027;AVGPOST=0.9990;RSQ=0.8257;ERATE=0.0005;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104345873 . G GAA 148 PASS INDEL;BAVGPOST=0.999;BRSQ=0.495;LDAF=0.0063;AVGPOST=0.9938;RSQ=0.5650;ERATE=0.0008;THETA=0.0016;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104345875 . GA G 31 PASS INDEL;BAVGPOST=0.999;BRSQ=0.561;LDAF=0.0045;AVGPOST=0.9944;RSQ=0.5372;ERATE=0.0006;THETA=0.0030;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104345887 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.752;LDAF=0.1268;AVGPOST=0.9471;RSQ=0.8149;ERATE=0.0038;THETA=0.0008;AC=260;AN=2184 GT:DS:GL:BD 0.11904762 0 1 104345898 rs72094487 AG A 477 PASS INDEL;BAVGPOST=0.931;BRSQ=0.371;LDAF=0.0897;AVGPOST=0.8854;RSQ=0.4492;ERATE=0.0100;THETA=0.0006;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 104345910 . AAG A 26939 PASS INDEL;BAVGPOST=0.918;BRSQ=0.462;LDAF=0.9060;AVGPOST=0.8997;RSQ=0.5227;ERATE=0.0081;THETA=0.0008;AC=2072;AN=2184 GT:DS:GL:BD 0.94871795 1 1 104345913 . AG A 5128 PASS INDEL;BAVGPOST=0.705;BRSQ=0.264;LDAF=0.6697;AVGPOST=0.6564;RSQ=0.3396;ERATE=0.0541;THETA=0.0010;AC=1689;AN=2184 GT:DS:GL:BD 0.77335167 1 1 104345914 rs5778142 G GAA 29366 PASS INDEL;BAVGPOST=0.918;BRSQ=0.463;LDAF=0.9164;AVGPOST=0.9212;RSQ=0.5794;ERATE=0.0058;THETA=0.0009;AC=2073;AN=2184 GT:DS:GL:BD 0.94917583 1 1 104345915 rs5778143 AG A 191 PASS INDEL;BAVGPOST=0.899;BRSQ=0.228;LDAF=0.1398;AVGPOST=0.7996;RSQ=0.3165;ERATE=0.0119;THETA=0.0010;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 104345920 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.854;BRSQ=0.631;LDAF=0.2926;AVGPOST=0.7986;RSQ=0.5862;ERATE=0.0702;THETA=0.0017;AC=510;AN=2184 GT:DS:GL:BD 0.23351648 0 1 104345928 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0118;AVGPOST=0.9906;RSQ=0.6668;ERATE=0.0008;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104345933 . AGAAG A 18181 PASS INDEL;BAVGPOST=0.841;BRSQ=0.720;LDAF=0.6154;AVGPOST=0.7907;RSQ=0.6865;ERATE=0.0500;THETA=0.0005;AC=1406;AN=2184 GT:DS:GL:BD 0.64377290 1 1 104345940 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6451;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104345992 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104346151 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0282;AVGPOST=0.9995;RSQ=0.9929;ERATE=0.0003;THETA=0.0005;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 104346198 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7466;ERATE=0.0014;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104346335 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104346404 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6710;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104346569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104346582 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.852;LDAF=0.0140;AVGPOST=0.9967;RSQ=0.8955;ERATE=0.0009;THETA=0.0010;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104346645 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7766;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104346696 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=0.9998;RSQ=0.9858;ERATE=0.0003;THETA=0.0014;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104346914 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0020;AVGPOST=0.9973;RSQ=0.5517;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104346984 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0052;AVGPOST=0.9993;RSQ=0.9389;ERATE=0.0003;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104347019 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.5488;ERATE=0.0005;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104347177 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104347270 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0017;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104347305 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0051;AVGPOST=0.9997;RSQ=0.9706;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104347349 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0089;AVGPOST=0.9984;RSQ=0.9218;ERATE=0.0003;THETA=0.0016;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104347450 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104347491 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104347497 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0063;AVGPOST=0.9986;RSQ=0.9233;ERATE=0.0003;THETA=0.0025;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104347549 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.840;LDAF=0.0082;AVGPOST=0.9974;RSQ=0.8715;ERATE=0.0010;THETA=0.0016;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104347587 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.7656;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104347594 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.801;LDAF=0.0035;AVGPOST=0.9980;RSQ=0.8196;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104347783 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6609;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104347880 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0185;AVGPOST=0.9995;RSQ=0.9884;ERATE=0.0004;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 104348012 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0054;AVGPOST=0.9984;RSQ=0.8801;ERATE=0.0004;THETA=0.0016;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104348016 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6295;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104348410 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7682;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104348467 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.985;LDAF=0.0639;AVGPOST=0.9977;RSQ=0.9843;ERATE=0.0004;THETA=0.0009;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 104348525 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104348531 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.735;LDAF=0.0118;AVGPOST=0.9943;RSQ=0.7893;ERATE=0.0010;THETA=0.0015;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104348604 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8359;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104348703 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104348727 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6759;AVGPOST=0.9967;RSQ=0.9954;ERATE=0.0005;THETA=0.0005;AC=1475;AN=2184 GT:DS:GL:BD 0.67536628 1 1 104348816 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104348903 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.745;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5892;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104348947 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0062;AVGPOST=0.9997;RSQ=0.9853;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104349134 rs35948100 T TG 21536 PASS INDEL;BAVGPOST=0.994;BRSQ=0.982;LDAF=0.2056;AVGPOST=0.9900;RSQ=0.9770;ERATE=0.0018;THETA=0.0005;AC=445;AN=2184 GT:DS:GL:BD 0.20375457 0 1 104349185 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0041;AVGPOST=1.0000;RSQ=0.9946;ERATE=0.0010;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104349206 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104349272 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0008;AVGPOST=0.9999;RSQ=0.9255;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104349275 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8338;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104349307 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0041;AVGPOST=0.9996;RSQ=0.9653;ERATE=0.0003;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104349371 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104349481 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7298;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104349503 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6586;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104349509 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104349525 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7343;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104349527 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0052;AVGPOST=0.9981;RSQ=0.8462;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104349660 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7946;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104349689 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.719;LDAF=0.0026;AVGPOST=0.9969;RSQ=0.4987;ERATE=0.0009;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104349737 . T TA 8802 PASS INDEL;BAVGPOST=0.934;BRSQ=0.814;LDAF=0.2265;AVGPOST=0.9143;RSQ=0.8126;ERATE=0.0127;THETA=0.0004;AC=479;AN=2184 GT:DS:GL:BD 0.21932234 0 1 104349772 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.896;LDAF=0.2162;AVGPOST=0.9911;RSQ=0.9776;ERATE=0.0010;THETA=0.0006;AC=476;AN=2184 GT:DS:GL:BD 0.21794872 0 1 104349821 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1872;AVGPOST=0.9977;RSQ=0.9937;ERATE=0.0005;THETA=0.0004;AC=407;AN=2184 GT:DS:GL:BD 0.18635531 0 1 104349982 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0009;AVGPOST=0.9987;RSQ=0.3805;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104350055 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.866;BRSQ=0.397;LDAF=0.1524;AVGPOST=0.8281;RSQ=0.4618;ERATE=0.0264;THETA=0.0018;AC=174;AN=2184 GT:DS:GL:BD 0.07967033 0 1 104350193 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.680;LDAF=0.0021;AVGPOST=0.9977;RSQ=0.5281;ERATE=0.0006;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104350255 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0027;AVGPOST=0.9986;RSQ=0.7914;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104350403 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104350486 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0045;AVGPOST=0.9984;RSQ=0.8608;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104350496 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1892;AVGPOST=0.9970;RSQ=0.9927;ERATE=0.0005;THETA=0.0004;AC=411;AN=2184 GT:DS:GL:BD 0.18818681 0 1 104350525 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0013;AVGPOST=0.9997;RSQ=0.9087;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104350540 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0083;AVGPOST=0.9979;RSQ=0.9026;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104350644 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.535;LDAF=0.0022;AVGPOST=0.9974;RSQ=0.5491;ERATE=0.0007;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104350726 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.657;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4845;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104350758 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.763;LDAF=0.0043;AVGPOST=0.9972;RSQ=0.7345;ERATE=0.0007;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104350808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0149;AVGPOST=0.9958;RSQ=0.8840;ERATE=0.0004;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104350958 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.536;LDAF=0.0051;AVGPOST=0.9926;RSQ=0.4798;ERATE=0.0010;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104350994 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0189;AVGPOST=0.9978;RSQ=0.9490;ERATE=0.0007;THETA=0.0008;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 104351076 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.815;LDAF=0.0189;AVGPOST=0.9925;RSQ=0.8559;ERATE=0.0008;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104351164 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.621;LDAF=0.0101;AVGPOST=0.9876;RSQ=0.5333;ERATE=0.0008;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104351222 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.543;LDAF=0.0143;AVGPOST=0.9823;RSQ=0.5055;ERATE=0.0009;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104351229 rs71667496 A AC 1015 PASS INDEL;BAVGPOST=0.991;BRSQ=0.669;LDAF=0.0145;AVGPOST=0.9935;RSQ=0.8355;ERATE=0.0006;THETA=0.0008;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104351282 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.972;LDAF=0.0261;AVGPOST=0.9961;RSQ=0.9422;ERATE=0.0003;THETA=0.0014;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 104351476 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8519;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104351650 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0116;AVGPOST=0.9997;RSQ=0.9885;ERATE=0.0004;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104351829 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2180;AVGPOST=0.9985;RSQ=0.9966;ERATE=0.0004;THETA=0.0009;AC=478;AN=2184 GT:DS:GL:BD 0.21886447 0 1 104351832 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9824;ERATE=0.0004;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104351956 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.584;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5634;ERATE=0.0004;THETA=0.0162;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104352534 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.810;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6781;ERATE=0.0005;THETA=0.0057;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104352908 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.728;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5417;ERATE=0.0004;THETA=0.0055;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104352930 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.960;LDAF=0.0848;AVGPOST=0.9904;RSQ=0.9543;ERATE=0.0005;THETA=0.0011;AC=187;AN=2184 GT:DS:GL:BD 0.08562271 0 1 104353041 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3629;AVGPOST=0.9966;RSQ=0.9944;ERATE=0.0006;THETA=0.0003;AC=793;AN=2184 GT:DS:GL:BD 0.36309522 0 1 104353078 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.719;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.6983;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104353246 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3662;AVGPOST=0.9927;RSQ=0.9891;ERATE=0.0009;THETA=0.0007;AC=799;AN=2184 GT:DS:GL:BD 0.36584249 0 1 104353309 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0136;AVGPOST=0.9992;RSQ=0.9706;ERATE=0.0004;THETA=0.0006;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104353355 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104353398 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9602;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104353439 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.740;LDAF=0.0103;AVGPOST=0.9965;RSQ=0.8570;ERATE=0.0007;THETA=0.0031;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104353466 rs71696431 T TAA 782 PASS INDEL;BAVGPOST=0.618;BRSQ=0.132;LDAF=0.3312;AVGPOST=0.6195;RSQ=0.2509;ERATE=0.0550;THETA=0.0002;AC=428;AN=2184 GT:DS:GL:BD 0.19597070 0 1 104353568 rs56057603 G GA 6058 PASS INDEL;BAVGPOST=0.660;BRSQ=0.353;LDAF=0.4331;AVGPOST=0.6604;RSQ=0.4174;ERATE=0.0555;THETA=0.0004;AC=792;AN=2184 GT:DS:GL:BD 0.36263737 0 1 104353602 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0147;AVGPOST=0.9980;RSQ=0.9519;ERATE=0.0004;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104353661 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.8026;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104353773 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9436;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104353823 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.7991;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104353853 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6622;AVGPOST=0.9994;RSQ=0.9987;ERATE=0.0004;THETA=0.0005;AC=1446;AN=2184 GT:DS:GL:BD 0.66208792 1 1 104354033 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5541;AVGPOST=0.9993;RSQ=0.9991;ERATE=0.0003;THETA=0.0003;AC=1210;AN=2184 GT:DS:GL:BD 0.55402929 1 1 104354076 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0169;AVGPOST=0.9999;RSQ=0.9962;ERATE=0.0003;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104354115 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6904;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104354131 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6623;AVGPOST=0.9998;RSQ=0.9995;ERATE=0.0003;THETA=0.0005;AC=1446;AN=2184 GT:DS:GL:BD 0.66208792 1 1 104354180 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6623;AVGPOST=0.9996;RSQ=0.9993;ERATE=0.0003;THETA=0.0003;AC=1446;AN=2184 GT:DS:GL:BD 0.66208792 1 1 104354326 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0499;AVGPOST=0.9998;RSQ=0.9984;ERATE=0.0003;THETA=0.0005;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 104354371 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4092;AVGPOST=0.9991;RSQ=0.9987;ERATE=0.0003;THETA=0.0004;AC=893;AN=2184 GT:DS:GL:BD 0.40888280 0 1 104354382 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.917;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9890;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104354476 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6596;AVGPOST=0.9952;RSQ=0.9924;ERATE=0.0006;THETA=0.0002;AC=1442;AN=2184 GT:DS:GL:BD 0.66025639 1 1 104354633 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0090;AVGPOST=0.9975;RSQ=0.8751;ERATE=0.0005;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104354636 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6620;AVGPOST=0.9990;RSQ=0.9981;ERATE=0.0005;THETA=0.0002;AC=1446;AN=2184 GT:DS:GL:BD 0.66208792 1 1 104354677 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.874;LDAF=0.0090;AVGPOST=0.9973;RSQ=0.8877;ERATE=0.0003;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104354697 . GA G 80 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8173;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104354718 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.783;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8525;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104354805 . TG T 1805 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0154;AVGPOST=0.9985;RSQ=0.9680;ERATE=0.0003;THETA=0.0002;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104354950 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6622;AVGPOST=0.9997;RSQ=0.9994;ERATE=0.0003;THETA=0.0004;AC=1446;AN=2184 GT:DS:GL:BD 0.66208792 1 1 104354972 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6624;AVGPOST=0.9994;RSQ=0.9987;ERATE=0.0003;THETA=0.0003;AC=1446;AN=2184 GT:DS:GL:BD 0.66208792 1 1 104355001 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4105;AVGPOST=0.9985;RSQ=0.9979;ERATE=0.0004;THETA=0.0006;AC=895;AN=2184 GT:DS:GL:BD 0.40979853 0 1 104355157 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0098;AVGPOST=0.9994;RSQ=0.9746;ERATE=0.0004;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104355165 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8858;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104355252 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6996;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104355268 . T TG 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5293;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104355314 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6627;AVGPOST=0.9992;RSQ=0.9984;ERATE=0.0004;THETA=0.0004;AC=1447;AN=2184 GT:DS:GL:BD 0.66254580 1 1 104355458 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.6620;AVGPOST=0.9991;RSQ=0.9982;ERATE=0.0004;THETA=0.0007;AC=1446;AN=2184 GT:DS:GL:BD 0.66208792 1 1 104355593 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4423;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104355634 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0276;AVGPOST=0.9992;RSQ=0.9887;ERATE=0.0004;THETA=0.0004;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 104355718 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6614;AVGPOST=0.9978;RSQ=0.9957;ERATE=0.0005;THETA=0.0004;AC=1446;AN=2184 GT:DS:GL:BD 0.66208792 1 1 104355753 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0099;AVGPOST=0.9992;RSQ=0.9653;ERATE=0.0004;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104355837 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5647;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104355845 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0427;AVGPOST=0.9994;RSQ=0.9927;ERATE=0.0003;THETA=0.0003;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 104355848 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0489;AVGPOST=0.9999;RSQ=0.9992;ERATE=0.0003;THETA=0.0003;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 104355861 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0015;AVGPOST=0.9991;RSQ=0.7477;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104355925 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0151;AVGPOST=0.9983;RSQ=0.9622;ERATE=0.0004;THETA=0.0006;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 104356061 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0144;AVGPOST=0.9990;RSQ=0.9750;ERATE=0.0003;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104356062 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6653;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104356157 . C CA 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104356182 . AC A 12264 PASS INDEL;BAVGPOST=0.936;BRSQ=0.889;LDAF=0.5867;AVGPOST=0.9059;RSQ=0.8574;ERATE=0.0180;THETA=0.0007;AC=1318;AN=2184 GT:DS:GL:BD 0.60347986 1 1 104356208 rs60254187 CA C 64449 PASS INDEL;BAVGPOST=0.984;BRSQ=0.968;LDAF=0.6410;AVGPOST=0.9868;RSQ=0.9797;ERATE=0.0006;THETA=0.0002;AC=1405;AN=2184 GT:DS:GL:BD 0.64331502 1 1 104356211 . AT A 6144 PASS INDEL;BAVGPOST=0.920;BRSQ=0.863;LDAF=0.5637;AVGPOST=0.8865;RSQ=0.8383;ERATE=0.0256;THETA=0.0010;AC=1282;AN=2184 GT:DS:GL:BD 0.58699632 1 1 104356213 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5326;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104356311 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9940;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104356345 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104356352 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104356466 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0147;AVGPOST=0.9997;RSQ=0.9900;ERATE=0.0003;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104356532 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2509;AVGPOST=0.9980;RSQ=0.9956;ERATE=0.0003;THETA=0.0006;AC=547;AN=2184 GT:DS:GL:BD 0.25045788 0 1 104356629 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104356821 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.850;LDAF=0.0064;AVGPOST=0.9977;RSQ=0.8435;ERATE=0.0005;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104356875 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8543;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104356913 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1604;AVGPOST=0.9972;RSQ=0.9923;ERATE=0.0005;THETA=0.0006;AC=350;AN=2184 GT:DS:GL:BD 0.16025642 0 1 104356963 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4728;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104356990 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6514;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104357004 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0021;AVGPOST=0.9968;RSQ=0.4768;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104357013 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4843;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104357110 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9034;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104357152 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0111;AVGPOST=0.9980;RSQ=0.9388;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104357154 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.820;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8950;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104357170 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.962;LDAF=0.0907;AVGPOST=0.9941;RSQ=0.9731;ERATE=0.0003;THETA=0.0006;AC=196;AN=2184 GT:DS:GL:BD 0.08974359 0 1 104357461 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9232;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104357573 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9558;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104357581 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9279;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104357658 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104357659 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7386;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104357716 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104357818 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5200;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104357834 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0027;AVGPOST=0.9999;RSQ=0.9841;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104357878 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7329;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104357879 . TGAC T 4361 PASS INDEL;BAVGPOST=0.984;BRSQ=0.945;LDAF=0.1548;AVGPOST=0.9906;RSQ=0.9738;ERATE=0.0009;THETA=0.0006;AC=343;AN=2184 GT:DS:GL:BD 0.15705128 0 1 104357894 rs67670247 GACA G 14936 PASS INDEL;BAVGPOST=0.988;BRSQ=0.968;LDAF=0.1611;AVGPOST=0.9925;RSQ=0.9804;ERATE=0.0005;THETA=0.0006;AC=354;AN=2184 GT:DS:GL:BD 0.16208792 0 1 104357895 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0028;AVGPOST=0.9984;RSQ=0.7851;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104357926 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1637;AVGPOST=0.9998;RSQ=0.9993;ERATE=0.0003;THETA=0.0002;AC=358;AN=2184 GT:DS:GL:BD 0.16391942 0 1 104357946 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6134;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104357965 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0059;AVGPOST=0.9982;RSQ=0.9134;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104357986 . TA T 288 PASS INDEL;BAVGPOST=0.998;BRSQ=0.821;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8483;ERATE=0.0003;THETA=0.0001;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104358045 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2125;AVGPOST=0.9979;RSQ=0.9954;ERATE=0.0004;THETA=0.0014;AC=463;AN=2184 GT:DS:GL:BD 0.21199633 0 1 104358126 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1644;AVGPOST=0.9981;RSQ=0.9952;ERATE=0.0004;THETA=0.0006;AC=358;AN=2184 GT:DS:GL:BD 0.16391942 0 1 104358143 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0147;AVGPOST=0.9998;RSQ=0.9944;ERATE=0.0003;THETA=0.0007;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104358202 . TG T 7550 PASS INDEL;BAVGPOST=0.995;BRSQ=0.983;LDAF=0.1645;AVGPOST=0.9959;RSQ=0.9890;ERATE=0.0007;THETA=0.0004;AC=362;AN=2184 GT:DS:GL:BD 0.16575092 0 1 104358326 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1632;AVGPOST=0.9989;RSQ=0.9967;ERATE=0.0003;THETA=0.0006;AC=357;AN=2184 GT:DS:GL:BD 0.16346154 0 1 104358414 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0150;AVGPOST=0.9992;RSQ=0.9816;ERATE=0.0004;THETA=0.0009;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104358493 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0073;AVGPOST=0.9998;RSQ=0.9883;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104358501 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0064;AVGPOST=0.9999;RSQ=0.9932;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104358625 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8827;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104358709 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1637;AVGPOST=0.9999;RSQ=0.9996;ERATE=0.0003;THETA=0.0003;AC=358;AN=2184 GT:DS:GL:BD 0.16391942 0 1 104358711 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.985;LDAF=0.1482;AVGPOST=0.9988;RSQ=0.9959;ERATE=0.0003;THETA=0.0005;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 104358834 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.838;LDAF=0.0126;AVGPOST=0.9973;RSQ=0.9108;ERATE=0.0005;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104358860 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.736;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7457;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104359248 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7819;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104359371 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4720;AVGPOST=0.9986;RSQ=0.9980;ERATE=0.0005;THETA=0.0003;AC=1033;AN=2184 GT:DS:GL:BD 0.47298536 0 1 104359435 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104359449 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.727;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7773;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104359478 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4733;AVGPOST=0.9989;RSQ=0.9984;ERATE=0.0004;THETA=0.0012;AC=1036;AN=2184 GT:DS:GL:BD 0.47435898 0 1 104359482 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0028;AVGPOST=1.0000;RSQ=0.9921;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104359580 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8051;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104359617 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.3669;AVGPOST=0.9970;RSQ=0.9952;ERATE=0.0007;THETA=0.0003;AC=802;AN=2184 GT:DS:GL:BD 0.36721611 0 1 104359789 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9242;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104359818 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=0.9999;RSQ=0.9916;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104359881 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104359968 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5945;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104360017 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0077;AVGPOST=0.9989;RSQ=0.9450;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104360090 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0677;AVGPOST=0.9993;RSQ=0.9950;ERATE=0.0004;THETA=0.0004;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 104360097 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0117;AVGPOST=0.9992;RSQ=0.9697;ERATE=0.0003;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104360175 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5834;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104360323 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5323;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104360367 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5955;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104360411 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9829;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104360413 . T TGG 163 PASS INDEL;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6151;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104360449 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0289;AVGPOST=0.9985;RSQ=0.9774;ERATE=0.0005;THETA=0.0008;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 104360611 . GA G 39 PASS INDEL;BAVGPOST=0.999;BRSQ=0.609;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4649;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104360664 . AAC A 94 PASS INDEL;BAVGPOST=0.993;BRSQ=0.624;LDAF=0.0169;AVGPOST=0.9805;RSQ=0.5146;ERATE=0.0055;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104360720 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4927;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104360755 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0355;AVGPOST=0.9992;RSQ=0.9904;ERATE=0.0004;THETA=0.0001;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 104360965 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0037;AVGPOST=0.9988;RSQ=0.8630;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104360971 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.995;LDAF=0.4732;AVGPOST=0.9962;RSQ=0.9939;ERATE=0.0005;THETA=0.0005;AC=1036;AN=2184 GT:DS:GL:BD 0.47435898 0 1 104361058 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9996;RSQ=0.9777;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104361237 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6753;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104361265 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0352;AVGPOST=0.9994;RSQ=0.9941;ERATE=0.0003;THETA=0.0004;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 104361271 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.1969;AVGPOST=0.9989;RSQ=0.9972;ERATE=0.0004;THETA=0.0004;AC=431;AN=2184 GT:DS:GL:BD 0.19734432 0 1 104361501 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5184;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104361534 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0032;AVGPOST=0.9991;RSQ=0.8873;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104361693 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6674;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104361696 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0289;AVGPOST=0.9989;RSQ=0.9829;ERATE=0.0003;THETA=0.0005;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 104361817 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0027;AVGPOST=0.9997;RSQ=0.9480;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104361991 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.735;LDAF=0.0071;AVGPOST=0.9933;RSQ=0.6594;ERATE=0.0004;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104362011 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.756;LDAF=0.0095;AVGPOST=0.9941;RSQ=0.7514;ERATE=0.0005;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104362067 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6656;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104362474 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0011;AVGPOST=0.9984;RSQ=0.3552;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104362536 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0057;AVGPOST=0.9996;RSQ=0.9693;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104362575 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104362642 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.765;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8940;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104362663 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.627;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4443;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104362819 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.588;LDAF=0.0021;AVGPOST=0.9981;RSQ=0.6320;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104362865 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8495;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104362914 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5354;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104363020 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.747;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104363106 . AG A 365 PASS INDEL;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0023;AVGPOST=0.9995;RSQ=0.9016;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104363109 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104363130 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0177;AVGPOST=0.9987;RSQ=0.9687;ERATE=0.0003;THETA=0.0005;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 104363135 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0021;AVGPOST=0.9982;RSQ=0.7086;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104363273 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7493;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104363422 . CAT C 280 PASS INDEL;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0025;AVGPOST=0.9988;RSQ=0.7452;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104363535 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4978;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104363606 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.976;LDAF=0.0573;AVGPOST=0.9951;RSQ=0.9688;ERATE=0.0004;THETA=0.0003;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 104363720 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7901;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104363780 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.5519;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104363793 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104363872 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1149;AVGPOST=0.9993;RSQ=0.9970;ERATE=0.0003;THETA=0.0005;AC=251;AN=2184 GT:DS:GL:BD 0.11492674 0 1 104363898 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0133;AVGPOST=0.9998;RSQ=0.9916;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104363899 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104363967 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0225;AVGPOST=0.9999;RSQ=0.9971;ERATE=0.0003;THETA=0.0003;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 104364024 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6250;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104364041 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104364046 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4905;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104364172 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5729;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104364212 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7102;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104364213 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.684;LDAF=0.0024;AVGPOST=0.9985;RSQ=0.7611;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104364257 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3744;AVGPOST=0.9972;RSQ=0.9954;ERATE=0.0005;THETA=0.0004;AC=817;AN=2184 GT:DS:GL:BD 0.37408423 0 1 104364339 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.5878;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104364341 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.994;LDAF=0.5938;AVGPOST=0.9950;RSQ=0.9930;ERATE=0.0009;THETA=0.0003;AC=1297;AN=2184 GT:DS:GL:BD 0.59386444 1 1 104364363 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7071;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104364480 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0539;AVGPOST=0.9999;RSQ=0.9992;ERATE=0.0003;THETA=0.0003;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 104364492 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104364609 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0900;AVGPOST=0.9985;RSQ=0.9923;ERATE=0.0004;THETA=0.0008;AC=197;AN=2184 GT:DS:GL:BD 0.09020147 0 1 104364626 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6900;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104364658 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0540;AVGPOST=0.9995;RSQ=0.9954;ERATE=0.0004;THETA=0.0003;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 104364664 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0540;AVGPOST=0.9997;RSQ=0.9973;ERATE=0.0003;THETA=0.0005;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 104364678 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104364719 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0061;AVGPOST=0.9984;RSQ=0.8869;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104364784 . GA G 23 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.7865;ERATE=0.0007;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104364810 . T TA 62 PASS INDEL;BAVGPOST=0.999;BRSQ=0.603;LDAF=0.0040;AVGPOST=0.9951;RSQ=0.4765;ERATE=0.0008;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104364862 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.843;LDAF=0.0060;AVGPOST=0.9972;RSQ=0.7885;ERATE=0.0009;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104364863 . T TC 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7052;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104364994 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9997;RSQ=0.9628;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104365047 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0199;AVGPOST=0.9983;RSQ=0.9603;ERATE=0.0005;THETA=0.0003;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 104365074 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4631;AVGPOST=0.9983;RSQ=0.9972;ERATE=0.0004;THETA=0.0003;AC=1012;AN=2184 GT:DS:GL:BD 0.46336997 0 1 104365086 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5932;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104365232 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9995;AVGPOST=0.9990;RSQ=0.1254;ERATE=0.0004;THETA=0.0004;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 104365306 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0036;AVGPOST=0.9985;RSQ=0.8240;ERATE=0.0009;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104365453 . G GA 79 PASS INDEL;BAVGPOST=0.988;BRSQ=0.543;LDAF=0.0226;AVGPOST=0.9690;RSQ=0.4493;ERATE=0.0061;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104365492 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.4701;AVGPOST=0.9969;RSQ=0.9959;ERATE=0.0004;THETA=0.0007;AC=1026;AN=2184 GT:DS:GL:BD 0.46978021 0 1 104365524 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.898;LDAF=0.0088;AVGPOST=0.9961;RSQ=0.8268;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104365641 . G GAATT 4549 PASS INDEL;BAVGPOST=0.996;BRSQ=0.900;LDAF=0.0278;AVGPOST=0.9951;RSQ=0.9261;ERATE=0.0007;THETA=0.0004;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 104365684 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6960;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104365732 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.649;LDAF=0.0025;AVGPOST=0.9968;RSQ=0.5084;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104365825 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.7299;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104365874 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.889;LDAF=0.0230;AVGPOST=0.9948;RSQ=0.9129;ERATE=0.0004;THETA=0.0005;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 104366029 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104366090 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9403;ERATE=0.0006;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104366144 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2116;AVGPOST=0.9984;RSQ=0.9963;ERATE=0.0004;THETA=0.0006;AC=461;AN=2184 GT:DS:GL:BD 0.21108058 0 1 104366150 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7728;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104366197 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4987;AVGPOST=0.9989;RSQ=0.9980;ERATE=0.0005;THETA=0.0003;AC=1090;AN=2184 GT:DS:GL:BD 0.49908423 0 1 104366303 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0019;AVGPOST=0.9975;RSQ=0.5198;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104366420 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0039;AVGPOST=0.9985;RSQ=0.8523;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104366475 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7239;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104366553 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.7036;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104366563 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.822;LDAF=0.9896;AVGPOST=0.9981;RSQ=0.9192;ERATE=0.0004;THETA=0.0004;AC=2163;AN=2184 GT:DS:GL:BD 0.99038464 1 1 104366684 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5906;AVGPOST=0.9977;RSQ=0.9971;ERATE=0.0004;THETA=0.0003;AC=1290;AN=2184 GT:DS:GL:BD 0.59065932 1 1 104366955 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104366968 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104367066 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.926;LDAF=0.0195;AVGPOST=0.9981;RSQ=0.9632;ERATE=0.0003;THETA=0.0005;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 104367235 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9063;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104367316 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9558;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104367694 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3181;AVGPOST=0.9980;RSQ=0.9964;ERATE=0.0004;THETA=0.0007;AC=693;AN=2184 GT:DS:GL:BD 0.31730768 0 1 104367732 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7561;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104367750 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2063;AVGPOST=0.9983;RSQ=0.9960;ERATE=0.0003;THETA=0.0002;AC=450;AN=2184 GT:DS:GL:BD 0.20604396 0 1 104367772 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.869;LDAF=0.0062;AVGPOST=0.9974;RSQ=0.8489;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104367797 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104367948 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8194;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104368021 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6213;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104368233 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9991;RSQ=0.9068;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104368246 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0048;AVGPOST=0.9992;RSQ=0.9335;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104368462 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4976;AVGPOST=0.9959;RSQ=0.9935;ERATE=0.0011;THETA=0.0003;AC=1085;AN=2184 GT:DS:GL:BD 0.49679488 0 1 104368470 . ATCT A 834 PASS INDEL;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0047;AVGPOST=0.9966;RSQ=0.7324;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104368641 . CATT C 75 PASS INDEL;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4947;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104368648 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.752;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5634;ERATE=0.0003;THETA=0.0105;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104368739 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0096;AVGPOST=0.9999;RSQ=0.9931;ERATE=0.0003;THETA=0.0067;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104368800 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7863;ERATE=0.0003;THETA=0.0063;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104368865 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.984;LDAF=0.9063;AVGPOST=0.9941;RSQ=0.9746;ERATE=0.0004;THETA=0.0023;AC=1984;AN=2184 GT:DS:GL:BD 0.90842491 1 1 104368983 . GAC G 99 PASS INDEL;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0090;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104369061 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0062;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104369109 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4880;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104369110 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.820;LDAF=0.0059;AVGPOST=0.9968;RSQ=0.7827;ERATE=0.0006;THETA=0.0040;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104369157 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.973;LDAF=0.0581;AVGPOST=0.9935;RSQ=0.9585;ERATE=0.0033;THETA=0.0022;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 104369179 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.557;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5805;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104369220 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0015;AVGPOST=0.9992;RSQ=0.7461;ERATE=0.0005;THETA=0.0074;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104369232 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0038;AVGPOST=0.9968;RSQ=0.6751;ERATE=0.0003;THETA=0.0047;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104369233 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0010;AVGPOST=0.9981;RSQ=0.2414;ERATE=0.0003;THETA=0.0015;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104369261 . AG A 64 PASS INDEL;BAVGPOST=0.999;BRSQ=0.594;LDAF=0.0021;AVGPOST=0.9965;RSQ=0.3408;ERATE=0.0005;THETA=0.0061;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104369280 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5826;ERATE=0.0004;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104369427 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0259;AVGPOST=0.9989;RSQ=0.9828;ERATE=0.0003;THETA=0.0077;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 104369436 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.0451;AVGPOST=0.9994;RSQ=0.9947;ERATE=0.0004;THETA=0.0020;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 104369455 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.896;LDAF=0.0478;AVGPOST=0.9894;RSQ=0.9112;ERATE=0.0011;THETA=0.0027;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 104369541 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.985;LDAF=0.8753;AVGPOST=0.9961;RSQ=0.9862;ERATE=0.0006;THETA=0.0008;AC=1916;AN=2184 GT:DS:GL:BD 0.87728935 1 1 104369647 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8790;AVGPOST=0.9975;RSQ=0.9922;ERATE=0.0005;THETA=0.0046;AC=1921;AN=2184 GT:DS:GL:BD 0.87957877 1 1 104369685 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104369704 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.670;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.5395;ERATE=0.0008;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104369712 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.9160;AVGPOST=0.9979;RSQ=0.9888;ERATE=0.0005;THETA=0.0051;AC=2004;AN=2184 GT:DS:GL:BD 0.91758239 1 1 104369754 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.8782;AVGPOST=0.9957;RSQ=0.9859;ERATE=0.0007;THETA=0.0028;AC=1923;AN=2184 GT:DS:GL:BD 0.88049453 1 1 104369835 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.844;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8646;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104369856 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8801;AVGPOST=0.9995;RSQ=0.9982;ERATE=0.0003;THETA=0.0065;AC=1924;AN=2184 GT:DS:GL:BD 0.88095236 1 1 104369892 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0328;AVGPOST=0.9984;RSQ=0.9832;ERATE=0.0003;THETA=0.0006;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 104370034 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0367;AVGPOST=0.9986;RSQ=0.9867;ERATE=0.0003;THETA=0.0033;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 104370061 rs35710716 CA C 7304 PASS INDEL;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0788;AVGPOST=0.9986;RSQ=0.9910;ERATE=0.0006;THETA=0.0005;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 104370101 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104370130 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8802;AVGPOST=0.9997;RSQ=0.9989;ERATE=0.0003;THETA=0.0008;AC=1924;AN=2184 GT:DS:GL:BD 0.88095236 1 1 104370138 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1271;AVGPOST=0.9996;RSQ=0.9985;ERATE=0.0003;THETA=0.0005;AC=278;AN=2184 GT:DS:GL:BD 0.12728938 0 1 104370176 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.1261;AVGPOST=0.9978;RSQ=0.9925;ERATE=0.0004;THETA=0.0004;AC=275;AN=2184 GT:DS:GL:BD 0.12591575 0 1 104370499 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8801;AVGPOST=0.9994;RSQ=0.9976;ERATE=0.0003;THETA=0.0007;AC=1924;AN=2184 GT:DS:GL:BD 0.88095236 1 1 104370616 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8117;ERATE=0.0003;THETA=0.0026;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104370626 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0066;AVGPOST=0.9996;RSQ=0.9756;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104370651 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.8803;AVGPOST=0.9995;RSQ=0.9980;ERATE=0.0004;THETA=0.0008;AC=1924;AN=2184 GT:DS:GL:BD 0.88095236 1 1 104370802 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9019;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104370925 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.8905;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104371141 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8958;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104371143 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104371187 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0022;AVGPOST=0.9998;RSQ=0.9539;ERATE=0.0003;THETA=0.0018;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104371192 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0134;AVGPOST=0.9982;RSQ=0.9462;ERATE=0.0006;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104371220 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104371243 rs111603719 TCAAA T 9192 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0395;AVGPOST=0.9984;RSQ=0.9855;ERATE=0.0004;THETA=0.0006;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 104371271 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6151;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104371286 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6245;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104371374 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0028;AVGPOST=0.9972;RSQ=0.5916;ERATE=0.0003;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104371441 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104371447 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104371537 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104371547 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0009;AVGPOST=0.9986;RSQ=0.5407;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104371746 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104371780 rs35582531 ACACC A 37014 PASS INDEL;BAVGPOST=0.846;BRSQ=0.478;LDAF=0.8101;AVGPOST=0.8177;RSQ=0.5549;ERATE=0.0224;THETA=0.0006;AC=1857;AN=2184 GT:DS:GL:BD 0.85027474 1 1 104371889 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.964;LDAF=0.1627;AVGPOST=0.9890;RSQ=0.9729;ERATE=0.0004;THETA=0.0002;AC=355;AN=2184 GT:DS:GL:BD 0.16254579 0 1 104371958 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4992;AVGPOST=0.9977;RSQ=0.9965;ERATE=0.0003;THETA=0.0006;AC=1093;AN=2184 GT:DS:GL:BD 0.50045788 1 1 104371970 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3814;AVGPOST=0.9973;RSQ=0.9958;ERATE=0.0005;THETA=0.0002;AC=831;AN=2184 GT:DS:GL:BD 0.38049451 0 1 104372234 . C CA 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.713;LDAF=0.0038;AVGPOST=0.9979;RSQ=0.7658;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104372342 . TAAAC T 174 PASS INDEL;BAVGPOST=0.999;BRSQ=0.691;LDAF=0.0030;AVGPOST=0.9981;RSQ=0.7311;ERATE=0.0005;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104372420 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104372483 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8787;AVGPOST=0.9957;RSQ=0.9863;ERATE=0.0007;THETA=0.0005;AC=1923;AN=2184 GT:DS:GL:BD 0.88049453 1 1 104372526 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.8988;AVGPOST=0.9994;RSQ=0.9969;ERATE=0.0004;THETA=0.0021;AC=1965;AN=2184 GT:DS:GL:BD 0.89972526 1 1 104372596 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6575;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104372643 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8801;AVGPOST=0.9997;RSQ=0.9989;ERATE=0.0003;THETA=0.0004;AC=1924;AN=2184 GT:DS:GL:BD 0.88095236 1 1 104372686 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.6436;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104372719 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104372792 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8427;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104372938 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.972;LDAF=0.1124;AVGPOST=0.9946;RSQ=0.9784;ERATE=0.0005;THETA=0.0002;AC=246;AN=2184 GT:DS:GL:BD 0.11263736 0 1 104372998 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6244;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104373045 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.855;LDAF=0.0026;AVGPOST=0.9992;RSQ=0.8527;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104373086 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.625;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6021;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104373155 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7750;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104373167 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.758;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104373198 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104373253 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7666;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104373255 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.986;LDAF=0.1268;AVGPOST=0.9980;RSQ=0.9932;ERATE=0.0003;THETA=0.0005;AC=277;AN=2184 GT:DS:GL:BD 0.12683150 0 1 104373315 rs57214758 TTTG T 8019 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0359;AVGPOST=0.9992;RSQ=0.9900;ERATE=0.0003;THETA=0.0005;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 104373367 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0019;AVGPOST=0.9993;RSQ=0.8544;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104373692 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8802;AVGPOST=0.9997;RSQ=0.9989;ERATE=0.0003;THETA=0.0002;AC=1924;AN=2184 GT:DS:GL:BD 0.88095236 1 1 104373722 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0088;AVGPOST=0.9992;RSQ=0.9627;ERATE=0.0003;THETA=0.0030;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104373749 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.8026;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104373766 . T TC 8 PASS INDEL;BAVGPOST=0.999;BRSQ=0.629;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5470;ERATE=0.0003;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104373790 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=0.9994;RSQ=0.9695;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104374017 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7014;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104374018 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1821;AVGPOST=0.9977;RSQ=0.9942;ERATE=0.0004;THETA=0.0004;AC=400;AN=2184 GT:DS:GL:BD 0.18315019 0 1 104374133 . A AC 7 PASS INDEL;BAVGPOST=0.999;BRSQ=0.583;LDAF=0.0016;AVGPOST=0.9980;RSQ=0.5316;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104374227 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7772;ERATE=0.0004;THETA=0.0044;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104374379 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.1383;AVGPOST=0.9957;RSQ=0.9881;ERATE=0.0004;THETA=0.0007;AC=304;AN=2184 GT:DS:GL:BD 0.13919415 0 1 104374489 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1195;AVGPOST=0.9975;RSQ=0.9914;ERATE=0.0004;THETA=0.0008;AC=260;AN=2184 GT:DS:GL:BD 0.11904762 0 1 104374513 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9996;RSQ=0.9770;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104374540 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2003;AVGPOST=0.9987;RSQ=0.9968;ERATE=0.0003;THETA=0.0004;AC=435;AN=2184 GT:DS:GL:BD 0.19917582 0 1 104374570 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104374675 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104374765 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7905;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104374766 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7345;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104374841 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0090;AVGPOST=0.9995;RSQ=0.9761;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104374998 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104375044 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0046;AVGPOST=0.9986;RSQ=0.8698;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104375111 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2082;AVGPOST=0.9992;RSQ=0.9981;ERATE=0.0003;THETA=0.0006;AC=453;AN=2184 GT:DS:GL:BD 0.20741758 0 1 104375138 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.850;LDAF=0.0095;AVGPOST=0.9963;RSQ=0.8402;ERATE=0.0003;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104375151 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2083;AVGPOST=0.9991;RSQ=0.9978;ERATE=0.0004;THETA=0.0002;AC=453;AN=2184 GT:DS:GL:BD 0.20741758 0 1 104375196 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5929;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104375214 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8573;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104375318 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7891;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104375374 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0423;AVGPOST=0.9990;RSQ=0.9897;ERATE=0.0003;THETA=0.0011;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 104375375 rs111341589 C CT 4724 PASS INDEL;BAVGPOST=0.995;BRSQ=0.941;LDAF=0.0520;AVGPOST=0.9781;RSQ=0.8287;ERATE=0.0052;THETA=0.0004;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 104375484 . T TC 64 PASS INDEL;BAVGPOST=0.992;BRSQ=0.619;LDAF=0.0097;AVGPOST=0.9947;RSQ=0.7905;ERATE=0.0007;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104375485 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0054;AVGPOST=0.9998;RSQ=0.9851;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104375616 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104375694 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104375719 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.955;LDAF=0.0203;AVGPOST=0.9957;RSQ=0.9255;ERATE=0.0004;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 104375759 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8940;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104375790 . GAT G 53 PASS INDEL;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5861;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104375799 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104375801 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0165;AVGPOST=0.9997;RSQ=0.9918;ERATE=0.0003;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 104375826 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8216;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104375972 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0088;AVGPOST=0.9998;RSQ=0.9874;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104375973 . T TA 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.5628;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104376150 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=0.9996;RSQ=0.9816;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104376333 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9875;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104376546 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2110;AVGPOST=0.9961;RSQ=0.9916;ERATE=0.0022;THETA=0.0004;AC=459;AN=2184 GT:DS:GL:BD 0.21016483 0 1 104376672 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104376714 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104376825 . CT C 1160 PASS INDEL;BAVGPOST=0.998;BRSQ=0.938;LDAF=0.0076;AVGPOST=0.9986;RSQ=0.9276;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104376862 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104377079 . C CT 127 PASS INDEL;BAVGPOST=0.996;BRSQ=0.550;LDAF=0.0087;AVGPOST=0.9893;RSQ=0.5351;ERATE=0.0029;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104377153 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0402;AVGPOST=0.9990;RSQ=0.9891;ERATE=0.0004;THETA=0.0005;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 104377175 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0029;AVGPOST=0.9988;RSQ=0.8293;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104377198 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0273;AVGPOST=0.9991;RSQ=0.9871;ERATE=0.0003;THETA=0.0004;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 104377304 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6927;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104377342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104377592 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=1.0000;RSQ=0.9960;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104377593 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104377773 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1480;AVGPOST=0.9995;RSQ=0.9981;ERATE=0.0003;THETA=0.0002;AC=322;AN=2184 GT:DS:GL:BD 0.14743590 0 1 104377876 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5963;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104377885 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1188;AVGPOST=0.9986;RSQ=0.9949;ERATE=0.0003;THETA=0.0004;AC=259;AN=2184 GT:DS:GL:BD 0.11858974 0 1 104378139 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0024;AVGPOST=0.9986;RSQ=0.7295;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104378155 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.760;LDAF=0.0022;AVGPOST=0.9973;RSQ=0.5244;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104378160 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.780;LDAF=0.0029;AVGPOST=0.9970;RSQ=0.6432;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104378296 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3422;AVGPOST=0.9977;RSQ=0.9965;ERATE=0.0004;THETA=0.0005;AC=745;AN=2184 GT:DS:GL:BD 0.34111720 0 1 104378326 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0170;AVGPOST=0.9987;RSQ=0.9743;ERATE=0.0003;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104378392 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104378526 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0078;AVGPOST=0.9999;RSQ=0.9925;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104378557 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3834;AVGPOST=0.9989;RSQ=0.9982;ERATE=0.0004;THETA=0.0003;AC=835;AN=2184 GT:DS:GL:BD 0.38232601 0 1 104378614 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8391;AVGPOST=1.0000;RSQ=0.9998;ERATE=0.0003;THETA=0.0002;AC=1832;AN=2184 GT:DS:GL:BD 0.83882785 1 1 104378676 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0233;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104378772 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104378789 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104378829 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104378830 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104378846 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0572;AVGPOST=1.0000;RSQ=0.9996;ERATE=0.0003;THETA=0.0002;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 104378848 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0138;AVGPOST=0.9998;RSQ=0.9948;ERATE=0.0003;THETA=0.0002;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104378851 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104378897 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0124;AVGPOST=0.9999;RSQ=0.9968;ERATE=0.0003;THETA=0.0002;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104378905 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104378911 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104379028 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0105;AVGPOST=1.0000;RSQ=0.9979;ERATE=0.0003;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104379061 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8387;AVGPOST=0.9993;RSQ=0.9978;ERATE=0.0006;THETA=0.0004;AC=1831;AN=2184 GT:DS:GL:BD 0.83836997 1 1 104379063 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1222;AVGPOST=0.9994;RSQ=0.9977;ERATE=0.0003;THETA=0.0005;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 104379259 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.2737;AVGPOST=0.9950;RSQ=0.9911;ERATE=0.0026;THETA=0.0009;AC=598;AN=2184 GT:DS:GL:BD 0.27380952 0 1 104379296 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104379440 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0183;AVGPOST=0.9999;RSQ=0.9966;ERATE=0.0003;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 104379450 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9562;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104379522 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104379525 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104379534 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1697;AVGPOST=0.9998;RSQ=0.9994;ERATE=0.0004;THETA=0.0004;AC=371;AN=2184 GT:DS:GL:BD 0.16987179 0 1 104379555 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2154;AVGPOST=0.9995;RSQ=0.9987;ERATE=0.0003;THETA=0.0003;AC=470;AN=2184 GT:DS:GL:BD 0.21520147 0 1 104379660 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0084;AVGPOST=0.9996;RSQ=0.9789;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104379804 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9389;ERATE=0.0003;THETA=0.0059;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104379821 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1741;AVGPOST=0.9965;RSQ=0.9903;ERATE=0.0008;THETA=0.0012;AC=380;AN=2184 GT:DS:GL:BD 0.17399268 0 1 104379864 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0039;AVGPOST=0.9968;RSQ=0.6685;ERATE=0.0010;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104379897 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.617;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.7823;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104380010 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0034;AVGPOST=0.9982;RSQ=0.7867;ERATE=0.0004;THETA=0.0027;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104380079 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2146;AVGPOST=0.9970;RSQ=0.9929;ERATE=0.0006;THETA=0.0011;AC=468;AN=2184 GT:DS:GL:BD 0.21428572 0 1 104380104 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0108;AVGPOST=0.9993;RSQ=0.9694;ERATE=0.0004;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104380148 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104380401 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5201;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104380473 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6915;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104380600 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104380807 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104380859 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104380876 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104380942 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104380953 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104381039 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0041;AVGPOST=0.9991;RSQ=0.9309;ERATE=0.0004;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104381170 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0233;AVGPOST=0.9998;RSQ=0.9954;ERATE=0.0003;THETA=0.0002;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104381193 . AG A 249 PASS INDEL;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7652;ERATE=0.0005;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104381220 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.875;LDAF=0.0143;AVGPOST=0.9943;RSQ=0.8392;ERATE=0.0012;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104381275 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.8154;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104381375 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1381;AVGPOST=0.9977;RSQ=0.9929;ERATE=0.0003;THETA=0.0008;AC=301;AN=2184 GT:DS:GL:BD 0.13782051 0 1 104381381 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104381442 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0124;AVGPOST=0.9994;RSQ=0.9813;ERATE=0.0003;THETA=0.0007;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104381455 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.9625;AVGPOST=0.9998;RSQ=0.9979;ERATE=0.0003;THETA=0.0032;AC=2102;AN=2184 GT:DS:GL:BD 0.96245420 1 1 104381491 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.850;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9385;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104381642 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7330;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104381651 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0065;AVGPOST=0.9998;RSQ=0.9851;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104381733 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0115;AVGPOST=0.9996;RSQ=0.9829;ERATE=0.0004;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104381745 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104381762 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104381791 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9666;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104381844 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104381868 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0031;AVGPOST=0.9988;RSQ=0.8520;ERATE=0.0005;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104381895 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0142;AVGPOST=1.0000;RSQ=0.9984;ERATE=0.0003;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 104381968 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.726;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6180;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104382029 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104382060 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.744;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4922;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104382175 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.771;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6371;ERATE=0.0004;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104382197 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.590;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5179;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104382202 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0024;AVGPOST=0.9986;RSQ=0.7450;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104382295 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.645;LDAF=0.0048;AVGPOST=0.9959;RSQ=0.6457;ERATE=0.0006;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104382332 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.966;LDAF=0.2519;AVGPOST=0.9875;RSQ=0.9761;ERATE=0.0006;THETA=0.0005;AC=547;AN=2184 GT:DS:GL:BD 0.25045788 0 1 104382374 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104382413 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1447;AVGPOST=0.9959;RSQ=0.9884;ERATE=0.0004;THETA=0.0038;AC=317;AN=2184 GT:DS:GL:BD 0.14514652 0 1 104382473 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.643;LDAF=0.0036;AVGPOST=0.9971;RSQ=0.6675;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104382529 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9635;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104382738 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7828;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104382778 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0328;AVGPOST=0.9992;RSQ=0.9908;ERATE=0.0003;THETA=0.0006;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 104382779 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5388;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104382786 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104382788 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0031;AVGPOST=0.9983;RSQ=0.7950;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104382939 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0311;AVGPOST=0.9999;RSQ=0.9981;ERATE=0.0003;THETA=0.0003;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 104382951 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0286;AVGPOST=0.9994;RSQ=0.9910;ERATE=0.0004;THETA=0.0006;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 104383060 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0644;AVGPOST=0.9967;RSQ=0.9807;ERATE=0.0004;THETA=0.0004;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 104383094 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0289;AVGPOST=0.9986;RSQ=0.9841;ERATE=0.0003;THETA=0.0011;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 104383240 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.958;LDAF=0.0199;AVGPOST=0.9989;RSQ=0.9779;ERATE=0.0004;THETA=0.0048;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 104383241 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6674;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104383381 . GC G 148 PASS INDEL;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6443;ERATE=0.0005;THETA=0.0051;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104383669 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1170;AVGPOST=0.9997;RSQ=0.9986;ERATE=0.0003;THETA=0.0004;AC=256;AN=2184 GT:DS:GL:BD 0.11721612 0 1 104384404 . TA T 385 PASS INDEL;BAVGPOST=0.992;BRSQ=0.814;LDAF=0.0250;AVGPOST=0.9934;RSQ=0.8883;ERATE=0.0006;THETA=0.0004;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 104384543 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1712;AVGPOST=0.9991;RSQ=0.9974;ERATE=0.0004;THETA=0.0004;AC=375;AN=2184 GT:DS:GL:BD 0.17170329 0 1 104384545 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0196;AVGPOST=0.9993;RSQ=0.9819;ERATE=0.0003;THETA=0.0008;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 104384547 . G GA 1126 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0191;AVGPOST=0.9997;RSQ=0.9918;ERATE=0.0003;THETA=0.0011;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 104384547 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104384578 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.751;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6323;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104384603 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5865;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104384669 . TAA T 481 PASS INDEL;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0045;AVGPOST=0.9988;RSQ=0.9091;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104384893 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104385024 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0101;AVGPOST=0.9999;RSQ=0.9956;ERATE=0.0003;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104385067 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9195;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104385147 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8315;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104385232 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0047;AVGPOST=0.9989;RSQ=0.9030;ERATE=0.0003;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104385380 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9594;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104385403 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5650;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104385409 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104385501 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.916;LDAF=0.0277;AVGPOST=0.9935;RSQ=0.9110;ERATE=0.0004;THETA=0.0009;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 104385529 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104385557 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9677;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104385602 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104385634 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9073;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104385690 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0195;AVGPOST=0.9994;RSQ=0.9865;ERATE=0.0003;THETA=0.0006;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 104385774 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104385801 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5496;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104385846 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7053;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104385937 . AC A 2909 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1161;AVGPOST=0.9957;RSQ=0.9851;ERATE=0.0005;THETA=0.0005;AC=255;AN=2184 GT:DS:GL:BD 0.11675824 0 1 104386021 . CA C 12743 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1161;AVGPOST=0.9968;RSQ=0.9893;ERATE=0.0004;THETA=0.0005;AC=255;AN=2184 GT:DS:GL:BD 0.11675824 0 1 104386022 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0193;AVGPOST=0.9999;RSQ=0.9965;ERATE=0.0003;THETA=0.0005;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 104386044 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0016;AVGPOST=0.9976;RSQ=0.5165;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104386045 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104386138 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104386158 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0063;AVGPOST=0.9997;RSQ=0.9850;ERATE=0.0003;THETA=0.0011;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104386235 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104386362 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0009;AVGPOST=0.9988;RSQ=0.4710;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104386386 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0167;AVGPOST=0.9990;RSQ=0.9770;ERATE=0.0003;THETA=0.0006;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104386448 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.6847;AVGPOST=0.9947;RSQ=0.9913;ERATE=0.0005;THETA=0.0005;AC=1496;AN=2184 GT:DS:GL:BD 0.68498170 1 1 104386455 . T TC 78 PASS INDEL;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6237;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104386502 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104386526 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104386550 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6978;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104386552 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104386572 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104386588 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104386608 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.898;LDAF=0.0198;AVGPOST=0.9952;RSQ=0.9117;ERATE=0.0004;THETA=0.0004;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 104386806 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.820;LDAF=0.0019;AVGPOST=0.9982;RSQ=0.6813;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104386933 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0193;AVGPOST=0.9998;RSQ=0.9954;ERATE=0.0003;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 104387000 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1098;AVGPOST=0.9984;RSQ=0.9944;ERATE=0.0003;THETA=0.0003;AC=239;AN=2184 GT:DS:GL:BD 0.10943224 0 1 104387014 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0029;AVGPOST=0.9994;RSQ=0.9069;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104387084 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.7644;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104387109 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1714;AVGPOST=0.9995;RSQ=0.9984;ERATE=0.0004;THETA=0.0005;AC=375;AN=2184 GT:DS:GL:BD 0.17170329 0 1 104387244 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.981;LDAF=0.1711;AVGPOST=0.9989;RSQ=0.9969;ERATE=0.0004;THETA=0.0003;AC=375;AN=2184 GT:DS:GL:BD 0.17170329 0 1 104387507 . GGAAA G 13218 PASS INDEL;BAVGPOST=0.994;BRSQ=0.977;LDAF=0.1168;AVGPOST=0.9993;RSQ=0.9969;ERATE=0.0003;THETA=0.0006;AC=256;AN=2184 GT:DS:GL:BD 0.11721612 0 1 104387517 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0032;AVGPOST=0.9989;RSQ=0.8597;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104387550 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.704;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.5783;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104387567 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7393;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104387675 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.7257;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104387689 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0021;AVGPOST=0.9991;RSQ=0.8173;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104387726 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104387736 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104387774 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6756;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104387888 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.8387;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104387999 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.982;LDAF=0.9204;AVGPOST=0.9954;RSQ=0.9768;ERATE=0.0005;THETA=0.0005;AC=2011;AN=2184 GT:DS:GL:BD 0.92078757 1 1 104388195 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0343;AVGPOST=0.9999;RSQ=0.9980;ERATE=0.0003;THETA=0.0005;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 104388717 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104388724 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8039;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104388763 rs35217391 AG A 4171 PASS INDEL;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0203;AVGPOST=0.9991;RSQ=0.9780;ERATE=0.0004;THETA=0.0003;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 104388823 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0058;AVGPOST=0.9995;RSQ=0.9643;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104388870 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1515;AVGPOST=0.9996;RSQ=0.9988;ERATE=0.0003;THETA=0.0005;AC=331;AN=2184 GT:DS:GL:BD 0.15155677 0 1 104388895 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=1.0000;RSQ=0.9973;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104389009 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0582;AVGPOST=0.9976;RSQ=0.9828;ERATE=0.0003;THETA=0.0004;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 104389079 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0023;AVGPOST=0.9998;RSQ=0.9537;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104389235 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0010;AVGPOST=0.9987;RSQ=0.5301;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104389253 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104389323 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4007;AVGPOST=0.9998;RSQ=0.9997;ERATE=0.0002;THETA=0.0004;AC=875;AN=2184 GT:DS:GL:BD 0.40064102 0 1 104389442 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104389443 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104389490 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0018;AVGPOST=1.0000;RSQ=0.9879;ERATE=0.0002;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104389505 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4194;AVGPOST=0.9998;RSQ=0.9997;ERATE=0.0002;THETA=0.0007;AC=916;AN=2184 GT:DS:GL:BD 0.41941392 0 1 104389539 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1073;AVGPOST=0.9997;RSQ=0.9992;ERATE=0.0002;THETA=0.0004;AC=234;AN=2184 GT:DS:GL:BD 0.10714286 0 1 104389546 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4194;AVGPOST=0.9998;RSQ=0.9997;ERATE=0.0002;THETA=0.0002;AC=916;AN=2184 GT:DS:GL:BD 0.41941392 0 1 104389562 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4139;AVGPOST=0.9997;RSQ=0.9996;ERATE=0.0002;THETA=0.0006;AC=904;AN=2184 GT:DS:GL:BD 0.41391942 0 1 104389645 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0418;AVGPOST=0.9996;RSQ=0.9954;ERATE=0.0003;THETA=0.0002;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 104389777 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2342;AVGPOST=0.9992;RSQ=0.9982;ERATE=0.0002;THETA=0.0004;AC=511;AN=2184 GT:DS:GL:BD 0.23397435 0 1 104389830 . A AT 987 PASS INDEL;BAVGPOST=0.936;BRSQ=0.834;LDAF=0.2416;AVGPOST=0.9271;RSQ=0.8474;ERATE=0.0135;THETA=0.0003;AC=532;AN=2184 GT:DS:GL:BD 0.24358974 0 1 104389989 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104390032 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8143;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104390045 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4494;AVGPOST=0.9992;RSQ=0.9988;ERATE=0.0004;THETA=0.0004;AC=981;AN=2184 GT:DS:GL:BD 0.44917583 0 1 104390055 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0085;AVGPOST=0.9995;RSQ=0.9777;ERATE=0.0002;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104390235 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2694;AVGPOST=0.9989;RSQ=0.9977;ERATE=0.0003;THETA=0.0003;AC=588;AN=2184 GT:DS:GL:BD 0.26923078 0 1 104390306 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2331;AVGPOST=0.9993;RSQ=0.9983;ERATE=0.0003;THETA=0.0002;AC=509;AN=2184 GT:DS:GL:BD 0.23305860 0 1 104390450 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.984;LDAF=0.2325;AVGPOST=0.9971;RSQ=0.9942;ERATE=0.0005;THETA=0.0004;AC=509;AN=2184 GT:DS:GL:BD 0.23305860 0 1 104390504 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0020;AVGPOST=0.9991;RSQ=0.9012;ERATE=0.0002;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104390550 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2342;AVGPOST=0.9990;RSQ=0.9977;ERATE=0.0004;THETA=0.0003;AC=511;AN=2184 GT:DS:GL:BD 0.23397435 0 1 104390554 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2354;AVGPOST=0.9974;RSQ=0.9951;ERATE=0.0006;THETA=0.0002;AC=513;AN=2184 GT:DS:GL:BD 0.23489010 0 1 104390604 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8538;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104390785 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7496;AVGPOST=0.9979;RSQ=0.9959;ERATE=0.0005;THETA=0.0002;AC=1638;AN=2184 GT:DS:GL:BD 0.75000000 1 1 104390911 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.801;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104390967 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4141;AVGPOST=0.9991;RSQ=0.9986;ERATE=0.0004;THETA=0.0011;AC=904;AN=2184 GT:DS:GL:BD 0.41391942 0 1 104391040 rs34414085 CT C 20881 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2357;AVGPOST=0.9968;RSQ=0.9935;ERATE=0.0005;THETA=0.0003;AC=511;AN=2184 GT:DS:GL:BD 0.23397435 0 1 104391118 . CT C 38 PASS INDEL;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0012;AVGPOST=0.9982;RSQ=0.4089;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104391169 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104391258 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6228;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104391458 . CT C 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6941;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104391459 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2361;AVGPOST=0.9958;RSQ=0.9914;ERATE=0.0006;THETA=0.0003;AC=513;AN=2184 GT:DS:GL:BD 0.23489010 0 1 104391580 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2697;AVGPOST=0.9994;RSQ=0.9986;ERATE=0.0004;THETA=0.0004;AC=588;AN=2184 GT:DS:GL:BD 0.26923078 0 1 104391628 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9783;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104391757 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0073;AVGPOST=0.9984;RSQ=0.9084;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104391807 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.7563;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104391894 . TG T 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6982;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104391973 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0028;AVGPOST=0.9996;RSQ=0.9416;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104392096 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2710;AVGPOST=0.9997;RSQ=0.9993;ERATE=0.0002;THETA=0.0004;AC=591;AN=2184 GT:DS:GL:BD 0.27060440 0 1 104392102 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0418;AVGPOST=0.9995;RSQ=0.9963;ERATE=0.0002;THETA=0.0003;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 104392152 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2711;AVGPOST=0.9991;RSQ=0.9978;ERATE=0.0004;THETA=0.0002;AC=591;AN=2184 GT:DS:GL:BD 0.27060440 0 1 104392336 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2353;AVGPOST=0.9987;RSQ=0.9970;ERATE=0.0003;THETA=0.0004;AC=512;AN=2184 GT:DS:GL:BD 0.23443224 0 1 104392364 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0352;AVGPOST=1.0000;RSQ=0.9994;ERATE=0.0002;THETA=0.0002;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 104392481 rs75422509 CTCTT C 41093 PASS INDEL;BAVGPOST=0.988;BRSQ=0.970;LDAF=0.2666;AVGPOST=0.9848;RSQ=0.9700;ERATE=0.0044;THETA=0.0005;AC=584;AN=2184 GT:DS:GL:BD 0.26739928 0 1 104392562 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9996;RSQ=0.9753;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104392656 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2697;AVGPOST=0.9996;RSQ=0.9990;ERATE=0.0003;THETA=0.0004;AC=588;AN=2184 GT:DS:GL:BD 0.26923078 0 1 104392693 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6827;AVGPOST=0.9981;RSQ=0.9971;ERATE=0.0003;THETA=0.0007;AC=1491;AN=2184 GT:DS:GL:BD 0.68269229 1 1 104392735 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.711;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104392779 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2698;AVGPOST=0.9997;RSQ=0.9992;ERATE=0.0003;THETA=0.0004;AC=588;AN=2184 GT:DS:GL:BD 0.26923078 0 1 104392815 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2697;AVGPOST=0.9995;RSQ=0.9989;ERATE=0.0004;THETA=0.0004;AC=588;AN=2184 GT:DS:GL:BD 0.26923078 0 1 104392871 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0037;AVGPOST=0.9988;RSQ=0.8838;ERATE=0.0002;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104392876 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0041;AVGPOST=0.9989;RSQ=0.8873;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104392921 . TC T 126 PASS INDEL;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0024;AVGPOST=0.9977;RSQ=0.5665;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104392993 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0352;AVGPOST=1.0000;RSQ=0.9994;ERATE=0.0002;THETA=0.0004;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 104393179 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4003;AVGPOST=0.9995;RSQ=0.9993;ERATE=0.0003;THETA=0.0002;AC=874;AN=2184 GT:DS:GL:BD 0.40018314 0 1 104393213 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6872;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104393244 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2700;AVGPOST=0.9992;RSQ=0.9981;ERATE=0.0004;THETA=0.0002;AC=589;AN=2184 GT:DS:GL:BD 0.26968864 0 1 104393314 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0064;AVGPOST=0.9973;RSQ=0.8647;ERATE=0.0004;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104393346 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=1.0000;RSQ=0.9963;ERATE=0.0002;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104393367 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104393454 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4818;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104393466 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.4006;AVGPOST=0.9990;RSQ=0.9984;ERATE=0.0002;THETA=0.0003;AC=874;AN=2184 GT:DS:GL:BD 0.40018314 0 1 104393497 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8820;ERATE=0.0005;THETA=0.0001;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104393523 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2343;AVGPOST=0.9992;RSQ=0.9982;ERATE=0.0004;THETA=0.0004;AC=511;AN=2184 GT:DS:GL:BD 0.23397435 0 1 104393618 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104393636 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7143;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104393692 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7417;ERATE=0.0002;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104393802 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0013;AVGPOST=0.9997;RSQ=0.9159;ERATE=0.0002;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104393807 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9302;ERATE=0.0002;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104393838 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104393897 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104393947 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2695;AVGPOST=0.9991;RSQ=0.9978;ERATE=0.0005;THETA=0.0003;AC=588;AN=2184 GT:DS:GL:BD 0.26923078 0 1 104393983 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7691;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104394003 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0416;AVGPOST=1.0000;RSQ=0.9995;ERATE=0.0002;THETA=0.0002;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 104394053 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.6077;ERATE=0.0003;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104394100 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0516;AVGPOST=0.9974;RSQ=0.9839;ERATE=0.0002;THETA=0.0003;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 104394140 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0353;AVGPOST=0.9998;RSQ=0.9975;ERATE=0.0003;THETA=0.0003;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 104394208 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.843;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8539;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104394222 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6340;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104394255 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104394287 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.0287;AVGPOST=0.9991;RSQ=0.9902;ERATE=0.0002;THETA=0.0003;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 104394288 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104394314 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2696;AVGPOST=0.9989;RSQ=0.9974;ERATE=0.0004;THETA=0.0002;AC=588;AN=2184 GT:DS:GL:BD 0.26923078 0 1 104394357 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.864;BRSQ=0.831;LDAF=0.5893;AVGPOST=0.9076;RSQ=0.9001;ERATE=0.0037;THETA=0.0003;AC=1290;AN=2184 GT:DS:GL:BD 0.59065932 1 1 104394435 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0016;AVGPOST=0.9980;RSQ=0.5694;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104394579 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2922;AVGPOST=0.9993;RSQ=0.9984;ERATE=0.0003;THETA=0.0007;AC=638;AN=2184 GT:DS:GL:BD 0.29212454 0 1 104394586 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5492;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104394685 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7121;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104394687 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7705;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104394901 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.957;LDAF=0.0967;AVGPOST=0.9941;RSQ=0.9745;ERATE=0.0005;THETA=0.0002;AC=211;AN=2184 GT:DS:GL:BD 0.09661172 0 1 104394904 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8838;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104394913 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8641;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104395019 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0054;AVGPOST=0.9995;RSQ=0.9632;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104395083 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1769;AVGPOST=0.9991;RSQ=0.9974;ERATE=0.0003;THETA=0.0003;AC=386;AN=2184 GT:DS:GL:BD 0.17673993 0 1 104395163 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104395164 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104395166 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6409;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104395201 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0031;AVGPOST=0.9982;RSQ=0.7665;ERATE=0.0005;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104395418 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8407;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104395471 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6409;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104395527 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.789;LDAF=0.0022;AVGPOST=0.9989;RSQ=0.7789;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104395749 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.6324;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104395914 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.741;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7529;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104395963 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5874;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104396109 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8702;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104396227 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7588;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104396232 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0034;AVGPOST=0.9986;RSQ=0.8537;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104396381 . TG T 34 PASS INDEL;BAVGPOST=1.000;BRSQ=0.670;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4619;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104396588 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.903;LDAF=0.0142;AVGPOST=0.9986;RSQ=0.9603;ERATE=0.0003;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 104396593 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104396655 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.856;LDAF=0.0031;AVGPOST=0.9992;RSQ=0.9097;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104396701 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2942;AVGPOST=0.9987;RSQ=0.9972;ERATE=0.0004;THETA=0.0003;AC=643;AN=2184 GT:DS:GL:BD 0.29441392 0 1 104396847 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2944;AVGPOST=0.9973;RSQ=0.9949;ERATE=0.0009;THETA=0.0004;AC=643;AN=2184 GT:DS:GL:BD 0.29441392 0 1 104396894 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.1154;AVGPOST=0.9979;RSQ=0.9922;ERATE=0.0005;THETA=0.0004;AC=252;AN=2184 GT:DS:GL:BD 0.11538462 0 1 104396948 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0803;AVGPOST=0.9996;RSQ=0.9983;ERATE=0.0003;THETA=0.0004;AC=176;AN=2184 GT:DS:GL:BD 0.08058608 0 1 104397072 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.6137;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104397287 . GGT G 40 PASS INDEL;BAVGPOST=0.992;BRSQ=0.629;LDAF=0.0074;AVGPOST=0.9930;RSQ=0.6107;ERATE=0.0014;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104397565 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.968;LDAF=0.0778;AVGPOST=0.9937;RSQ=0.9731;ERATE=0.0005;THETA=0.0006;AC=169;AN=2184 GT:DS:GL:BD 0.07738096 0 1 104397804 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9999;AVGPOST=0.9998;RSQ=0.0498;ERATE=0.0003;THETA=0.0004;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 104397816 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7913;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104397850 . AG A 302 PASS INDEL;BAVGPOST=0.994;BRSQ=0.687;LDAF=0.0076;AVGPOST=0.9950;RSQ=0.7732;ERATE=0.0004;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104397864 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0194;AVGPOST=0.9994;RSQ=0.9869;ERATE=0.0003;THETA=0.0005;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 104397887 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2845;AVGPOST=0.9976;RSQ=0.9951;ERATE=0.0005;THETA=0.0003;AC=621;AN=2184 GT:DS:GL:BD 0.28434065 0 1 104397896 . C CT 101 PASS INDEL;BAVGPOST=0.981;BRSQ=0.513;LDAF=0.0364;AVGPOST=0.9502;RSQ=0.4479;ERATE=0.0086;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 104397928 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9179;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104398053 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.4776;ERATE=0.0006;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104398318 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0783;AVGPOST=0.9995;RSQ=0.9972;ERATE=0.0003;THETA=0.0005;AC=171;AN=2184 GT:DS:GL:BD 0.07829671 0 1 104398478 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104398569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0226;AVGPOST=0.9996;RSQ=0.9920;ERATE=0.0004;THETA=0.0005;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 104398613 . C CT 89 PASS INDEL;BAVGPOST=0.979;BRSQ=0.512;LDAF=0.0449;AVGPOST=0.9435;RSQ=0.4738;ERATE=0.0115;THETA=0.0003;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 104398627 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.850;LDAF=0.0032;AVGPOST=0.9983;RSQ=0.7747;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104398688 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.950;BRSQ=0.919;LDAF=0.5088;AVGPOST=0.9828;RSQ=0.9744;ERATE=0.0024;THETA=0.0003;AC=1119;AN=2184 GT:DS:GL:BD 0.51236266 1 1 104398850 . AGTAT A 300 PASS INDEL;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0048;AVGPOST=0.9993;RSQ=0.9316;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104398944 . GTATC G 941 PASS INDEL;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0048;AVGPOST=0.9993;RSQ=0.9347;ERATE=0.0003;THETA=0.0010;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104398945 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.5774;ERATE=0.0005;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104398973 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6070;AVGPOST=0.9986;RSQ=0.9975;ERATE=0.0005;THETA=0.0004;AC=1325;AN=2184 GT:DS:GL:BD 0.60668498 1 1 104399036 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.6066;AVGPOST=0.9976;RSQ=0.9962;ERATE=0.0005;THETA=0.0003;AC=1325;AN=2184 GT:DS:GL:BD 0.60668498 1 1 104399151 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.1448;AVGPOST=0.9990;RSQ=0.9965;ERATE=0.0005;THETA=0.0003;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 104399178 . TTTTG T 268 PASS INDEL;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.8898;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104399181 . TA T 48 PASS INDEL;BAVGPOST=0.966;BRSQ=0.414;LDAF=0.0472;AVGPOST=0.9346;RSQ=0.4193;ERATE=0.0134;THETA=0.0005;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 104399207 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2943;AVGPOST=0.9966;RSQ=0.9928;ERATE=0.0007;THETA=0.0006;AC=643;AN=2184 GT:DS:GL:BD 0.29441392 0 1 104399323 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1200;AVGPOST=0.9985;RSQ=0.9940;ERATE=0.0003;THETA=0.0004;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 104399334 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2947;AVGPOST=0.9969;RSQ=0.9936;ERATE=0.0005;THETA=0.0004;AC=644;AN=2184 GT:DS:GL:BD 0.29487181 0 1 104399350 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2330;AVGPOST=0.9991;RSQ=0.9978;ERATE=0.0004;THETA=0.0004;AC=508;AN=2184 GT:DS:GL:BD 0.23260073 0 1 104399511 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.0784;AVGPOST=0.9991;RSQ=0.9951;ERATE=0.0005;THETA=0.0003;AC=171;AN=2184 GT:DS:GL:BD 0.07829671 0 1 104399544 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1726;AVGPOST=0.9982;RSQ=0.9944;ERATE=0.0004;THETA=0.0017;AC=377;AN=2184 GT:DS:GL:BD 0.17261904 0 1 104399615 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.722;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104399665 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.950;LDAF=0.1652;AVGPOST=0.9900;RSQ=0.9750;ERATE=0.0004;THETA=0.0012;AC=358;AN=2184 GT:DS:GL:BD 0.16391942 0 1 104399675 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0083;AVGPOST=0.9970;RSQ=0.8605;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104399730 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6810;ERATE=0.0002;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104399781 . AATTTAT A 446 PASS INDEL;BAVGPOST=0.998;BRSQ=0.815;LDAF=0.0059;AVGPOST=0.9972;RSQ=0.7808;ERATE=0.0005;THETA=0.0026;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104399876 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.698;LDAF=0.0037;AVGPOST=0.9977;RSQ=0.7715;ERATE=0.0004;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104399948 rs77678678 TA T 8611 PASS INDEL;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1639;AVGPOST=0.9957;RSQ=0.9868;ERATE=0.0004;THETA=0.0014;AC=359;AN=2184 GT:DS:GL:BD 0.16437729 0 1 104400052 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7178;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104400101 rs55951032 AT A 8761 PASS INDEL;BAVGPOST=0.994;BRSQ=0.978;LDAF=0.1577;AVGPOST=0.9984;RSQ=0.9948;ERATE=0.0006;THETA=0.0005;AC=345;AN=2184 GT:DS:GL:BD 0.15796703 0 1 104400189 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1642;AVGPOST=0.9990;RSQ=0.9968;ERATE=0.0003;THETA=0.0013;AC=359;AN=2184 GT:DS:GL:BD 0.16437729 0 1 104400283 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104400324 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5758;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104400432 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1036;AVGPOST=0.9983;RSQ=0.9919;ERATE=0.0003;THETA=0.0013;AC=226;AN=2184 GT:DS:GL:BD 0.10347985 0 1 104400494 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1579;AVGPOST=0.9976;RSQ=0.9920;ERATE=0.0006;THETA=0.0007;AC=345;AN=2184 GT:DS:GL:BD 0.15796703 0 1 104400502 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9351;ERATE=0.0002;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104400521 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1649;AVGPOST=0.9974;RSQ=0.9930;ERATE=0.0006;THETA=0.0006;AC=359;AN=2184 GT:DS:GL:BD 0.16437729 0 1 104400564 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.817;LDAF=0.0071;AVGPOST=0.9985;RSQ=0.9021;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104400611 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.9028;ERATE=0.0003;THETA=0.0019;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104400661 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0088;AVGPOST=0.9978;RSQ=0.9036;ERATE=0.0005;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104400697 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.973;LDAF=0.1164;AVGPOST=0.9962;RSQ=0.9854;ERATE=0.0004;THETA=0.0004;AC=254;AN=2184 GT:DS:GL:BD 0.11630037 0 1 104400757 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.862;BRSQ=0.391;LDAF=0.1698;AVGPOST=0.8753;RSQ=0.6525;ERATE=0.0067;THETA=0.0010;AC=309;AN=2184 GT:DS:GL:BD 0.14148352 0 1 104400822 . C CCCCCT 691 PASS INDEL;BAVGPOST=0.628;BRSQ=0.191;LDAF=0.3370;AVGPOST=0.7434;RSQ=0.5108;ERATE=0.0144;THETA=0.0017;AC=641;AN=2184 GT:DS:GL:BD 0.29349816 0 1 104400827 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.855;BRSQ=0.446;LDAF=0.1697;AVGPOST=0.8463;RSQ=0.5790;ERATE=0.0017;THETA=0.0011;AC=285;AN=2184 GT:DS:GL:BD 0.13049451 0 1 104400847 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.847;BRSQ=0.441;LDAF=0.1824;AVGPOST=0.8391;RSQ=0.5845;ERATE=0.0015;THETA=0.0009;AC=308;AN=2184 GT:DS:GL:BD 0.14102565 0 1 104400849 . CCCTTT C 306 PASS INDEL;BAVGPOST=0.875;BRSQ=0.223;LDAF=0.1549;AVGPOST=0.7790;RSQ=0.3324;ERATE=0.0147;THETA=0.0014;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 104400849 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.821;BRSQ=0.485;LDAF=0.2645;AVGPOST=0.7633;RSQ=0.4973;ERATE=0.0348;THETA=0.0016;AC=427;AN=2184 GT:DS:GL:BD 0.19551282 0 1 104400856 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.746;BRSQ=0.510;LDAF=0.4401;AVGPOST=0.7335;RSQ=0.5161;ERATE=0.0793;THETA=0.0007;AC=889;AN=2184 GT:DS:GL:BD 0.40705130 0 1 104400861 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.557;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4217;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104400910 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1933;AVGPOST=0.9948;RSQ=0.9866;ERATE=0.0005;THETA=0.0019;AC=423;AN=2184 GT:DS:GL:BD 0.19368131 0 1 104401004 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0049;AVGPOST=0.9985;RSQ=0.8754;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104401005 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.915;LDAF=0.1661;AVGPOST=0.9694;RSQ=0.9184;ERATE=0.0070;THETA=0.0006;AC=358;AN=2184 GT:DS:GL:BD 0.16391942 0 1 104401080 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104401153 . GTA G 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5378;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104401195 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.986;LDAF=0.1613;AVGPOST=0.9964;RSQ=0.9907;ERATE=0.0003;THETA=0.0011;AC=353;AN=2184 GT:DS:GL:BD 0.16163003 0 1 104401274 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0321;AVGPOST=0.9998;RSQ=0.9975;ERATE=0.0003;THETA=0.0014;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 104401494 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0119;AVGPOST=0.9998;RSQ=0.9919;ERATE=0.0002;THETA=0.0008;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104401510 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0002;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104401527 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1025;AVGPOST=0.9997;RSQ=0.9985;ERATE=0.0003;THETA=0.0012;AC=224;AN=2184 GT:DS:GL:BD 0.10256410 0 1 104401643 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8531;ERATE=0.0003;THETA=0.0022;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104401679 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.976;LDAF=0.1402;AVGPOST=0.9951;RSQ=0.9856;ERATE=0.0080;THETA=0.0007;AC=306;AN=2184 GT:DS:GL:BD 0.14010990 0 1 104401713 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.965;LDAF=0.9600;AVGPOST=0.9963;RSQ=0.9642;ERATE=0.0005;THETA=0.0011;AC=2097;AN=2184 GT:DS:GL:BD 0.96016484 1 1 104401714 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9009;ERATE=0.0009;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104401759 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1637;AVGPOST=0.9996;RSQ=0.9987;ERATE=0.0002;THETA=0.0016;AC=358;AN=2184 GT:DS:GL:BD 0.16391942 0 1 104401794 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=0.9999;RSQ=0.9940;ERATE=0.0002;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104401805 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0083;AVGPOST=0.9998;RSQ=0.9898;ERATE=0.0002;THETA=0.0011;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104401831 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9823;ERATE=0.0002;THETA=0.0036;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104401844 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0089;AVGPOST=0.9992;RSQ=0.9678;ERATE=0.0002;THETA=0.0023;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104401849 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1633;AVGPOST=0.9993;RSQ=0.9984;ERATE=0.0002;THETA=0.0009;AC=357;AN=2184 GT:DS:GL:BD 0.16346154 0 1 104401861 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1633;AVGPOST=0.9996;RSQ=0.9988;ERATE=0.0002;THETA=0.0007;AC=356;AN=2184 GT:DS:GL:BD 0.16300367 0 1 104401883 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1569;AVGPOST=0.9992;RSQ=0.9975;ERATE=0.0003;THETA=0.0008;AC=344;AN=2184 GT:DS:GL:BD 0.15750916 0 1 104401889 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0324;AVGPOST=0.9996;RSQ=0.9953;ERATE=0.0002;THETA=0.0004;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 104401935 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1636;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0015;AC=358;AN=2184 GT:DS:GL:BD 0.16391942 0 1 104402108 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0027;AVGPOST=1.0000;RSQ=0.9920;ERATE=0.0002;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104402245 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3498;AVGPOST=0.9996;RSQ=0.9993;ERATE=0.0003;THETA=0.0018;AC=764;AN=2184 GT:DS:GL:BD 0.34981686 0 1 104402337 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104402458 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1527;AVGPOST=0.9993;RSQ=0.9983;ERATE=0.0002;THETA=0.0003;AC=333;AN=2184 GT:DS:GL:BD 0.15247253 0 1 104402459 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104402502 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1636;AVGPOST=1.0000;RSQ=0.9998;ERATE=0.0002;THETA=0.0004;AC=358;AN=2184 GT:DS:GL:BD 0.16391942 0 1 104402514 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0087;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104402530 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1636;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=358;AN=2184 GT:DS:GL:BD 0.16391942 0 1 104402531 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1627;AVGPOST=0.9991;RSQ=0.9972;ERATE=0.0006;THETA=0.0001;AC=356;AN=2184 GT:DS:GL:BD 0.16300367 0 1 104402729 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9382;ERATE=0.0002;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104402804 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1636;AVGPOST=0.9998;RSQ=0.9992;ERATE=0.0002;THETA=0.0018;AC=358;AN=2184 GT:DS:GL:BD 0.16391942 0 1 104402826 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0061;AVGPOST=0.9995;RSQ=0.9650;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104402890 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0083;AVGPOST=0.9998;RSQ=0.9902;ERATE=0.0002;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104402904 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.3504;AVGPOST=0.9985;RSQ=0.9974;ERATE=0.0004;THETA=0.0002;AC=765;AN=2184 GT:DS:GL:BD 0.35027471 0 1 104402995 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.3505;AVGPOST=0.9984;RSQ=0.9971;ERATE=0.0004;THETA=0.0013;AC=765;AN=2184 GT:DS:GL:BD 0.35027471 0 1 104402997 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9843;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104403039 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0055;AVGPOST=0.9988;RSQ=0.9098;ERATE=0.0004;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104403071 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1637;AVGPOST=0.9995;RSQ=0.9982;ERATE=0.0003;THETA=0.0008;AC=358;AN=2184 GT:DS:GL:BD 0.16391942 0 1 104403087 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0110;AVGPOST=0.9999;RSQ=0.9963;ERATE=0.0002;THETA=0.0008;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104403285 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1637;AVGPOST=0.9998;RSQ=0.9992;ERATE=0.0003;THETA=0.0009;AC=358;AN=2184 GT:DS:GL:BD 0.16391942 0 1 104403310 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1644;AVGPOST=0.9982;RSQ=0.9950;ERATE=0.0004;THETA=0.0011;AC=360;AN=2184 GT:DS:GL:BD 0.16483517 0 1 104403586 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.968;LDAF=0.1620;AVGPOST=0.9934;RSQ=0.9804;ERATE=0.0021;THETA=0.0004;AC=354;AN=2184 GT:DS:GL:BD 0.16208792 0 1 104403652 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1625;AVGPOST=0.9993;RSQ=0.9977;ERATE=0.0004;THETA=0.0003;AC=355;AN=2184 GT:DS:GL:BD 0.16254579 0 1 104403746 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1638;AVGPOST=0.9991;RSQ=0.9970;ERATE=0.0004;THETA=0.0007;AC=358;AN=2184 GT:DS:GL:BD 0.16391942 0 1 104403850 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.3244;AVGPOST=0.9965;RSQ=0.9938;ERATE=0.0006;THETA=0.0025;AC=709;AN=2184 GT:DS:GL:BD 0.32463369 0 1 104403858 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7160;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104403923 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7344;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104403938 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.804;LDAF=0.0056;AVGPOST=0.9988;RSQ=0.9228;ERATE=0.0004;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104403958 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=0.9999;RSQ=0.9940;ERATE=0.0002;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104403980 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3502;AVGPOST=0.9970;RSQ=0.9950;ERATE=0.0005;THETA=0.0009;AC=765;AN=2184 GT:DS:GL:BD 0.35027471 0 1 104404098 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9211;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104404115 . A AT 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4768;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104404138 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104404160 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1630;AVGPOST=0.9987;RSQ=0.9960;ERATE=0.0004;THETA=0.0010;AC=357;AN=2184 GT:DS:GL:BD 0.16346154 0 1 104404249 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1632;AVGPOST=0.9997;RSQ=0.9991;ERATE=0.0002;THETA=0.0002;AC=357;AN=2184 GT:DS:GL:BD 0.16346154 0 1 104404342 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1631;AVGPOST=0.9996;RSQ=0.9986;ERATE=0.0003;THETA=0.0009;AC=357;AN=2184 GT:DS:GL:BD 0.16346154 0 1 104404381 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0029;AVGPOST=0.9992;RSQ=0.9027;ERATE=0.0003;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104404496 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6265;ERATE=0.0003;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104404509 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.758;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104404626 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.939;LDAF=0.0131;AVGPOST=0.9994;RSQ=0.9769;ERATE=0.0003;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104404667 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104404684 . AT A 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5035;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104404714 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6088;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104404834 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9738;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104404930 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=0.9997;RSQ=0.9734;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104404935 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7063;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104404997 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8858;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104405234 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0299;AVGPOST=0.9993;RSQ=0.9915;ERATE=0.0003;THETA=0.0005;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 104405377 . A AC 14 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5493;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104405415 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104405429 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8061;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104405784 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7877;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104405824 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.662;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104405833 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0008;AVGPOST=0.9998;RSQ=0.8876;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104405935 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0087;AVGPOST=0.9995;RSQ=0.9708;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104406090 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0365;AVGPOST=0.9997;RSQ=0.9965;ERATE=0.0003;THETA=0.0006;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 104406124 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7607;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104406149 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0055;AVGPOST=1.0000;RSQ=0.9960;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104406315 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.7338;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104406367 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6474;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104406401 . A AC 33 PASS INDEL;BAVGPOST=0.999;BRSQ=0.719;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.6299;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104406462 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104406807 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9936;ERATE=0.0003;THETA=0.0015;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104406847 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.6974;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104406852 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0191;AVGPOST=0.9994;RSQ=0.9869;ERATE=0.0003;THETA=0.0004;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 104407000 . TG T 100 PASS INDEL;BAVGPOST=0.999;BRSQ=0.776;LDAF=0.0023;AVGPOST=0.9971;RSQ=0.5696;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104407045 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.650;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5768;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104407077 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104407090 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9614;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104407155 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8735;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104407166 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9936;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104407272 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9998;RSQ=0.9849;ERATE=0.0003;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104407274 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.960;LDAF=0.0506;AVGPOST=0.9948;RSQ=0.9630;ERATE=0.0004;THETA=0.0005;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 104407386 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7420;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104407452 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104407637 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5780;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104407691 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.963;LDAF=0.0160;AVGPOST=0.9990;RSQ=0.9742;ERATE=0.0003;THETA=0.0007;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 104407733 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1185;AVGPOST=0.9984;RSQ=0.9936;ERATE=0.0003;THETA=0.0008;AC=259;AN=2184 GT:DS:GL:BD 0.11858974 0 1 104407749 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0132;AVGPOST=0.9997;RSQ=0.9904;ERATE=0.0003;THETA=0.0010;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104407842 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7635;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104407906 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9320;ERATE=0.0003;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104408087 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6419;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104408131 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0044;AVGPOST=0.9988;RSQ=0.9023;ERATE=0.0004;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104408142 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.2082;AVGPOST=0.9977;RSQ=0.9949;ERATE=0.0003;THETA=0.0005;AC=456;AN=2184 GT:DS:GL:BD 0.20879121 0 1 104408145 . ACTGT A 294 PASS INDEL;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5198;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104408151 . G GA 21 PASS INDEL;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6151;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104408154 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1671;AVGPOST=0.9993;RSQ=0.9978;ERATE=0.0003;THETA=0.0007;AC=366;AN=2184 GT:DS:GL:BD 0.16758242 0 1 104408181 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0041;AVGPOST=0.9999;RSQ=0.9841;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104408232 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0427;AVGPOST=0.9987;RSQ=0.9894;ERATE=0.0004;THETA=0.0012;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 104408263 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104408332 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4701;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104408385 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6208;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104408386 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.756;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6299;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104408424 . C CT 822 PASS INDEL;BAVGPOST=0.981;BRSQ=0.667;LDAF=0.0454;AVGPOST=0.9647;RSQ=0.6899;ERATE=0.0051;THETA=0.0008;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 104408433 . TTTC T 1038 PASS INDEL;BAVGPOST=0.979;BRSQ=0.660;LDAF=0.0459;AVGPOST=0.9612;RSQ=0.6606;ERATE=0.0045;THETA=0.0008;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 104408434 rs66467215 C CT 12529 PASS INDEL;BAVGPOST=0.912;BRSQ=0.809;LDAF=0.2709;AVGPOST=0.9012;RSQ=0.8219;ERATE=0.0184;THETA=0.0011;AC=588;AN=2184 GT:DS:GL:BD 0.26923078 0 1 104408437 rs59754847 T TCTTC 4698 PASS INDEL;BAVGPOST=0.984;BRSQ=0.860;LDAF=0.0698;AVGPOST=0.9561;RSQ=0.7645;ERATE=0.0052;THETA=0.0008;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 104408440 rs10566368 C CT 845 PASS INDEL;BAVGPOST=0.978;BRSQ=0.549;LDAF=0.0546;AVGPOST=0.9479;RSQ=0.6295;ERATE=0.0051;THETA=0.0002;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 104408457 . C CT 196 PASS INDEL;BAVGPOST=0.993;BRSQ=0.529;LDAF=0.0188;AVGPOST=0.9801;RSQ=0.5924;ERATE=0.0026;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104408461 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.619;LDAF=0.0036;AVGPOST=0.9951;RSQ=0.4839;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104408465 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.861;BRSQ=0.612;LDAF=0.2898;AVGPOST=0.8266;RSQ=0.6010;ERATE=0.0947;THETA=0.0010;AC=541;AN=2184 GT:DS:GL:BD 0.24771062 0 1 104408466 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.539;LDAF=0.0055;AVGPOST=0.9944;RSQ=0.5920;ERATE=0.0009;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104408478 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.988;LDAF=0.3914;AVGPOST=0.9933;RSQ=0.9895;ERATE=0.0014;THETA=0.0003;AC=857;AN=2184 GT:DS:GL:BD 0.39239928 0 1 104408514 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0769;AVGPOST=0.9997;RSQ=0.9982;ERATE=0.0003;THETA=0.0004;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 104408581 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.938;LDAF=0.0120;AVGPOST=0.9995;RSQ=0.9825;ERATE=0.0004;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104408666 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9436;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104408667 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.7890;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104408716 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0036;AVGPOST=0.9993;RSQ=0.9057;ERATE=0.0004;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104408718 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9420;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104408948 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9490;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104408950 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0382;AVGPOST=0.9995;RSQ=0.9944;ERATE=0.0003;THETA=0.0004;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 104409056 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0056;AVGPOST=0.9994;RSQ=0.9490;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104409097 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4753;AVGPOST=0.9979;RSQ=0.9973;ERATE=0.0003;THETA=0.0005;AC=1039;AN=2184 GT:DS:GL:BD 0.47573259 0 1 104409109 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7607;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104409145 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1218;AVGPOST=0.9948;RSQ=0.9821;ERATE=0.0014;THETA=0.0009;AC=264;AN=2184 GT:DS:GL:BD 0.12087912 0 1 104409169 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9421;ERATE=0.0009;THETA=0.0030;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104409309 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0138;AVGPOST=0.9989;RSQ=0.9730;ERATE=0.0003;THETA=0.0014;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104409344 . AC A 476 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9607;ERATE=0.0003;THETA=0.0043;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104409416 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104409439 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0054;AVGPOST=0.9999;RSQ=0.9924;ERATE=0.0003;THETA=0.0034;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104409451 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0142;AVGPOST=0.9999;RSQ=0.9963;ERATE=0.0003;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 104409486 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104409611 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0020;AVGPOST=0.9981;RSQ=0.6661;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104409679 . A AT 2528 PASS INDEL;BAVGPOST=0.998;BRSQ=0.980;LDAF=0.0210;AVGPOST=0.9934;RSQ=0.8858;ERATE=0.0007;THETA=0.0009;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 104409728 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0036;AVGPOST=0.9980;RSQ=0.7649;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104409801 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0017;AVGPOST=0.9980;RSQ=0.5200;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104409874 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0019;AVGPOST=0.9978;RSQ=0.5896;ERATE=0.0003;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104409939 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0038;AVGPOST=0.9975;RSQ=0.7529;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104409981 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9741;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104410000 . CAT C 532 PASS INDEL;BAVGPOST=0.998;BRSQ=0.699;LDAF=0.0049;AVGPOST=0.9972;RSQ=0.7785;ERATE=0.0005;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104410086 rs113457903 CAA C 68 PASS INDEL;BAVGPOST=1.000;BRSQ=0.687;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4863;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104410247 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9420;ERATE=0.0008;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104410369 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104410458 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0039;AVGPOST=0.9992;RSQ=0.9107;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104410716 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.750;LDAF=0.0023;AVGPOST=0.9973;RSQ=0.6060;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104410986 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4665;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104411025 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.918;LDAF=0.0221;AVGPOST=0.9968;RSQ=0.9438;ERATE=0.0004;THETA=0.0006;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 104411176 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0141;AVGPOST=0.9977;RSQ=0.9338;ERATE=0.0005;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104411232 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.967;LDAF=0.0165;AVGPOST=0.9982;RSQ=0.9620;ERATE=0.0003;THETA=0.0006;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104411291 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.792;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.1329;ERATE=0.0003;THETA=0.0007;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104411310 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7519;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104411457 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.861;LDAF=0.0112;AVGPOST=0.9977;RSQ=0.9229;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104411459 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.788;LDAF=0.0109;AVGPOST=0.9964;RSQ=0.8760;ERATE=0.0004;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104411587 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0612;AVGPOST=0.9989;RSQ=0.9932;ERATE=0.0004;THETA=0.0009;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 104411706 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5466;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104411854 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.683;LDAF=0.0028;AVGPOST=0.9953;RSQ=0.3613;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104412300 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.752;LDAF=0.0034;AVGPOST=0.9955;RSQ=0.4570;ERATE=0.0012;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104412306 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104412399 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7547;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104412436 . C CA 588 PASS INDEL;BAVGPOST=0.956;BRSQ=0.609;LDAF=0.0898;AVGPOST=0.9090;RSQ=0.5304;ERATE=0.0348;THETA=0.0004;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 104412649 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.849;LDAF=0.0048;AVGPOST=0.9976;RSQ=0.8002;ERATE=0.0007;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104412652 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6629;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104412717 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5703;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104412854 . C CA 64 PASS INDEL;BAVGPOST=0.991;BRSQ=0.524;LDAF=0.0203;AVGPOST=0.9762;RSQ=0.5349;ERATE=0.0051;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104412882 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6244;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104412901 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.1018;AVGPOST=0.9989;RSQ=0.9965;ERATE=0.0003;THETA=0.0006;AC=223;AN=2184 GT:DS:GL:BD 0.10210623 0 1 104412911 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0029;AVGPOST=0.9989;RSQ=0.8572;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104413035 . CG C 121 PASS INDEL;BAVGPOST=0.999;BRSQ=0.693;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.6111;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104413389 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.783;LDAF=0.0025;AVGPOST=0.9985;RSQ=0.7871;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104413493 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0002;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104413494 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0019;AVGPOST=0.9976;RSQ=0.5601;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104413516 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0037;AVGPOST=0.9981;RSQ=0.7929;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104413574 . TA T 20 PASS INDEL;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104413610 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8025;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104413652 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0192;AVGPOST=0.9991;RSQ=0.9814;ERATE=0.0004;THETA=0.0003;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 104413775 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.685;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6455;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104413814 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0622;AVGPOST=0.9970;RSQ=0.9828;ERATE=0.0008;THETA=0.0005;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 104413903 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4150;AVGPOST=0.9995;RSQ=0.9992;ERATE=0.0003;THETA=0.0002;AC=906;AN=2184 GT:DS:GL:BD 0.41483516 0 1 104414012 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104414041 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104414129 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104414132 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104414231 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104414242 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104414310 rs66554404 AG A 14484 PASS INDEL;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0749;AVGPOST=0.9987;RSQ=0.9936;ERATE=0.0004;THETA=0.0005;AC=163;AN=2184 GT:DS:GL:BD 0.07463370 0 1 104414379 . TAGAG T 2287 PASS INDEL;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0204;AVGPOST=0.9989;RSQ=0.9742;ERATE=0.0004;THETA=0.0003;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 104414492 . G GA 7603 PASS INDEL;BAVGPOST=0.957;BRSQ=0.849;LDAF=0.1876;AVGPOST=0.9037;RSQ=0.7586;ERATE=0.0296;THETA=0.0010;AC=352;AN=2184 GT:DS:GL:BD 0.16117217 0 1 104414513 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0016;AVGPOST=0.9981;RSQ=0.5584;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104414602 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0022;AVGPOST=0.9988;RSQ=0.7862;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104414789 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104415044 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0099;AVGPOST=0.9994;RSQ=0.9728;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104415185 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.893;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8877;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104415235 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5347;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104415257 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0020;AVGPOST=0.9976;RSQ=0.5774;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104415276 . A AAATAG 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4403;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104415292 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7031;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104415385 . A AG 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.739;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4684;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104415428 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1202;AVGPOST=0.9989;RSQ=0.9969;ERATE=0.0003;THETA=0.0005;AC=262;AN=2184 GT:DS:GL:BD 0.11996337 0 1 104415590 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0194;AVGPOST=0.9975;RSQ=0.9522;ERATE=0.0003;THETA=0.0008;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 104415599 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0210;AVGPOST=0.9980;RSQ=0.9593;ERATE=0.0004;THETA=0.0003;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 104415621 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0208;AVGPOST=0.9984;RSQ=0.9630;ERATE=0.0004;THETA=0.0005;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 104415676 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.546;LDAF=0.0015;AVGPOST=0.9975;RSQ=0.3270;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104415683 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.956;BRSQ=0.911;LDAF=0.2902;AVGPOST=0.9364;RSQ=0.8982;ERATE=0.0150;THETA=0.0007;AC=637;AN=2184 GT:DS:GL:BD 0.29166666 0 1 104415793 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.850;LDAF=0.0040;AVGPOST=0.9968;RSQ=0.6916;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104415853 . G GT 95 PASS INDEL;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7494;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104415903 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.950;LDAF=0.1257;AVGPOST=0.9917;RSQ=0.9723;ERATE=0.0004;THETA=0.0008;AC=274;AN=2184 GT:DS:GL:BD 0.12545788 0 1 104416097 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0004;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104416134 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9047;ERATE=0.0002;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104416180 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6237;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104416419 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3027;AVGPOST=0.9980;RSQ=0.9966;ERATE=0.0005;THETA=0.0003;AC=661;AN=2184 GT:DS:GL:BD 0.30265567 0 1 104416579 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3036;AVGPOST=0.9984;RSQ=0.9973;ERATE=0.0004;THETA=0.0003;AC=663;AN=2184 GT:DS:GL:BD 0.30357143 0 1 104416601 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0091;AVGPOST=0.9978;RSQ=0.8929;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104416619 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3208;AVGPOST=0.9994;RSQ=0.9989;ERATE=0.0003;THETA=0.0002;AC=701;AN=2184 GT:DS:GL:BD 0.32097068 0 1 104416678 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8156;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104416707 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1264;AVGPOST=0.9986;RSQ=0.9968;ERATE=0.0003;THETA=0.0003;AC=277;AN=2184 GT:DS:GL:BD 0.12683150 0 1 104416714 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0063;AVGPOST=0.9994;RSQ=0.9571;ERATE=0.0002;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104416803 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3024;AVGPOST=0.9990;RSQ=0.9984;ERATE=0.0003;THETA=0.0006;AC=661;AN=2184 GT:DS:GL:BD 0.30265567 0 1 104416835 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0691;AVGPOST=0.9989;RSQ=0.9942;ERATE=0.0002;THETA=0.0005;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 104416862 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0180;AVGPOST=0.9987;RSQ=0.9696;ERATE=0.0004;THETA=0.0007;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 104416949 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6666;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104416995 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6284;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104417009 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8278;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104417032 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0044;AVGPOST=0.9991;RSQ=0.9064;ERATE=0.0003;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104417152 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5888;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104417154 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104417299 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0023;AVGPOST=0.9997;RSQ=0.9448;ERATE=0.0002;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104417397 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.7004;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104417499 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0002;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104417788 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.971;LDAF=0.0239;AVGPOST=0.9983;RSQ=0.9738;ERATE=0.0003;THETA=0.0006;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104417814 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7619;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104417825 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0045;AVGPOST=0.9986;RSQ=0.8869;ERATE=0.0003;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104417835 rs11381877 G GC 146148 PASS INDEL;BAVGPOST=1.000;BRSQ=0;LDAF=0.9996;AVGPOST=0.9992;RSQ=0.1611;ERATE=0.0002;THETA=0.0003;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 104417957 . AC A 267 PASS INDEL;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0026;AVGPOST=0.9973;RSQ=0.6024;ERATE=0.0008;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104418050 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0025;AVGPOST=0.9992;RSQ=0.8830;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104418104 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9293;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104418115 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6964;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104418336 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5839;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104418351 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0031;AVGPOST=0.9994;RSQ=0.9016;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104418396 . TAAC T 212 PASS INDEL;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0013;AVGPOST=0.9980;RSQ=0.4327;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104418487 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.5847;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104418672 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6180;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104418686 . TC T 112 PASS INDEL;BAVGPOST=0.999;BRSQ=0.765;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8025;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104418723 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6695;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104418797 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5386;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104418966 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0184;AVGPOST=0.9997;RSQ=0.9927;ERATE=0.0003;THETA=0.0006;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 104418968 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104419055 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0073;AVGPOST=0.9986;RSQ=0.9409;ERATE=0.0002;THETA=0.0013;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104419450 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.865;LDAF=0.0085;AVGPOST=0.9986;RSQ=0.9400;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104419466 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0037;AVGPOST=0.9963;RSQ=0.6629;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104419575 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0537;AVGPOST=0.9992;RSQ=0.9926;ERATE=0.0003;THETA=0.0004;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 104419601 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6622;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104419668 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5302;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104419757 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.4272;AVGPOST=0.9961;RSQ=0.9934;ERATE=0.0005;THETA=0.0004;AC=935;AN=2184 GT:DS:GL:BD 0.42811355 0 1 104419791 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.2931;AVGPOST=0.9951;RSQ=0.9916;ERATE=0.0004;THETA=0.0005;AC=639;AN=2184 GT:DS:GL:BD 0.29258242 0 1 104419802 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8210;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104419924 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0025;AVGPOST=0.9978;RSQ=0.6775;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104419934 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9717;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104419948 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8091;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104419972 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8321;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104420079 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0088;AVGPOST=0.9993;RSQ=0.9683;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104420167 rs11414393 C CT 98440 PASS INDEL;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.7775;AVGPOST=0.9959;RSQ=0.9916;ERATE=0.0003;THETA=0.0005;AC=1699;AN=2184 GT:DS:GL:BD 0.77793038 1 1 104420279 . T TC 28027 PASS INDEL;BAVGPOST=0.982;BRSQ=0.957;LDAF=0.7691;AVGPOST=0.9772;RSQ=0.9560;ERATE=0.0035;THETA=0.0002;AC=1693;AN=2184 GT:DS:GL:BD 0.77518314 1 1 104420280 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.960;LDAF=0.0787;AVGPOST=0.9929;RSQ=0.9698;ERATE=0.0003;THETA=0.0007;AC=170;AN=2184 GT:DS:GL:BD 0.07783883 0 1 104420586 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7513;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104420729 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.894;LDAF=0.0218;AVGPOST=0.9986;RSQ=0.9729;ERATE=0.0002;THETA=0.0007;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 104420765 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0048;AVGPOST=0.9985;RSQ=0.8804;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104420790 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0002;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104420835 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5966;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104420836 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7515;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104420868 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9131;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104420939 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.752;LDAF=0.0029;AVGPOST=0.9975;RSQ=0.6715;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104420960 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104421068 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.9075;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104421199 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7215;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104421212 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4273;AVGPOST=0.9973;RSQ=0.9952;ERATE=0.0003;THETA=0.0002;AC=934;AN=2184 GT:DS:GL:BD 0.42765567 0 1 104421245 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.875;LDAF=0.0037;AVGPOST=0.9992;RSQ=0.9146;ERATE=0.0002;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104421286 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.9090;ERATE=0.0002;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104421288 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9614;ERATE=0.0002;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104421306 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5292;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104421383 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0535;AVGPOST=0.9995;RSQ=0.9953;ERATE=0.0003;THETA=0.0003;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 104421411 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8964;ERATE=0.0002;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104421431 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.757;LDAF=0.0020;AVGPOST=0.9991;RSQ=0.7986;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104421454 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.7234;AVGPOST=0.9982;RSQ=0.9964;ERATE=0.0003;THETA=0.0004;AC=1578;AN=2184 GT:DS:GL:BD 0.72252744 1 1 104421514 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.8401;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104421608 . C CT 510 PASS INDEL;BAVGPOST=0.973;BRSQ=0.583;LDAF=0.0688;AVGPOST=0.9190;RSQ=0.4946;ERATE=0.0180;THETA=0.0005;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 104421608 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9468;AVGPOST=0.9995;RSQ=0.9971;ERATE=0.0002;THETA=0.0008;AC=2068;AN=2184 GT:DS:GL:BD 0.94688642 1 1 104421745 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0054;AVGPOST=0.9990;RSQ=0.9200;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104422033 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0075;AVGPOST=0.9996;RSQ=0.9774;ERATE=0.0002;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104422084 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0531;AVGPOST=0.9984;RSQ=0.9869;ERATE=0.0004;THETA=0.0005;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 104422134 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7415;ERATE=0.0006;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104422190 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0002;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104422297 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0207;AVGPOST=0.9984;RSQ=0.9748;ERATE=0.0003;THETA=0.0011;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 104422487 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0536;AVGPOST=0.9998;RSQ=0.9983;ERATE=0.0002;THETA=0.0005;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 104422599 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.888;LDAF=0.0467;AVGPOST=0.9916;RSQ=0.9300;ERATE=0.0007;THETA=0.0003;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 104422721 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0034;AVGPOST=0.9987;RSQ=0.8428;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104422848 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0540;AVGPOST=0.9995;RSQ=0.9950;ERATE=0.0003;THETA=0.0004;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 104422849 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.852;LDAF=0.0065;AVGPOST=0.9982;RSQ=0.8922;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104422858 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0128;AVGPOST=0.9989;RSQ=0.9677;ERATE=0.0003;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104422940 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7793;AVGPOST=0.9979;RSQ=0.9956;ERATE=0.0004;THETA=0.0002;AC=1703;AN=2184 GT:DS:GL:BD 0.77976191 1 1 104422999 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.678;LDAF=0.0055;AVGPOST=0.9980;RSQ=0.8636;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104423010 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0060;AVGPOST=0.9989;RSQ=0.9301;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104423105 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4275;AVGPOST=0.9959;RSQ=0.9929;ERATE=0.0006;THETA=0.0007;AC=932;AN=2184 GT:DS:GL:BD 0.42673993 0 1 104423156 . A AT 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8123;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104423165 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0014;AVGPOST=0.9994;RSQ=0.8128;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104423171 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9465;AVGPOST=0.9989;RSQ=0.9923;ERATE=0.0003;THETA=0.0005;AC=2068;AN=2184 GT:DS:GL:BD 0.94688642 1 1 104423207 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.877;LDAF=0.0037;AVGPOST=0.9985;RSQ=0.8229;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104423275 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.950;LDAF=0.9844;AVGPOST=0.9995;RSQ=0.9858;ERATE=0.0003;THETA=0.0006;AC=2150;AN=2184 GT:DS:GL:BD 0.98443222 1 1 104423313 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0029;AVGPOST=0.9989;RSQ=0.8626;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104423342 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.814;LDAF=0.0057;AVGPOST=0.9982;RSQ=0.8640;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104423431 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0029;AVGPOST=0.9978;RSQ=0.6939;ERATE=0.0007;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104423437 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0002;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104423438 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0010;AVGPOST=0.9986;RSQ=0.3798;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104423503 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0174;AVGPOST=0.9983;RSQ=0.9640;ERATE=0.0004;THETA=0.0006;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104423519 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104423527 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104423573 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.3976;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104423632 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0038;AVGPOST=0.9983;RSQ=0.8030;ERATE=0.0004;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104423646 . G GA 8158 PASS INDEL;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0532;AVGPOST=0.9971;RSQ=0.9753;ERATE=0.0006;THETA=0.0009;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 104423650 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.875;LDAF=0.1068;AVGPOST=0.9673;RSQ=0.8741;ERATE=0.0060;THETA=0.0003;AC=220;AN=2184 GT:DS:GL:BD 0.10073260 0 1 104423667 . AT A 271 PASS INDEL;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9125;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104423797 . TA T 640 PASS INDEL;BAVGPOST=0.996;BRSQ=0.750;LDAF=0.0075;AVGPOST=0.9967;RSQ=0.8259;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104423874 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9667;ERATE=0.0002;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104423875 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0020;AVGPOST=0.9971;RSQ=0.4151;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104423883 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.893;LDAF=0.0124;AVGPOST=0.9974;RSQ=0.9168;ERATE=0.0003;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104424327 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0002;AVGPOST=0.9997;RSQ=0.0498;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104424334 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.794;LDAF=0.0096;AVGPOST=0.9981;RSQ=0.9124;ERATE=0.0005;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104424354 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8177;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104424364 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9834;AVGPOST=0.9997;RSQ=0.9919;ERATE=0.0003;THETA=0.0009;AC=2148;AN=2184 GT:DS:GL:BD 0.98351645 1 1 104424369 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0141;AVGPOST=0.9982;RSQ=0.9431;ERATE=0.0005;THETA=0.0009;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104424386 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9460;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104424613 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0059;AVGPOST=0.9983;RSQ=0.8759;ERATE=0.0005;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104424693 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.7002;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104424708 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8765;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104424737 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.988;LDAF=0.4498;AVGPOST=0.9798;RSQ=0.9731;ERATE=0.0042;THETA=0.0004;AC=983;AN=2184 GT:DS:GL:BD 0.45009157 0 1 104424820 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4785;AVGPOST=0.9963;RSQ=0.9948;ERATE=0.0009;THETA=0.0004;AC=1045;AN=2184 GT:DS:GL:BD 0.47847986 0 1 104424876 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4930;AVGPOST=0.9982;RSQ=0.9973;ERATE=0.0004;THETA=0.0009;AC=1077;AN=2184 GT:DS:GL:BD 0.49313188 0 1 104424897 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8686;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104424966 . T TA 92 PASS INDEL;BAVGPOST=0.999;BRSQ=0.654;LDAF=0.0055;AVGPOST=0.9930;RSQ=0.5075;ERATE=0.0006;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104425000 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5496;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104425051 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4237;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104425101 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0020;AVGPOST=0.9994;RSQ=0.8482;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104425163 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.5127;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104425196 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104425300 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2504;AVGPOST=0.9986;RSQ=0.9974;ERATE=0.0003;THETA=0.0006;AC=546;AN=2184 GT:DS:GL:BD 0.25000000 0 1 104425329 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104425370 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0097;AVGPOST=0.9991;RSQ=0.9590;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104425407 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0067;AVGPOST=0.9977;RSQ=0.8643;ERATE=0.0005;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104425579 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.894;LDAF=0.0081;AVGPOST=0.9975;RSQ=0.8695;ERATE=0.0005;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104425598 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.699;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6490;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104425611 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4550;AVGPOST=0.9968;RSQ=0.9954;ERATE=0.0005;THETA=0.0006;AC=990;AN=2184 GT:DS:GL:BD 0.45329669 0 1 104425633 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6530;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104425759 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0026;AVGPOST=0.9981;RSQ=0.6962;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104425793 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4711;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104425846 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.642;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6580;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104425876 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8559;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104425889 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104425891 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.979;LDAF=0.4527;AVGPOST=0.9926;RSQ=0.9888;ERATE=0.0015;THETA=0.0007;AC=990;AN=2184 GT:DS:GL:BD 0.45329669 0 1 104425975 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0269;AVGPOST=0.9967;RSQ=0.9573;ERATE=0.0005;THETA=0.0003;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 104425984 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.702;LDAF=0.0036;AVGPOST=0.9973;RSQ=0.6787;ERATE=0.0005;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104426142 . AAAAG A 726 PASS INDEL;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0124;AVGPOST=0.9984;RSQ=0.9504;ERATE=0.0003;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104426224 . AG A 219 PASS INDEL;BAVGPOST=0.925;BRSQ=0.315;LDAF=0.0888;AVGPOST=0.9034;RSQ=0.5387;ERATE=0.0038;THETA=0.0003;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 104426231 . GA G 2803 PASS INDEL;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0219;AVGPOST=0.9979;RSQ=0.9629;ERATE=0.0004;THETA=0.0006;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 104426232 . AG A 241 PASS INDEL;BAVGPOST=0.939;BRSQ=0.339;LDAF=0.1160;AVGPOST=0.8676;RSQ=0.4713;ERATE=0.0087;THETA=0.0002;AC=188;AN=2184 GT:DS:GL:BD 0.08608059 0 1 104426235 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.7359;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104426413 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2506;AVGPOST=0.9985;RSQ=0.9973;ERATE=0.0003;THETA=0.0003;AC=546;AN=2184 GT:DS:GL:BD 0.25000000 0 1 104426462 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6494;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104426497 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5353;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104426499 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8409;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104426519 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.5845;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104426630 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.978;LDAF=0.0524;AVGPOST=0.9983;RSQ=0.9882;ERATE=0.0004;THETA=0.0005;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 104426779 . GAAC G 82 PASS INDEL;BAVGPOST=0.992;BRSQ=0.714;LDAF=0.0185;AVGPOST=0.9804;RSQ=0.5728;ERATE=0.0065;THETA=0.0002;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104426889 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104427022 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7677;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104427167 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5301;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104427189 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0351;AVGPOST=0.9975;RSQ=0.9719;ERATE=0.0003;THETA=0.0002;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 104427212 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.6951;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104427296 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1660;AVGPOST=0.9957;RSQ=0.9868;ERATE=0.0008;THETA=0.0002;AC=361;AN=2184 GT:DS:GL:BD 0.16529304 0 1 104427305 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104427367 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0053;AVGPOST=0.9986;RSQ=0.8973;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104427497 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8095;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104427635 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.773;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6808;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104427636 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5543;ERATE=0.0006;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104427885 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9998;RSQ=0.9767;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104427938 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.893;LDAF=0.0289;AVGPOST=0.9905;RSQ=0.8836;ERATE=0.0004;THETA=0.0006;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 104428138 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.893;LDAF=0.0302;AVGPOST=0.9901;RSQ=0.8846;ERATE=0.0005;THETA=0.0002;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 104428160 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.729;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4053;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104428168 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.749;LDAF=0.0026;AVGPOST=0.9975;RSQ=0.6159;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104428261 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0040;AVGPOST=0.9982;RSQ=0.8755;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104428683 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.4556;AVGPOST=0.9934;RSQ=0.9912;ERATE=0.0003;THETA=0.0003;AC=996;AN=2184 GT:DS:GL:BD 0.45604396 0 1 104428713 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2511;AVGPOST=0.9980;RSQ=0.9963;ERATE=0.0004;THETA=0.0006;AC=547;AN=2184 GT:DS:GL:BD 0.25045788 0 1 104428777 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.5998;ERATE=0.0007;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104428790 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6436;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104429028 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=1.0000;RSQ=0.9952;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104429078 . GC G 663 PASS INDEL;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0048;AVGPOST=0.9994;RSQ=0.9367;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104429113 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.5548;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104429125 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4660;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104429461 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0038;AVGPOST=0.9985;RSQ=0.8575;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104429524 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0018;AVGPOST=0.9976;RSQ=0.5072;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104429534 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0069;AVGPOST=0.9994;RSQ=0.9583;ERATE=0.0002;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104429538 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0307;AVGPOST=0.9989;RSQ=0.9867;ERATE=0.0004;THETA=0.0005;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 104429583 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6416;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104429650 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6850;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104429669 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6594;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104429833 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104429850 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0002;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104429870 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4641;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104430036 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4213;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104430145 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4425;AVGPOST=0.9978;RSQ=0.9970;ERATE=0.0002;THETA=0.0003;AC=967;AN=2184 GT:DS:GL:BD 0.44276556 0 1 104430169 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0772;AVGPOST=0.9983;RSQ=0.9901;ERATE=0.0005;THETA=0.0005;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 104430190 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0028;AVGPOST=0.9995;RSQ=0.9242;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104430206 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104430208 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.3478;AVGPOST=0.9974;RSQ=0.9953;ERATE=0.0004;THETA=0.0003;AC=760;AN=2184 GT:DS:GL:BD 0.34798536 0 1 104430209 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0050;AVGPOST=0.9991;RSQ=0.9260;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104430297 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0776;AVGPOST=0.9996;RSQ=0.9974;ERATE=0.0003;THETA=0.0006;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 104430299 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0215;AVGPOST=0.9995;RSQ=0.9891;ERATE=0.0003;THETA=0.0004;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 104430332 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.9060;ERATE=0.0015;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104430342 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3494;AVGPOST=0.9976;RSQ=0.9957;ERATE=0.0006;THETA=0.0003;AC=762;AN=2184 GT:DS:GL:BD 0.34890109 0 1 104430391 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104430395 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0040;AVGPOST=0.9990;RSQ=0.9029;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104430464 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0117;AVGPOST=0.9995;RSQ=0.9852;ERATE=0.0003;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104430558 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0045;AVGPOST=0.9991;RSQ=0.9125;ERATE=0.0004;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104430598 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0052;AVGPOST=0.9996;RSQ=0.9642;ERATE=0.0002;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104430639 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0038;AVGPOST=0.9980;RSQ=0.7942;ERATE=0.0002;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104430706 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104430884 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6333;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104431064 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0003;AVGPOST=0.9994;RSQ=0.2638;ERATE=0.0002;THETA=0.0025;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104431075 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0237;AVGPOST=0.9991;RSQ=0.9831;ERATE=0.0004;THETA=0.0004;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104431109 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9797;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104431276 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0271;AVGPOST=0.9996;RSQ=0.9939;ERATE=0.0003;THETA=0.0003;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 104431310 . AGGGT A 42 PASS INDEL;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5938;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104431411 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6470;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104431547 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104431563 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5281;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104431571 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3671;AVGPOST=0.9986;RSQ=0.9976;ERATE=0.0005;THETA=0.0005;AC=801;AN=2184 GT:DS:GL:BD 0.36675823 0 1 104431578 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0004;AVGPOST=0.9996;RSQ=0.5971;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104431605 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8625;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104431706 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0777;AVGPOST=0.9994;RSQ=0.9968;ERATE=0.0003;THETA=0.0006;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 104431747 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0070;AVGPOST=0.9998;RSQ=0.9846;ERATE=0.0002;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104431955 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9353;ERATE=0.0002;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104432040 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0018;AVGPOST=0.9987;RSQ=0.7244;ERATE=0.0002;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104432084 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0014;AVGPOST=0.9986;RSQ=0.5949;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104432120 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7841;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104432174 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104432213 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.967;LDAF=0.0239;AVGPOST=0.9992;RSQ=0.9846;ERATE=0.0005;THETA=0.0006;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 104432333 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.921;LDAF=0.1247;AVGPOST=0.9659;RSQ=0.8884;ERATE=0.0024;THETA=0.0011;AC=257;AN=2184 GT:DS:GL:BD 0.11767399 0 1 104432356 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6767;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104432377 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0069;AVGPOST=0.9997;RSQ=0.9789;ERATE=0.0002;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104432399 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104432621 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104432643 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104432661 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0025;AVGPOST=0.9991;RSQ=0.8773;ERATE=0.0002;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104432681 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.735;LDAF=0.0032;AVGPOST=0.9971;RSQ=0.6867;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104432728 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0170;AVGPOST=0.9995;RSQ=0.9888;ERATE=0.0002;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104432797 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6441;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104432853 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0227;AVGPOST=0.9986;RSQ=0.9754;ERATE=0.0004;THETA=0.0006;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 104432871 rs78368928 C CA 6995 PASS INDEL;BAVGPOST=0.997;BRSQ=0.982;LDAF=0.0792;AVGPOST=0.9931;RSQ=0.9657;ERATE=0.0011;THETA=0.0004;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 104432901 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1655;AVGPOST=0.9989;RSQ=0.9976;ERATE=0.0002;THETA=0.0004;AC=362;AN=2184 GT:DS:GL:BD 0.16575092 0 1 104432961 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0023;AVGPOST=0.9982;RSQ=0.7012;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104433057 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0023;AVGPOST=0.9986;RSQ=0.7646;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104433058 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0023;AVGPOST=0.9993;RSQ=0.8821;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104433103 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104433114 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5994;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104433137 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1651;AVGPOST=0.9989;RSQ=0.9972;ERATE=0.0003;THETA=0.0007;AC=361;AN=2184 GT:DS:GL:BD 0.16529304 0 1 104433205 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8426;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104433282 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0070;AVGPOST=0.9973;RSQ=0.8346;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104433340 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.750;LDAF=0.0038;AVGPOST=0.9971;RSQ=0.7080;ERATE=0.0009;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104433360 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0002;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104433361 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0020;AVGPOST=0.9983;RSQ=0.6696;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104433399 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0008;AVGPOST=0.9989;RSQ=0.4112;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104433407 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7272;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104433410 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0671;AVGPOST=0.9991;RSQ=0.9949;ERATE=0.0004;THETA=0.0008;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 104433467 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.9152;ERATE=0.0003;THETA=0.0029;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104433717 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104433722 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0617;AVGPOST=0.9997;RSQ=0.9982;ERATE=0.0002;THETA=0.0019;AC=135;AN=2184 GT:DS:GL:BD 0.06181319 0 1 104433826 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104433844 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.5974;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104433873 rs111473322 TA T 25999 PASS INDEL;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.2353;AVGPOST=0.9975;RSQ=0.9952;ERATE=0.0004;THETA=0.0003;AC=514;AN=2184 GT:DS:GL:BD 0.23534799 0 1 104434073 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9744;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104434118 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8156;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104434216 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0026;AVGPOST=0.9986;RSQ=0.7893;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104434261 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6077;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104434300 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0057;AVGPOST=0.9996;RSQ=0.9759;ERATE=0.0002;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104434305 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0298;AVGPOST=0.9998;RSQ=0.9972;ERATE=0.0002;THETA=0.0004;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 104434337 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0181;AVGPOST=0.9992;RSQ=0.9789;ERATE=0.0004;THETA=0.0003;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 104434382 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0038;AVGPOST=0.9989;RSQ=0.8555;ERATE=0.0004;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104434412 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.666;LDAF=0.0058;AVGPOST=0.9968;RSQ=0.7747;ERATE=0.0004;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104434430 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104434494 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3635;AVGPOST=0.9947;RSQ=0.9913;ERATE=0.0006;THETA=0.0004;AC=795;AN=2184 GT:DS:GL:BD 0.36401099 0 1 104434495 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4958;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104434571 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4794;AVGPOST=0.9952;RSQ=0.9925;ERATE=0.0007;THETA=0.0010;AC=1050;AN=2184 GT:DS:GL:BD 0.48076922 0 1 104434584 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6865;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104434710 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0044;AVGPOST=0.9994;RSQ=0.9432;ERATE=0.0004;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104434863 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7946;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104434962 . TC T 51 PASS INDEL;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0032;AVGPOST=0.9956;RSQ=0.4769;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104434985 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0075;AVGPOST=0.9994;RSQ=0.9680;ERATE=0.0002;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104435087 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0244;AVGPOST=0.9997;RSQ=0.9939;ERATE=0.0003;THETA=0.0002;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 104435096 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8185;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104435185 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.560;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4744;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104435283 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0577;AVGPOST=0.9959;RSQ=0.9669;ERATE=0.0003;THETA=0.0004;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 104435373 . T TA 212 PASS INDEL;BAVGPOST=0.963;BRSQ=0.490;LDAF=0.0658;AVGPOST=0.9126;RSQ=0.4396;ERATE=0.0146;THETA=0.0003;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 104435419 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.812;LDAF=0.0118;AVGPOST=0.9963;RSQ=0.8756;ERATE=0.0006;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104435420 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0019;AVGPOST=0.9964;RSQ=0.2506;ERATE=0.0005;THETA=0.0009;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104435608 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3620;AVGPOST=0.9984;RSQ=0.9972;ERATE=0.0003;THETA=0.0008;AC=791;AN=2184 GT:DS:GL:BD 0.36217949 0 1 104435764 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0182;AVGPOST=0.9991;RSQ=0.9768;ERATE=0.0004;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 104435847 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104435884 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.382;LDAF=0.9857;AVGPOST=0.9789;RSQ=0.4245;ERATE=0.0038;THETA=0.0005;AC=2166;AN=2184 GT:DS:GL:BD 0.99175823 1 1 104435922 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.700;LDAF=0.0035;AVGPOST=0.9952;RSQ=0.4764;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104435966 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0041;AVGPOST=0.9966;RSQ=0.6297;ERATE=0.0012;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104436046 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.957;LDAF=0.3564;AVGPOST=0.9857;RSQ=0.9763;ERATE=0.0018;THETA=0.0004;AC=783;AN=2184 GT:DS:GL:BD 0.35851648 0 1 104436059 . T TA 5261 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0244;AVGPOST=0.9997;RSQ=0.9948;ERATE=0.0002;THETA=0.0005;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 104436204 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3670;AVGPOST=0.9969;RSQ=0.9948;ERATE=0.0005;THETA=0.0003;AC=801;AN=2184 GT:DS:GL:BD 0.36675823 0 1 104436310 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7295;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104436321 rs11451321 G GT 1516 PASS INDEL;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0159;AVGPOST=0.9992;RSQ=0.9797;ERATE=0.0002;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 104436372 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0171;AVGPOST=0.9984;RSQ=0.9671;ERATE=0.0003;THETA=0.0029;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 104436459 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7393;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104436545 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5491;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104436745 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=0.9998;RSQ=0.9537;ERATE=0.0006;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104436856 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9375;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104436931 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5830;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104436977 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0155;AVGPOST=0.9992;RSQ=0.9781;ERATE=0.0003;THETA=0.0004;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 104437075 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0142;AVGPOST=0.9989;RSQ=0.9641;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104437085 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.943;LDAF=0.0168;AVGPOST=0.9920;RSQ=0.8249;ERATE=0.0006;THETA=0.0009;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104437200 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0037;AVGPOST=0.9993;RSQ=0.9185;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104437302 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6524;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104437321 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3613;AVGPOST=0.9987;RSQ=0.9975;ERATE=0.0003;THETA=0.0002;AC=789;AN=2184 GT:DS:GL:BD 0.36126372 0 1 104437334 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.989;LDAF=0.3078;AVGPOST=0.9935;RSQ=0.9883;ERATE=0.0008;THETA=0.0006;AC=673;AN=2184 GT:DS:GL:BD 0.30815017 0 1 104437410 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.955;LDAF=0.0173;AVGPOST=0.9987;RSQ=0.9691;ERATE=0.0003;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 104437490 . AG A 847 PASS INDEL;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0105;AVGPOST=0.9978;RSQ=0.9286;ERATE=0.0005;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104437506 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.979;LDAF=0.4718;AVGPOST=0.9869;RSQ=0.9812;ERATE=0.0029;THETA=0.0006;AC=1036;AN=2184 GT:DS:GL:BD 0.47435898 0 1 104437580 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0075;AVGPOST=0.9985;RSQ=0.9139;ERATE=0.0002;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104437658 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7748;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104437710 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104437730 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0002;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104437819 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104437820 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104437893 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104437952 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0589;AVGPOST=0.9999;RSQ=0.9989;ERATE=0.0002;THETA=0.0005;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 104437999 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0124;AVGPOST=1.0000;RSQ=0.9983;ERATE=0.0002;THETA=0.0008;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104438014 . T TG 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5764;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104438061 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0372;AVGPOST=0.9997;RSQ=0.9962;ERATE=0.0003;THETA=0.0005;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 104438091 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7918;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104438146 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0254;AVGPOST=0.9995;RSQ=0.9926;ERATE=0.0002;THETA=0.0038;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 104438158 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104438194 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9163;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104438237 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0040;AVGPOST=0.9971;RSQ=0.7002;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104438534 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.748;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7142;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104438584 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4941;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104438663 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0032;AVGPOST=0.9984;RSQ=0.7914;ERATE=0.0005;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104438719 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.718;LDAF=0.0031;AVGPOST=0.9980;RSQ=0.7611;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104438799 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5598;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104438806 . AAC A 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.719;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4898;ERATE=0.0004;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104438819 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.990;LDAF=0.3583;AVGPOST=0.9957;RSQ=0.9937;ERATE=0.0003;THETA=0.0010;AC=781;AN=2184 GT:DS:GL:BD 0.35760072 0 1 104438895 rs71655768 GATT G 1696 PASS INDEL;BAVGPOST=0.998;BRSQ=0.939;LDAF=0.0211;AVGPOST=0.9935;RSQ=0.8910;ERATE=0.0010;THETA=0.0003;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 104438949 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0147;AVGPOST=0.9970;RSQ=0.9140;ERATE=0.0004;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104439023 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.722;LDAF=0.0065;AVGPOST=0.9925;RSQ=0.5291;ERATE=0.0009;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104439083 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.640;LDAF=0.0051;AVGPOST=0.9982;RSQ=0.8363;ERATE=0.0005;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104439211 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.793;LDAF=0.0089;AVGPOST=0.9973;RSQ=0.8748;ERATE=0.0005;THETA=0.0008;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104439278 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0171;AVGPOST=0.9976;RSQ=0.9515;ERATE=0.0004;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 104439312 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7871;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104439379 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5224;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104439407 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0517;AVGPOST=0.9998;RSQ=0.9979;ERATE=0.0003;THETA=0.0004;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 104439549 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6792;AVGPOST=0.9991;RSQ=0.9982;ERATE=0.0003;THETA=0.0004;AC=1484;AN=2184 GT:DS:GL:BD 0.67948717 1 1 104439676 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5253;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104439679 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1243;AVGPOST=0.9986;RSQ=0.9947;ERATE=0.0004;THETA=0.0004;AC=269;AN=2184 GT:DS:GL:BD 0.12316850 0 1 104439689 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5569;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104439731 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9265;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104439739 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.967;LDAF=0.0694;AVGPOST=0.9965;RSQ=0.9823;ERATE=0.0004;THETA=0.0003;AC=151;AN=2184 GT:DS:GL:BD 0.06913920 0 1 104439744 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6803;AVGPOST=0.9980;RSQ=0.9961;ERATE=0.0005;THETA=0.0005;AC=1485;AN=2184 GT:DS:GL:BD 0.67994505 1 1 104439774 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6804;AVGPOST=0.9985;RSQ=0.9976;ERATE=0.0005;THETA=0.0004;AC=1487;AN=2184 GT:DS:GL:BD 0.68086082 1 1 104439842 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104439879 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1241;AVGPOST=0.9994;RSQ=0.9974;ERATE=0.0005;THETA=0.0004;AC=269;AN=2184 GT:DS:GL:BD 0.12316850 0 1 104440037 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8262;ERATE=0.0005;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104440095 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5515;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104440128 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5357;AVGPOST=0.9963;RSQ=0.9949;ERATE=0.0004;THETA=0.0003;AC=1169;AN=2184 GT:DS:GL:BD 0.53525639 1 1 104440160 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9905;AVGPOST=0.9994;RSQ=0.9712;ERATE=0.0003;THETA=0.0003;AC=2164;AN=2184 GT:DS:GL:BD 0.99084246 1 1 104440193 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.825;LDAF=0.0051;AVGPOST=0.9974;RSQ=0.8111;ERATE=0.0004;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104440277 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.985;LDAF=0.0572;AVGPOST=0.9974;RSQ=0.9829;ERATE=0.0003;THETA=0.0003;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 104440298 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0049;AVGPOST=0.9989;RSQ=0.8955;ERATE=0.0004;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104440412 . TA T 51 PASS INDEL;BAVGPOST=1.000;BRSQ=0.712;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4371;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104440429 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.824;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8586;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104440500 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1238;AVGPOST=0.9995;RSQ=0.9981;ERATE=0.0003;THETA=0.0003;AC=269;AN=2184 GT:DS:GL:BD 0.12316850 0 1 104440581 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6016;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104440648 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9773;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104440709 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8845;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104440780 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6043;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104440827 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1242;AVGPOST=0.9988;RSQ=0.9961;ERATE=0.0003;THETA=0.0002;AC=269;AN=2184 GT:DS:GL:BD 0.12316850 0 1 104440832 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.761;LDAF=0.0032;AVGPOST=0.9977;RSQ=0.7038;ERATE=0.0006;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104440926 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.6640;AVGPOST=0.9976;RSQ=0.9955;ERATE=0.0009;THETA=0.0007;AC=1452;AN=2184 GT:DS:GL:BD 0.66483516 1 1 104440942 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7189;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104441039 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5000;AVGPOST=0.9980;RSQ=0.9972;ERATE=0.0004;THETA=0.0005;AC=1091;AN=2184 GT:DS:GL:BD 0.49954212 0 1 104441060 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.8030;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104441080 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6645;AVGPOST=0.9995;RSQ=0.9991;ERATE=0.0003;THETA=0.0005;AC=1452;AN=2184 GT:DS:GL:BD 0.66483516 1 1 104441086 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0816;AVGPOST=0.9993;RSQ=0.9960;ERATE=0.0004;THETA=0.0011;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 104441216 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0009;AVGPOST=0.9988;RSQ=0.4099;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104441249 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0029;AVGPOST=0.9985;RSQ=0.7818;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104441253 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8010;AVGPOST=0.9993;RSQ=0.9981;ERATE=0.0005;THETA=0.0025;AC=1749;AN=2184 GT:DS:GL:BD 0.80082417 1 1 104441384 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0008;AVGPOST=0.9988;RSQ=0.4572;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104441397 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6651;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104441409 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6496;AVGPOST=0.9987;RSQ=0.9979;ERATE=0.0004;THETA=0.0003;AC=1418;AN=2184 GT:DS:GL:BD 0.64926738 1 1 104441435 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8031;AVGPOST=0.9990;RSQ=0.9974;ERATE=0.0004;THETA=0.0005;AC=1753;AN=2184 GT:DS:GL:BD 0.80265570 1 1 104441451 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.8026;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104441471 rs113457149 GCA G 378 PASS INDEL;BAVGPOST=0.974;BRSQ=0.651;LDAF=0.0637;AVGPOST=0.9320;RSQ=0.5369;ERATE=0.0270;THETA=0.0003;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 104441500 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9905;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104441580 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0136;AVGPOST=0.9993;RSQ=0.9852;ERATE=0.0003;THETA=0.0002;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104441662 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0043;AVGPOST=0.9963;RSQ=0.6653;ERATE=0.0005;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104441727 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.652;LDAF=0.0056;AVGPOST=0.9972;RSQ=0.8188;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104441807 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.749;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4768;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104441948 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1258;AVGPOST=0.9975;RSQ=0.9917;ERATE=0.0008;THETA=0.0006;AC=272;AN=2184 GT:DS:GL:BD 0.12454212 0 1 104441986 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0857;AVGPOST=0.9995;RSQ=0.9969;ERATE=0.0004;THETA=0.0004;AC=187;AN=2184 GT:DS:GL:BD 0.08562271 0 1 104442080 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1229;AVGPOST=0.9999;RSQ=0.9994;ERATE=0.0003;THETA=0.0018;AC=267;AN=2184 GT:DS:GL:BD 0.12225275 0 1 104442161 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8890;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104442162 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104442267 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104442309 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104442340 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=1.0000;RSQ=0.9931;ERATE=0.0003;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104442373 . CCTT C 237 PASS INDEL;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0037;AVGPOST=0.9972;RSQ=0.7208;ERATE=0.0006;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104442382 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0721;AVGPOST=0.9993;RSQ=0.9942;ERATE=0.0003;THETA=0.0005;AC=155;AN=2184 GT:DS:GL:BD 0.07097070 0 1 104442420 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104442449 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0055;AVGPOST=1.0000;RSQ=0.9960;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104442466 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104442471 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6738;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104442586 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104442714 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8923;ERATE=0.0012;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104442796 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9752;ERATE=0.0005;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104442825 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104442871 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104442882 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104443113 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9910;ERATE=0.0003;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104443114 . TCC T 1242 PASS INDEL;BAVGPOST=0.958;BRSQ=0.780;LDAF=0.1091;AVGPOST=0.9809;RSQ=0.9295;ERATE=0.0007;THETA=0.0003;AC=251;AN=2184 GT:DS:GL:BD 0.11492674 0 1 104443146 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1239;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=269;AN=2184 GT:DS:GL:BD 0.12316850 0 1 104443147 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1239;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0014;AC=269;AN=2184 GT:DS:GL:BD 0.12316850 0 1 104443150 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9313;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104443219 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0471;AVGPOST=0.9999;RSQ=0.9988;ERATE=0.0003;THETA=0.0003;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 104443221 . CT C 8443 PASS INDEL;BAVGPOST=0.896;BRSQ=0.809;LDAF=0.5624;AVGPOST=0.8332;RSQ=0.7438;ERATE=0.0468;THETA=0.0004;AC=1286;AN=2184 GT:DS:GL:BD 0.58882785 1 1 104443289 rs56401393 TC T 51629 PASS INDEL;BAVGPOST=0.983;BRSQ=0.969;LDAF=0.6748;AVGPOST=0.9895;RSQ=0.9814;ERATE=0.0015;THETA=0.0003;AC=1480;AN=2184 GT:DS:GL:BD 0.67765570 1 1 104443290 . CT C 7727 PASS INDEL;BAVGPOST=0.900;BRSQ=0.821;LDAF=0.5709;AVGPOST=0.8505;RSQ=0.7775;ERATE=0.0248;THETA=0.0007;AC=1312;AN=2184 GT:DS:GL:BD 0.60073262 1 1 104443293 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104443385 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0037;AVGPOST=0.9997;RSQ=0.9641;ERATE=0.0009;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104443393 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1239;AVGPOST=0.9997;RSQ=0.9990;ERATE=0.0003;THETA=0.0003;AC=269;AN=2184 GT:DS:GL:BD 0.12316850 0 1 104443401 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.844;LDAF=0.0310;AVGPOST=0.9851;RSQ=0.8287;ERATE=0.0102;THETA=0.0006;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 104443407 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5993;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104443561 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0497;AVGPOST=0.9993;RSQ=0.9935;ERATE=0.0004;THETA=0.0003;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 104443727 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0092;AVGPOST=0.9990;RSQ=0.9612;ERATE=0.0003;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104443821 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104443860 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6788;AVGPOST=0.9984;RSQ=0.9969;ERATE=0.0004;THETA=0.0005;AC=1484;AN=2184 GT:DS:GL:BD 0.67948717 1 1 104443977 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1242;AVGPOST=0.9988;RSQ=0.9954;ERATE=0.0003;THETA=0.0004;AC=269;AN=2184 GT:DS:GL:BD 0.12316850 0 1 104443996 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0729;AVGPOST=0.9991;RSQ=0.9946;ERATE=0.0004;THETA=0.0006;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 104443998 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0512;AVGPOST=0.9970;RSQ=0.9797;ERATE=0.0004;THETA=0.0004;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 104444045 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.747;LDAF=0.0087;AVGPOST=0.9956;RSQ=0.7989;ERATE=0.0010;THETA=0.0019;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104444168 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0036;AVGPOST=0.9982;RSQ=0.8147;ERATE=0.0003;THETA=0.0024;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104444282 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.6913;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104444363 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104444375 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.7419;AVGPOST=0.9974;RSQ=0.9953;ERATE=0.0005;THETA=0.0011;AC=1619;AN=2184 GT:DS:GL:BD 0.74130034 1 1 104444438 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0030;AVGPOST=0.9984;RSQ=0.7895;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104444469 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0029;AVGPOST=0.9979;RSQ=0.7137;ERATE=0.0007;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104444628 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.576;LDAF=0.0029;AVGPOST=0.9950;RSQ=0.2721;ERATE=0.0010;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104444850 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.973;LDAF=0.7266;AVGPOST=0.9812;RSQ=0.9657;ERATE=0.0033;THETA=0.0006;AC=1595;AN=2184 GT:DS:GL:BD 0.73031133 1 1 104444891 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.655;LDAF=0.0281;AVGPOST=0.9619;RSQ=0.4782;ERATE=0.0097;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104444894 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0105;AVGPOST=0.9998;RSQ=0.9918;ERATE=0.0003;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104444937 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0120;AVGPOST=0.9996;RSQ=0.9872;ERATE=0.0003;THETA=0.0029;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104444949 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.8564;AVGPOST=0.9979;RSQ=0.9936;ERATE=0.0007;THETA=0.0004;AC=1870;AN=2184 GT:DS:GL:BD 0.85622710 1 1 104444953 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9544;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104444961 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.859;LDAF=0.0084;AVGPOST=0.9976;RSQ=0.8937;ERATE=0.0005;THETA=0.0009;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104444962 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104445195 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0109;AVGPOST=0.9991;RSQ=0.9649;ERATE=0.0003;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104445268 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104445468 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.725;LDAF=0.0055;AVGPOST=0.9965;RSQ=0.7518;ERATE=0.0014;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104445585 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5878;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104445646 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.6031;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104445666 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8570;AVGPOST=0.9990;RSQ=0.9969;ERATE=0.0004;THETA=0.0004;AC=1872;AN=2184 GT:DS:GL:BD 0.85714287 1 1 104445729 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.828;LDAF=0.0048;AVGPOST=0.9974;RSQ=0.7704;ERATE=0.0005;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104445758 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6850;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104445884 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8841;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104445887 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8339;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104445900 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0873;AVGPOST=0.9984;RSQ=0.9911;ERATE=0.0005;THETA=0.0006;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 104445961 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6570;AVGPOST=0.9979;RSQ=0.9967;ERATE=0.0003;THETA=0.0012;AC=1434;AN=2184 GT:DS:GL:BD 0.65659338 1 1 104446008 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.8338;AVGPOST=0.9987;RSQ=0.9962;ERATE=0.0004;THETA=0.0010;AC=1821;AN=2184 GT:DS:GL:BD 0.83379120 1 1 104446079 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0871;AVGPOST=0.9995;RSQ=0.9974;ERATE=0.0003;THETA=0.0007;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 104446113 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4134;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104446178 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6552;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104446284 . TC T 80 PASS INDEL;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.5411;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104446333 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8303;AVGPOST=0.9987;RSQ=0.9966;ERATE=0.0005;THETA=0.0003;AC=1814;AN=2184 GT:DS:GL:BD 0.83058608 1 1 104446339 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.6551;AVGPOST=0.9938;RSQ=0.9910;ERATE=0.0009;THETA=0.0006;AC=1432;AN=2184 GT:DS:GL:BD 0.65567768 1 1 104446363 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104446476 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8312;AVGPOST=0.9987;RSQ=0.9969;ERATE=0.0004;THETA=0.0003;AC=1815;AN=2184 GT:DS:GL:BD 0.83104396 1 1 104446479 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.608;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7880;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104446480 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7381;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104446728 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0079;AVGPOST=0.9996;RSQ=0.9776;ERATE=0.0003;THETA=0.0010;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104446734 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104446750 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104446859 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8483;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104446925 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0053;AVGPOST=0.9982;RSQ=0.8860;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104446935 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8476;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104446947 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.622;LDAF=0.0028;AVGPOST=0.9968;RSQ=0.5101;ERATE=0.0017;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104446964 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6440;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104446975 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.959;LDAF=0.7177;AVGPOST=0.9612;RSQ=0.9304;ERATE=0.0150;THETA=0.0005;AC=1585;AN=2184 GT:DS:GL:BD 0.72573262 1 1 104447103 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.631;LDAF=0.0196;AVGPOST=0.9755;RSQ=0.4969;ERATE=0.0078;THETA=0.0007;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104447146 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104447152 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0052;AVGPOST=0.9995;RSQ=0.9650;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104447172 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6675;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104447473 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.7230;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104447697 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5409;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104447740 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8298;AVGPOST=0.9975;RSQ=0.9944;ERATE=0.0004;THETA=0.0006;AC=1813;AN=2184 GT:DS:GL:BD 0.83012819 1 1 104447915 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8283;AVGPOST=0.9943;RSQ=0.9859;ERATE=0.0007;THETA=0.0003;AC=1812;AN=2184 GT:DS:GL:BD 0.82967031 1 1 104447925 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0050;AVGPOST=0.9982;RSQ=0.9041;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104448054 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0080;AVGPOST=0.9994;RSQ=0.9688;ERATE=0.0003;THETA=0.0010;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104448087 . GC G 190 PASS INDEL;BAVGPOST=0.991;BRSQ=0.766;LDAF=0.0215;AVGPOST=0.9802;RSQ=0.6318;ERATE=0.0093;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 104448115 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.927;LDAF=0.7709;AVGPOST=0.9395;RSQ=0.8759;ERATE=0.0234;THETA=0.0004;AC=1717;AN=2184 GT:DS:GL:BD 0.78617215 1 1 104448218 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9787;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104448343 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0070;AVGPOST=0.9984;RSQ=0.8986;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104448464 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5536;ERATE=0.0004;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104448535 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0104;AVGPOST=0.9990;RSQ=0.9616;ERATE=0.0003;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104448551 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8985;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104448633 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.900;LDAF=0.8998;AVGPOST=0.9719;RSQ=0.8947;ERATE=0.0040;THETA=0.0003;AC=1971;AN=2184 GT:DS:GL:BD 0.90247256 1 1 104448729 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0042;AVGPOST=0.9979;RSQ=0.8069;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104448736 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9999;RSQ=0.9958;ERATE=0.0003;THETA=0.0008;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104448787 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.6737;AVGPOST=0.9955;RSQ=0.9932;ERATE=0.0006;THETA=0.0007;AC=1471;AN=2184 GT:DS:GL:BD 0.67353481 1 1 104448790 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104448794 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8520;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104448945 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6705;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104449071 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5910;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104449162 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8311;AVGPOST=0.9993;RSQ=0.9982;ERATE=0.0004;THETA=0.0006;AC=1815;AN=2184 GT:DS:GL:BD 0.83104396 1 1 104449208 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104449247 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.982;LDAF=0.8270;AVGPOST=0.9939;RSQ=0.9852;ERATE=0.0007;THETA=0.0011;AC=1809;AN=2184 GT:DS:GL:BD 0.82829672 1 1 104449278 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104449280 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104449308 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=0.9999;RSQ=0.9910;ERATE=0.0003;THETA=0.0010;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104449401 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0014;AVGPOST=0.9986;RSQ=0.6617;ERATE=0.0003;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104449404 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8847;ERATE=0.0018;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104449501 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0049;AVGPOST=0.9982;RSQ=0.8541;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104449609 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7959;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104449692 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.8974;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104449787 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9890;ERATE=0.0003;THETA=0.0025;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104449794 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8084;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104449808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6125;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104449842 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0116;AVGPOST=0.9995;RSQ=0.9792;ERATE=0.0003;THETA=0.0007;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104449847 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0016;AVGPOST=0.9980;RSQ=0.5023;ERATE=0.0007;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104449860 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0024;AVGPOST=0.9987;RSQ=0.7775;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104449945 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0039;AVGPOST=0.9994;RSQ=0.9259;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104449980 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8182;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104449983 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7444;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104450005 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.855;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104450080 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0023;AVGPOST=0.9988;RSQ=0.7982;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104450152 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8116;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104450203 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104450259 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9752;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104450268 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0087;AVGPOST=0.9985;RSQ=0.9320;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104450636 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.949;LDAF=0.0098;AVGPOST=0.9970;RSQ=0.8812;ERATE=0.0004;THETA=0.0013;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104450726 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.984;LDAF=0.7294;AVGPOST=0.9880;RSQ=0.9781;ERATE=0.0007;THETA=0.0004;AC=1600;AN=2184 GT:DS:GL:BD 0.73260075 1 1 104450746 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6459;ERATE=0.0004;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104450770 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6380;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104450895 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6851;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104450915 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0052;AVGPOST=0.9987;RSQ=0.9047;ERATE=0.0003;THETA=0.0015;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104450944 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.979;LDAF=0.1548;AVGPOST=0.9965;RSQ=0.9904;ERATE=0.0003;THETA=0.0005;AC=340;AN=2184 GT:DS:GL:BD 0.15567766 0 1 104450956 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6699;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104450957 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.979;LDAF=0.1551;AVGPOST=0.9971;RSQ=0.9918;ERATE=0.0003;THETA=0.0003;AC=340;AN=2184 GT:DS:GL:BD 0.15567766 0 1 104450960 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0029;AVGPOST=0.9988;RSQ=0.8277;ERATE=0.0005;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104450966 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7907;ERATE=0.0003;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104450987 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5018;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104451077 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.9016;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104451131 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1556;AVGPOST=0.9986;RSQ=0.9964;ERATE=0.0004;THETA=0.0004;AC=340;AN=2184 GT:DS:GL:BD 0.15567766 0 1 104451138 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104451231 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.790;LDAF=0.0157;AVGPOST=0.9942;RSQ=0.8633;ERATE=0.0003;THETA=0.0078;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104451315 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1874;AVGPOST=0.9952;RSQ=0.9877;ERATE=0.0007;THETA=0.0007;AC=409;AN=2184 GT:DS:GL:BD 0.18727106 0 1 104451340 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.962;LDAF=0.7154;AVGPOST=0.9625;RSQ=0.9338;ERATE=0.0049;THETA=0.0093;AC=1578;AN=2184 GT:DS:GL:BD 0.72252744 1 1 104451386 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0129;AVGPOST=0.9977;RSQ=0.9280;ERATE=0.0006;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104451417 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.972;LDAF=0.1821;AVGPOST=0.9948;RSQ=0.9875;ERATE=0.0006;THETA=0.0064;AC=398;AN=2184 GT:DS:GL:BD 0.18223444 0 1 104451591 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0064;AVGPOST=0.9991;RSQ=0.9435;ERATE=0.0003;THETA=0.0063;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104451625 rs71782521 GTT G 5803 PASS INDEL;BAVGPOST=0.913;BRSQ=0.831;LDAF=0.2232;AVGPOST=0.9229;RSQ=0.8426;ERATE=0.0012;THETA=0.0004;AC=489;AN=2184 GT:DS:GL:BD 0.22390109 0 1 104451698 rs11367940 G GT 729 PASS INDEL;BAVGPOST=0.492;BRSQ=0.095;LDAF=0.4122;AVGPOST=0.6776;RSQ=0.4414;ERATE=0.0136;THETA=0.0006;AC=719;AN=2184 GT:DS:GL:BD 0.32921246 0 1 104451704 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.648;LDAF=0.0032;AVGPOST=0.9965;RSQ=0.6050;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104451812 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0092;AVGPOST=0.9938;RSQ=0.7237;ERATE=0.0009;THETA=0.0009;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104451862 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.707;LDAF=0.0585;AVGPOST=0.9760;RSQ=0.8304;ERATE=0.0007;THETA=0.0008;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 104451874 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.903;BRSQ=0.654;LDAF=0.8061;AVGPOST=0.8490;RSQ=0.6199;ERATE=0.0227;THETA=0.0004;AC=1854;AN=2184 GT:DS:GL:BD 0.84890109 1 1 104451915 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.465;LDAF=0.0066;AVGPOST=0.9893;RSQ=0.3392;ERATE=0.0012;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104451920 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.576;LDAF=0.0022;AVGPOST=0.9964;RSQ=0.3061;ERATE=0.0008;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104451927 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0041;AVGPOST=0.9980;RSQ=0.7958;ERATE=0.0005;THETA=0.0029;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104451951 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.766;LDAF=0.0043;AVGPOST=0.9958;RSQ=0.5965;ERATE=0.0009;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104451992 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.797;LDAF=0.9560;AVGPOST=0.9737;RSQ=0.7414;ERATE=0.0083;THETA=0.0005;AC=2106;AN=2184 GT:DS:GL:BD 0.96428573 1 1 104452003 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.655;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5553;ERATE=0.0008;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104452004 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0041;AVGPOST=0.9982;RSQ=0.8029;ERATE=0.0015;THETA=0.0014;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104452010 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0030;AVGPOST=0.9980;RSQ=0.7401;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104452013 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.862;LDAF=0.0037;AVGPOST=0.9990;RSQ=0.8980;ERATE=0.0003;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104452092 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.8275;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104452200 . GA G 34018 PASS INDEL;BAVGPOST=0.971;BRSQ=0.956;LDAF=0.4719;AVGPOST=0.9644;RSQ=0.9557;ERATE=0.0048;THETA=0.0005;AC=1036;AN=2184 GT:DS:GL:BD 0.47435898 0 1 104452356 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.969;LDAF=0.7067;AVGPOST=0.9802;RSQ=0.9685;ERATE=0.0008;THETA=0.0005;AC=1549;AN=2184 GT:DS:GL:BD 0.70924908 1 1 104452357 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0034;AVGPOST=0.9986;RSQ=0.8436;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104452367 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8366;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104452441 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7258;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104452534 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5351;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104452538 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0055;AVGPOST=0.9991;RSQ=0.9376;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104452598 . TA T 7 PASS INDEL;BAVGPOST=0.999;BRSQ=0.676;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5717;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104452638 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7571;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104452697 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.862;LDAF=0.0116;AVGPOST=0.9948;RSQ=0.8386;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104452699 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0370;AVGPOST=1.0000;RSQ=0.9996;ERATE=0.0003;THETA=0.0015;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 104452723 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6151;ERATE=0.0003;THETA=0.0052;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104452786 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0024;AVGPOST=0.9994;RSQ=0.8903;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104452869 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.7375;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104453019 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104453030 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8665;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104453130 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8894;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104453159 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9553;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104453246 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104453281 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1933;AVGPOST=0.9992;RSQ=0.9979;ERATE=0.0003;THETA=0.0006;AC=423;AN=2184 GT:DS:GL:BD 0.19368131 0 1 104453356 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9426;ERATE=0.0003;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104453409 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6995;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104453553 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8342;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104453633 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7177;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104453687 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0038;AVGPOST=0.9995;RSQ=0.9398;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104453703 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.755;LDAF=0.0023;AVGPOST=0.9994;RSQ=0.8936;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104453747 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.7223;AVGPOST=0.9972;RSQ=0.9947;ERATE=0.0003;THETA=0.0006;AC=1575;AN=2184 GT:DS:GL:BD 0.72115386 1 1 104453891 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.6395;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104454061 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104454066 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1911;AVGPOST=0.9992;RSQ=0.9979;ERATE=0.0003;THETA=0.0005;AC=418;AN=2184 GT:DS:GL:BD 0.19139194 0 1 104454110 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104454133 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0080;AVGPOST=0.9985;RSQ=0.9179;ERATE=0.0004;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104454154 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5902;AVGPOST=0.9970;RSQ=0.9950;ERATE=0.0005;THETA=0.0091;AC=1289;AN=2184 GT:DS:GL:BD 0.59020144 1 1 104454195 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104454228 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0078;AVGPOST=0.9965;RSQ=0.8164;ERATE=0.0015;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104454311 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104454332 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9470;ERATE=0.0003;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104454342 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104454369 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9562;ERATE=0.0003;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104454370 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0085;AVGPOST=0.9967;RSQ=0.8570;ERATE=0.0003;THETA=0.0010;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104454443 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0125;AVGPOST=0.9997;RSQ=0.9893;ERATE=0.0004;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104454526 . G GA 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.772;LDAF=0.0023;AVGPOST=0.9986;RSQ=0.7618;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104454543 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9470;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104454589 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104454594 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0132;AVGPOST=0.9991;RSQ=0.9698;ERATE=0.0004;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104454648 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0178;AVGPOST=0.9991;RSQ=0.9818;ERATE=0.0004;THETA=0.0003;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 104454649 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.793;LDAF=0.0121;AVGPOST=0.9951;RSQ=0.8378;ERATE=0.0005;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104454728 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0022;AVGPOST=0.9988;RSQ=0.7665;ERATE=0.0003;THETA=0.0043;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104454763 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0022;AVGPOST=0.9994;RSQ=0.8698;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104454826 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7096;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104454930 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9640;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104455045 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8792;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104455046 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.6136;ERATE=0.0006;THETA=0.0086;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104455069 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0125;AVGPOST=0.9995;RSQ=0.9828;ERATE=0.0003;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104455098 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.9327;ERATE=0.0003;THETA=0.0056;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104455124 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0642;AVGPOST=0.9975;RSQ=0.9842;ERATE=0.0003;THETA=0.0004;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 104455216 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0098;AVGPOST=0.9996;RSQ=0.9817;ERATE=0.0003;THETA=0.0010;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104455286 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.7521;AVGPOST=0.9977;RSQ=0.9960;ERATE=0.0003;THETA=0.0003;AC=1644;AN=2184 GT:DS:GL:BD 0.75274724 1 1 104455354 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7666;AVGPOST=0.9959;RSQ=0.9924;ERATE=0.0005;THETA=0.0011;AC=1675;AN=2184 GT:DS:GL:BD 0.76694137 1 1 104455498 . G GA 207 PASS INDEL;BAVGPOST=0.998;BRSQ=0.840;LDAF=0.0054;AVGPOST=0.9960;RSQ=0.7156;ERATE=0.0005;THETA=0.0027;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104455579 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0069;AVGPOST=0.9989;RSQ=0.9476;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104455598 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.5771;AVGPOST=0.9949;RSQ=0.9922;ERATE=0.0009;THETA=0.0004;AC=1261;AN=2184 GT:DS:GL:BD 0.57738096 1 1 104455607 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8703;ERATE=0.0003;THETA=0.0064;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104455734 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104455765 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0066;AVGPOST=0.9988;RSQ=0.9324;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104455807 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6519;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104455808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8911;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104455952 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0167;AVGPOST=0.9995;RSQ=0.9875;ERATE=0.0003;THETA=0.0023;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 104456003 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0091;AVGPOST=0.9992;RSQ=0.9642;ERATE=0.0003;THETA=0.0009;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104456274 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104456283 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6059;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104456316 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9721;ERATE=0.0003;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104456404 rs111284629 TCTC T 70 PASS INDEL;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5534;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104456591 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5617;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104456642 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.810;LDAF=0.0050;AVGPOST=0.9984;RSQ=0.8760;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104456735 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0125;AVGPOST=0.9997;RSQ=0.9896;ERATE=0.0003;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104456737 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5705;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104456798 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104456815 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8383;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104456849 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.7064;ERATE=0.0003;THETA=0.0020;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104456886 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104457131 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104457156 . GA G 427 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9191;ERATE=0.0005;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104457224 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.823;LDAF=0.0053;AVGPOST=0.9988;RSQ=0.9020;ERATE=0.0005;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104457249 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9555;ERATE=0.0003;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104457273 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8016;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104457400 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0131;AVGPOST=0.9993;RSQ=0.9760;ERATE=0.0003;THETA=0.0007;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104457426 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8162;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104457454 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9307;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104457503 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7819;ERATE=0.0003;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104457578 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0159;AVGPOST=0.9995;RSQ=0.9870;ERATE=0.0003;THETA=0.0009;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 104457781 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8646;ERATE=0.0007;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104457785 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0017;AVGPOST=0.9987;RSQ=0.7327;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104457831 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7682;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104457931 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8061;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104458019 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5434;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104458059 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0099;AVGPOST=0.9994;RSQ=0.9734;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104458079 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8183;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104458212 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0046;AVGPOST=0.9991;RSQ=0.9077;ERATE=0.0004;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104458223 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0056;AVGPOST=0.9995;RSQ=0.9609;ERATE=0.0004;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104458226 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0029;AVGPOST=0.9969;RSQ=0.6524;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104458262 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6894;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104458462 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9824;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104458544 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0022;AVGPOST=0.9989;RSQ=0.8079;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104458565 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0075;AVGPOST=0.9995;RSQ=0.9676;ERATE=0.0004;THETA=0.0013;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104458603 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104458641 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8854;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104458694 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5548;AVGPOST=0.9979;RSQ=0.9967;ERATE=0.0005;THETA=0.0027;AC=1214;AN=2184 GT:DS:GL:BD 0.55586082 1 1 104458731 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8497;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104458770 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0044;AVGPOST=0.9969;RSQ=0.7177;ERATE=0.0008;THETA=0.0043;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104458778 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6764;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104458782 . C CA 7087 PASS INDEL;BAVGPOST=0.914;BRSQ=0.839;LDAF=0.3804;AVGPOST=0.8662;RSQ=0.7980;ERATE=0.0198;THETA=0.0013;AC=845;AN=2184 GT:DS:GL:BD 0.38690478 0 1 104458799 rs71127347 A AC 44788 PASS INDEL;BAVGPOST=0.971;BRSQ=0.962;LDAF=0.5347;AVGPOST=0.9879;RSQ=0.9835;ERATE=0.0008;THETA=0.0004;AC=1172;AN=2184 GT:DS:GL:BD 0.53663003 1 1 104458800 . C CA 6301 PASS INDEL;BAVGPOST=0.911;BRSQ=0.834;LDAF=0.3772;AVGPOST=0.8738;RSQ=0.8125;ERATE=0.0140;THETA=0.0004;AC=846;AN=2184 GT:DS:GL:BD 0.38736263 0 1 104458802 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5143;ERATE=0.0003;THETA=0.0053;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104458895 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104458918 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.637;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6633;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104458977 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.7051;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104459006 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.775;LDAF=0.0055;AVGPOST=0.9975;RSQ=0.8228;ERATE=0.0005;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104459100 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104459238 . GCTGT G 395 PASS INDEL;BAVGPOST=0.999;BRSQ=0.917;LDAF=0.0039;AVGPOST=0.9986;RSQ=0.8623;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104459255 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2831;AVGPOST=0.9967;RSQ=0.9942;ERATE=0.0006;THETA=0.0005;AC=618;AN=2184 GT:DS:GL:BD 0.28296703 0 1 104459299 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0153;AVGPOST=0.9987;RSQ=0.9663;ERATE=0.0004;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104459343 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0686;AVGPOST=0.9973;RSQ=0.9841;ERATE=0.0003;THETA=0.0002;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 104459377 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.788;LDAF=0.0043;AVGPOST=0.9984;RSQ=0.8525;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104459435 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4684;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104459541 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.712;LDAF=0.0386;AVGPOST=0.9813;RSQ=0.8075;ERATE=0.0005;THETA=0.0006;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 104459585 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5826;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104459796 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5155;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104459797 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104459928 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.9959;AVGPOST=0.9972;RSQ=0.7468;ERATE=0.0005;THETA=0.0005;AC=2178;AN=2184 GT:DS:GL:BD 0.99725276 1 1 104459991 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8061;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104459993 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0586;AVGPOST=0.9998;RSQ=0.9981;ERATE=0.0003;THETA=0.0008;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 104460025 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0281;AVGPOST=0.9966;RSQ=0.9522;ERATE=0.0006;THETA=0.0006;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 104460333 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4294;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104460346 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.940;LDAF=0.2975;AVGPOST=0.9764;RSQ=0.9630;ERATE=0.0028;THETA=0.0005;AC=656;AN=2184 GT:DS:GL:BD 0.30036631 0 1 104460352 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104460435 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1670;AVGPOST=0.9986;RSQ=0.9955;ERATE=0.0003;THETA=0.0003;AC=365;AN=2184 GT:DS:GL:BD 0.16712454 0 1 104460591 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.5714;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104460603 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104460784 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8538;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104460826 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0306;AVGPOST=0.9997;RSQ=0.9956;ERATE=0.0003;THETA=0.0005;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 104460836 rs35288127 T TA 2993 PASS INDEL;BAVGPOST=0.994;BRSQ=0.953;LDAF=0.0673;AVGPOST=0.9864;RSQ=0.9244;ERATE=0.0024;THETA=0.0008;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 104460843 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0020;AVGPOST=0.9993;RSQ=0.8494;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104460904 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.979;LDAF=0.0482;AVGPOST=0.9990;RSQ=0.9913;ERATE=0.0003;THETA=0.0005;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 104461059 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7416;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104461139 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6525;ERATE=0.0003;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104461151 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0111;AVGPOST=0.9988;RSQ=0.9556;ERATE=0.0003;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104461165 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104461220 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1078;AVGPOST=0.9992;RSQ=0.9965;ERATE=0.0003;THETA=0.0005;AC=236;AN=2184 GT:DS:GL:BD 0.10805861 0 1 104461258 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0083;AVGPOST=0.9999;RSQ=0.9920;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104461273 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104461311 MERGED_DEL_2_6524 TGTGTGCAGAGTGGTAGAGTCCTTCCTGCTCTGCTCTAAAACCCTAGCCATGGAAAATCCTTTCTTCTTCTCCTCAGAGTGCCAACAGTGGCACTGGGGCTCTCTGCTGGGCTGGCAGAGAGGAGTGGATATGTGGAAGTCTTTCTTCCCGAATCTTCTCTTTATAGAGGACTGGTTTAAAACATGTCAT TAGACTCATGAAT . . SV;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0040;AVGPOST=0.9988;RSQ=0.8869;ERATE=0.0004;THETA=0.0008;CIEND=-18;32;CIPOS=-25;32;END=184403495;HOMLEN=1;HOMSEQ=G;SOURCE=EMBLdelly_184402320_184403496;Ge GT:DS:GL:BD 0.00366300 0 1 104461364 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.7214;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104461366 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0074;AVGPOST=0.9988;RSQ=0.9288;ERATE=0.0004;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104461428 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0157;AVGPOST=0.9995;RSQ=0.9843;ERATE=0.0003;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 104461528 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1633;AVGPOST=0.9979;RSQ=0.9936;ERATE=0.0003;THETA=0.0005;AC=356;AN=2184 GT:DS:GL:BD 0.16300367 0 1 104461552 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0021;AVGPOST=0.9981;RSQ=0.7217;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104461633 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6018;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104461855 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0054;AVGPOST=0.9992;RSQ=0.9427;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104461999 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0064;AVGPOST=0.9979;RSQ=0.8779;ERATE=0.0005;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104462065 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8262;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104462212 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.7709;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104462332 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0037;AVGPOST=0.9997;RSQ=0.9595;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104462336 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6440;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104462566 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0003;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104462578 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0149;AVGPOST=0.9991;RSQ=0.9728;ERATE=0.0004;THETA=0.0008;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104462646 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5019;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104462892 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0028;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104462929 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0023;AVGPOST=0.9992;RSQ=0.8670;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104462940 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104462998 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.7210;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104463051 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0010;AVGPOST=0.9986;RSQ=0.5736;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104463096 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0257;AVGPOST=0.9997;RSQ=0.9952;ERATE=0.0003;THETA=0.0003;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 104463153 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104463168 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7811;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104463369 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7831;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104463525 . GC G 94 PASS INDEL;BAVGPOST=0.999;BRSQ=0.824;LDAF=0.0039;AVGPOST=0.9976;RSQ=0.7781;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104463566 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5851;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104463576 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.879;LDAF=0.0151;AVGPOST=0.9954;RSQ=0.8872;ERATE=0.0003;THETA=0.0004;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 104463608 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.921;LDAF=0.0534;AVGPOST=0.9909;RSQ=0.9345;ERATE=0.0017;THETA=0.0006;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 104463646 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9989;RSQ=0.8889;ERATE=0.0005;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104463695 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.6144;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104463819 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.6213;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104463828 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5432;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104463955 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7033;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104464003 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6777;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104464050 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5712;ERATE=0.0009;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104464108 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4468;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104464214 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5004;ERATE=0.0004;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104464218 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6134;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104464222 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0036;AVGPOST=0.9958;RSQ=0.5978;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104464336 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.844;LDAF=0.0050;AVGPOST=0.9977;RSQ=0.8076;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104464411 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0109;AVGPOST=0.9987;RSQ=0.9468;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104464439 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0490;AVGPOST=0.9984;RSQ=0.9890;ERATE=0.0004;THETA=0.0004;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 104464461 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.991;LDAF=0.3849;AVGPOST=0.9944;RSQ=0.9904;ERATE=0.0028;THETA=0.0003;AC=839;AN=2184 GT:DS:GL:BD 0.38415751 0 1 104464674 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9244;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104464722 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9382;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104464762 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0202;AVGPOST=0.9993;RSQ=0.9844;ERATE=0.0003;THETA=0.0003;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 104464776 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104464802 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0042;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104464900 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104464982 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6674;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104464984 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9224;ERATE=0.0004;THETA=0.0029;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104465014 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1132;AVGPOST=0.9960;RSQ=0.9859;ERATE=0.0003;THETA=0.0029;AC=245;AN=2184 GT:DS:GL:BD 0.11217949 0 1 104465209 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.1112;AVGPOST=0.9973;RSQ=0.9900;ERATE=0.0003;THETA=0.0002;AC=244;AN=2184 GT:DS:GL:BD 0.11172161 0 1 104465275 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.3922;AVGPOST=0.9968;RSQ=0.9944;ERATE=0.0007;THETA=0.0003;AC=854;AN=2184 GT:DS:GL:BD 0.39102563 0 1 104465392 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104465558 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104465628 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104465827 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0413;AVGPOST=0.9987;RSQ=0.9897;ERATE=0.0003;THETA=0.0005;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 104465862 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0008;AVGPOST=0.9998;RSQ=0.8927;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104465885 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.7188;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104465895 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9513;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104465912 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8116;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104465945 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9550;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104466001 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0200;AVGPOST=0.9993;RSQ=0.9852;ERATE=0.0003;THETA=0.0004;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 104466018 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0161;AVGPOST=0.9985;RSQ=0.9592;ERATE=0.0004;THETA=0.0008;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 104466032 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0633;AVGPOST=0.9985;RSQ=0.9905;ERATE=0.0003;THETA=0.0003;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 104466058 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0501;AVGPOST=0.9990;RSQ=0.9932;ERATE=0.0003;THETA=0.0003;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 104466059 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104466115 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104466154 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5092;AVGPOST=0.9982;RSQ=0.9971;ERATE=0.0004;THETA=0.0003;AC=1111;AN=2184 GT:DS:GL:BD 0.50869966 1 1 104466181 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0073;AVGPOST=0.9995;RSQ=0.9715;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104466194 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104466266 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8059;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104466272 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.532;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5195;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104466607 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9843;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104466624 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5736;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104466632 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3952;AVGPOST=0.9984;RSQ=0.9974;ERATE=0.0004;THETA=0.0003;AC=862;AN=2184 GT:DS:GL:BD 0.39468864 0 1 104466652 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6211;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104466686 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.823;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104466761 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6328;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104466849 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104466905 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8982;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104466926 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9882;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104466946 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5730;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104466973 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5619;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104466995 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3907;AVGPOST=0.9937;RSQ=0.9894;ERATE=0.0019;THETA=0.0005;AC=851;AN=2184 GT:DS:GL:BD 0.38965201 0 1 104467009 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0024;AVGPOST=0.9991;RSQ=0.8352;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104467246 . AT A 64 PASS INDEL;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.6274;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104467253 . C CT 132 PASS INDEL;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0026;AVGPOST=0.9967;RSQ=0.5001;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104467311 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7222;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104467323 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0036;AVGPOST=0.9998;RSQ=0.9718;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104467343 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0249;AVGPOST=0.9990;RSQ=0.9835;ERATE=0.0004;THETA=0.0005;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 104467474 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104467504 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104467550 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.2829;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104467579 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0046;AVGPOST=0.9995;RSQ=0.9576;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104467679 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6828;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104467703 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.9381;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104467716 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8338;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104467813 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0046;AVGPOST=0.9979;RSQ=0.8382;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104467849 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8689;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104467918 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0310;AVGPOST=0.9994;RSQ=0.9924;ERATE=0.0003;THETA=0.0004;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 104467988 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7778;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104468026 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0288;AVGPOST=0.9999;RSQ=0.9985;ERATE=0.0003;THETA=0.0003;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 104468034 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6737;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104468090 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104468160 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0032;AVGPOST=0.9973;RSQ=0.6779;ERATE=0.0010;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104468269 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0090;AVGPOST=0.9991;RSQ=0.9602;ERATE=0.0004;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104468333 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0138;AVGPOST=0.9997;RSQ=0.9905;ERATE=0.0003;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104468515 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5926;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104468625 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0056;AVGPOST=0.9997;RSQ=0.9768;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104468690 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104468826 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0207;AVGPOST=0.9981;RSQ=0.9682;ERATE=0.0003;THETA=0.0005;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 104468870 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0061;AVGPOST=0.9990;RSQ=0.9405;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104468909 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0034;AVGPOST=0.9989;RSQ=0.8906;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104468956 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0091;AVGPOST=0.9991;RSQ=0.9622;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104468964 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0051;AVGPOST=0.9988;RSQ=0.9212;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104469113 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7141;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104469138 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6457;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104469188 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.8956;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104469321 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6140;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104469355 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8891;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104469357 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.810;LDAF=0.0023;AVGPOST=0.9992;RSQ=0.8672;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104469483 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.904;LDAF=0.0134;AVGPOST=0.9973;RSQ=0.9244;ERATE=0.0003;THETA=0.0010;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104469507 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.1128;AVGPOST=0.9935;RSQ=0.9730;ERATE=0.0010;THETA=0.0005;AC=247;AN=2184 GT:DS:GL:BD 0.11309524 0 1 104469539 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5449;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104469666 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7431;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104469712 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0040;AVGPOST=0.9990;RSQ=0.8906;ERATE=0.0003;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104469801 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0070;AVGPOST=0.9995;RSQ=0.9776;ERATE=0.0002;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104469803 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5377;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104469902 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0008;AVGPOST=0.9998;RSQ=0.8876;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104469989 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0002;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104469995 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.863;LDAF=0.0034;AVGPOST=0.9991;RSQ=0.8918;ERATE=0.0002;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104470011 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8801;ERATE=0.0003;THETA=0.0064;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104470190 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.703;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6516;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104470203 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0118;AVGPOST=0.9971;RSQ=0.9065;ERATE=0.0002;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104470224 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.9021;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104470269 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8099;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104470311 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1314;AVGPOST=0.9991;RSQ=0.9966;ERATE=0.0003;THETA=0.0006;AC=286;AN=2184 GT:DS:GL:BD 0.13095239 0 1 104470336 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8765;ERATE=0.0002;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104470386 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7129;ERATE=0.0002;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104470401 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.8091;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104470414 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9546;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104470415 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6160;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104470524 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8143;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104470551 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104470615 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1143;AVGPOST=0.9995;RSQ=0.9976;ERATE=0.0003;THETA=0.0004;AC=249;AN=2184 GT:DS:GL:BD 0.11401099 0 1 104470706 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104470736 . TA T 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0046;AVGPOST=0.9979;RSQ=0.8014;ERATE=0.0005;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104470808 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.828;LDAF=0.0064;AVGPOST=0.9978;RSQ=0.8688;ERATE=0.0002;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104470912 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9994;RSQ=0.9598;ERATE=0.0002;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104470972 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9104;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104471049 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0073;AVGPOST=0.9989;RSQ=0.9465;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104471215 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.7943;ERATE=0.0002;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104471232 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0036;AVGPOST=0.9993;RSQ=0.9114;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104471292 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0068;AVGPOST=0.9978;RSQ=0.8783;ERATE=0.0004;THETA=0.0013;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104471317 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.559;LDAF=0.0274;AVGPOST=0.9683;RSQ=0.5433;ERATE=0.0075;THETA=0.0010;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 104471369 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0060;AVGPOST=0.9983;RSQ=0.8854;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104471399 . TG T 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5033;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104471488 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104471493 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8474;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104471503 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7619;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104471539 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0073;AVGPOST=0.9981;RSQ=0.9025;ERATE=0.0003;THETA=0.0016;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104471618 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5682;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104471737 . T TG 15 PASS INDEL;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6451;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104471847 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104471896 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0024;AVGPOST=0.9983;RSQ=0.7335;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104471948 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0193;AVGPOST=0.9979;RSQ=0.9653;ERATE=0.0002;THETA=0.0007;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 104471952 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.7450;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104471954 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5177;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104472011 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0068;AVGPOST=0.9991;RSQ=0.9398;ERATE=0.0002;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104472024 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.958;LDAF=0.0179;AVGPOST=0.9974;RSQ=0.9410;ERATE=0.0004;THETA=0.0003;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 104472103 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7721;ERATE=0.0002;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104472327 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.800;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.5879;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104472349 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4902;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104472365 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1182;AVGPOST=0.9970;RSQ=0.9897;ERATE=0.0004;THETA=0.0005;AC=255;AN=2184 GT:DS:GL:BD 0.11675824 0 1 104472414 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0028;AVGPOST=0.9984;RSQ=0.7729;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104472464 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104472628 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0045;AVGPOST=0.9984;RSQ=0.8362;ERATE=0.0004;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104472691 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.960;LDAF=0.0145;AVGPOST=0.9977;RSQ=0.9442;ERATE=0.0002;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104472734 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.548;LDAF=0.0028;AVGPOST=0.9973;RSQ=0.6691;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104472772 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0044;AVGPOST=0.9985;RSQ=0.8429;ERATE=0.0007;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104472843 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.971;LDAF=0.1298;AVGPOST=0.9958;RSQ=0.9853;ERATE=0.0007;THETA=0.0003;AC=283;AN=2184 GT:DS:GL:BD 0.12957875 0 1 104472863 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.468;LDAF=0.0026;AVGPOST=0.9965;RSQ=0.4532;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104472880 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.537;LDAF=0.0032;AVGPOST=0.9968;RSQ=0.5885;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104472881 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9996;RSQ=0.9476;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104472944 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0072;AVGPOST=0.9975;RSQ=0.8537;ERATE=0.0006;THETA=0.0013;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104472990 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8263;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104473121 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0041;AVGPOST=0.9990;RSQ=0.9145;ERATE=0.0002;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104473146 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1719;AVGPOST=0.9994;RSQ=0.9981;ERATE=0.0003;THETA=0.0003;AC=375;AN=2184 GT:DS:GL:BD 0.17170329 0 1 104473189 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0031;AVGPOST=0.9976;RSQ=0.7233;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104473214 . AG A 36 PASS INDEL;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0037;AVGPOST=0.9944;RSQ=0.4972;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104473295 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7320;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104473306 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0376;AVGPOST=0.9997;RSQ=0.9966;ERATE=0.0003;THETA=0.0003;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 104473341 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1142;AVGPOST=0.9991;RSQ=0.9964;ERATE=0.0002;THETA=0.0004;AC=249;AN=2184 GT:DS:GL:BD 0.11401099 0 1 104473501 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0025;AVGPOST=0.9977;RSQ=0.5980;ERATE=0.0007;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104473641 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.870;LDAF=0.0058;AVGPOST=0.9975;RSQ=0.8408;ERATE=0.0002;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104473823 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0059;AVGPOST=0.9985;RSQ=0.9021;ERATE=0.0005;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104473979 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6870;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104474009 . C CTT 23 PASS INDEL;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6188;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104474009 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7625;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104474011 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0069;AVGPOST=0.9988;RSQ=0.9340;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104474021 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0025;AVGPOST=0.9967;RSQ=0.4753;ERATE=0.0007;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104474051 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0579;AVGPOST=0.9982;RSQ=0.9884;ERATE=0.0003;THETA=0.0003;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 104474100 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0022;AVGPOST=0.9976;RSQ=0.5900;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104474117 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8497;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104474146 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8663;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104474230 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5634;AVGPOST=0.9930;RSQ=0.9894;ERATE=0.0010;THETA=0.0002;AC=1229;AN=2184 GT:DS:GL:BD 0.56272894 1 1 104474261 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.9777;AVGPOST=0.9957;RSQ=0.9285;ERATE=0.0004;THETA=0.0005;AC=2138;AN=2184 GT:DS:GL:BD 0.97893775 1 1 104474327 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4465;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104474350 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6570;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104474389 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.735;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6351;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104474442 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8964;ERATE=0.0002;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104474596 . GTTATA G 233 PASS INDEL;BAVGPOST=1.000;BRSQ=0.712;LDAF=0.0021;AVGPOST=0.9970;RSQ=0.4520;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104474626 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0168;AVGPOST=0.9991;RSQ=0.9781;ERATE=0.0003;THETA=0.0001;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104474649 MERGED_DEL_2_6575 AGCAAGCCAATATAGATACAAACAACTCTTATCTTATACAAACAAAGTCTAATAATTTAAGCCAGAAAAATAGAGCTTTTTTAAAGATAGCCGCATAAACAGCTCCTGTACAACCTGAGGTGTGGGGAAAGGAGAGAGAGAGAGAGAGAGACAGATCCATCCTTCAGCCTCTATGGAAAGTACTTTGTCA ATGTA . . SV;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0116;AVGPOST=0.9982;RSQ=0.9344;ERATE=0.0004;THETA=0.0004;CIEND=-56;97;CIPOS=-74;83;END=187596895;HOMLEN=0;HOMSEQ;SOURCE=BreakDancer_187593660_187596912;EM GT:DS:GL:BD 0.01098901 0 1 104474764 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5729;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104474815 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8887;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104474850 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.598;LDAF=0.0031;AVGPOST=0.9951;RSQ=0.3704;ERATE=0.0008;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104474856 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5995;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104474918 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4789;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104474958 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0071;AVGPOST=0.9982;RSQ=0.9013;ERATE=0.0004;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104474990 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.867;LDAF=0.0066;AVGPOST=0.9987;RSQ=0.9154;ERATE=0.0004;THETA=0.0011;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104475041 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0050;AVGPOST=0.9991;RSQ=0.9204;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104475046 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5569;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104475068 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1601;AVGPOST=0.9985;RSQ=0.9958;ERATE=0.0003;THETA=0.0014;AC=350;AN=2184 GT:DS:GL:BD 0.16025642 0 1 104475113 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0473;AVGPOST=0.9993;RSQ=0.9937;ERATE=0.0003;THETA=0.0002;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 104475123 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0115;AVGPOST=0.9976;RSQ=0.9158;ERATE=0.0003;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104475194 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0058;AVGPOST=0.9980;RSQ=0.8454;ERATE=0.0004;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104475234 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0239;AVGPOST=0.9985;RSQ=0.9756;ERATE=0.0004;THETA=0.0002;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104475235 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7320;AVGPOST=0.9968;RSQ=0.9949;ERATE=0.0004;THETA=0.0004;AC=1599;AN=2184 GT:DS:GL:BD 0.73214287 1 1 104475373 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0007;AVGPOST=0.9992;RSQ=0.4893;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104475434 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.5656;AVGPOST=0.9980;RSQ=0.9968;ERATE=0.0005;THETA=0.0055;AC=1235;AN=2184 GT:DS:GL:BD 0.56547618 1 1 104475464 . CA C 337 PASS INDEL;BAVGPOST=0.999;BRSQ=0.763;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7347;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104475476 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0024;AVGPOST=0.9987;RSQ=0.7704;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104475530 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6082;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104475549 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0478;AVGPOST=0.9989;RSQ=0.9921;ERATE=0.0003;THETA=0.0002;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 104475661 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7049;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104475669 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.5220;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104475692 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.1266;AVGPOST=0.9977;RSQ=0.9922;ERATE=0.0004;THETA=0.0006;AC=273;AN=2184 GT:DS:GL:BD 0.12500000 0 1 104475722 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.6318;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104475891 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0027;AVGPOST=0.9976;RSQ=0.5931;ERATE=0.0007;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104475961 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0024;AVGPOST=0.9987;RSQ=0.7420;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104475971 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.9151;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104476038 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.2851;AVGPOST=0.9928;RSQ=0.9868;ERATE=0.0003;THETA=0.0010;AC=623;AN=2184 GT:DS:GL:BD 0.28525642 0 1 104476156 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5759;AVGPOST=0.9957;RSQ=0.9938;ERATE=0.0004;THETA=0.0003;AC=1260;AN=2184 GT:DS:GL:BD 0.57692307 1 1 104476179 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9726;ERATE=0.0002;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104476298 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5764;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104476324 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5667;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104476469 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6461;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104476495 . TATG T 1195 PASS INDEL;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0126;AVGPOST=0.9969;RSQ=0.9133;ERATE=0.0005;THETA=0.0001;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104476527 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104476599 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0046;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104476622 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1598;AVGPOST=0.9984;RSQ=0.9954;ERATE=0.0003;THETA=0.0009;AC=350;AN=2184 GT:DS:GL:BD 0.16025642 0 1 104476626 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.967;LDAF=0.5500;AVGPOST=0.9669;RSQ=0.9524;ERATE=0.0141;THETA=0.0004;AC=1208;AN=2184 GT:DS:GL:BD 0.55311358 1 1 104476707 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.730;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5434;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104476735 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0390;AVGPOST=0.9977;RSQ=0.9789;ERATE=0.0003;THETA=0.0002;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 104476788 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6978;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104476821 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8710;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104476899 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.743;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7475;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104476940 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0577;AVGPOST=0.9993;RSQ=0.9953;ERATE=0.0003;THETA=0.0066;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 104477035 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0002;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104477046 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1596;AVGPOST=0.9995;RSQ=0.9986;ERATE=0.0002;THETA=0.0007;AC=349;AN=2184 GT:DS:GL:BD 0.15979853 0 1 104477095 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0418;AVGPOST=0.9989;RSQ=0.9903;ERATE=0.0003;THETA=0.0003;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 104477103 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.822;LDAF=0.0039;AVGPOST=0.9983;RSQ=0.8136;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104477153 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6182;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104477168 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0039;AVGPOST=0.9986;RSQ=0.8512;ERATE=0.0003;THETA=0.0012;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104477174 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.952;LDAF=0.0452;AVGPOST=0.9979;RSQ=0.9814;ERATE=0.0002;THETA=0.0004;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 104477186 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1515;AVGPOST=0.9988;RSQ=0.9963;ERATE=0.0004;THETA=0.0004;AC=331;AN=2184 GT:DS:GL:BD 0.15155677 0 1 104477209 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.613;LDAF=0.0034;AVGPOST=0.9951;RSQ=0.4657;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104477304 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0588;AVGPOST=0.9990;RSQ=0.9936;ERATE=0.0004;THETA=0.0011;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 104477371 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.917;LDAF=0.0051;AVGPOST=0.9986;RSQ=0.8797;ERATE=0.0004;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104477449 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.8093;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104477465 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6043;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104477470 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.984;LDAF=0.1603;AVGPOST=0.9941;RSQ=0.9833;ERATE=0.0010;THETA=0.0004;AC=350;AN=2184 GT:DS:GL:BD 0.16025642 0 1 104477471 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6736;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104477599 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8448;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104477600 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8894;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104477651 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.984;LDAF=0.1273;AVGPOST=0.9962;RSQ=0.9862;ERATE=0.0003;THETA=0.0008;AC=276;AN=2184 GT:DS:GL:BD 0.12637363 0 1 104477680 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5469;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104477682 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0024;AVGPOST=0.9992;RSQ=0.8653;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104477726 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6443;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104477760 . TAAAGAAAA T 1564 PASS INDEL;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0063;AVGPOST=0.9975;RSQ=0.8396;ERATE=0.0009;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104477896 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0028;AVGPOST=0.9978;RSQ=0.6771;ERATE=0.0003;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104477929 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8879;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104477940 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0590;AVGPOST=0.9971;RSQ=0.9814;ERATE=0.0006;THETA=0.0003;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 104477945 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104478156 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0003;AVGPOST=0.9993;RSQ=0.3496;ERATE=0.0003;THETA=0.0017;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104478160 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.943;LDAF=0.0105;AVGPOST=0.9990;RSQ=0.9607;ERATE=0.0004;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104478198 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7691;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104478204 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.908;LDAF=0.0094;AVGPOST=0.9988;RSQ=0.9495;ERATE=0.0003;THETA=0.0018;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104478311 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0047;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104478329 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.9391;AVGPOST=0.9968;RSQ=0.9824;ERATE=0.0003;THETA=0.0056;AC=2051;AN=2184 GT:DS:GL:BD 0.93910259 1 1 104478334 . C CT 48 PASS INDEL;BAVGPOST=0.996;BRSQ=0.596;LDAF=0.0088;AVGPOST=0.9898;RSQ=0.5120;ERATE=0.0018;THETA=0.0040;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104478377 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0014;AVGPOST=0.9979;RSQ=0.3663;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104478506 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1515;AVGPOST=0.9974;RSQ=0.9921;ERATE=0.0004;THETA=0.0006;AC=331;AN=2184 GT:DS:GL:BD 0.15155677 0 1 104478541 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5801;ERATE=0.0002;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104478678 . A AT 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0021;AVGPOST=0.9970;RSQ=0.4357;ERATE=0.0004;THETA=0.0066;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104478746 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.790;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104478751 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.6827;ERATE=0.0005;THETA=0.0030;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104478753 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5533;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104478771 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6336;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104478847 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.668;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.4522;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104478916 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1488;AVGPOST=0.9963;RSQ=0.9887;ERATE=0.0003;THETA=0.0013;AC=327;AN=2184 GT:DS:GL:BD 0.14972527 0 1 104478928 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9668;AVGPOST=0.9993;RSQ=0.9914;ERATE=0.0003;THETA=0.0004;AC=2112;AN=2184 GT:DS:GL:BD 0.96703297 1 1 104478983 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.3539;AVGPOST=0.9973;RSQ=0.9952;ERATE=0.0006;THETA=0.0002;AC=774;AN=2184 GT:DS:GL:BD 0.35439560 0 1 104479061 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.2732;AVGPOST=0.9977;RSQ=0.9955;ERATE=0.0005;THETA=0.0002;AC=598;AN=2184 GT:DS:GL:BD 0.27380952 0 1 104479304 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.987;LDAF=0.3548;AVGPOST=0.9906;RSQ=0.9854;ERATE=0.0013;THETA=0.0005;AC=774;AN=2184 GT:DS:GL:BD 0.35439560 0 1 104479317 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0216;AVGPOST=0.9997;RSQ=0.9938;ERATE=0.0003;THETA=0.0004;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 104479364 . CCTTT C 1342 PASS INDEL;BAVGPOST=0.998;BRSQ=0.831;LDAF=0.0095;AVGPOST=0.9986;RSQ=0.9355;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104479389 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5453;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104479459 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104479476 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0138;AVGPOST=0.9997;RSQ=0.9920;ERATE=0.0003;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104479491 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.767;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5469;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104479529 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=0.9981;RSQ=0.9059;ERATE=0.0004;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104479587 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5706;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104479616 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5125;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104479644 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.3760;AVGPOST=0.9922;RSQ=0.9872;ERATE=0.0008;THETA=0.0002;AC=818;AN=2184 GT:DS:GL:BD 0.37454212 0 1 104479773 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.6569;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104479919 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.745;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5957;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104479951 . TTAGATAG T 1341 PASS INDEL;BAVGPOST=0.998;BRSQ=0.790;LDAF=0.0080;AVGPOST=0.9972;RSQ=0.8659;ERATE=0.0003;THETA=0.0001;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104480024 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3805;AVGPOST=0.9959;RSQ=0.9934;ERATE=0.0004;THETA=0.0002;AC=834;AN=2184 GT:DS:GL:BD 0.38186812 0 1 104480030 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5466;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104480177 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.799;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7335;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104480207 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6602;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104480209 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2733;AVGPOST=0.9991;RSQ=0.9982;ERATE=0.0003;THETA=0.0002;AC=598;AN=2184 GT:DS:GL:BD 0.27380952 0 1 104480320 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9605;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104480332 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2322;AVGPOST=0.9932;RSQ=0.9862;ERATE=0.0012;THETA=0.0010;AC=506;AN=2184 GT:DS:GL:BD 0.23168498 0 1 104480341 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.492;LDAF=0.0011;AVGPOST=0.9982;RSQ=0.3922;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104480413 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0026;AVGPOST=0.9967;RSQ=0.4978;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104480423 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9166;AVGPOST=0.9982;RSQ=0.9917;ERATE=0.0005;THETA=0.0004;AC=2002;AN=2184 GT:DS:GL:BD 0.91666669 1 1 104480518 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.829;LDAF=0.0027;AVGPOST=0.9980;RSQ=0.6933;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104480603 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6553;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104480639 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6344;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104480662 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0018;AVGPOST=0.9987;RSQ=0.6853;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104480695 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0213;AVGPOST=0.9986;RSQ=0.9745;ERATE=0.0005;THETA=0.0002;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 104480730 . A AT 243 PASS INDEL;BAVGPOST=0.996;BRSQ=0.599;LDAF=0.0145;AVGPOST=0.9822;RSQ=0.5638;ERATE=0.0004;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104480745 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5445;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104480759 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0083;AVGPOST=0.9998;RSQ=0.9893;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104480790 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0218;AVGPOST=0.9993;RSQ=0.9870;ERATE=0.0003;THETA=0.0006;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 104480900 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3531;AVGPOST=0.9977;RSQ=0.9957;ERATE=0.0004;THETA=0.0004;AC=771;AN=2184 GT:DS:GL:BD 0.35302198 0 1 104481136 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9389;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104481144 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5763;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104481154 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.817;LDAF=0.0212;AVGPOST=0.9936;RSQ=0.8730;ERATE=0.0007;THETA=0.0003;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 104481232 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0263;AVGPOST=0.9989;RSQ=0.9840;ERATE=0.0003;THETA=0.0002;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 104481385 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0267;AVGPOST=0.9990;RSQ=0.9867;ERATE=0.0003;THETA=0.0004;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 104481390 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.949;LDAF=0.9840;AVGPOST=0.9976;RSQ=0.9490;ERATE=0.0004;THETA=0.0003;AC=2149;AN=2184 GT:DS:GL:BD 0.98397434 1 1 104481423 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6410;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104481665 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104481673 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104481689 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.7008;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104481705 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0034;AVGPOST=0.9981;RSQ=0.7973;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104481780 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5521;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104481842 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.913;LDAF=0.0188;AVGPOST=0.9974;RSQ=0.9448;ERATE=0.0004;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 104481939 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6873;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104481970 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6937;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104482017 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0048;AVGPOST=0.9984;RSQ=0.8951;ERATE=0.0008;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104482040 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5064;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104482075 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8194;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104482099 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9550;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104482115 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104482116 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4502;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104482165 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.912;LDAF=0.0095;AVGPOST=0.9974;RSQ=0.8762;ERATE=0.0005;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104482177 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1913;AVGPOST=0.9987;RSQ=0.9965;ERATE=0.0003;THETA=0.0004;AC=415;AN=2184 GT:DS:GL:BD 0.19001831 0 1 104482274 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0030;AVGPOST=0.9988;RSQ=0.8499;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104482288 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8363;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104482443 . T TC 2621 PASS INDEL;BAVGPOST=0.962;BRSQ=0.705;LDAF=0.0829;AVGPOST=0.9663;RSQ=0.8355;ERATE=0.0043;THETA=0.0004;AC=182;AN=2184 GT:DS:GL:BD 0.08333334 0 1 104482576 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1902;AVGPOST=0.9973;RSQ=0.9934;ERATE=0.0005;THETA=0.0003;AC=412;AN=2184 GT:DS:GL:BD 0.18864469 0 1 104482604 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0127;AVGPOST=0.9994;RSQ=0.9793;ERATE=0.0003;THETA=0.0009;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104482611 . AG A 4706 PASS INDEL;BAVGPOST=0.983;BRSQ=0.770;LDAF=0.0343;AVGPOST=0.9922;RSQ=0.9090;ERATE=0.0009;THETA=0.0010;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 104482645 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.942;LDAF=0.0119;AVGPOST=0.9979;RSQ=0.9385;ERATE=0.0004;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104482659 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5425;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104482698 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5398;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104482752 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9220;ERATE=0.0003;THETA=0.0001;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104482810 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0014;AVGPOST=0.9993;RSQ=0.7928;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104482904 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2732;AVGPOST=0.9985;RSQ=0.9971;ERATE=0.0004;THETA=0.0005;AC=598;AN=2184 GT:DS:GL:BD 0.27380952 0 1 104482952 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104483030 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104483138 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0030;AVGPOST=0.9976;RSQ=0.6863;ERATE=0.0012;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104483287 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6525;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104483555 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0124;AVGPOST=0.9998;RSQ=0.9939;ERATE=0.0003;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104483556 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104483586 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7159;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104483590 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.845;LDAF=0.0063;AVGPOST=0.9984;RSQ=0.8912;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104483698 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0051;AVGPOST=0.9990;RSQ=0.9173;ERATE=0.0005;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104483783 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0224;AVGPOST=0.9997;RSQ=0.9941;ERATE=0.0003;THETA=0.0003;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 104483793 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.773;LDAF=0.0044;AVGPOST=0.9974;RSQ=0.7775;ERATE=0.0005;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104483890 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.871;LDAF=0.0198;AVGPOST=0.9982;RSQ=0.9594;ERATE=0.0004;THETA=0.0006;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 104483973 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104484070 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0051;AVGPOST=0.9988;RSQ=0.9208;ERATE=0.0004;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104484152 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104484335 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.661;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6471;ERATE=0.0003;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104484389 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5321;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104484393 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7764;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104484425 . AT A 791 PASS INDEL;BAVGPOST=0.998;BRSQ=0.864;LDAF=0.0096;AVGPOST=0.9973;RSQ=0.8806;ERATE=0.0006;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104484523 . G GT 267 PASS INDEL;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6050;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104484562 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0033;AVGPOST=0.9988;RSQ=0.8386;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104484695 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0051;AVGPOST=0.9997;RSQ=0.9743;ERATE=0.0002;THETA=0.0026;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104484755 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0110;AVGPOST=0.9998;RSQ=0.9902;ERATE=0.0002;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104484936 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5529;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104484977 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=0.9996;RSQ=0.9699;ERATE=0.0002;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104485029 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8410;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104485047 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7513;ERATE=0.0003;THETA=0.0062;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104485055 . A AC 48 PASS INDEL;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0020;AVGPOST=0.9978;RSQ=0.6046;ERATE=0.0005;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104485172 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5127;AVGPOST=0.9984;RSQ=0.9973;ERATE=0.0004;THETA=0.0006;AC=1118;AN=2184 GT:DS:GL:BD 0.51190478 1 1 104485220 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6802;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104485548 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104485595 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9047;ERATE=0.0002;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104485604 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0117;AVGPOST=0.9994;RSQ=0.9746;ERATE=0.0004;THETA=0.0007;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104485616 . GA G 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0020;AVGPOST=0.9971;RSQ=0.5307;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104485667 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.746;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5112;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104485715 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0266;AVGPOST=0.9987;RSQ=0.9837;ERATE=0.0002;THETA=0.0006;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 104485717 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0112;AVGPOST=0.9993;RSQ=0.9704;ERATE=0.0004;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104485718 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.4354;AVGPOST=0.9977;RSQ=0.9958;ERATE=0.0006;THETA=0.0009;AC=949;AN=2184 GT:DS:GL:BD 0.43452382 0 1 104485736 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0114;AVGPOST=0.9992;RSQ=0.9702;ERATE=0.0004;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104485849 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0074;AVGPOST=0.9996;RSQ=0.9773;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104485902 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0053;AVGPOST=0.9975;RSQ=0.8475;ERATE=0.0002;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104485960 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0111;AVGPOST=0.9998;RSQ=0.9900;ERATE=0.0004;THETA=0.0008;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104486037 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0120;AVGPOST=0.9986;RSQ=0.9569;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104486070 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.988;LDAF=0.3843;AVGPOST=0.9880;RSQ=0.9819;ERATE=0.0005;THETA=0.0005;AC=829;AN=2184 GT:DS:GL:BD 0.37957877 0 1 104486244 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.5628;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104486253 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0113;AVGPOST=0.9994;RSQ=0.9729;ERATE=0.0004;THETA=0.0027;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104486272 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5133;AVGPOST=0.9953;RSQ=0.9923;ERATE=0.0009;THETA=0.0007;AC=1118;AN=2184 GT:DS:GL:BD 0.51190478 1 1 104486332 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.688;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.5654;ERATE=0.0002;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104486399 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.906;LDAF=0.0054;AVGPOST=0.9990;RSQ=0.9121;ERATE=0.0004;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104486413 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0075;AVGPOST=0.9994;RSQ=0.9600;ERATE=0.0004;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104486416 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0076;AVGPOST=0.9992;RSQ=0.9483;ERATE=0.0004;THETA=0.0013;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104486418 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.797;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.7991;ERATE=0.0003;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104486522 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104486631 . TTA T 389 PASS INDEL;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0036;AVGPOST=0.9977;RSQ=0.7412;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104486651 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0181;AVGPOST=0.9979;RSQ=0.9563;ERATE=0.0003;THETA=0.0009;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 104486697 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.5430;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104486712 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104486814 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9594;ERATE=0.0002;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104486831 . T TA 8 PASS INDEL;BAVGPOST=0.999;BRSQ=0.693;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4573;ERATE=0.0007;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104486894 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9895;ERATE=0.0002;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104486915 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4936;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104486972 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0099;AVGPOST=0.9990;RSQ=0.9551;ERATE=0.0004;THETA=0.0009;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104487084 . GAAC G 359 PASS INDEL;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.8768;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104487215 . GA G 1664 PASS INDEL;BAVGPOST=0.998;BRSQ=0.932;LDAF=0.0128;AVGPOST=0.9981;RSQ=0.9341;ERATE=0.0006;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104487231 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.4090;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104487237 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0046;AVGPOST=0.9989;RSQ=0.9237;ERATE=0.0002;THETA=0.0012;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104487268 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4291;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104487273 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.806;LDAF=0.0026;AVGPOST=0.9970;RSQ=0.5737;ERATE=0.0007;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104487276 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.9415;AVGPOST=0.9989;RSQ=0.9913;ERATE=0.0005;THETA=0.0005;AC=2057;AN=2184 GT:DS:GL:BD 0.94184983 1 1 104487450 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0380;AVGPOST=0.9988;RSQ=0.9835;ERATE=0.0004;THETA=0.0009;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 104487479 . AC A 230 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0114;AVGPOST=0.9989;RSQ=0.9577;ERATE=0.0004;THETA=0.0011;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104487481 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0130;AVGPOST=0.9980;RSQ=0.9323;ERATE=0.0004;THETA=0.0006;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104487482 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0110;AVGPOST=0.9997;RSQ=0.9881;ERATE=0.0002;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104487483 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.4729;AVGPOST=0.9886;RSQ=0.9826;ERATE=0.0014;THETA=0.0009;AC=1034;AN=2184 GT:DS:GL:BD 0.47344321 0 1 104487653 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9133;ERATE=0.0002;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104487675 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.4576;AVGPOST=0.9909;RSQ=0.9851;ERATE=0.0010;THETA=0.0006;AC=1000;AN=2184 GT:DS:GL:BD 0.45787546 0 1 104487702 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.733;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7813;ERATE=0.0004;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104487724 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0118;AVGPOST=0.9984;RSQ=0.9393;ERATE=0.0005;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104487836 . CTATT C 188 PASS INDEL;BAVGPOST=0.998;BRSQ=0.564;LDAF=0.0073;AVGPOST=0.9917;RSQ=0.5792;ERATE=0.0008;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104487878 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0080;AVGPOST=0.9979;RSQ=0.8831;ERATE=0.0006;THETA=0.0012;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104488001 . CCT C 36 PASS INDEL;BAVGPOST=0.991;BRSQ=0.470;LDAF=0.0222;AVGPOST=0.9713;RSQ=0.4589;ERATE=0.0052;THETA=0.0008;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104488004 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0077;AVGPOST=0.9992;RSQ=0.9492;ERATE=0.0004;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104488038 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.961;LDAF=0.0103;AVGPOST=0.9942;RSQ=0.7629;ERATE=0.0008;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104488047 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.971;LDAF=0.9768;AVGPOST=0.9958;RSQ=0.9198;ERATE=0.0010;THETA=0.0005;AC=2137;AN=2184 GT:DS:GL:BD 0.97847986 1 1 104488056 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.685;LDAF=0.0062;AVGPOST=0.9944;RSQ=0.6962;ERATE=0.0005;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104488157 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0306;AVGPOST=0.9951;RSQ=0.9429;ERATE=0.0005;THETA=0.0007;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 104488209 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0016;AVGPOST=0.9973;RSQ=0.3722;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104488395 . A AT 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.3751;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104488430 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0112;AVGPOST=0.9995;RSQ=0.9770;ERATE=0.0003;THETA=0.0012;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104488440 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6560;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104488489 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6404;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104488568 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9282;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104488581 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6395;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104488715 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9851;ERATE=0.0002;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104488726 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.463;LDAF=0.0027;AVGPOST=0.9987;RSQ=0.8160;ERATE=0.0003;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104488822 . GATT G 162 PASS INDEL;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0115;AVGPOST=0.9973;RSQ=0.9006;ERATE=0.0004;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104488991 . ATTAT A 1114 PASS INDEL;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0102;AVGPOST=0.9980;RSQ=0.9064;ERATE=0.0006;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104488992 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0107;AVGPOST=0.9963;RSQ=0.8455;ERATE=0.0007;THETA=0.0008;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104489055 rs72063909 G GT 141 PASS INDEL;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0021;AVGPOST=0.9981;RSQ=0.6795;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104489073 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0093;AVGPOST=0.9996;RSQ=0.9827;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104489128 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0348;AVGPOST=0.9998;RSQ=0.9974;ERATE=0.0003;THETA=0.0002;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 104489236 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104489273 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.790;LDAF=0.0061;AVGPOST=0.9952;RSQ=0.7194;ERATE=0.0005;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104489304 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7839;ERATE=0.0005;THETA=0.0001;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104489331 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5479;AVGPOST=0.9939;RSQ=0.9903;ERATE=0.0011;THETA=0.0005;AC=1199;AN=2184 GT:DS:GL:BD 0.54899269 1 1 104489536 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.966;LDAF=0.0347;AVGPOST=0.9998;RSQ=0.9979;ERATE=0.0003;THETA=0.0006;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 104489546 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0102;AVGPOST=0.9992;RSQ=0.9679;ERATE=0.0003;THETA=0.0002;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104489589 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6434;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104489649 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1223;AVGPOST=0.9992;RSQ=0.9969;ERATE=0.0003;THETA=0.0003;AC=267;AN=2184 GT:DS:GL:BD 0.12225275 0 1 104489758 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6368;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104489893 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.4766;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104490113 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9667;ERATE=0.0002;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104490114 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4905;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104490127 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0231;AVGPOST=0.9987;RSQ=0.9831;ERATE=0.0002;THETA=0.0002;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 104490204 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4978;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104490243 . C CA 899 PASS INDEL;BAVGPOST=0.981;BRSQ=0.697;LDAF=0.0474;AVGPOST=0.9525;RSQ=0.6096;ERATE=0.0110;THETA=0.0003;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 104490254 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.5490;AVGPOST=0.9887;RSQ=0.9835;ERATE=0.0017;THETA=0.0028;AC=1199;AN=2184 GT:DS:GL:BD 0.54899269 1 1 104490268 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.774;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7972;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104490319 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6311;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104490353 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0033;AVGPOST=0.9991;RSQ=0.8872;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104490358 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.5068;AVGPOST=0.9967;RSQ=0.9949;ERATE=0.0007;THETA=0.0005;AC=1107;AN=2184 GT:DS:GL:BD 0.50686812 1 1 104490367 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5898;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104490465 . T TA 619 PASS INDEL;BAVGPOST=0.998;BRSQ=0.812;LDAF=0.0071;AVGPOST=0.9961;RSQ=0.7888;ERATE=0.0005;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104490514 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0345;AVGPOST=0.9995;RSQ=0.9940;ERATE=0.0003;THETA=0.0008;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 104490609 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104490776 . T TA 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.6084;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104490860 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0046;AVGPOST=0.9992;RSQ=0.9199;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104490896 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0004;AVGPOST=0.9995;RSQ=0.5372;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104490997 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6786;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104491031 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0108;AVGPOST=0.9979;RSQ=0.9340;ERATE=0.0004;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104491058 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.893;LDAF=0.0045;AVGPOST=0.9983;RSQ=0.8628;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104491065 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7042;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104491174 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0343;AVGPOST=0.9997;RSQ=0.9967;ERATE=0.0003;THETA=0.0003;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 104491175 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0345;AVGPOST=0.9995;RSQ=0.9943;ERATE=0.0003;THETA=0.0004;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 104491361 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.861;LDAF=0.0035;AVGPOST=0.9991;RSQ=0.8918;ERATE=0.0002;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104491554 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8092;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104491610 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0026;AVGPOST=0.9991;RSQ=0.8439;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104491624 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1291;AVGPOST=0.9975;RSQ=0.9918;ERATE=0.0004;THETA=0.0005;AC=280;AN=2184 GT:DS:GL:BD 0.12820514 0 1 104491625 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9473;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104491670 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104491680 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.798;LDAF=0.0044;AVGPOST=0.9970;RSQ=0.7457;ERATE=0.0005;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104491719 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0117;AVGPOST=0.9994;RSQ=0.9772;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104491738 . ATAG A 162 PASS INDEL;BAVGPOST=1.000;BRSQ=0.757;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4363;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104491797 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.721;LDAF=0.0064;AVGPOST=0.9929;RSQ=0.6199;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104491820 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4370;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104491949 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.982;LDAF=0.1846;AVGPOST=0.9896;RSQ=0.9755;ERATE=0.0005;THETA=0.0005;AC=400;AN=2184 GT:DS:GL:BD 0.18315019 0 1 104491954 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0011;AVGPOST=0.9984;RSQ=0.4324;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104492038 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.600;LDAF=0.0022;AVGPOST=0.9966;RSQ=0.4547;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104492053 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0024;AVGPOST=0.9967;RSQ=0.4786;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104492201 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7286;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104492231 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0049;AVGPOST=0.9983;RSQ=0.8490;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104492334 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.750;LDAF=0.0027;AVGPOST=0.9964;RSQ=0.4972;ERATE=0.0007;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104492387 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.684;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4289;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104492554 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0146;AVGPOST=0.9943;RSQ=0.8708;ERATE=0.0004;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104492575 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0052;AVGPOST=0.9995;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104492595 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0133;AVGPOST=0.9988;RSQ=0.9647;ERATE=0.0004;THETA=0.0002;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104492629 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0358;AVGPOST=0.9981;RSQ=0.9798;ERATE=0.0004;THETA=0.0007;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 104492679 . CT C 855 PASS INDEL;BAVGPOST=0.996;BRSQ=0.953;LDAF=0.0386;AVGPOST=0.9912;RSQ=0.9177;ERATE=0.0013;THETA=0.0006;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 104492716 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.873;BRSQ=0.690;LDAF=0.7002;AVGPOST=0.7872;RSQ=0.5905;ERATE=0.0357;THETA=0.0005;AC=1619;AN=2184 GT:DS:GL:BD 0.74130034 1 1 104492737 . ATTT A 503 PASS INDEL;BAVGPOST=0.981;BRSQ=0.595;LDAF=0.0303;AVGPOST=0.9783;RSQ=0.7392;ERATE=0.0014;THETA=0.0004;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 104492738 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0250;AVGPOST=0.9872;RSQ=0.7714;ERATE=0.0012;THETA=0.0006;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 104492753 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.676;LDAF=0.0253;AVGPOST=0.9827;RSQ=0.7378;ERATE=0.0012;THETA=0.0002;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 104492819 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0065;AVGPOST=0.9987;RSQ=0.9131;ERATE=0.0005;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104493130 rs61559313 G GA 12648 PASS INDEL;BAVGPOST=0.905;BRSQ=0.833;LDAF=0.4500;AVGPOST=0.8910;RSQ=0.8430;ERATE=0.0108;THETA=0.0007;AC=1001;AN=2184 GT:DS:GL:BD 0.45833334 0 1 104493164 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.617;LDAF=0.0107;AVGPOST=0.9918;RSQ=0.7443;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104493255 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0101;AVGPOST=0.9982;RSQ=0.9378;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104493309 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0013;AVGPOST=0.9997;RSQ=0.9006;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104493363 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.855;LDAF=0.0034;AVGPOST=0.9979;RSQ=0.7716;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104493395 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.786;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5471;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104493460 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0117;AVGPOST=0.9995;RSQ=0.9827;ERATE=0.0003;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104493486 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0067;AVGPOST=0.9989;RSQ=0.9369;ERATE=0.0003;THETA=0.0046;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104493525 . AG A 43 PASS INDEL;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0017;AVGPOST=0.9978;RSQ=0.4877;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104493581 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0346;AVGPOST=0.9995;RSQ=0.9937;ERATE=0.0003;THETA=0.0006;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 104493593 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.907;LDAF=0.0061;AVGPOST=0.9976;RSQ=0.8640;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104493737 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0031;AVGPOST=0.9992;RSQ=0.8964;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104493743 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1234;AVGPOST=0.9988;RSQ=0.9954;ERATE=0.0003;THETA=0.0004;AC=270;AN=2184 GT:DS:GL:BD 0.12362637 0 1 104493793 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.9122;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104493805 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4939;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104493853 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0351;AVGPOST=0.9984;RSQ=0.9872;ERATE=0.0003;THETA=0.0006;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 104493984 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8467;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104494064 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0006;AVGPOST=0.9990;RSQ=0.3382;ERATE=0.0004;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104494204 . CT C 125 PASS INDEL;BAVGPOST=0.999;BRSQ=0.571;LDAF=0.0026;AVGPOST=0.9980;RSQ=0.6834;ERATE=0.0007;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104494260 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.931;LDAF=0.0144;AVGPOST=0.9981;RSQ=0.9458;ERATE=0.0004;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 104494365 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0025;AVGPOST=0.9976;RSQ=0.6053;ERATE=0.0006;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104494379 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5160;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104494500 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4978;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104494650 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9394;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104494761 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0016;AVGPOST=0.9981;RSQ=0.6082;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104494863 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7194;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104494909 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0080;AVGPOST=0.9995;RSQ=0.9814;ERATE=0.0003;THETA=0.0027;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104494931 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5445;ERATE=0.0004;THETA=0.0049;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104494982 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.985;LDAF=0.0698;AVGPOST=0.9979;RSQ=0.9881;ERATE=0.0004;THETA=0.0002;AC=151;AN=2184 GT:DS:GL:BD 0.06913920 0 1 104495078 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0024;AVGPOST=0.9971;RSQ=0.5693;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104495241 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.7354;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104495253 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.784;LDAF=0.0018;AVGPOST=0.9999;RSQ=0.9762;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104495277 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1814;AVGPOST=0.9995;RSQ=0.9984;ERATE=0.0003;THETA=0.0004;AC=396;AN=2184 GT:DS:GL:BD 0.18131869 0 1 104495292 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6327;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104495379 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0068;AVGPOST=0.9992;RSQ=0.9503;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104495464 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6777;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104495675 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8667;ERATE=0.0004;THETA=0.0033;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104495682 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.691;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4693;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104495690 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7350;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104495728 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.745;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.7857;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104495847 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104495912 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0059;AVGPOST=0.9992;RSQ=0.9522;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104495951 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.982;LDAF=0.0482;AVGPOST=0.9987;RSQ=0.9885;ERATE=0.0003;THETA=0.0002;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 104496079 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7255;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104496111 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0082;AVGPOST=0.9989;RSQ=0.9597;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104496142 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0242;AVGPOST=0.9988;RSQ=0.9820;ERATE=0.0003;THETA=0.0003;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 104496230 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.885;LDAF=0.0214;AVGPOST=0.9962;RSQ=0.9280;ERATE=0.0005;THETA=0.0005;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 104496432 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3211;AVGPOST=0.9979;RSQ=0.9961;ERATE=0.0003;THETA=0.0005;AC=700;AN=2184 GT:DS:GL:BD 0.32051283 0 1 104496461 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6813;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104496562 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0126;AVGPOST=0.9975;RSQ=0.9275;ERATE=0.0003;THETA=0.0007;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104496649 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5029;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104496698 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8037;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104496728 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.649;LDAF=0.0016;AVGPOST=0.9982;RSQ=0.5951;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104496736 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3216;AVGPOST=0.9915;RSQ=0.9852;ERATE=0.0011;THETA=0.0004;AC=702;AN=2184 GT:DS:GL:BD 0.32142857 0 1 104496737 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0810;AVGPOST=0.9982;RSQ=0.9903;ERATE=0.0003;THETA=0.0003;AC=176;AN=2184 GT:DS:GL:BD 0.08058608 0 1 104496770 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6403;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104496812 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2735;AVGPOST=0.9982;RSQ=0.9962;ERATE=0.0004;THETA=0.0003;AC=598;AN=2184 GT:DS:GL:BD 0.27380952 0 1 104496945 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0067;AVGPOST=0.9990;RSQ=0.9353;ERATE=0.0003;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104497007 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.3209;AVGPOST=0.9965;RSQ=0.9936;ERATE=0.0004;THETA=0.0004;AC=700;AN=2184 GT:DS:GL:BD 0.32051283 0 1 104497015 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.6249;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104497052 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6553;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104497236 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104497244 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1815;AVGPOST=0.9989;RSQ=0.9967;ERATE=0.0004;THETA=0.0004;AC=396;AN=2184 GT:DS:GL:BD 0.18131869 0 1 104497251 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.761;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6865;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104497291 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.815;LDAF=0.0032;AVGPOST=0.9979;RSQ=0.7527;ERATE=0.0003;THETA=0.0001;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104497476 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6616;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104497490 . C CT 298 PASS INDEL;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4739;ERATE=0.0005;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104497504 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7102;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104497532 . CA C 50 PASS INDEL;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5841;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104497549 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6108;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104497625 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8086;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104497686 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0018;AVGPOST=0.9987;RSQ=0.6926;ERATE=0.0003;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104497718 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1816;AVGPOST=0.9979;RSQ=0.9945;ERATE=0.0004;THETA=0.0001;AC=396;AN=2184 GT:DS:GL:BD 0.18131869 0 1 104497806 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5407;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104497808 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0759;AVGPOST=0.9996;RSQ=0.9976;ERATE=0.0003;THETA=0.0003;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 104497907 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.969;LDAF=0.0810;AVGPOST=0.9979;RSQ=0.9886;ERATE=0.0006;THETA=0.0003;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 104498007 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.8031;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104498105 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.6964;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104498193 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0087;AVGPOST=0.9989;RSQ=0.9541;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104498297 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0021;AVGPOST=0.9978;RSQ=0.6786;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104498439 . A AG 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4684;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104498503 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0028;AVGPOST=0.9980;RSQ=0.7087;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104498549 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5089;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104498550 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6822;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104498712 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104498811 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0759;AVGPOST=0.9998;RSQ=0.9985;ERATE=0.0003;THETA=0.0002;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 104498844 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.945;LDAF=0.2625;AVGPOST=0.9856;RSQ=0.9750;ERATE=0.0004;THETA=0.0004;AC=579;AN=2184 GT:DS:GL:BD 0.26510990 0 1 104498990 rs78502716 G GTATTACCC 34630 PASS INDEL;BAVGPOST=0.937;BRSQ=0.848;LDAF=0.2426;AVGPOST=0.9585;RSQ=0.9254;ERATE=0.0012;THETA=0.0005;AC=545;AN=2184 GT:DS:GL:BD 0.24954212 0 1 104498994 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5926;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104499113 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0696;AVGPOST=0.9985;RSQ=0.9911;ERATE=0.0004;THETA=0.0002;AC=151;AN=2184 GT:DS:GL:BD 0.06913920 0 1 104499168 . ACACT A 47 PASS INDEL;BAVGPOST=0.999;BRSQ=0.540;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4724;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104499407 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6180;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104499437 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3535;AVGPOST=0.9985;RSQ=0.9971;ERATE=0.0005;THETA=0.0004;AC=770;AN=2184 GT:DS:GL:BD 0.35256410 0 1 104499504 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4389;ERATE=0.0006;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104499523 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104499561 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0017;AVGPOST=0.9973;RSQ=0.4969;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104499803 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0054;AVGPOST=0.9993;RSQ=0.9391;ERATE=0.0003;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104499809 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.3539;AVGPOST=0.9968;RSQ=0.9937;ERATE=0.0010;THETA=0.0012;AC=770;AN=2184 GT:DS:GL:BD 0.35256410 0 1 104499814 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.3586;AVGPOST=0.9984;RSQ=0.9969;ERATE=0.0004;THETA=0.0006;AC=781;AN=2184 GT:DS:GL:BD 0.35760072 0 1 104499965 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.924;LDAF=0.0170;AVGPOST=0.9985;RSQ=0.9613;ERATE=0.0004;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 104499986 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.811;LDAF=0.0027;AVGPOST=0.9988;RSQ=0.8006;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104500011 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.4408;AVGPOST=0.9914;RSQ=0.9873;ERATE=0.0015;THETA=0.0003;AC=963;AN=2184 GT:DS:GL:BD 0.44093406 0 1 104500096 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0023;AVGPOST=0.9983;RSQ=0.6931;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104500151 . A AAT 31 PASS INDEL;BAVGPOST=0.995;BRSQ=0.524;LDAF=0.0164;AVGPOST=0.9770;RSQ=0.4262;ERATE=0.0033;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104500179 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.604;LDAF=0.0023;AVGPOST=0.9985;RSQ=0.7559;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104500197 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104500246 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0098;AVGPOST=0.9993;RSQ=0.9680;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104500375 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0806;AVGPOST=0.9997;RSQ=0.9982;ERATE=0.0003;THETA=0.0004;AC=176;AN=2184 GT:DS:GL:BD 0.08058608 0 1 104500430 . T TC 18 PASS INDEL;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0032;AVGPOST=0.9956;RSQ=0.4387;ERATE=0.0012;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104500566 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104500588 . GGCAGCAGAA G 2455 PASS INDEL;BAVGPOST=0.997;BRSQ=0.844;LDAF=0.0101;AVGPOST=0.9979;RSQ=0.9044;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104500845 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9543;ERATE=0.0004;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104500861 . A ACTCTCT 39838 PASS INDEL;BAVGPOST=0.956;BRSQ=0.918;LDAF=0.4260;AVGPOST=0.9530;RSQ=0.9293;ERATE=0.0084;THETA=0.0004;AC=949;AN=2184 GT:DS:GL:BD 0.43452382 0 1 104500913 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104500993 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.613;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104501172 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104501351 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4386;AVGPOST=0.9973;RSQ=0.9952;ERATE=0.0007;THETA=0.0011;AC=958;AN=2184 GT:DS:GL:BD 0.43864468 0 1 104501405 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0066;AVGPOST=0.9979;RSQ=0.8585;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104501490 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0048;AVGPOST=0.9990;RSQ=0.9138;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104501601 rs34880668 A AC 49465 PASS INDEL;BAVGPOST=0.991;BRSQ=0.985;LDAF=0.5021;AVGPOST=0.9832;RSQ=0.9756;ERATE=0.0066;THETA=0.0003;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 104501670 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4378;AVGPOST=0.9989;RSQ=0.9980;ERATE=0.0004;THETA=0.0003;AC=955;AN=2184 GT:DS:GL:BD 0.43727106 0 1 104501697 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0042;AVGPOST=0.9983;RSQ=0.8394;ERATE=0.0003;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104501738 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0054;AVGPOST=0.9985;RSQ=0.9072;ERATE=0.0004;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104501912 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0021;AVGPOST=0.9978;RSQ=0.6474;ERATE=0.0004;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104501946 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0048;AVGPOST=0.9971;RSQ=0.7457;ERATE=0.0013;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104502053 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4390;AVGPOST=0.9978;RSQ=0.9962;ERATE=0.0006;THETA=0.0005;AC=959;AN=2184 GT:DS:GL:BD 0.43910256 0 1 104502095 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3582;AVGPOST=0.9985;RSQ=0.9972;ERATE=0.0003;THETA=0.0002;AC=781;AN=2184 GT:DS:GL:BD 0.35760072 0 1 104502137 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5024;AVGPOST=0.9986;RSQ=0.9977;ERATE=0.0006;THETA=0.0008;AC=1097;AN=2184 GT:DS:GL:BD 0.50228935 1 1 104502191 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5359;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104502379 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.920;LDAF=0.0287;AVGPOST=0.9957;RSQ=0.9392;ERATE=0.0003;THETA=0.0004;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 104502380 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0810;AVGPOST=0.9987;RSQ=0.9943;ERATE=0.0004;THETA=0.0017;AC=176;AN=2184 GT:DS:GL:BD 0.08058608 0 1 104502457 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5032;AVGPOST=0.9981;RSQ=0.9969;ERATE=0.0006;THETA=0.0043;AC=1098;AN=2184 GT:DS:GL:BD 0.50274724 1 1 104502494 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104502503 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.6312;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104502602 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3575;AVGPOST=0.9964;RSQ=0.9939;ERATE=0.0005;THETA=0.0006;AC=781;AN=2184 GT:DS:GL:BD 0.35760072 0 1 104502659 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7681;ERATE=0.0006;THETA=0.0029;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104502788 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104502821 . GA G 55 PASS INDEL;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5897;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104502821 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.968;LDAF=0.0197;AVGPOST=0.9987;RSQ=0.9726;ERATE=0.0003;THETA=0.0008;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 104502977 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6437;ERATE=0.0003;THETA=0.0066;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104503036 . A AT 1784 PASS INDEL;BAVGPOST=0.784;BRSQ=0.540;LDAF=0.2770;AVGPOST=0.8047;RSQ=0.6468;ERATE=0.0183;THETA=0.0021;AC=575;AN=2184 GT:DS:GL:BD 0.26327839 0 1 104503101 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.910;BRSQ=0.835;LDAF=0.3823;AVGPOST=0.9084;RSQ=0.8540;ERATE=0.0188;THETA=0.0015;AC=850;AN=2184 GT:DS:GL:BD 0.38919413 0 1 104503107 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7898;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104503197 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.782;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8741;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104503211 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0056;AVGPOST=0.9989;RSQ=0.9020;ERATE=0.0006;THETA=0.0028;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104503212 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.979;LDAF=0.3554;AVGPOST=0.9750;RSQ=0.9579;ERATE=0.0021;THETA=0.0054;AC=777;AN=2184 GT:DS:GL:BD 0.35576922 0 1 104503250 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.545;LDAF=0.0066;AVGPOST=0.9962;RSQ=0.7453;ERATE=0.0006;THETA=0.0011;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104503271 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.885;LDAF=0.0107;AVGPOST=0.9971;RSQ=0.8852;ERATE=0.0005;THETA=0.0020;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104503366 . C CA 4272 PASS INDEL;BAVGPOST=0.872;BRSQ=0.749;LDAF=0.2486;AVGPOST=0.8070;RSQ=0.6514;ERATE=0.0314;THETA=0.0090;AC=471;AN=2184 GT:DS:GL:BD 0.21565934 0 1 104503487 . A AT 971 PASS INDEL;BAVGPOST=0.976;BRSQ=0.528;LDAF=0.0240;AVGPOST=0.9906;RSQ=0.8327;ERATE=0.0006;THETA=0.0051;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 104503495 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.909;BRSQ=0.816;LDAF=0.3673;AVGPOST=0.8716;RSQ=0.7712;ERATE=0.0360;THETA=0.0075;AC=766;AN=2184 GT:DS:GL:BD 0.35073259 0 1 104503498 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0026;AVGPOST=0.9957;RSQ=0.4516;ERATE=0.0003;THETA=0.0135;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104503566 . GA G 20 PASS INDEL;BAVGPOST=1.000;BRSQ=0.650;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6107;ERATE=0.0005;THETA=0.0048;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104503597 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.979;LDAF=0.0795;AVGPOST=0.9939;RSQ=0.9747;ERATE=0.0003;THETA=0.0158;AC=174;AN=2184 GT:DS:GL:BD 0.07967033 0 1 104503646 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7184;ERATE=0.0004;THETA=0.0181;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104504007 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.941;LDAF=0.4522;AVGPOST=0.9562;RSQ=0.9372;ERATE=0.0027;THETA=0.0025;AC=983;AN=2184 GT:DS:GL:BD 0.45009157 0 1 104504049 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6021;ERATE=0.0004;THETA=0.0077;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104504188 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.891;LDAF=0.0078;AVGPOST=0.9971;RSQ=0.8645;ERATE=0.0005;THETA=0.0039;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104504221 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.880;LDAF=0.0081;AVGPOST=0.9973;RSQ=0.8683;ERATE=0.0007;THETA=0.0157;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104504253 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.933;BRSQ=0.887;LDAF=0.3788;AVGPOST=0.9260;RSQ=0.8982;ERATE=0.0350;THETA=0.0076;AC=812;AN=2184 GT:DS:GL:BD 0.37179488 0 1 104504263 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.951;LDAF=0.0162;AVGPOST=0.9957;RSQ=0.8917;ERATE=0.0014;THETA=0.0084;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 104504297 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0029;AVGPOST=0.9979;RSQ=0.6726;ERATE=0.0017;THETA=0.0030;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104504368 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.6579;AVGPOST=0.9986;RSQ=0.9975;ERATE=0.0004;THETA=0.0004;AC=1435;AN=2184 GT:DS:GL:BD 0.65705127 1 1 104504622 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8321;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104504703 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0674;AVGPOST=0.9995;RSQ=0.9960;ERATE=0.0003;THETA=0.0004;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 104504752 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0346;AVGPOST=0.9974;RSQ=0.9725;ERATE=0.0003;THETA=0.0005;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 104504831 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0342;AVGPOST=0.9992;RSQ=0.9888;ERATE=0.0003;THETA=0.0006;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 104504911 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0156;AVGPOST=0.9993;RSQ=0.9820;ERATE=0.0003;THETA=0.0006;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 104504918 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8145;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104505002 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0031;AVGPOST=0.9989;RSQ=0.8674;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104505036 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6576;AVGPOST=0.9976;RSQ=0.9956;ERATE=0.0007;THETA=0.0006;AC=1435;AN=2184 GT:DS:GL:BD 0.65705127 1 1 104505045 rs36006370 CA C 4850 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0350;AVGPOST=0.9980;RSQ=0.9736;ERATE=0.0005;THETA=0.0002;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 104505075 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0104;AVGPOST=0.9987;RSQ=0.9588;ERATE=0.0004;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104505085 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.6581;AVGPOST=0.9979;RSQ=0.9961;ERATE=0.0003;THETA=0.0005;AC=1435;AN=2184 GT:DS:GL:BD 0.65705127 1 1 104505093 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8188;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104505104 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.931;LDAF=0.0135;AVGPOST=0.9951;RSQ=0.8648;ERATE=0.0002;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104505166 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0827;AVGPOST=0.9996;RSQ=0.9980;ERATE=0.0003;THETA=0.0005;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 104505176 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0335;AVGPOST=0.9997;RSQ=0.9961;ERATE=0.0003;THETA=0.0005;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 104505188 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1067;AVGPOST=0.9978;RSQ=0.9915;ERATE=0.0005;THETA=0.0005;AC=233;AN=2184 GT:DS:GL:BD 0.10668498 0 1 104505216 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4298;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104505246 . ATTAC A 165 PASS INDEL;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0022;AVGPOST=0.9990;RSQ=0.8317;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104505313 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.588;LDAF=0.0036;AVGPOST=0.9981;RSQ=0.7764;ERATE=0.0005;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104505336 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9655;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104505431 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9789;AVGPOST=0.9995;RSQ=0.9900;ERATE=0.0003;THETA=0.0004;AC=2138;AN=2184 GT:DS:GL:BD 0.97893775 1 1 104505452 . TC T 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4049;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104505507 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0098;AVGPOST=0.9995;RSQ=0.9728;ERATE=0.0004;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104505569 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.736;LDAF=0.0094;AVGPOST=0.9963;RSQ=0.8380;ERATE=0.0004;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104505614 . T TC 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7119;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104505647 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0002;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104505674 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0312;AVGPOST=0.9988;RSQ=0.9832;ERATE=0.0003;THETA=0.0006;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 104505720 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0142;AVGPOST=0.9988;RSQ=0.9615;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104505772 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0666;AVGPOST=0.9988;RSQ=0.9911;ERATE=0.0004;THETA=0.0004;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 104505883 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0156;AVGPOST=0.9994;RSQ=0.9832;ERATE=0.0003;THETA=0.0010;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 104505900 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4829;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104505917 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0022;AVGPOST=0.9975;RSQ=0.5005;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104505977 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0491;AVGPOST=0.9991;RSQ=0.9924;ERATE=0.0002;THETA=0.0005;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 104506096 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0579;AVGPOST=0.9986;RSQ=0.9918;ERATE=0.0004;THETA=0.0006;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 104506105 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0088;AVGPOST=0.9995;RSQ=0.9756;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104506138 . GT G 281 PASS INDEL;BAVGPOST=0.995;BRSQ=0.648;LDAF=0.0088;AVGPOST=0.9894;RSQ=0.5265;ERATE=0.0012;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104506156 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.965;LDAF=0.0479;AVGPOST=0.9969;RSQ=0.9755;ERATE=0.0005;THETA=0.0005;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 104506186 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.5710;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104506238 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8704;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104506335 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.675;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8313;ERATE=0.0002;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104506433 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6162;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104506474 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6317;AVGPOST=0.9962;RSQ=0.9944;ERATE=0.0005;THETA=0.0004;AC=1376;AN=2184 GT:DS:GL:BD 0.63003665 1 1 104506480 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.801;LDAF=0.0043;AVGPOST=0.9970;RSQ=0.7338;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104506490 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0682;AVGPOST=0.9985;RSQ=0.9921;ERATE=0.0003;THETA=0.0006;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 104506514 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9333;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104506516 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7105;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104506525 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5655;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104506604 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7803;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104506791 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8090;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104506900 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0022;AVGPOST=0.9988;RSQ=0.7776;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104506974 . A AT 1701 PASS INDEL;BAVGPOST=0.982;BRSQ=0.750;LDAF=0.0441;AVGPOST=0.9669;RSQ=0.6977;ERATE=0.0052;THETA=0.0005;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 104507025 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6568;AVGPOST=0.9965;RSQ=0.9943;ERATE=0.0007;THETA=0.0005;AC=1434;AN=2184 GT:DS:GL:BD 0.65659338 1 1 104507029 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7602;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104507063 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0065;AVGPOST=0.9996;RSQ=0.9731;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104507080 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0048;AVGPOST=0.9996;RSQ=0.9631;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104507087 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0098;AVGPOST=0.9990;RSQ=0.9542;ERATE=0.0005;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104507114 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1041;AVGPOST=0.9973;RSQ=0.9906;ERATE=0.0003;THETA=0.0039;AC=225;AN=2184 GT:DS:GL:BD 0.10302198 0 1 104507149 . CATATT C 120 PASS INDEL;BAVGPOST=1.000;BRSQ=0.736;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4038;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104507181 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.834;LDAF=0.0051;AVGPOST=0.9979;RSQ=0.8575;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104507219 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0069;AVGPOST=0.9984;RSQ=0.9023;ERATE=0.0004;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104507245 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4508;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104507251 . GA G 367 PASS INDEL;BAVGPOST=0.987;BRSQ=0.789;LDAF=0.0382;AVGPOST=0.9917;RSQ=0.9062;ERATE=0.0010;THETA=0.0008;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 104507379 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.762;LDAF=0.0368;AVGPOST=0.9791;RSQ=0.7954;ERATE=0.0013;THETA=0.0010;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 104507403 . A ATC 1219 PASS INDEL;BAVGPOST=0.972;BRSQ=0.675;LDAF=0.0407;AVGPOST=0.9803;RSQ=0.8089;ERATE=0.0012;THETA=0.0005;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 104507403 . ATATATC A 1091 PASS INDEL;BAVGPOST=0.917;BRSQ=0.478;LDAF=0.1373;AVGPOST=0.8427;RSQ=0.4627;ERATE=0.0194;THETA=0.0004;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 104507405 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.778;LDAF=0.0707;AVGPOST=0.9513;RSQ=0.7324;ERATE=0.0042;THETA=0.0014;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 104507407 . A ATC 2285 PASS INDEL;BAVGPOST=0.967;BRSQ=0.744;LDAF=0.0826;AVGPOST=0.9363;RSQ=0.6934;ERATE=0.0045;THETA=0.0005;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 104507407 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0340;AVGPOST=0.9973;RSQ=0.9727;ERATE=0.0004;THETA=0.0033;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 104507481 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0152;AVGPOST=0.9989;RSQ=0.9717;ERATE=0.0004;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104507604 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.912;LDAF=0.0189;AVGPOST=0.9970;RSQ=0.9341;ERATE=0.0005;THETA=0.0005;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 104507612 . TTA T 50 PASS INDEL;BAVGPOST=0.984;BRSQ=0.536;LDAF=0.0250;AVGPOST=0.9750;RSQ=0.6122;ERATE=0.0028;THETA=0.0005;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 104507729 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5016;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104507851 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0158;AVGPOST=0.9982;RSQ=0.9609;ERATE=0.0002;THETA=0.0005;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 104507858 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0024;AVGPOST=0.9981;RSQ=0.6932;ERATE=0.0003;THETA=0.0019;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104507961 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.714;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104507963 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1075;AVGPOST=0.9973;RSQ=0.9880;ERATE=0.0003;THETA=0.0006;AC=234;AN=2184 GT:DS:GL:BD 0.10714286 0 1 104508043 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.8404;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104508046 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104508050 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0066;AVGPOST=0.9997;RSQ=0.9765;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104508103 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0176;AVGPOST=0.9992;RSQ=0.9798;ERATE=0.0004;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 104508135 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6010;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104508151 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0502;AVGPOST=0.9964;RSQ=0.9710;ERATE=0.0003;THETA=0.0009;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 104508184 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=0.9996;RSQ=0.9818;ERATE=0.0003;THETA=0.0011;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104508197 . CA C 76 PASS INDEL;BAVGPOST=1.000;BRSQ=0.679;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.5046;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104508339 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7899;ERATE=0.0002;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104508344 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6490;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104508358 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9778;AVGPOST=0.9977;RSQ=0.9627;ERATE=0.0003;THETA=0.0006;AC=2138;AN=2184 GT:DS:GL:BD 0.97893775 1 1 104508391 . G GC 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8247;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104508524 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6798;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104508535 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0023;AVGPOST=0.9986;RSQ=0.7636;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104508559 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=0.9997;RSQ=0.9862;ERATE=0.0003;THETA=0.0033;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104508573 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7830;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104508643 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6180;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104508653 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.887;LDAF=0.0056;AVGPOST=0.9987;RSQ=0.9024;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104508656 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.7246;ERATE=0.0002;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104508660 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7467;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104508667 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0020;AVGPOST=0.9992;RSQ=0.8516;ERATE=0.0003;THETA=0.0017;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104508679 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.5806;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104508689 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.5771;ERATE=0.0002;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104508824 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0069;AVGPOST=0.9982;RSQ=0.8976;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104508841 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6931;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104508941 . T TC 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5200;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104508980 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0182;AVGPOST=0.9982;RSQ=0.9559;ERATE=0.0005;THETA=0.0008;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 104509296 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0310;AVGPOST=0.9993;RSQ=0.9920;ERATE=0.0003;THETA=0.0005;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 104509311 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9797;AVGPOST=0.9993;RSQ=0.9846;ERATE=0.0004;THETA=0.0043;AC=2140;AN=2184 GT:DS:GL:BD 0.97985345 1 1 104509504 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0338;AVGPOST=0.9972;RSQ=0.9661;ERATE=0.0006;THETA=0.0006;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 104509513 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0154;AVGPOST=0.9983;RSQ=0.9625;ERATE=0.0003;THETA=0.0009;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104509564 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.7254;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104509605 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104509626 . T TG 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0023;AVGPOST=0.9986;RSQ=0.7418;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104509653 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104509674 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.865;LDAF=0.0059;AVGPOST=0.9984;RSQ=0.9053;ERATE=0.0002;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104509706 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6237;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104509943 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5513;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104510016 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0113;AVGPOST=0.9993;RSQ=0.9705;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104510039 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1321;AVGPOST=0.9979;RSQ=0.9929;ERATE=0.0003;THETA=0.0005;AC=289;AN=2184 GT:DS:GL:BD 0.13232601 0 1 104510060 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4557;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104510227 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6351;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104510257 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.695;LDAF=0.0028;AVGPOST=0.9987;RSQ=0.8143;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104510275 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9087;ERATE=0.0004;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104510513 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104510751 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6264;AVGPOST=0.9988;RSQ=0.9977;ERATE=0.0003;THETA=0.0009;AC=1367;AN=2184 GT:DS:GL:BD 0.62591577 1 1 104510850 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8526;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104510925 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6365;AVGPOST=0.9991;RSQ=0.9984;ERATE=0.0002;THETA=0.0005;AC=1389;AN=2184 GT:DS:GL:BD 0.63598901 1 1 104510971 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0002;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104510994 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0035;AVGPOST=0.9993;RSQ=0.9139;ERATE=0.0002;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104511026 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.933;BRSQ=0.852;LDAF=0.3141;AVGPOST=0.9186;RSQ=0.8598;ERATE=0.0048;THETA=0.0006;AC=677;AN=2184 GT:DS:GL:BD 0.30998167 0 1 104511584 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.912;BRSQ=0.105;LDAF=0.8769;AVGPOST=0.8328;RSQ=0.3782;ERATE=0.0127;THETA=0.0007;AC=2031;AN=2184 GT:DS:GL:BD 0.92994505 1 1 104511592 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.965;LDAF=0.1761;AVGPOST=0.9873;RSQ=0.9638;ERATE=0.0011;THETA=0.0002;AC=380;AN=2184 GT:DS:GL:BD 0.17399268 0 1 104511627 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0074;AVGPOST=0.9984;RSQ=0.8969;ERATE=0.0005;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104511667 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.910;LDAF=0.0495;AVGPOST=0.9920;RSQ=0.9309;ERATE=0.0004;THETA=0.0003;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 104511693 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8974;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104511787 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104511828 . CT C 36 PASS INDEL;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4419;ERATE=0.0009;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104511836 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0029;AVGPOST=0.9972;RSQ=0.6633;ERATE=0.0002;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104511935 . TG T 312 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9200;ERATE=0.0004;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104511970 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104511973 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104511976 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.892;LDAF=0.0134;AVGPOST=0.9967;RSQ=0.9084;ERATE=0.0002;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104511997 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0128;AVGPOST=0.9982;RSQ=0.9481;ERATE=0.0003;THETA=0.0002;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104512015 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1738;AVGPOST=0.9994;RSQ=0.9979;ERATE=0.0003;THETA=0.0004;AC=379;AN=2184 GT:DS:GL:BD 0.17353480 0 1 104512085 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0091;AVGPOST=0.9989;RSQ=0.9493;ERATE=0.0004;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104512110 . AG A 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0066;AVGPOST=0.9904;RSQ=0.4804;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104512153 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.688;LDAF=0.0026;AVGPOST=0.9988;RSQ=0.8003;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104512155 . A AT 46 PASS INDEL;BAVGPOST=0.997;BRSQ=0.520;LDAF=0.0047;AVGPOST=0.9945;RSQ=0.5608;ERATE=0.0005;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104512207 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.971;LDAF=0.0359;AVGPOST=0.9950;RSQ=0.9463;ERATE=0.0004;THETA=0.0003;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 104512215 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0077;AVGPOST=0.9954;RSQ=0.7581;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104512216 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.987;LDAF=0.1308;AVGPOST=0.9954;RSQ=0.9845;ERATE=0.0005;THETA=0.0004;AC=288;AN=2184 GT:DS:GL:BD 0.13186814 0 1 104512312 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8638;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104512358 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104512456 . C CA 125 PASS INDEL;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0021;AVGPOST=0.9981;RSQ=0.6210;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104512587 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.8964;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104512683 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0123;AVGPOST=0.9985;RSQ=0.9522;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104512689 . ACT A 59 PASS INDEL;BAVGPOST=0.999;BRSQ=0.641;LDAF=0.0028;AVGPOST=0.9983;RSQ=0.7575;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104512894 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.986;LDAF=0.4486;AVGPOST=0.9878;RSQ=0.9818;ERATE=0.0018;THETA=0.0005;AC=982;AN=2184 GT:DS:GL:BD 0.44963369 0 1 104512920 . T TA 127 PASS INDEL;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0093;AVGPOST=0.9947;RSQ=0.7782;ERATE=0.0005;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104513001 MERGED_DEL_2_6703 CTTATATATATATAATATATATAGTATATATACTATATATATTATATATATACTATATATATTATATATAGTGTGTATACTATATATATTATATATAGTGTGTATATATATATACACACACACACAAAGAGAGACTCTGACTGTGGCCACATATCCTAGTGAATTTCAGTACTATACATTTCAAGTTCCC C . . SV;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0072;AVGPOST=0.9984;RSQ=0.9166;ERATE=0.0003;THETA=0.0002;CIEND=-44;109;CIPOS=-91;66;END=195019758;HOMLEN=3;HOMSEQ=TTA;SOURCE=BreakDancer_195013811_1950197 GT:DS:GL:BD 0.00641026 0 1 104513014 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0068;AVGPOST=0.9927;RSQ=0.5516;ERATE=0.0009;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104513015 . TTA T 9197 PASS INDEL;BAVGPOST=0.999;BRSQ=0;LDAF=0.9828;AVGPOST=0.9810;RSQ=0.5624;ERATE=0.0018;THETA=0.0006;AC=2153;AN=2184 GT:DS:GL:BD 0.98580587 1 1 104513015 rs35749467 AT A 7734 PASS INDEL;BAVGPOST=0.972;BRSQ=0.923;LDAF=0.2092;AVGPOST=0.9620;RSQ=0.9186;ERATE=0.0025;THETA=0.0003;AC=449;AN=2184 GT:DS:GL:BD 0.20558608 0 1 104513034 . AG A 42 PASS INDEL;BAVGPOST=0.995;BRSQ=0.349;LDAF=0.0365;AVGPOST=0.9472;RSQ=0.4286;ERATE=0.0039;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 104513036 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.571;LDAF=0.0212;AVGPOST=0.9875;RSQ=0.7533;ERATE=0.0016;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 104513038 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.330;LDAF=0.0022;AVGPOST=0.9968;RSQ=0.3525;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104513044 . T TTA 127 PASS INDEL;BAVGPOST=0.990;BRSQ=0.277;LDAF=0.0366;AVGPOST=0.9610;RSQ=0.5748;ERATE=0.0020;THETA=0.0003;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 104513055 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.483;LDAF=0.0071;AVGPOST=0.9904;RSQ=0.4695;ERATE=0.0010;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104513075 . C CTA 186 PASS INDEL;BAVGPOST=0.997;BRSQ=0.403;LDAF=0.0115;AVGPOST=0.9874;RSQ=0.5558;ERATE=0.0009;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104513093 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.985;LDAF=0.3154;AVGPOST=0.9840;RSQ=0.9728;ERATE=0.0008;THETA=0.0002;AC=687;AN=2184 GT:DS:GL:BD 0.31456044 0 1 104513126 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.753;LDAF=0.0030;AVGPOST=0.9973;RSQ=0.6017;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104513146 . ACT A 183 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0059;AVGPOST=0.9963;RSQ=0.7167;ERATE=0.0008;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104513147 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0962;AVGPOST=0.9979;RSQ=0.9893;ERATE=0.0004;THETA=0.0005;AC=209;AN=2184 GT:DS:GL:BD 0.09569597 0 1 104513180 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.941;LDAF=0.0205;AVGPOST=0.9946;RSQ=0.8936;ERATE=0.0006;THETA=0.0007;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 104513357 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.727;LDAF=0.0050;AVGPOST=0.9959;RSQ=0.6622;ERATE=0.0007;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104513433 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2002;AVGPOST=0.9950;RSQ=0.9890;ERATE=0.0004;THETA=0.0003;AC=435;AN=2184 GT:DS:GL:BD 0.19917582 0 1 104513529 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.906;LDAF=0.0174;AVGPOST=0.9988;RSQ=0.9682;ERATE=0.0003;THETA=0.0005;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 104513536 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4535;AVGPOST=0.9973;RSQ=0.9958;ERATE=0.0004;THETA=0.0004;AC=990;AN=2184 GT:DS:GL:BD 0.45329669 0 1 104513555 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0212;AVGPOST=0.9965;RSQ=0.9322;ERATE=0.0004;THETA=0.0003;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 104513593 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.847;LDAF=0.0030;AVGPOST=0.9976;RSQ=0.6849;ERATE=0.0012;THETA=0.0001;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104513607 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.796;LDAF=0.0055;AVGPOST=0.9983;RSQ=0.8640;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104513619 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0072;AVGPOST=0.9991;RSQ=0.9574;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104513788 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.983;LDAF=0.1337;AVGPOST=0.9983;RSQ=0.9936;ERATE=0.0004;THETA=0.0003;AC=291;AN=2184 GT:DS:GL:BD 0.13324176 0 1 104513793 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6021;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104514049 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.969;LDAF=0.6121;AVGPOST=0.9677;RSQ=0.9505;ERATE=0.0053;THETA=0.0007;AC=1352;AN=2184 GT:DS:GL:BD 0.61904764 1 1 104514229 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.592;LDAF=0.0038;AVGPOST=0.9959;RSQ=0.5777;ERATE=0.0006;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104514239 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.801;LDAF=0.0056;AVGPOST=0.9945;RSQ=0.6485;ERATE=0.0012;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104514472 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6740;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104514495 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0125;AVGPOST=0.9987;RSQ=0.9569;ERATE=0.0003;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104514563 . GTA G 28 PASS INDEL;BAVGPOST=0.998;BRSQ=0.667;LDAF=0.0096;AVGPOST=0.9912;RSQ=0.6342;ERATE=0.0016;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104514563 . CAA C 121 PASS INDEL;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6901;ERATE=0.0007;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104514657 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0041;AVGPOST=0.9998;RSQ=0.9735;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104514699 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6167;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0004;THETA=0.0003;AC=1350;AN=2184 GT:DS:GL:BD 0.61813188 1 1 104514714 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.690;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.5618;ERATE=0.0009;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104514783 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6315;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104514834 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.9026;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104514882 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0019;AVGPOST=0.9974;RSQ=0.4261;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104514930 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.806;LDAF=0.0031;AVGPOST=0.9973;RSQ=0.6676;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104514982 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6175;AVGPOST=0.9936;RSQ=0.9901;ERATE=0.0009;THETA=0.0008;AC=1352;AN=2184 GT:DS:GL:BD 0.61904764 1 1 104515024 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104515036 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6029;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104515108 . TC T 21776 PASS INDEL;BAVGPOST=0.976;BRSQ=0.959;LDAF=0.5471;AVGPOST=0.9450;RSQ=0.9237;ERATE=0.0096;THETA=0.0002;AC=1217;AN=2184 GT:DS:GL:BD 0.55723441 1 1 104515109 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.959;LDAF=0.5678;AVGPOST=0.9750;RSQ=0.9641;ERATE=0.0004;THETA=0.0002;AC=1245;AN=2184 GT:DS:GL:BD 0.57005495 1 1 104515110 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.958;LDAF=0.5671;AVGPOST=0.9747;RSQ=0.9637;ERATE=0.0004;THETA=0.0005;AC=1245;AN=2184 GT:DS:GL:BD 0.57005495 1 1 104515111 . T TTA 33978 PASS INDEL;BAVGPOST=0.976;BRSQ=0.959;LDAF=0.5630;AVGPOST=0.9658;RSQ=0.9511;ERATE=0.0062;THETA=0.0002;AC=1243;AN=2184 GT:DS:GL:BD 0.56913918 1 1 104515111 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8630;AVGPOST=0.9979;RSQ=0.9927;ERATE=0.0006;THETA=0.0011;AC=1888;AN=2184 GT:DS:GL:BD 0.86446887 1 1 104515201 . T TC 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5209;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104515233 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5332;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104515335 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8241;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104515336 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8710;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104515385 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.658;LDAF=0.0024;AVGPOST=0.9970;RSQ=0.4805;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104515405 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0017;AVGPOST=0.9978;RSQ=0.4739;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104515442 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8857;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104515456 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.867;LDAF=0.0090;AVGPOST=0.9964;RSQ=0.8411;ERATE=0.0008;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104515529 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7494;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104515566 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2124;AVGPOST=0.9986;RSQ=0.9968;ERATE=0.0004;THETA=0.0002;AC=463;AN=2184 GT:DS:GL:BD 0.21199633 0 1 104515620 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1714;AVGPOST=0.9981;RSQ=0.9952;ERATE=0.0004;THETA=0.0002;AC=373;AN=2184 GT:DS:GL:BD 0.17078754 0 1 104515640 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0324;AVGPOST=0.9992;RSQ=0.9898;ERATE=0.0003;THETA=0.0012;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 104515688 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104515695 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0399;AVGPOST=0.9993;RSQ=0.9921;ERATE=0.0004;THETA=0.0003;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 104515775 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0063;AVGPOST=0.9995;RSQ=0.9638;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104515776 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104515802 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.691;LDAF=0.0043;AVGPOST=0.9974;RSQ=0.7727;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104515832 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4910;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104515839 . T TA 87 PASS INDEL;BAVGPOST=0.998;BRSQ=0.671;LDAF=0.0032;AVGPOST=0.9981;RSQ=0.7779;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104515900 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1142;AVGPOST=0.9978;RSQ=0.9916;ERATE=0.0004;THETA=0.0007;AC=250;AN=2184 GT:DS:GL:BD 0.11446887 0 1 104516037 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.670;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7139;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104516062 . GA G 1559 PASS INDEL;BAVGPOST=0.887;BRSQ=0.529;LDAF=0.1884;AVGPOST=0.8129;RSQ=0.4819;ERATE=0.0551;THETA=0.0003;AC=276;AN=2184 GT:DS:GL:BD 0.12637363 0 1 104516076 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.891;BRSQ=0.724;LDAF=0.6469;AVGPOST=0.8433;RSQ=0.6678;ERATE=0.0865;THETA=0.0003;AC=1467;AN=2184 GT:DS:GL:BD 0.67170328 1 1 104516079 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.989;LDAF=0.2619;AVGPOST=0.9925;RSQ=0.9862;ERATE=0.0008;THETA=0.0004;AC=570;AN=2184 GT:DS:GL:BD 0.26098901 0 1 104516263 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0399;AVGPOST=0.9996;RSQ=0.9952;ERATE=0.0003;THETA=0.0003;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 104516272 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0250;AVGPOST=0.9994;RSQ=0.9883;ERATE=0.0003;THETA=0.0006;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 104516285 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6709;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104516301 . TA T 40 PASS INDEL;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104516493 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.685;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6524;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104516510 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7817;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104516649 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104516733 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104516814 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.6765;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104516955 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8061;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104516963 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6944;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104517025 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104517225 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104517244 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0335;AVGPOST=0.9995;RSQ=0.9944;ERATE=0.0003;THETA=0.0003;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 104517280 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0020;AVGPOST=0.9973;RSQ=0.4747;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104517364 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1077;AVGPOST=0.9979;RSQ=0.9914;ERATE=0.0004;THETA=0.0005;AC=233;AN=2184 GT:DS:GL:BD 0.10668498 0 1 104517365 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0023;AVGPOST=0.9986;RSQ=0.7874;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104517427 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.984;LDAF=0.1344;AVGPOST=0.9938;RSQ=0.9806;ERATE=0.0005;THETA=0.0004;AC=294;AN=2184 GT:DS:GL:BD 0.13461539 0 1 104517600 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4770;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104517610 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5114;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104517650 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.813;LDAF=0.0133;AVGPOST=0.9957;RSQ=0.8757;ERATE=0.0004;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104517775 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6141;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104517779 . AT A 3923 PASS INDEL;BAVGPOST=0.994;BRSQ=0.918;LDAF=0.0335;AVGPOST=0.9979;RSQ=0.9725;ERATE=0.0004;THETA=0.0011;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 104517869 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104517894 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0061;AVGPOST=0.9989;RSQ=0.9097;ERATE=0.0006;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104517958 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4187;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104518043 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5149;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104518075 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.9733;AVGPOST=0.9962;RSQ=0.9499;ERATE=0.0004;THETA=0.0002;AC=2128;AN=2184 GT:DS:GL:BD 0.97435898 1 1 104518083 . GT G 2754 PASS INDEL;BAVGPOST=0.998;BRSQ=0.977;LDAF=0.0421;AVGPOST=0.9952;RSQ=0.9569;ERATE=0.0008;THETA=0.0006;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 104518181 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6752;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104518203 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6265;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104518286 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104518445 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0074;AVGPOST=0.9986;RSQ=0.9160;ERATE=0.0004;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104518474 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0056;AVGPOST=0.9995;RSQ=0.9626;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104518611 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.854;LDAF=0.0055;AVGPOST=0.9981;RSQ=0.8636;ERATE=0.0005;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104518749 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1728;AVGPOST=0.9988;RSQ=0.9969;ERATE=0.0004;THETA=0.0003;AC=376;AN=2184 GT:DS:GL:BD 0.17216118 0 1 104518758 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104518784 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104518800 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0025;AVGPOST=0.9969;RSQ=0.5007;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104518828 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.620;LDAF=0.0020;AVGPOST=0.9969;RSQ=0.3880;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104518997 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.647;LDAF=0.0035;AVGPOST=0.9965;RSQ=0.6839;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104519048 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7478;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104519067 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.785;LDAF=0.0064;AVGPOST=0.9973;RSQ=0.8207;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104519077 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0129;AVGPOST=0.9995;RSQ=0.9846;ERATE=0.0003;THETA=0.0001;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104519140 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.3593;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104519148 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0074;AVGPOST=0.9985;RSQ=0.9175;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104519151 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104519160 . CA C 83 PASS INDEL;BAVGPOST=0.999;BRSQ=0.754;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4315;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104519166 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1658;AVGPOST=0.9971;RSQ=0.9931;ERATE=0.0004;THETA=0.0004;AC=360;AN=2184 GT:DS:GL:BD 0.16483517 0 1 104519194 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3534;AVGPOST=0.9968;RSQ=0.9943;ERATE=0.0006;THETA=0.0003;AC=770;AN=2184 GT:DS:GL:BD 0.35256410 0 1 104519244 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.566;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5567;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104519309 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.585;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.6887;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104519363 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.6910;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104519395 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1731;AVGPOST=0.9978;RSQ=0.9945;ERATE=0.0005;THETA=0.0003;AC=378;AN=2184 GT:DS:GL:BD 0.17307693 0 1 104519533 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7772;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104519563 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104519801 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0078;AVGPOST=0.9990;RSQ=0.9522;ERATE=0.0003;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104519831 . C CAT 1289 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0132;AVGPOST=0.9950;RSQ=0.8516;ERATE=0.0005;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104519851 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.745;LDAF=0.0218;AVGPOST=0.9876;RSQ=0.7985;ERATE=0.0008;THETA=0.0005;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 104519905 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.492;LDAF=0.0032;AVGPOST=0.9961;RSQ=0.5265;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104520024 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0087;AVGPOST=0.9954;RSQ=0.8092;ERATE=0.0005;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104520056 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.497;LDAF=0.0105;AVGPOST=0.9910;RSQ=0.6947;ERATE=0.0008;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104520112 rs71851833 AATATATTAT A 6563 PASS INDEL;BAVGPOST=0.830;BRSQ=0.458;LDAF=0.1879;AVGPOST=0.8587;RSQ=0.6422;ERATE=0.0082;THETA=0.0006;AC=381;AN=2184 GT:DS:GL:BD 0.17445055 0 1 104520132 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.932;BRSQ=0.301;LDAF=0.0817;AVGPOST=0.9063;RSQ=0.5104;ERATE=0.0035;THETA=0.0004;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 104520147 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.681;BRSQ=0.361;LDAF=0.3183;AVGPOST=0.7222;RSQ=0.4565;ERATE=0.0215;THETA=0.0024;AC=590;AN=2184 GT:DS:GL:BD 0.27014652 0 1 104520160 . TTA T 923 PASS INDEL;BAVGPOST=0.838;BRSQ=0.147;LDAF=0.1406;AVGPOST=0.8489;RSQ=0.5172;ERATE=0.0072;THETA=0.0006;AC=241;AN=2184 GT:DS:GL:BD 0.11034799 0 1 104520172 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.554;BRSQ=0.281;LDAF=0.4955;AVGPOST=0.6364;RSQ=0.3629;ERATE=0.0471;THETA=0.0005;AC=1038;AN=2184 GT:DS:GL:BD 0.47527471 0 1 104520194 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.869;BRSQ=0.114;LDAF=0.1629;AVGPOST=0.7774;RSQ=0.3346;ERATE=0.0116;THETA=0.0006;AC=169;AN=2184 GT:DS:GL:BD 0.07738096 0 1 104520219 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.560;BRSQ=0.233;LDAF=0.6414;AVGPOST=0.6804;RSQ=0.4461;ERATE=0.0301;THETA=0.0019;AC=1503;AN=2184 GT:DS:GL:BD 0.68818682 1 1 104520223 . TTA T 157 PASS INDEL;BAVGPOST=0.929;BRSQ=0.091;LDAF=0.1277;AVGPOST=0.8164;RSQ=0.3478;ERATE=0.0134;THETA=0.0005;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 104520231 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.536;BRSQ=0.092;LDAF=0.3703;AVGPOST=0.6600;RSQ=0.3349;ERATE=0.0295;THETA=0.0008;AC=651;AN=2184 GT:DS:GL:BD 0.29807693 0 1 104520253 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.503;BRSQ=0.119;LDAF=0.3527;AVGPOST=0.6866;RSQ=0.3836;ERATE=0.0246;THETA=0.0009;AC=640;AN=2184 GT:DS:GL:BD 0.29304031 0 1 104520287 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.127;LDAF=0.0642;AVGPOST=0.9090;RSQ=0.4045;ERATE=0.0044;THETA=0.0006;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 104520311 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.701;BRSQ=0.123;LDAF=0.2824;AVGPOST=0.6773;RSQ=0.3043;ERATE=0.0298;THETA=0.0004;AC=386;AN=2184 GT:DS:GL:BD 0.17673993 0 1 104520321 rs67464127 ATATAT A 121 PASS INDEL;BAVGPOST=0.844;BRSQ=0.007;LDAF=0.0986;AVGPOST=0.8494;RSQ=0.3281;ERATE=0.0079;THETA=0.0003;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 104520328 rs67464127 AATATATTAT A 1258 PASS INDEL;BAVGPOST=0.861;BRSQ=0.112;LDAF=0.2023;AVGPOST=0.7282;RSQ=0.3250;ERATE=0.0171;THETA=0.0008;AC=247;AN=2184 GT:DS:GL:BD 0.11309524 0 1 104520352 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.239;LDAF=0.0231;AVGPOST=0.9770;RSQ=0.6075;ERATE=0.0013;THETA=0.0018;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 104520391 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.901;BRSQ=0.772;LDAF=0.2935;AVGPOST=0.7965;RSQ=0.6035;ERATE=0.0193;THETA=0.0012;AC=540;AN=2184 GT:DS:GL:BD 0.24725275 0 1 104520404 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.701;LDAF=0.0044;AVGPOST=0.9941;RSQ=0.4862;ERATE=0.0008;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104520474 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.829;LDAF=0.0035;AVGPOST=0.9970;RSQ=0.6842;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104520672 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0050;AVGPOST=0.9995;RSQ=0.9569;ERATE=0.0003;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104520748 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.655;LDAF=0.0207;AVGPOST=0.9855;RSQ=0.7234;ERATE=0.0011;THETA=0.0008;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 104520863 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.791;LDAF=0.0099;AVGPOST=0.9960;RSQ=0.8446;ERATE=0.0004;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104520897 . TGGCGTCAACCCG T 1422 PASS INDEL;BAVGPOST=0.997;BRSQ=0.808;LDAF=0.0077;AVGPOST=0.9961;RSQ=0.7734;ERATE=0.0006;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104520949 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.986;LDAF=0.2459;AVGPOST=0.9906;RSQ=0.9817;ERATE=0.0009;THETA=0.0009;AC=536;AN=2184 GT:DS:GL:BD 0.24542125 0 1 104520953 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.792;LDAF=0.0129;AVGPOST=0.9954;RSQ=0.8601;ERATE=0.0005;THETA=0.0006;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104520956 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0108;AVGPOST=0.9994;RSQ=0.9730;ERATE=0.0003;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104520990 . C CA 200 PASS INDEL;BAVGPOST=0.974;BRSQ=0.508;LDAF=0.0507;AVGPOST=0.9354;RSQ=0.4644;ERATE=0.0115;THETA=0.0003;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 104521035 . AAAAAAAAAC A 117 PASS INDEL;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4082;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104521037 . C CA 186 PASS INDEL;BAVGPOST=0.992;BRSQ=0.504;LDAF=0.0170;AVGPOST=0.9760;RSQ=0.4545;ERATE=0.0037;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104521046 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0025;AVGPOST=0.9969;RSQ=0.5534;ERATE=0.0003;THETA=0.0024;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104521083 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0141;AVGPOST=0.9975;RSQ=0.9221;ERATE=0.0004;THETA=0.0007;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104521205 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.702;LDAF=0.0068;AVGPOST=0.9944;RSQ=0.6663;ERATE=0.0012;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104521207 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0107;AVGPOST=0.9995;RSQ=0.9796;ERATE=0.0003;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104521368 . TG T 121 PASS INDEL;BAVGPOST=0.997;BRSQ=0.777;LDAF=0.0079;AVGPOST=0.9932;RSQ=0.6608;ERATE=0.0006;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104521471 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.829;LDAF=0.0166;AVGPOST=0.9940;RSQ=0.8519;ERATE=0.0006;THETA=0.0008;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 104521522 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.779;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8303;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104521523 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0035;AVGPOST=0.9969;RSQ=0.6649;ERATE=0.0005;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104521549 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.732;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.4806;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104521578 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0124;AVGPOST=0.9992;RSQ=0.9720;ERATE=0.0004;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104521630 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0029;AVGPOST=0.9978;RSQ=0.6896;ERATE=0.0003;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104521696 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.997;LDAF=0.5349;AVGPOST=0.9961;RSQ=0.9943;ERATE=0.0003;THETA=0.0004;AC=1169;AN=2184 GT:DS:GL:BD 0.53525639 1 1 104521762 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4969;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104521849 . TG T 196 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0045;AVGPOST=0.9990;RSQ=0.9090;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104521925 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.2436;AVGPOST=0.9976;RSQ=0.9952;ERATE=0.0003;THETA=0.0007;AC=532;AN=2184 GT:DS:GL:BD 0.24358974 0 1 104521939 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.909;LDAF=0.0060;AVGPOST=0.9995;RSQ=0.9641;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104522037 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.7870;AVGPOST=0.9872;RSQ=0.9797;ERATE=0.0012;THETA=0.0006;AC=1721;AN=2184 GT:DS:GL:BD 0.78800368 1 1 104522088 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.922;LDAF=0.0107;AVGPOST=0.9966;RSQ=0.8682;ERATE=0.0006;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104522138 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6733;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104522284 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.892;LDAF=0.0180;AVGPOST=0.9896;RSQ=0.7968;ERATE=0.0010;THETA=0.0009;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 104522290 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0080;AVGPOST=0.9993;RSQ=0.9631;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104522326 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6542;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104522459 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104522615 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0365;AVGPOST=0.9989;RSQ=0.9870;ERATE=0.0004;THETA=0.0007;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 104522716 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0025;AVGPOST=0.9992;RSQ=0.8705;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104522769 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.795;LDAF=0.0089;AVGPOST=0.9980;RSQ=0.9008;ERATE=0.0006;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104522777 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6669;ERATE=0.0002;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104522872 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.713;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5179;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104522894 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9710;ERATE=0.0002;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104522920 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8005;AVGPOST=0.9988;RSQ=0.9978;ERATE=0.0004;THETA=0.0012;AC=1748;AN=2184 GT:DS:GL:BD 0.80036628 1 1 104522941 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6742;ERATE=0.0002;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104522998 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9998;RSQ=0.9916;ERATE=0.0003;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104523059 . T TA 213 PASS INDEL;BAVGPOST=0.998;BRSQ=0.755;LDAF=0.0092;AVGPOST=0.9915;RSQ=0.6781;ERATE=0.0004;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104523075 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.4544;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104523114 . C CA 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8247;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104523137 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5736;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104523165 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7821;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104523317 . T TA 30 PASS INDEL;BAVGPOST=0.999;BRSQ=0.692;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.5741;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104523409 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7922;AVGPOST=0.9979;RSQ=0.9959;ERATE=0.0004;THETA=0.0015;AC=1729;AN=2184 GT:DS:GL:BD 0.79166669 1 1 104523447 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.933;LDAF=0.0114;AVGPOST=0.9996;RSQ=0.9849;ERATE=0.0003;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104523534 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.969;LDAF=0.0212;AVGPOST=0.9986;RSQ=0.9738;ERATE=0.0003;THETA=0.0014;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 104523559 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4886;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104523644 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0072;AVGPOST=0.9993;RSQ=0.9541;ERATE=0.0003;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104523659 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.863;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.9088;ERATE=0.0002;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104523682 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0044;AVGPOST=0.9993;RSQ=0.9258;ERATE=0.0005;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104523715 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.913;LDAF=0.0496;AVGPOST=0.9944;RSQ=0.9542;ERATE=0.0003;THETA=0.0008;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 104523744 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0116;AVGPOST=0.9992;RSQ=0.9711;ERATE=0.0003;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104523970 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7177;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104523980 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2458;AVGPOST=0.9967;RSQ=0.9934;ERATE=0.0003;THETA=0.0009;AC=538;AN=2184 GT:DS:GL:BD 0.24633700 0 1 104524049 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5620;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104524090 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0118;AVGPOST=0.9993;RSQ=0.9790;ERATE=0.0003;THETA=0.0009;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104524099 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9738;ERATE=0.0002;THETA=0.0038;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104524185 . A AAT 262 PASS INDEL;BAVGPOST=0.997;BRSQ=0.790;LDAF=0.0099;AVGPOST=0.9910;RSQ=0.6443;ERATE=0.0025;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104524266 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8959;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104524427 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.889;LDAF=0.0171;AVGPOST=0.9982;RSQ=0.9563;ERATE=0.0004;THETA=0.0025;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 104524489 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104524594 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8096;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104524654 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.4597;AVGPOST=0.9982;RSQ=0.9972;ERATE=0.0006;THETA=0.0005;AC=1005;AN=2184 GT:DS:GL:BD 0.46016484 0 1 104524672 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1525;AVGPOST=0.9989;RSQ=0.9965;ERATE=0.0003;THETA=0.0005;AC=334;AN=2184 GT:DS:GL:BD 0.15293041 0 1 104524774 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0043;AVGPOST=0.9979;RSQ=0.8240;ERATE=0.0002;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104524776 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0081;AVGPOST=0.9986;RSQ=0.9208;ERATE=0.0005;THETA=0.0009;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104524860 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7246;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104525007 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0028;AVGPOST=0.9960;RSQ=0.4528;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104525018 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0194;AVGPOST=0.9993;RSQ=0.9855;ERATE=0.0002;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 104525209 . CT C 5839 PASS INDEL;BAVGPOST=0.882;BRSQ=0.803;LDAF=0.3187;AVGPOST=0.8986;RSQ=0.8562;ERATE=0.0038;THETA=0.0004;AC=722;AN=2184 GT:DS:GL:BD 0.33058608 0 1 104525231 . C CAGA 10679 PASS INDEL;BAVGPOST=0.888;BRSQ=0.816;LDAF=0.3234;AVGPOST=0.9033;RSQ=0.8666;ERATE=0.0037;THETA=0.0005;AC=730;AN=2184 GT:DS:GL:BD 0.33424908 0 1 104525234 . T TAA 7595 PASS INDEL;BAVGPOST=0.887;BRSQ=0.814;LDAF=0.3095;AVGPOST=0.8685;RSQ=0.8069;ERATE=0.0101;THETA=0.0004;AC=687;AN=2184 GT:DS:GL:BD 0.31456044 0 1 104525235 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9573;ERATE=0.0002;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104525358 . TC T 207 PASS INDEL;BAVGPOST=0.963;BRSQ=0.425;LDAF=0.0663;AVGPOST=0.9176;RSQ=0.4743;ERATE=0.0124;THETA=0.0006;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 104525371 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.739;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.6305;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104525478 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.721;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.4916;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104525493 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.798;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7086;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104525502 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2504;AVGPOST=0.9941;RSQ=0.9900;ERATE=0.0007;THETA=0.0005;AC=547;AN=2184 GT:DS:GL:BD 0.25045788 0 1 104525529 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.702;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.5538;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104525676 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0088;AVGPOST=0.9989;RSQ=0.9430;ERATE=0.0003;THETA=0.0012;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104525850 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.871;LDAF=0.0107;AVGPOST=0.9969;RSQ=0.8909;ERATE=0.0005;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104526254 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.943;BRSQ=0.913;LDAF=0.5859;AVGPOST=0.9309;RSQ=0.9100;ERATE=0.0109;THETA=0.0036;AC=1306;AN=2184 GT:DS:GL:BD 0.59798533 1 1 104526287 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.827;LDAF=0.0169;AVGPOST=0.9926;RSQ=0.8377;ERATE=0.0005;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 104526326 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.686;LDAF=0.0021;AVGPOST=0.9969;RSQ=0.4445;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104526653 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0017;AVGPOST=0.9978;RSQ=0.5886;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104526690 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.945;BRSQ=0.913;LDAF=0.5806;AVGPOST=0.9199;RSQ=0.8926;ERATE=0.0126;THETA=0.0007;AC=1289;AN=2184 GT:DS:GL:BD 0.59020144 1 1 104526802 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0073;AVGPOST=0.9977;RSQ=0.8909;ERATE=0.0003;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104526847 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.916;BRSQ=0.741;LDAF=0.1873;AVGPOST=0.9574;RSQ=0.9068;ERATE=0.0013;THETA=0.0003;AC=417;AN=2184 GT:DS:GL:BD 0.19093406 0 1 104526900 . CTT C 212 PASS INDEL;BAVGPOST=0.929;BRSQ=0.257;LDAF=0.0698;AVGPOST=0.9198;RSQ=0.5409;ERATE=0.0048;THETA=0.0005;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 104527035 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0120;AVGPOST=0.9947;RSQ=0.8059;ERATE=0.0010;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104527181 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0200;AVGPOST=0.9991;RSQ=0.9805;ERATE=0.0004;THETA=0.0004;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 104527243 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.950;LDAF=0.1786;AVGPOST=0.9857;RSQ=0.9619;ERATE=0.0016;THETA=0.0007;AC=393;AN=2184 GT:DS:GL:BD 0.17994505 0 1 104527248 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.673;LDAF=0.0021;AVGPOST=0.9968;RSQ=0.3518;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104527300 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5632;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104527397 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6866;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104527405 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.955;LDAF=0.2390;AVGPOST=0.9870;RSQ=0.9780;ERATE=0.0012;THETA=0.0002;AC=528;AN=2184 GT:DS:GL:BD 0.24175824 0 1 104527437 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7679;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104527439 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6075;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104527522 . CAAG C 65 PASS INDEL;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5522;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104527566 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0039;AVGPOST=0.9993;RSQ=0.9483;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104527787 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.6325;AVGPOST=0.9929;RSQ=0.9907;ERATE=0.0008;THETA=0.0004;AC=1386;AN=2184 GT:DS:GL:BD 0.63461536 1 1 104527795 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0298;AVGPOST=0.9998;RSQ=0.9966;ERATE=0.0003;THETA=0.0007;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 104527847 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.820;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.8223;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104527861 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104527898 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9257;ERATE=0.0002;THETA=0.0019;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104527941 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2496;AVGPOST=0.9984;RSQ=0.9970;ERATE=0.0005;THETA=0.0005;AC=545;AN=2184 GT:DS:GL:BD 0.24954212 0 1 104527946 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.4547;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104527980 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5466;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104527981 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1779;AVGPOST=0.9980;RSQ=0.9953;ERATE=0.0004;THETA=0.0032;AC=389;AN=2184 GT:DS:GL:BD 0.17811355 0 1 104528005 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5782;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104528056 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8453;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104528095 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8303;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104528165 . AAC A 183 PASS INDEL;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6535;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104528201 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8255;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104528208 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2100;AVGPOST=0.9983;RSQ=0.9962;ERATE=0.0003;THETA=0.0003;AC=460;AN=2184 GT:DS:GL:BD 0.21062271 0 1 104528211 rs76535682 TTTA T 36204 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2508;AVGPOST=0.9976;RSQ=0.9958;ERATE=0.0003;THETA=0.0007;AC=546;AN=2184 GT:DS:GL:BD 0.25000000 0 1 104528325 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0049;AVGPOST=0.9987;RSQ=0.8911;ERATE=0.0004;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104528385 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2493;AVGPOST=0.9967;RSQ=0.9950;ERATE=0.0006;THETA=0.0004;AC=545;AN=2184 GT:DS:GL:BD 0.24954212 0 1 104528386 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0039;AVGPOST=0.9989;RSQ=0.8913;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104528489 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0024;AVGPOST=0.9976;RSQ=0.6387;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104528558 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0067;AVGPOST=0.9994;RSQ=0.9590;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104528609 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0021;AVGPOST=0.9990;RSQ=0.8008;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104528670 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.6809;ERATE=0.0004;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104528823 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5159;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104528824 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1766;AVGPOST=0.9993;RSQ=0.9980;ERATE=0.0004;THETA=0.0005;AC=386;AN=2184 GT:DS:GL:BD 0.17673993 0 1 104528828 . ATTC A 295 PASS INDEL;BAVGPOST=0.998;BRSQ=0.593;LDAF=0.0042;AVGPOST=0.9977;RSQ=0.7643;ERATE=0.0005;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104528984 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0352;AVGPOST=0.9987;RSQ=0.9858;ERATE=0.0002;THETA=0.0005;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 104529029 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6601;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104529115 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104529155 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4585;AVGPOST=0.9960;RSQ=0.9947;ERATE=0.0009;THETA=0.0009;AC=1001;AN=2184 GT:DS:GL:BD 0.45833334 0 1 104529176 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4434;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104529265 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.907;LDAF=0.0408;AVGPOST=0.9935;RSQ=0.9362;ERATE=0.0004;THETA=0.0003;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 104529312 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6572;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104529431 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0167;AVGPOST=0.9985;RSQ=0.9592;ERATE=0.0004;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 104529443 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7986;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104529512 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2135;AVGPOST=0.9883;RSQ=0.9753;ERATE=0.0014;THETA=0.0004;AC=463;AN=2184 GT:DS:GL:BD 0.21199633 0 1 104529544 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.615;LDAF=0.0048;AVGPOST=0.9961;RSQ=0.6809;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104529568 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.625;LDAF=0.0031;AVGPOST=0.9957;RSQ=0.4555;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104529642 . GAGT G 350 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0098;AVGPOST=0.9922;RSQ=0.7005;ERATE=0.0005;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104529652 . AG A 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5418;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104530023 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7995;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104530177 . AAAAATAAACAG A 1004 PASS INDEL;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0032;AVGPOST=0.9980;RSQ=0.7736;ERATE=0.0004;THETA=0.0017;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104530486 . A AG 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5095;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104530518 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0043;AVGPOST=0.9989;RSQ=0.9210;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104530627 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104530760 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0066;AVGPOST=0.9967;RSQ=0.8080;ERATE=0.0004;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104530948 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.4743;AVGPOST=0.9921;RSQ=0.9875;ERATE=0.0006;THETA=0.0019;AC=1036;AN=2184 GT:DS:GL:BD 0.47435898 0 1 104530954 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7664;ERATE=0.0005;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104531042 . TG T 454 PASS INDEL;BAVGPOST=0.998;BRSQ=0.931;LDAF=0.0035;AVGPOST=0.9983;RSQ=0.8002;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104531118 . G GT 285 PASS INDEL;BAVGPOST=0.974;BRSQ=0.565;LDAF=0.0427;AVGPOST=0.9545;RSQ=0.5504;ERATE=0.0100;THETA=0.0005;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 104531119 . TC T 1289 PASS INDEL;BAVGPOST=0.956;BRSQ=0.739;LDAF=0.0718;AVGPOST=0.9568;RSQ=0.7760;ERATE=0.0062;THETA=0.0004;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 104531128 . CAT C 403 PASS INDEL;BAVGPOST=0.999;BRSQ=0.835;LDAF=0.0035;AVGPOST=0.9981;RSQ=0.7639;ERATE=0.0005;THETA=0.0044;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104531271 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0037;AVGPOST=0.9984;RSQ=0.8327;ERATE=0.0004;THETA=0.0029;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104531291 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.842;LDAF=0.0031;AVGPOST=0.9982;RSQ=0.7800;ERATE=0.0006;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104531496 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5946;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104531535 . G GA 13 PASS INDEL;BAVGPOST=0.989;BRSQ=0.502;LDAF=0.0158;AVGPOST=0.9793;RSQ=0.4871;ERATE=0.0043;THETA=0.0011;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104531579 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0049;AVGPOST=0.9979;RSQ=0.8185;ERATE=0.0005;THETA=0.0016;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104531591 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.984;LDAF=0.4790;AVGPOST=0.9837;RSQ=0.9743;ERATE=0.0008;THETA=0.0042;AC=1045;AN=2184 GT:DS:GL:BD 0.47847986 0 1 104531598 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0027;AVGPOST=0.9988;RSQ=0.7989;ERATE=0.0005;THETA=0.0022;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104531620 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.972;LDAF=0.0339;AVGPOST=0.9976;RSQ=0.9718;ERATE=0.0004;THETA=0.0233;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 104531766 . GT G 284 PASS INDEL;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0049;AVGPOST=0.9986;RSQ=0.8740;ERATE=0.0003;THETA=0.0074;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104531791 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.701;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8764;ERATE=0.0003;THETA=0.0085;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104531878 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8847;ERATE=0.0003;THETA=0.0054;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104531911 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.879;LDAF=0.0056;AVGPOST=0.9981;RSQ=0.8532;ERATE=0.0003;THETA=0.0026;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104531955 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0141;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104531979 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.565;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4489;ERATE=0.0005;THETA=0.0090;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104532053 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.917;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8692;ERATE=0.0003;THETA=0.0196;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104532104 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0004;THETA=0.0198;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104532270 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.654;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7787;ERATE=0.0003;THETA=0.0182;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104532342 . A AC 16 PASS INDEL;BAVGPOST=0.999;BRSQ=0.682;LDAF=0.0020;AVGPOST=0.9970;RSQ=0.3543;ERATE=0.0009;THETA=0.0136;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104532368 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8519;ERATE=0.0004;THETA=0.0120;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104532377 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0082;AVGPOST=0.9985;RSQ=0.9299;ERATE=0.0004;THETA=0.0110;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104532464 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.866;LDAF=0.0025;AVGPOST=0.9992;RSQ=0.8583;ERATE=0.0004;THETA=0.0159;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104532508 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5313;ERATE=0.0003;THETA=0.0228;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104532607 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5085;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104532632 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.702;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6362;ERATE=0.0003;THETA=0.0136;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104532648 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0037;AVGPOST=0.9990;RSQ=0.8753;ERATE=0.0005;THETA=0.0108;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104533217 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8962;ERATE=0.0003;THETA=0.0046;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104533236 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8782;ERATE=0.0003;THETA=0.0115;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104533257 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104533263 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6195;ERATE=0.0005;THETA=0.0039;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104533339 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7882;ERATE=0.0003;THETA=0.0074;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104533362 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0039;AVGPOST=0.9996;RSQ=0.9615;ERATE=0.0003;THETA=0.0088;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104533526 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0063;AVGPOST=0.9983;RSQ=0.8851;ERATE=0.0005;THETA=0.0082;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104533527 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0104;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104533651 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6749;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104533779 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6037;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104533782 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0037;AVGPOST=0.9972;RSQ=0.6855;ERATE=0.0005;THETA=0.0174;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104534076 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0149;AVGPOST=0.9983;RSQ=0.9518;ERATE=0.0003;THETA=0.0142;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 104534160 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0018;AVGPOST=0.9980;RSQ=0.5044;ERATE=0.0005;THETA=0.0151;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104534321 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4714;ERATE=0.0004;THETA=0.0057;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104534409 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.951;LDAF=0.0055;AVGPOST=0.9983;RSQ=0.8738;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104534419 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0705;AVGPOST=0.9923;RSQ=0.9581;ERATE=0.0003;THETA=0.0004;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 104534466 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8664;ERATE=0.0003;THETA=0.0059;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104534635 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0093;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104534715 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7748;ERATE=0.0003;THETA=0.0069;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104534804 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0086;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104534819 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5389;ERATE=0.0003;THETA=0.0056;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104534864 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7037;AVGPOST=0.9973;RSQ=0.9947;ERATE=0.0007;THETA=0.0004;AC=1537;AN=2184 GT:DS:GL:BD 0.70375460 1 1 104535120 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7731;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104535210 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.713;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7986;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104535219 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104535375 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8515;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104535414 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6510;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104535547 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104535566 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0018;AVGPOST=0.9988;RSQ=0.7009;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104535629 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7431;AVGPOST=0.9995;RSQ=0.9988;ERATE=0.0003;THETA=0.0005;AC=1622;AN=2184 GT:DS:GL:BD 0.74267399 1 1 104535736 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2192;AVGPOST=0.9985;RSQ=0.9965;ERATE=0.0004;THETA=0.0005;AC=477;AN=2184 GT:DS:GL:BD 0.21840659 0 1 104535854 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1421;AVGPOST=0.9950;RSQ=0.9901;ERATE=0.0004;THETA=0.0001;AC=310;AN=2184 GT:DS:GL:BD 0.14194140 0 1 104535859 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5277;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104535986 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.688;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.5787;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104536219 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2956;AVGPOST=0.9980;RSQ=0.9957;ERATE=0.0006;THETA=0.0006;AC=645;AN=2184 GT:DS:GL:BD 0.29532966 0 1 104536273 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.829;LDAF=0.0262;AVGPOST=0.9918;RSQ=0.8892;ERATE=0.0004;THETA=0.0024;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 104536291 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0150;AVGPOST=0.9983;RSQ=0.9512;ERATE=0.0004;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 104536423 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.662;LDAF=0.0023;AVGPOST=0.9973;RSQ=0.4806;ERATE=0.0006;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104536437 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0051;AVGPOST=0.9988;RSQ=0.9189;ERATE=0.0006;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104536448 . A AAG 53 PASS INDEL;BAVGPOST=0.987;BRSQ=0.393;LDAF=0.0354;AVGPOST=0.9500;RSQ=0.4352;ERATE=0.0057;THETA=0.0003;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 104536587 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5517;ERATE=0.0004;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104536703 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.7428;AVGPOST=0.9988;RSQ=0.9970;ERATE=0.0006;THETA=0.0003;AC=1622;AN=2184 GT:DS:GL:BD 0.74267399 1 1 104536891 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.593;LDAF=0.0030;AVGPOST=0.9952;RSQ=0.4213;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104537007 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7862;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104537117 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0102;AVGPOST=0.9981;RSQ=0.9443;ERATE=0.0003;THETA=0.0002;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104537139 rs74793935 AC A 505 PASS INDEL;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0038;AVGPOST=0.9988;RSQ=0.8598;ERATE=0.0004;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104537384 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5758;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104537427 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0036;AVGPOST=0.9995;RSQ=0.9406;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104537531 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.670;LDAF=0.0581;AVGPOST=0.9481;RSQ=0.6207;ERATE=0.0287;THETA=0.0004;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 104537566 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.7984;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104537752 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104537824 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7242;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104537921 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0502;AVGPOST=0.9992;RSQ=0.9939;ERATE=0.0004;THETA=0.0007;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 104538063 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0500;AVGPOST=0.9997;RSQ=0.9975;ERATE=0.0003;THETA=0.0004;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 104538066 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0014;AVGPOST=0.9994;RSQ=0.7913;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104538083 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1440;AVGPOST=0.9993;RSQ=0.9980;ERATE=0.0003;THETA=0.0011;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 104538268 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5921;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104538421 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.6980;AVGPOST=0.9948;RSQ=0.9885;ERATE=0.0015;THETA=0.0002;AC=1526;AN=2184 GT:DS:GL:BD 0.69871795 1 1 104538811 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0029;AVGPOST=0.9951;RSQ=0.3218;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104538869 . C CA 59 PASS INDEL;BAVGPOST=0.981;BRSQ=0.518;LDAF=0.0359;AVGPOST=0.9550;RSQ=0.4974;ERATE=0.0098;THETA=0.0002;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 104538955 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7004;AVGPOST=0.9989;RSQ=0.9979;ERATE=0.0003;THETA=0.0005;AC=1528;AN=2184 GT:DS:GL:BD 0.69963372 1 1 104539022 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.937;LDAF=0.0162;AVGPOST=0.9981;RSQ=0.9578;ERATE=0.0004;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 104539112 . TTC T 513 PASS INDEL;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8634;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104539182 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6960;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104539477 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0051;AVGPOST=0.9979;RSQ=0.8477;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104539483 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7010;AVGPOST=0.9991;RSQ=0.9981;ERATE=0.0004;THETA=0.0010;AC=1530;AN=2184 GT:DS:GL:BD 0.70054942 1 1 104539600 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.879;LDAF=0.0128;AVGPOST=0.9971;RSQ=0.9017;ERATE=0.0004;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104539608 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.686;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6589;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104539690 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.7924;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104539758 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7003;AVGPOST=0.9996;RSQ=0.9991;ERATE=0.0003;THETA=0.0004;AC=1528;AN=2184 GT:DS:GL:BD 0.69963372 1 1 104539804 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104539828 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0208;AVGPOST=0.9979;RSQ=0.9608;ERATE=0.0003;THETA=0.0004;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 104540045 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7744;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104540111 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104540149 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.921;LDAF=0.0095;AVGPOST=0.9973;RSQ=0.8971;ERATE=0.0008;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104540252 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104540346 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0075;AVGPOST=0.9995;RSQ=0.9715;ERATE=0.0005;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104540406 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104540412 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104540515 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0091;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104540528 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104540589 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104540616 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0026;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104540630 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104540709 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104540740 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104540765 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104540767 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7794;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104541143 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0064;AVGPOST=0.9991;RSQ=0.9457;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104541289 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0208;AVGPOST=0.9995;RSQ=0.9938;ERATE=0.0003;THETA=0.0003;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 104541394 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0243;AVGPOST=0.9992;RSQ=0.9895;ERATE=0.0003;THETA=0.0017;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 104541402 . TA T 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.5826;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104541429 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104541635 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104541739 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104541774 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104541799 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8148;ERATE=0.0007;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104541837 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104541855 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0046;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104541969 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6140;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104542013 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7822;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104542355 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0029;AVGPOST=0.9978;RSQ=0.7408;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104542390 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.824;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6306;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104542505 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9244;ERATE=0.0003;THETA=0.0036;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104542509 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6380;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104542631 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.8352;AVGPOST=0.9958;RSQ=0.9889;ERATE=0.0003;THETA=0.0004;AC=1825;AN=2184 GT:DS:GL:BD 0.83562273 1 1 104542764 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6502;ERATE=0.0009;THETA=0.0026;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104542775 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.977;LDAF=0.5912;AVGPOST=0.9833;RSQ=0.9749;ERATE=0.0005;THETA=0.0003;AC=1296;AN=2184 GT:DS:GL:BD 0.59340662 1 1 104542822 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8523;ERATE=0.0003;THETA=0.0045;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104542824 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0024;AVGPOST=0.9983;RSQ=0.7364;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104542880 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104543122 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104543363 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=1.0000;RSQ=0.9920;ERATE=0.0003;THETA=0.0036;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104543389 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9571;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104543506 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0265;AVGPOST=1.0000;RSQ=0.9993;ERATE=0.0003;THETA=0.0008;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 104543585 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.952;LDAF=0.0242;AVGPOST=0.9970;RSQ=0.9547;ERATE=0.0004;THETA=0.0005;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 104543632 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.544;LDAF=0.0020;AVGPOST=0.9980;RSQ=0.6260;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104543849 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.979;LDAF=0.4690;AVGPOST=0.9805;RSQ=0.9699;ERATE=0.0007;THETA=0.0007;AC=1027;AN=2184 GT:DS:GL:BD 0.47023809 0 1 104543990 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.660;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6047;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104544201 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7056;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104544450 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0262;AVGPOST=0.9993;RSQ=0.9898;ERATE=0.0003;THETA=0.0006;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 104544451 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.943;LDAF=0.0318;AVGPOST=0.9949;RSQ=0.9397;ERATE=0.0006;THETA=0.0004;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 104544496 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0027;AVGPOST=0.9981;RSQ=0.7001;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104544514 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0046;AVGPOST=0.9969;RSQ=0.7074;ERATE=0.0014;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104544586 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6065;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104544616 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0265;AVGPOST=1.0000;RSQ=0.9993;ERATE=0.0003;THETA=0.0007;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 104544689 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0211;AVGPOST=0.9998;RSQ=0.9957;ERATE=0.0003;THETA=0.0007;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 104544736 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104544763 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.975;LDAF=0.0236;AVGPOST=0.9989;RSQ=0.9823;ERATE=0.0004;THETA=0.0002;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 104544776 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.8026;AVGPOST=0.9970;RSQ=0.9925;ERATE=0.0005;THETA=0.0003;AC=1754;AN=2184 GT:DS:GL:BD 0.80311358 1 1 104544777 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.8032;AVGPOST=0.9976;RSQ=0.9943;ERATE=0.0003;THETA=0.0005;AC=1755;AN=2184 GT:DS:GL:BD 0.80357140 1 1 104544804 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104544863 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104544868 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104544869 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104544894 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0026;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104544936 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.737;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8689;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104544987 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0004;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104545027 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104545034 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.771;LDAF=0.0041;AVGPOST=0.9957;RSQ=0.5917;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104545103 . ATG A 219 PASS INDEL;BAVGPOST=0.922;BRSQ=0.268;LDAF=0.0948;AVGPOST=0.8846;RSQ=0.5131;ERATE=0.0049;THETA=0.0008;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 104545286 rs71142532 G GAA 4453 PASS INDEL;BAVGPOST=0.758;BRSQ=0.512;LDAF=0.2588;AVGPOST=0.8091;RSQ=0.6564;ERATE=0.0194;THETA=0.0008;AC=535;AN=2184 GT:DS:GL:BD 0.24496336 0 1 104545288 . CAT C 112 PASS INDEL;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5388;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104545535 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9905;ERATE=0.0003;THETA=0.0015;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104545593 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7575;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104545625 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0154;AVGPOST=0.9988;RSQ=0.9718;ERATE=0.0003;THETA=0.0005;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 104545656 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9359;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104545832 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0048;AVGPOST=0.9988;RSQ=0.8924;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104546065 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.931;LDAF=0.4234;AVGPOST=0.9586;RSQ=0.9393;ERATE=0.0228;THETA=0.0005;AC=934;AN=2184 GT:DS:GL:BD 0.42765567 0 1 104546173 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104546196 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.872;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8701;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104546455 . T TA 84 PASS INDEL;BAVGPOST=0.986;BRSQ=0.059;LDAF=0.0449;AVGPOST=0.9385;RSQ=0.4683;ERATE=0.0028;THETA=0.0005;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 104546705 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0024;AVGPOST=0.9992;RSQ=0.8631;ERATE=0.0003;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104546720 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104546744 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104546995 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.893;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9490;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104547050 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.971;LDAF=0.5721;AVGPOST=0.9816;RSQ=0.9700;ERATE=0.0020;THETA=0.0007;AC=1259;AN=2184 GT:DS:GL:BD 0.57646519 1 1 104547319 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4574;ERATE=0.0005;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104547334 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0064;AVGPOST=0.9990;RSQ=0.9391;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104547350 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.4713;AVGPOST=0.9940;RSQ=0.9922;ERATE=0.0011;THETA=0.0008;AC=1027;AN=2184 GT:DS:GL:BD 0.47023809 0 1 104547622 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.933;LDAF=0.0691;AVGPOST=0.9952;RSQ=0.9674;ERATE=0.0005;THETA=0.0009;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 104547811 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8143;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104548020 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104548021 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1013;AVGPOST=0.9977;RSQ=0.9912;ERATE=0.0004;THETA=0.0007;AC=220;AN=2184 GT:DS:GL:BD 0.10073260 0 1 104548237 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.6149;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104548476 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.868;LDAF=0.0081;AVGPOST=0.9988;RSQ=0.9329;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104548606 . AT A 473 PASS INDEL;BAVGPOST=0.884;BRSQ=0.364;LDAF=0.1669;AVGPOST=0.8030;RSQ=0.4102;ERATE=0.0490;THETA=0.0005;AC=208;AN=2184 GT:DS:GL:BD 0.09523810 0 1 104548655 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0354;AVGPOST=0.9981;RSQ=0.9788;ERATE=0.0004;THETA=0.0003;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 104548669 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.1601;AVGPOST=0.9913;RSQ=0.9743;ERATE=0.0005;THETA=0.0006;AC=349;AN=2184 GT:DS:GL:BD 0.15979853 0 1 104548692 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.4694;AVGPOST=0.9929;RSQ=0.9905;ERATE=0.0011;THETA=0.0004;AC=1026;AN=2184 GT:DS:GL:BD 0.46978021 0 1 104548758 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4875;AVGPOST=0.9979;RSQ=0.9968;ERATE=0.0005;THETA=0.0004;AC=1066;AN=2184 GT:DS:GL:BD 0.48809522 0 1 104548900 . T TG 45 PASS INDEL;BAVGPOST=0.997;BRSQ=0.702;LDAF=0.0143;AVGPOST=0.9826;RSQ=0.5147;ERATE=0.0034;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104548924 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.767;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8680;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104549066 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0031;AVGPOST=0.9970;RSQ=0.6058;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104549333 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7529;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104549463 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7000;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104549535 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0007;AVGPOST=0.9989;RSQ=0.3071;ERATE=0.0005;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104549595 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9995;AVGPOST=0.9989;RSQ=0.0708;ERATE=0.0004;THETA=0.0006;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 104549623 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1012;AVGPOST=0.9981;RSQ=0.9919;ERATE=0.0003;THETA=0.0003;AC=219;AN=2184 GT:DS:GL:BD 0.10027473 0 1 104549660 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8216;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104549923 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0063;AVGPOST=0.9977;RSQ=0.8470;ERATE=0.0005;THETA=0.0011;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104550018 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.953;LDAF=0.5157;AVGPOST=0.9488;RSQ=0.9377;ERATE=0.0022;THETA=0.0005;AC=1121;AN=2184 GT:DS:GL:BD 0.51327837 1 1 104550050 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0193;AVGPOST=0.9997;RSQ=0.9925;ERATE=0.0003;THETA=0.0006;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 104550079 . A AC 192 PASS INDEL;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0038;AVGPOST=0.9970;RSQ=0.7044;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104550221 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0170;AVGPOST=0.9993;RSQ=0.9850;ERATE=0.0003;THETA=0.0022;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104550315 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0664;AVGPOST=0.9972;RSQ=0.9837;ERATE=0.0005;THETA=0.0019;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 104550329 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6782;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104550367 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2436;AVGPOST=0.9964;RSQ=0.9925;ERATE=0.0003;THETA=0.0012;AC=533;AN=2184 GT:DS:GL:BD 0.24404761 0 1 104550390 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.944;LDAF=0.0128;AVGPOST=0.9985;RSQ=0.9561;ERATE=0.0003;THETA=0.0036;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104550462 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0078;AVGPOST=0.9997;RSQ=0.9803;ERATE=0.0003;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104550696 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6426;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104550720 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0024;AVGPOST=0.9990;RSQ=0.8378;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104550732 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8681;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104550753 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8675;ERATE=0.0004;THETA=0.0036;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104550812 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8579;ERATE=0.0004;THETA=0.0050;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104550880 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0198;AVGPOST=0.9985;RSQ=0.9742;ERATE=0.0003;THETA=0.0014;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 104550907 . A AT 120 PASS INDEL;BAVGPOST=0.994;BRSQ=0.644;LDAF=0.0097;AVGPOST=0.9911;RSQ=0.6255;ERATE=0.0017;THETA=0.0015;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104551229 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.970;LDAF=0.0342;AVGPOST=0.9950;RSQ=0.9422;ERATE=0.0005;THETA=0.0019;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 104551252 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6125;ERATE=0.0003;THETA=0.0088;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104551413 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.980;LDAF=0.0184;AVGPOST=0.9984;RSQ=0.9660;ERATE=0.0004;THETA=0.0017;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 104551643 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4344;ERATE=0.0006;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104551670 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0085;AVGPOST=0.9984;RSQ=0.9241;ERATE=0.0004;THETA=0.0044;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104551734 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0128;AVGPOST=0.9968;RSQ=0.9068;ERATE=0.0004;THETA=0.0035;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104551743 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0049;AVGPOST=0.9973;RSQ=0.7827;ERATE=0.0004;THETA=0.0077;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104551822 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.723;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7305;ERATE=0.0004;THETA=0.0146;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104551827 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.947;LDAF=0.0087;AVGPOST=0.9986;RSQ=0.9347;ERATE=0.0004;THETA=0.0077;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104551928 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9385;ERATE=0.0003;THETA=0.0083;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104552048 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0029;AVGPOST=0.9988;RSQ=0.8317;ERATE=0.0003;THETA=0.0036;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104552064 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8666;ERATE=0.0011;THETA=0.0061;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104552071 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.969;LDAF=0.0600;AVGPOST=0.9943;RSQ=0.9635;ERATE=0.0021;THETA=0.0061;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 104552118 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.942;LDAF=0.0098;AVGPOST=0.9980;RSQ=0.9107;ERATE=0.0008;THETA=0.0082;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104552159 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8425;ERATE=0.0004;THETA=0.0028;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104552162 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.957;LDAF=0.0214;AVGPOST=0.9962;RSQ=0.9277;ERATE=0.0020;THETA=0.0057;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 104552176 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0106;AVGPOST=0.9984;RSQ=0.9460;ERATE=0.0004;THETA=0.0014;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104552229 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.984;LDAF=0.4083;AVGPOST=0.9815;RSQ=0.9746;ERATE=0.0019;THETA=0.0077;AC=884;AN=2184 GT:DS:GL:BD 0.40476191 0 1 104552417 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0105;AVGPOST=0.9976;RSQ=0.9016;ERATE=0.0007;THETA=0.0018;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104552473 . CTTA C 208 PASS INDEL;BAVGPOST=0.999;BRSQ=0.741;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7363;ERATE=0.0005;THETA=0.0029;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104552518 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104552559 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0104;AVGPOST=0.9990;RSQ=0.9536;ERATE=0.0005;THETA=0.0060;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104552566 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.789;LDAF=0.0043;AVGPOST=0.9983;RSQ=0.8146;ERATE=0.0026;THETA=0.0077;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104552714 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8343;ERATE=0.0003;THETA=0.0040;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104552778 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7604;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104552915 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.580;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.5319;ERATE=0.0005;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104553112 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0026;AVGPOST=0.9975;RSQ=0.5940;ERATE=0.0007;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104553117 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9766;ERATE=0.0003;THETA=0.0010;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104553282 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.674;LDAF=0.0012;AVGPOST=0.9983;RSQ=0.3996;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104553411 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.715;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4857;ERATE=0.0006;THETA=0.0080;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104553468 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.719;LDAF=0.0025;AVGPOST=0.9981;RSQ=0.7197;ERATE=0.0004;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104553587 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.983;LDAF=0.1826;AVGPOST=0.9925;RSQ=0.9806;ERATE=0.0006;THETA=0.0031;AC=397;AN=2184 GT:DS:GL:BD 0.18177655 0 1 104553694 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0083;AVGPOST=0.9987;RSQ=0.9277;ERATE=0.0005;THETA=0.0010;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104553710 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.1836;AVGPOST=0.9953;RSQ=0.9877;ERATE=0.0005;THETA=0.0028;AC=400;AN=2184 GT:DS:GL:BD 0.18315019 0 1 104553824 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104553994 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104554065 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0035;AVGPOST=0.9982;RSQ=0.8145;ERATE=0.0005;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104554080 . CA C 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5465;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104554265 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0222;AVGPOST=0.9988;RSQ=0.9770;ERATE=0.0004;THETA=0.0016;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 104554306 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104554509 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4997;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104554606 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0035;AVGPOST=0.9989;RSQ=0.8529;ERATE=0.0004;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104554609 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0036;AVGPOST=0.9965;RSQ=0.6200;ERATE=0.0008;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104554671 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.702;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.5825;ERATE=0.0005;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104554685 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0044;AVGPOST=0.9985;RSQ=0.8629;ERATE=0.0006;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104554711 . CA C 45 PASS INDEL;BAVGPOST=0.999;BRSQ=0.590;LDAF=0.0020;AVGPOST=0.9974;RSQ=0.4308;ERATE=0.0008;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104554711 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0128;AVGPOST=0.9984;RSQ=0.9591;ERATE=0.0004;THETA=0.0020;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104554759 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5436;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104554762 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6141;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104554825 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6902;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104554975 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104554998 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.957;LDAF=0.0287;AVGPOST=0.9976;RSQ=0.9647;ERATE=0.0003;THETA=0.0010;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 104555038 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.715;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4739;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104555067 . AAT A 161 PASS INDEL;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.6012;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104555123 . AACG A 91 PASS INDEL;BAVGPOST=0.999;BRSQ=0.560;LDAF=0.0025;AVGPOST=0.9971;RSQ=0.5668;ERATE=0.0005;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104555133 . G GTA 85 PASS INDEL;BAVGPOST=1.000;BRSQ=0.746;LDAF=0.0023;AVGPOST=0.9963;RSQ=0.3647;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104555259 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104555368 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0110;AVGPOST=0.9993;RSQ=0.9759;ERATE=0.0003;THETA=0.0007;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104555487 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7286;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104555575 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.570;LDAF=0.0182;AVGPOST=0.9799;RSQ=0.5703;ERATE=0.0061;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104555594 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.829;LDAF=0.0027;AVGPOST=0.9974;RSQ=0.6883;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104555630 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0110;AVGPOST=0.9999;RSQ=0.9944;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104555756 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0209;AVGPOST=0.9997;RSQ=0.9949;ERATE=0.0003;THETA=0.0003;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 104555905 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104555919 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104555991 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0022;AVGPOST=0.9979;RSQ=0.5791;ERATE=0.0007;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104556021 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9133;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104556026 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.951;LDAF=0.0737;AVGPOST=0.9951;RSQ=0.9718;ERATE=0.0005;THETA=0.0004;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 104556040 . G GT 42 PASS INDEL;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6616;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104556104 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.803;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7679;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104556242 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0040;AVGPOST=0.9980;RSQ=0.8397;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104556317 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0024;AVGPOST=0.9985;RSQ=0.7654;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104556325 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104556379 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0156;AVGPOST=0.9984;RSQ=0.9635;ERATE=0.0003;THETA=0.0005;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 104556411 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7541;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104556424 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3230;AVGPOST=0.9977;RSQ=0.9955;ERATE=0.0003;THETA=0.0004;AC=705;AN=2184 GT:DS:GL:BD 0.32280219 0 1 104556511 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0021;AVGPOST=0.9979;RSQ=0.5905;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104556585 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0029;AVGPOST=0.9980;RSQ=0.7375;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104556602 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0034;AVGPOST=0.9973;RSQ=0.6563;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104556823 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3416;AVGPOST=0.9979;RSQ=0.9958;ERATE=0.0005;THETA=0.0004;AC=746;AN=2184 GT:DS:GL:BD 0.34157509 0 1 104556931 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.960;LDAF=0.0275;AVGPOST=0.9978;RSQ=0.9670;ERATE=0.0003;THETA=0.0003;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 104556959 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.556;LDAF=0.0096;AVGPOST=0.9879;RSQ=0.5244;ERATE=0.0022;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104556993 . TATC T 269 PASS INDEL;BAVGPOST=0.979;BRSQ=0.574;LDAF=0.0290;AVGPOST=0.9767;RSQ=0.6874;ERATE=0.0013;THETA=0.0004;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 104556993 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.888;LDAF=0.0624;AVGPOST=0.9721;RSQ=0.8222;ERATE=0.0043;THETA=0.0007;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 104556999 rs56970725 T TATC 1120 PASS INDEL;BAVGPOST=0.917;BRSQ=0.683;LDAF=0.1520;AVGPOST=0.9506;RSQ=0.8635;ERATE=0.0008;THETA=0.0004;AC=342;AN=2184 GT:DS:GL:BD 0.15659341 0 1 104557002 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2074;AVGPOST=0.9948;RSQ=0.9899;ERATE=0.0004;THETA=0.0003;AC=457;AN=2184 GT:DS:GL:BD 0.20924908 0 1 104557252 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2154;AVGPOST=0.9977;RSQ=0.9948;ERATE=0.0005;THETA=0.0004;AC=470;AN=2184 GT:DS:GL:BD 0.21520147 0 1 104557408 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4173;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104557438 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0171;AVGPOST=0.9995;RSQ=0.9875;ERATE=0.0004;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104557454 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2114;AVGPOST=0.9989;RSQ=0.9972;ERATE=0.0004;THETA=0.0003;AC=461;AN=2184 GT:DS:GL:BD 0.21108058 0 1 104557456 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7769;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104557469 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6695;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104557470 . CTT C 41 PASS INDEL;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104557576 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8244;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104557652 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5551;AVGPOST=0.9981;RSQ=0.9972;ERATE=0.0005;THETA=0.0002;AC=1212;AN=2184 GT:DS:GL:BD 0.55494505 1 1 104557680 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9024;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104557684 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5569;AVGPOST=0.9975;RSQ=0.9965;ERATE=0.0006;THETA=0.0004;AC=1216;AN=2184 GT:DS:GL:BD 0.55677658 1 1 104557706 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104557796 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6206;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104557811 . GC G 95 PASS INDEL;BAVGPOST=0.999;BRSQ=0.630;LDAF=0.0020;AVGPOST=0.9982;RSQ=0.5973;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104558023 . TTCAAGCAATTCTCCAGCC T 932 PASS INDEL;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0075;AVGPOST=0.9979;RSQ=0.8845;ERATE=0.0006;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104558136 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0052;AVGPOST=0.9988;RSQ=0.9081;ERATE=0.0004;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104558217 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0037;AVGPOST=0.9973;RSQ=0.6884;ERATE=0.0003;THETA=0.0001;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104558251 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0016;AVGPOST=0.9982;RSQ=0.5672;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104558293 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1146;AVGPOST=0.9989;RSQ=0.9957;ERATE=0.0004;THETA=0.0003;AC=250;AN=2184 GT:DS:GL:BD 0.11446887 0 1 104558359 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0021;AVGPOST=0.9979;RSQ=0.6342;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104558536 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104558688 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1145;AVGPOST=0.9988;RSQ=0.9952;ERATE=0.0004;THETA=0.0004;AC=250;AN=2184 GT:DS:GL:BD 0.11446887 0 1 104558846 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9489;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104558859 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5570;AVGPOST=0.9995;RSQ=0.9992;ERATE=0.0003;THETA=0.0003;AC=1216;AN=2184 GT:DS:GL:BD 0.55677658 1 1 104558877 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0109;AVGPOST=0.9954;RSQ=0.8449;ERATE=0.0004;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104558955 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5510;AVGPOST=0.9976;RSQ=0.9967;ERATE=0.0009;THETA=0.0003;AC=1202;AN=2184 GT:DS:GL:BD 0.55036628 1 1 104559394 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9997;RSQ=0.9670;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104559418 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3420;AVGPOST=0.9997;RSQ=0.9993;ERATE=0.0003;THETA=0.0006;AC=746;AN=2184 GT:DS:GL:BD 0.34157509 0 1 104559693 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2057;AVGPOST=0.9997;RSQ=0.9993;ERATE=0.0003;THETA=0.0002;AC=449;AN=2184 GT:DS:GL:BD 0.20558608 0 1 104559735 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.574;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.7307;ERATE=0.0008;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104559766 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.5530;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104559796 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.821;LDAF=0.0120;AVGPOST=0.9948;RSQ=0.8120;ERATE=0.0005;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104559812 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6792;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104559854 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.727;LDAF=0.0288;AVGPOST=0.9717;RSQ=0.6055;ERATE=0.0097;THETA=0.0003;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 104559976 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0642;AVGPOST=0.9990;RSQ=0.9933;ERATE=0.0004;THETA=0.0003;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 104560030 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5805;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104560073 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.698;LDAF=0.0122;AVGPOST=0.9929;RSQ=0.7738;ERATE=0.0007;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104560133 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4754;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104560172 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3103;AVGPOST=0.9949;RSQ=0.9901;ERATE=0.0006;THETA=0.0005;AC=679;AN=2184 GT:DS:GL:BD 0.31089744 0 1 104560290 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.472;LDAF=0.0016;AVGPOST=0.9976;RSQ=0.3654;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104560399 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0176;AVGPOST=0.9986;RSQ=0.9719;ERATE=0.0004;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104560545 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6126;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104560553 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0155;AVGPOST=0.9979;RSQ=0.9517;ERATE=0.0004;THETA=0.0006;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104560626 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0077;AVGPOST=0.9992;RSQ=0.9571;ERATE=0.0003;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104560695 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.879;LDAF=0.0332;AVGPOST=0.9935;RSQ=0.9247;ERATE=0.0004;THETA=0.0002;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 104560700 . G GA 24 PASS INDEL;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7380;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104560762 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0026;AVGPOST=0.9992;RSQ=0.8582;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104560855 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0163;AVGPOST=0.9974;RSQ=0.9445;ERATE=0.0006;THETA=0.0006;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 104560957 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.8292;AVGPOST=0.9965;RSQ=0.9906;ERATE=0.0005;THETA=0.0004;AC=1810;AN=2184 GT:DS:GL:BD 0.82875460 1 1 104561114 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.8959;AVGPOST=0.9972;RSQ=0.9887;ERATE=0.0003;THETA=0.0004;AC=1955;AN=2184 GT:DS:GL:BD 0.89514655 1 1 104561136 . AC A 148 PASS INDEL;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.8889;ERATE=0.0003;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104561161 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0170;AVGPOST=0.9998;RSQ=0.9934;ERATE=0.0003;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104561242 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0177;AVGPOST=0.9991;RSQ=0.9773;ERATE=0.0003;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 104561246 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.464;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5548;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104561255 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.964;LDAF=0.1662;AVGPOST=0.9831;RSQ=0.9539;ERATE=0.0038;THETA=0.0002;AC=353;AN=2184 GT:DS:GL:BD 0.16163003 0 1 104561521 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0060;AVGPOST=0.9989;RSQ=0.9338;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104561627 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3122;AVGPOST=0.9970;RSQ=0.9945;ERATE=0.0004;THETA=0.0004;AC=683;AN=2184 GT:DS:GL:BD 0.31272894 0 1 104561660 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104561719 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.516;LDAF=0.0036;AVGPOST=0.9971;RSQ=0.6372;ERATE=0.0008;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104561837 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.911;LDAF=0.0102;AVGPOST=0.9962;RSQ=0.8673;ERATE=0.0005;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104561911 . C CA 780 PASS INDEL;BAVGPOST=0.591;BRSQ=0.218;LDAF=0.3883;AVGPOST=0.7036;RSQ=0.4666;ERATE=0.0233;THETA=0.0004;AC=724;AN=2184 GT:DS:GL:BD 0.33150184 0 1 104561944 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.1268;AVGPOST=0.9971;RSQ=0.9908;ERATE=0.0003;THETA=0.0002;AC=279;AN=2184 GT:DS:GL:BD 0.12774725 0 1 104562000 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.494;LDAF=0.0110;AVGPOST=0.9856;RSQ=0.4800;ERATE=0.0012;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104562022 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104562104 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9700;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104562274 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0127;AVGPOST=0.9986;RSQ=0.9500;ERATE=0.0004;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104562344 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.488;LDAF=0.0020;AVGPOST=0.9972;RSQ=0.4502;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104562528 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1295;AVGPOST=0.9953;RSQ=0.9851;ERATE=0.0009;THETA=0.0005;AC=283;AN=2184 GT:DS:GL:BD 0.12957875 0 1 104562541 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.868;LDAF=0.0138;AVGPOST=0.9984;RSQ=0.9508;ERATE=0.0004;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104562609 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.868;LDAF=0.0140;AVGPOST=0.9980;RSQ=0.9385;ERATE=0.0004;THETA=0.0002;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104562616 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.764;LDAF=0.0041;AVGPOST=0.9977;RSQ=0.7609;ERATE=0.0005;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104562655 . TC T 748 PASS INDEL;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0111;AVGPOST=0.9985;RSQ=0.9430;ERATE=0.0005;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104562675 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0142;AVGPOST=0.9979;RSQ=0.9448;ERATE=0.0003;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104562711 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.987;LDAF=0.1566;AVGPOST=0.9956;RSQ=0.9880;ERATE=0.0006;THETA=0.0006;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 104562726 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.944;BRSQ=0.898;LDAF=0.4822;AVGPOST=0.9412;RSQ=0.9104;ERATE=0.0100;THETA=0.0009;AC=1069;AN=2184 GT:DS:GL:BD 0.48946887 0 1 104562799 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104562843 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0146;AVGPOST=0.9985;RSQ=0.9589;ERATE=0.0003;THETA=0.0002;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104562898 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0146;AVGPOST=0.9998;RSQ=0.9944;ERATE=0.0003;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104562918 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0037;AVGPOST=0.9979;RSQ=0.7704;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104562932 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.866;LDAF=0.0213;AVGPOST=0.9894;RSQ=0.7932;ERATE=0.0013;THETA=0.0002;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104562953 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0147;AVGPOST=0.9997;RSQ=0.9903;ERATE=0.0003;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104563304 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7941;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104563388 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104563424 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0148;AVGPOST=0.9995;RSQ=0.9847;ERATE=0.0004;THETA=0.0006;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104563441 rs33998686 C CA 22907 PASS INDEL;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1590;AVGPOST=0.9980;RSQ=0.9943;ERATE=0.0004;THETA=0.0003;AC=348;AN=2184 GT:DS:GL:BD 0.15934066 0 1 104563484 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9761;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104563521 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.5015;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104563593 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0147;AVGPOST=0.9996;RSQ=0.9873;ERATE=0.0004;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104563601 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0530;AVGPOST=0.9976;RSQ=0.9804;ERATE=0.0003;THETA=0.0005;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 104563617 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6443;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104563821 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0149;AVGPOST=0.9994;RSQ=0.9818;ERATE=0.0004;THETA=0.0005;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104563834 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1422;AVGPOST=0.9989;RSQ=0.9969;ERATE=0.0004;THETA=0.0005;AC=311;AN=2184 GT:DS:GL:BD 0.14239927 0 1 104563846 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0018;AVGPOST=0.9977;RSQ=0.5801;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104563854 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.972;LDAF=0.3203;AVGPOST=0.9910;RSQ=0.9833;ERATE=0.0005;THETA=0.0003;AC=694;AN=2184 GT:DS:GL:BD 0.31776556 0 1 104564047 . GT G 359 PASS INDEL;BAVGPOST=0.926;BRSQ=0.697;LDAF=0.1115;AVGPOST=0.9449;RSQ=0.8177;ERATE=0.0010;THETA=0.0005;AC=257;AN=2184 GT:DS:GL:BD 0.11767399 0 1 104564053 rs113677998 TA T 7698 PASS INDEL;BAVGPOST=0.964;BRSQ=0.870;LDAF=0.1522;AVGPOST=0.9918;RSQ=0.9780;ERATE=0.0007;THETA=0.0015;AC=333;AN=2184 GT:DS:GL:BD 0.15247253 0 1 104564054 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.659;LDAF=0.0233;AVGPOST=0.9800;RSQ=0.6934;ERATE=0.0015;THETA=0.0007;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 104564172 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.814;LDAF=0.0350;AVGPOST=0.9824;RSQ=0.8095;ERATE=0.0018;THETA=0.0027;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 104564232 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.900;LDAF=0.0172;AVGPOST=0.9941;RSQ=0.8781;ERATE=0.0008;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104564279 rs71281133 G GA 9392 PASS INDEL;BAVGPOST=0.991;BRSQ=0.968;LDAF=0.1315;AVGPOST=0.9916;RSQ=0.9735;ERATE=0.0015;THETA=0.0003;AC=287;AN=2184 GT:DS:GL:BD 0.13141026 0 1 104564282 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.763;LDAF=0.0117;AVGPOST=0.9910;RSQ=0.7034;ERATE=0.0009;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104564283 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1279;AVGPOST=0.9977;RSQ=0.9921;ERATE=0.0005;THETA=0.0005;AC=279;AN=2184 GT:DS:GL:BD 0.12774725 0 1 104564430 . AC A 149 PASS INDEL;BAVGPOST=0.994;BRSQ=0.655;LDAF=0.0035;AVGPOST=0.9983;RSQ=0.7744;ERATE=0.0004;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104564462 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0116;AVGPOST=0.9995;RSQ=0.9808;ERATE=0.0003;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104564464 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0035;AVGPOST=0.9996;RSQ=0.9622;ERATE=0.0003;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104564560 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7131;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104564564 . GAC G 415 PASS INDEL;BAVGPOST=0.996;BRSQ=0.720;LDAF=0.0058;AVGPOST=0.9966;RSQ=0.7486;ERATE=0.0005;THETA=0.0013;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104564584 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0147;AVGPOST=0.9997;RSQ=0.9900;ERATE=0.0003;THETA=0.0037;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104564777 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0154;AVGPOST=0.9993;RSQ=0.9818;ERATE=0.0003;THETA=0.0010;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 104564941 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0176;AVGPOST=0.9986;RSQ=0.9639;ERATE=0.0004;THETA=0.0018;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104564974 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8266;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104565117 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.991;LDAF=0.3747;AVGPOST=0.9926;RSQ=0.9890;ERATE=0.0005;THETA=0.0003;AC=816;AN=2184 GT:DS:GL:BD 0.37362638 0 1 104565150 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0043;AVGPOST=0.9971;RSQ=0.7198;ERATE=0.0009;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104565158 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0511;AVGPOST=0.9989;RSQ=0.9918;ERATE=0.0004;THETA=0.0003;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 104565201 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.5671;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104565260 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0020;AVGPOST=0.9978;RSQ=0.5284;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104565343 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8622;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104565350 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.817;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8254;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104565371 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7077;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104565530 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0144;AVGPOST=0.9993;RSQ=0.9796;ERATE=0.0003;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 104565721 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5918;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104566017 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.738;LDAF=0.0017;AVGPOST=0.9987;RSQ=0.6722;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104566049 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.978;LDAF=0.0311;AVGPOST=0.9986;RSQ=0.9832;ERATE=0.0005;THETA=0.0004;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 104566135 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0023;AVGPOST=0.9996;RSQ=0.9166;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104566163 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8236;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104566251 . CA C 69 PASS INDEL;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5136;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104566452 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0037;AVGPOST=0.9989;RSQ=0.8654;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104566490 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.693;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8677;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104566505 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9977;RSQ=0.5898;ERATE=0.0008;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104566605 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0312;AVGPOST=0.9992;RSQ=0.9906;ERATE=0.0004;THETA=0.0003;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 104566627 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9113;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104566715 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0170;AVGPOST=0.9995;RSQ=0.9872;ERATE=0.0003;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104566744 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0181;AVGPOST=0.9988;RSQ=0.9746;ERATE=0.0004;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 104566770 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8261;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104566817 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.815;LDAF=0.0058;AVGPOST=0.9975;RSQ=0.8135;ERATE=0.0004;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104566943 . AG A 70517 PASS INDEL;BAVGPOST=0.990;BRSQ=0.985;LDAF=0.5700;AVGPOST=0.9929;RSQ=0.9907;ERATE=0.0008;THETA=0.0003;AC=1249;AN=2184 GT:DS:GL:BD 0.57188642 1 1 104566984 . TC T 70271 PASS INDEL;BAVGPOST=0.990;BRSQ=0.986;LDAF=0.5668;AVGPOST=0.9910;RSQ=0.9880;ERATE=0.0016;THETA=0.0003;AC=1242;AN=2184 GT:DS:GL:BD 0.56868130 1 1 104566990 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.969;LDAF=0.0882;AVGPOST=0.9880;RSQ=0.9463;ERATE=0.0004;THETA=0.0002;AC=186;AN=2184 GT:DS:GL:BD 0.08516484 0 1 104567076 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0022;AVGPOST=0.9998;RSQ=0.9621;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104567095 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.653;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.5103;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104567114 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5729;AVGPOST=0.9984;RSQ=0.9975;ERATE=0.0006;THETA=0.0005;AC=1252;AN=2184 GT:DS:GL:BD 0.57326007 1 1 104567139 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8141;AVGPOST=0.9987;RSQ=0.9964;ERATE=0.0003;THETA=0.0003;AC=1780;AN=2184 GT:DS:GL:BD 0.81501830 1 1 104567223 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104567354 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0025;AVGPOST=0.9994;RSQ=0.8972;ERATE=0.0005;THETA=0.0028;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104567454 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7270;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104567525 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.478;LDAF=0.0029;AVGPOST=0.9985;RSQ=0.7558;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104567849 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7767;ERATE=0.0003;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104567886 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6913;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104567930 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104568017 . TA T 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5621;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104568031 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8655;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104568056 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0072;AVGPOST=0.9893;RSQ=0.4332;ERATE=0.0022;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104568115 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7459;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104568169 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0083;AVGPOST=0.9999;RSQ=0.9920;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104568181 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104568320 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104568361 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0189;AVGPOST=0.9990;RSQ=0.9791;ERATE=0.0004;THETA=0.0005;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 104568411 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0074;AVGPOST=0.9989;RSQ=0.9433;ERATE=0.0003;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104568413 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0095;AVGPOST=0.9996;RSQ=0.9838;ERATE=0.0003;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104568414 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.8033;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104568614 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104568629 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0013;AVGPOST=0.9996;RSQ=0.8876;ERATE=0.0007;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104568642 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0324;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 104568678 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104568714 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.729;LDAF=0.0495;AVGPOST=0.9559;RSQ=0.6357;ERATE=0.0120;THETA=0.0022;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 104568934 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0290;AVGPOST=0.9961;RSQ=0.9486;ERATE=0.0005;THETA=0.0006;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 104568969 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.653;LDAF=0.0183;AVGPOST=0.9785;RSQ=0.5029;ERATE=0.0065;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104568983 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0073;AVGPOST=0.9980;RSQ=0.8847;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104569065 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104569119 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1698;AVGPOST=0.9986;RSQ=0.9956;ERATE=0.0004;THETA=0.0005;AC=371;AN=2184 GT:DS:GL:BD 0.16987179 0 1 104569159 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104569191 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4022;AVGPOST=0.9971;RSQ=0.9960;ERATE=0.0003;THETA=0.0006;AC=878;AN=2184 GT:DS:GL:BD 0.40201464 0 1 104569322 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0354;AVGPOST=0.9975;RSQ=0.9741;ERATE=0.0005;THETA=0.0007;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 104569377 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8635;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104569418 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104569472 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.758;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104569617 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8540;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104569700 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104569708 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104569962 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6388;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104569963 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104570014 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0025;AVGPOST=0.9994;RSQ=0.8939;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104570032 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0236;AVGPOST=0.9993;RSQ=0.9871;ERATE=0.0003;THETA=0.0003;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104570163 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0068;AVGPOST=0.9993;RSQ=0.9507;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104570289 . CTT C 1865 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0241;AVGPOST=0.9984;RSQ=0.9708;ERATE=0.0003;THETA=0.0003;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104570401 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.728;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4545;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104570452 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0234;AVGPOST=0.9998;RSQ=0.9963;ERATE=0.0003;THETA=0.0003;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104570602 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.645;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6094;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104570632 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0234;AVGPOST=0.9998;RSQ=0.9953;ERATE=0.0003;THETA=0.0005;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104570638 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0235;AVGPOST=0.9996;RSQ=0.9920;ERATE=0.0003;THETA=0.0003;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104570646 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0025;AVGPOST=0.9993;RSQ=0.8707;ERATE=0.0005;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104570753 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104570775 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0240;AVGPOST=0.9986;RSQ=0.9788;ERATE=0.0003;THETA=0.0009;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104570785 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5274;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104570786 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2161;AVGPOST=0.9983;RSQ=0.9960;ERATE=0.0004;THETA=0.0003;AC=471;AN=2184 GT:DS:GL:BD 0.21565934 0 1 104570823 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0117;AVGPOST=0.9978;RSQ=0.9250;ERATE=0.0003;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104570839 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0235;AVGPOST=0.9996;RSQ=0.9925;ERATE=0.0003;THETA=0.0005;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104570884 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.8652;AVGPOST=0.9985;RSQ=0.9954;ERATE=0.0004;THETA=0.0004;AC=1889;AN=2184 GT:DS:GL:BD 0.86492676 1 1 104570959 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0234;AVGPOST=0.9999;RSQ=0.9981;ERATE=0.0003;THETA=0.0005;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104571078 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9411;ERATE=0.0005;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104571099 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0144;AVGPOST=0.9994;RSQ=0.9813;ERATE=0.0003;THETA=0.0007;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 104571114 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6082;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104571122 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5938;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104571141 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0079;AVGPOST=0.9996;RSQ=0.9821;ERATE=0.0003;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104571227 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104571278 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7094;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104571287 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0236;AVGPOST=0.9994;RSQ=0.9887;ERATE=0.0003;THETA=0.0003;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104571486 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0081;AVGPOST=0.9989;RSQ=0.9457;ERATE=0.0004;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104571574 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0032;AVGPOST=0.9992;RSQ=0.8811;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104571581 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0078;AVGPOST=0.9988;RSQ=0.9353;ERATE=0.0004;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104571672 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6457;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104571724 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6086;AVGPOST=0.9965;RSQ=0.9945;ERATE=0.0007;THETA=0.0004;AC=1331;AN=2184 GT:DS:GL:BD 0.60943222 1 1 104571815 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7431;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104571828 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.6106;AVGPOST=0.9910;RSQ=0.9871;ERATE=0.0013;THETA=0.0007;AC=1333;AN=2184 GT:DS:GL:BD 0.61034799 1 1 104571881 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.984;LDAF=0.8903;AVGPOST=0.9924;RSQ=0.9733;ERATE=0.0007;THETA=0.0005;AC=1942;AN=2184 GT:DS:GL:BD 0.88919413 1 1 104571911 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0024;AVGPOST=0.9984;RSQ=0.7092;ERATE=0.0006;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104571965 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9607;ERATE=0.0003;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104571978 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4736;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104572053 . C CA 96 PASS INDEL;BAVGPOST=0.999;BRSQ=0.637;LDAF=0.0045;AVGPOST=0.9954;RSQ=0.5625;ERATE=0.0008;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104572120 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4151;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104572138 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8190;ERATE=0.0003;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104572229 . CTCTT C 57559 PASS INDEL;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.5161;AVGPOST=0.9917;RSQ=0.9890;ERATE=0.0009;THETA=0.0010;AC=1128;AN=2184 GT:DS:GL:BD 0.51648355 1 1 104572248 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0023;AVGPOST=0.9988;RSQ=0.7791;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104572353 . AC A 1046 PASS INDEL;BAVGPOST=0.997;BRSQ=0.939;LDAF=0.0236;AVGPOST=0.9990;RSQ=0.9798;ERATE=0.0005;THETA=0.0005;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104572419 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.771;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.8974;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104572582 . T TA 833 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0245;AVGPOST=0.9991;RSQ=0.9830;ERATE=0.0004;THETA=0.0006;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 104572630 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.942;LDAF=0.0269;AVGPOST=0.9959;RSQ=0.9336;ERATE=0.0009;THETA=0.0005;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 104572679 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.721;LDAF=0.0064;AVGPOST=0.9931;RSQ=0.5910;ERATE=0.0014;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104572750 . A AT 118 PASS INDEL;BAVGPOST=0.998;BRSQ=0.616;LDAF=0.0047;AVGPOST=0.9960;RSQ=0.6491;ERATE=0.0006;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104572791 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.939;LDAF=0.0234;AVGPOST=0.9998;RSQ=0.9953;ERATE=0.0003;THETA=0.0005;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104572870 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0023;AVGPOST=0.9976;RSQ=0.6293;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104573021 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.693;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7624;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104573084 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0077;AVGPOST=0.9975;RSQ=0.8919;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104573241 . T TA 28 PASS INDEL;BAVGPOST=0.998;BRSQ=0.504;LDAF=0.0037;AVGPOST=0.9963;RSQ=0.6166;ERATE=0.0007;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104573290 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.7252;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104573345 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0044;AVGPOST=0.9985;RSQ=0.8679;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104573435 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9703;ERATE=0.0003;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104573437 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.740;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6016;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104573514 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0234;AVGPOST=0.9998;RSQ=0.9964;ERATE=0.0003;THETA=0.0004;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104573532 . GT G 47 PASS INDEL;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7782;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104573544 . T TC 1417 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0238;AVGPOST=0.9990;RSQ=0.9812;ERATE=0.0004;THETA=0.0009;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104573598 . G GCCC 2333 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0250;AVGPOST=0.9974;RSQ=0.9581;ERATE=0.0005;THETA=0.0012;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 104573837 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0038;AVGPOST=0.9995;RSQ=0.9386;ERATE=0.0003;THETA=0.0016;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104573872 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.930;LDAF=0.0237;AVGPOST=0.9991;RSQ=0.9826;ERATE=0.0004;THETA=0.0008;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104573969 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.8654;AVGPOST=0.9972;RSQ=0.9930;ERATE=0.0003;THETA=0.0007;AC=1891;AN=2184 GT:DS:GL:BD 0.86584246 1 1 104573970 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0826;AVGPOST=0.9973;RSQ=0.9861;ERATE=0.0004;THETA=0.0007;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 104573975 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.961;LDAF=0.0203;AVGPOST=0.9996;RSQ=0.9922;ERATE=0.0003;THETA=0.0007;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 104574045 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0234;AVGPOST=0.9998;RSQ=0.9963;ERATE=0.0003;THETA=0.0010;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104574173 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0036;AVGPOST=0.9992;RSQ=0.9095;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104574213 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5418;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104574374 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.736;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7646;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104574412 . CAT C 2246 PASS INDEL;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0244;AVGPOST=0.9987;RSQ=0.9825;ERATE=0.0003;THETA=0.0005;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 104574436 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0271;AVGPOST=0.9964;RSQ=0.9493;ERATE=0.0007;THETA=0.0005;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 104574445 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9390;ERATE=0.0004;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104574471 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0021;AVGPOST=0.9977;RSQ=0.5675;ERATE=0.0006;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104574706 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.731;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104574731 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.722;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8552;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104574772 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6850;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104574862 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0304;AVGPOST=0.9995;RSQ=0.9928;ERATE=0.0003;THETA=0.0008;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 104574964 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5717;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104575069 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.688;LDAF=0.0145;AVGPOST=0.9864;RSQ=0.6536;ERATE=0.0049;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104575093 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.968;LDAF=0.0344;AVGPOST=0.9973;RSQ=0.9701;ERATE=0.0004;THETA=0.0005;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 104575096 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9618;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104575240 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0066;AVGPOST=0.9938;RSQ=0.6646;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104575272 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9997;RSQ=0.9784;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104575428 . TAA T 256 PASS INDEL;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104575576 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5636;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104575678 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0131;AVGPOST=0.9994;RSQ=0.9853;ERATE=0.0003;THETA=0.0002;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104576024 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104576098 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0090;AVGPOST=0.9986;RSQ=0.9286;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104576269 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0004;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104576273 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.829;LDAF=0.0055;AVGPOST=0.9948;RSQ=0.6419;ERATE=0.0013;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104576312 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.938;LDAF=0.1004;AVGPOST=0.9884;RSQ=0.9509;ERATE=0.0007;THETA=0.0005;AC=218;AN=2184 GT:DS:GL:BD 0.09981685 0 1 104576795 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0067;AVGPOST=0.9972;RSQ=0.8297;ERATE=0.0004;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104576833 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.876;LDAF=0.0088;AVGPOST=0.9972;RSQ=0.8769;ERATE=0.0005;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104576907 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.703;LDAF=0.0025;AVGPOST=0.9987;RSQ=0.7850;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104576967 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.906;LDAF=0.0107;AVGPOST=0.9973;RSQ=0.8950;ERATE=0.0004;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104576988 . CA C 71 PASS INDEL;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5730;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104577086 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104577118 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8540;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104577137 . TA T 14 PASS INDEL;BAVGPOST=0.999;BRSQ=0.787;LDAF=0.0033;AVGPOST=0.9963;RSQ=0.5671;ERATE=0.0015;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104577268 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5492;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104577302 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7279;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104577341 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4472;AVGPOST=0.9984;RSQ=0.9973;ERATE=0.0004;THETA=0.0003;AC=977;AN=2184 GT:DS:GL:BD 0.44734433 0 1 104577402 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6404;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104577403 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.662;LDAF=0.0033;AVGPOST=0.9976;RSQ=0.6966;ERATE=0.0006;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104577454 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0028;AVGPOST=0.9995;RSQ=0.9124;ERATE=0.0004;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104577530 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0146;AVGPOST=0.9982;RSQ=0.9602;ERATE=0.0005;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104577531 . TTG T 48 PASS INDEL;BAVGPOST=1.000;BRSQ=0.758;LDAF=0.0040;AVGPOST=0.9978;RSQ=0.7647;ERATE=0.0006;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104577580 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8637;ERATE=0.0003;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104577643 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.682;LDAF=0.0122;AVGPOST=0.9936;RSQ=0.7893;ERATE=0.0003;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104577779 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.850;LDAF=0.0055;AVGPOST=0.9979;RSQ=0.8331;ERATE=0.0005;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104577953 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2462;AVGPOST=0.9982;RSQ=0.9958;ERATE=0.0005;THETA=0.0003;AC=536;AN=2184 GT:DS:GL:BD 0.24542125 0 1 104578097 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0088;AVGPOST=0.9989;RSQ=0.9488;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104578378 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4507;AVGPOST=0.9981;RSQ=0.9972;ERATE=0.0004;THETA=0.0005;AC=984;AN=2184 GT:DS:GL:BD 0.45054945 0 1 104578464 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=0.9995;RSQ=0.9613;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104578473 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104578753 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104578816 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104578843 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.813;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.8195;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104578860 . T TA 72 PASS INDEL;BAVGPOST=1.000;BRSQ=0.756;LDAF=0.0026;AVGPOST=0.9978;RSQ=0.6301;ERATE=0.0007;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104579004 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0059;AVGPOST=0.9946;RSQ=0.6346;ERATE=0.0004;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104579027 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.909;LDAF=0.0164;AVGPOST=0.9958;RSQ=0.8998;ERATE=0.0008;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 104579176 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104579356 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0014;AVGPOST=0.9994;RSQ=0.8228;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104579406 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.6023;AVGPOST=0.9896;RSQ=0.9847;ERATE=0.0028;THETA=0.0004;AC=1319;AN=2184 GT:DS:GL:BD 0.60393775 1 1 104579443 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0068;AVGPOST=0.9994;RSQ=0.9602;ERATE=0.0004;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104579468 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0924;AVGPOST=0.9985;RSQ=0.9933;ERATE=0.0004;THETA=0.0005;AC=201;AN=2184 GT:DS:GL:BD 0.09203297 0 1 104579515 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.782;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.6533;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104579540 . GTAATGACA G 891 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=0.9990;RSQ=0.9279;ERATE=0.0004;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104579560 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0926;AVGPOST=0.9977;RSQ=0.9892;ERATE=0.0008;THETA=0.0033;AC=201;AN=2184 GT:DS:GL:BD 0.09203297 0 1 104579640 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0183;AVGPOST=0.9950;RSQ=0.8873;ERATE=0.0005;THETA=0.0007;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 104579679 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.0993;AVGPOST=0.9972;RSQ=0.9893;ERATE=0.0005;THETA=0.0003;AC=217;AN=2184 GT:DS:GL:BD 0.09935898 0 1 104579757 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.460;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.5786;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104579821 . A AT 569 PASS INDEL;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0114;AVGPOST=0.9943;RSQ=0.8040;ERATE=0.0006;THETA=0.0009;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104579879 . T TAAG 628 PASS INDEL;BAVGPOST=0.998;BRSQ=0.899;LDAF=0.0094;AVGPOST=0.9947;RSQ=0.7920;ERATE=0.0005;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104579882 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104579998 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0019;AVGPOST=0.9992;RSQ=0.8119;ERATE=0.0002;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104580030 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0058;AVGPOST=0.9993;RSQ=0.9443;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104580183 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0034;AVGPOST=0.9964;RSQ=0.6362;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104580191 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6318;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104580197 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0279;AVGPOST=0.9998;RSQ=0.9962;ERATE=0.0002;THETA=0.0004;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 104580237 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0036;AVGPOST=0.9988;RSQ=0.8641;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104580256 . TA T 104 PASS INDEL;BAVGPOST=0.999;BRSQ=0.631;LDAF=0.0030;AVGPOST=0.9975;RSQ=0.6772;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104580321 . ATGT A 26 PASS INDEL;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4848;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104580625 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9517;ERATE=0.0002;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104580664 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1481;AVGPOST=0.9976;RSQ=0.9945;ERATE=0.0003;THETA=0.0003;AC=324;AN=2184 GT:DS:GL:BD 0.14835165 0 1 104580777 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104581078 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0047;AVGPOST=0.9989;RSQ=0.9042;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104581206 rs67376772 A AT 12101 PASS INDEL;BAVGPOST=0.994;BRSQ=0.982;LDAF=0.1500;AVGPOST=0.9872;RSQ=0.9571;ERATE=0.0009;THETA=0.0005;AC=324;AN=2184 GT:DS:GL:BD 0.14835165 0 1 104581216 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0019;AVGPOST=0.9994;RSQ=0.8614;ERATE=0.0002;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104581261 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.4570;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104581303 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104581336 . TAGGC T 1704 PASS INDEL;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0081;AVGPOST=0.9984;RSQ=0.9323;ERATE=0.0002;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104581351 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0289;AVGPOST=0.9989;RSQ=0.9833;ERATE=0.0004;THETA=0.0005;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 104581462 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.6878;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104581583 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0021;AVGPOST=0.9977;RSQ=0.5514;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104581616 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0839;AVGPOST=0.9993;RSQ=0.9963;ERATE=0.0003;THETA=0.0004;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 104581691 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0031;AVGPOST=0.9979;RSQ=0.7045;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104581754 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0002;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104581755 . T TG 41 PASS INDEL;BAVGPOST=1.000;BRSQ=0.665;LDAF=0.0053;AVGPOST=0.9915;RSQ=0.3938;ERATE=0.0007;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104581844 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0130;AVGPOST=0.9988;RSQ=0.9733;ERATE=0.0003;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104581925 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.606;LDAF=0.0025;AVGPOST=0.9980;RSQ=0.6683;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104581938 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.947;LDAF=0.1433;AVGPOST=0.9931;RSQ=0.9801;ERATE=0.0004;THETA=0.0006;AC=309;AN=2184 GT:DS:GL:BD 0.14148352 0 1 104581939 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0024;AVGPOST=0.9981;RSQ=0.7710;ERATE=0.0002;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104581997 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0112;AVGPOST=0.9996;RSQ=0.9821;ERATE=0.0004;THETA=0.0007;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104582308 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0041;AVGPOST=0.9999;RSQ=0.9894;ERATE=0.0002;THETA=0.0024;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104582384 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9144;AVGPOST=0.9965;RSQ=0.9823;ERATE=0.0003;THETA=0.0007;AC=1997;AN=2184 GT:DS:GL:BD 0.91437727 1 1 104582415 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0027;AVGPOST=0.9996;RSQ=0.9413;ERATE=0.0002;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104582527 rs66734998 AC A 21830 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1332;AVGPOST=0.9986;RSQ=0.9960;ERATE=0.0003;THETA=0.0003;AC=291;AN=2184 GT:DS:GL:BD 0.13324176 0 1 104582617 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4554;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104582666 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0116;AVGPOST=0.9993;RSQ=0.9710;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104582673 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.980;LDAF=0.0658;AVGPOST=0.9964;RSQ=0.9800;ERATE=0.0003;THETA=0.0004;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 104582701 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7735;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104582723 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.0931;AVGPOST=0.9985;RSQ=0.9938;ERATE=0.0004;THETA=0.0005;AC=203;AN=2184 GT:DS:GL:BD 0.09294872 0 1 104582775 . T TTAG 1508 PASS INDEL;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0044;AVGPOST=0.9985;RSQ=0.8471;ERATE=0.0005;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104582852 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.4262;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104582946 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4932;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104583063 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0055;AVGPOST=0.9976;RSQ=0.8463;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104583306 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104583356 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104583448 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9741;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104583585 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0125;AVGPOST=0.9996;RSQ=0.9870;ERATE=0.0003;THETA=0.0002;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104583641 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.630;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7461;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104583667 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6599;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104583796 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2862;AVGPOST=0.9985;RSQ=0.9969;ERATE=0.0003;THETA=0.0003;AC=624;AN=2184 GT:DS:GL:BD 0.28571430 0 1 104583848 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.8180;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104583973 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8039;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104584009 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7986;ERATE=0.0002;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104584024 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0070;AVGPOST=0.9996;RSQ=0.9783;ERATE=0.0002;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104584140 . CT C 144 PASS INDEL;BAVGPOST=0.985;BRSQ=0.459;LDAF=0.0373;AVGPOST=0.9517;RSQ=0.4979;ERATE=0.0060;THETA=0.0002;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 104584355 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9333;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104584510 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.727;LDAF=0.0025;AVGPOST=0.9978;RSQ=0.5911;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104584543 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.7238;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104584827 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.9221;ERATE=0.0002;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104584831 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.554;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6649;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104584860 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2238;AVGPOST=0.9952;RSQ=0.9903;ERATE=0.0006;THETA=0.0004;AC=486;AN=2184 GT:DS:GL:BD 0.22252747 0 1 104584912 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0102;AVGPOST=0.9987;RSQ=0.9474;ERATE=0.0004;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104584916 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.920;LDAF=0.0113;AVGPOST=0.9967;RSQ=0.8797;ERATE=0.0008;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104584957 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8664;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104585006 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.976;LDAF=0.1179;AVGPOST=0.9934;RSQ=0.9745;ERATE=0.0007;THETA=0.0005;AC=256;AN=2184 GT:DS:GL:BD 0.11721612 0 1 104585037 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.480;LDAF=0.0036;AVGPOST=0.9963;RSQ=0.5926;ERATE=0.0007;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104585123 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0069;AVGPOST=0.9998;RSQ=0.9873;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104585180 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8177;ERATE=0.0003;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104585222 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0035;AVGPOST=0.9984;RSQ=0.8423;ERATE=0.0002;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104585274 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1083;AVGPOST=0.9986;RSQ=0.9933;ERATE=0.0003;THETA=0.0004;AC=237;AN=2184 GT:DS:GL:BD 0.10851648 0 1 104585284 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104585364 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5494;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104585446 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6074;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104585511 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7052;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104585596 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.986;LDAF=0.1075;AVGPOST=0.9984;RSQ=0.9925;ERATE=0.0003;THETA=0.0004;AC=236;AN=2184 GT:DS:GL:BD 0.10805861 0 1 104585638 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.6475;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104585792 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.3255;AVGPOST=0.9959;RSQ=0.9925;ERATE=0.0003;THETA=0.0004;AC=710;AN=2184 GT:DS:GL:BD 0.32509157 0 1 104585833 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1560;AVGPOST=0.9991;RSQ=0.9969;ERATE=0.0004;THETA=0.0004;AC=341;AN=2184 GT:DS:GL:BD 0.15613553 0 1 104585866 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9073;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104585924 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.636;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8702;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104585926 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1558;AVGPOST=0.9979;RSQ=0.9931;ERATE=0.0006;THETA=0.0003;AC=341;AN=2184 GT:DS:GL:BD 0.15613553 0 1 104585946 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104586043 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0022;AVGPOST=0.9974;RSQ=0.5417;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104586184 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0122;AVGPOST=0.9993;RSQ=0.9750;ERATE=0.0003;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104586196 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5574;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104586246 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6968;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104586325 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104586499 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.7145;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104586519 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104586531 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.708;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9682;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104586569 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.7651;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104586571 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.0403;AVGPOST=0.9997;RSQ=0.9969;ERATE=0.0002;THETA=0.0020;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 104586650 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0152;AVGPOST=0.9996;RSQ=0.9899;ERATE=0.0002;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 104586665 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0097;AVGPOST=0.9999;RSQ=0.9935;ERATE=0.0002;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104586724 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104586739 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8316;ERATE=0.0002;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104586751 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6043;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104587072 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6299;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104587208 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0052;AVGPOST=0.9991;RSQ=0.9285;ERATE=0.0002;THETA=0.0020;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104587254 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0114;AVGPOST=0.9980;RSQ=0.9333;ERATE=0.0003;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104587400 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.974;LDAF=0.0306;AVGPOST=0.9968;RSQ=0.9569;ERATE=0.0004;THETA=0.0005;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 104587511 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.765;LDAF=0.0042;AVGPOST=0.9977;RSQ=0.7851;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104587548 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7817;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104587558 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0129;AVGPOST=0.9995;RSQ=0.9828;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104587578 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5277;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104587644 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.745;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104587744 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4583;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104588139 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7102;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104588169 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0049;AVGPOST=0.9973;RSQ=0.7664;ERATE=0.0004;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104588245 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0038;AVGPOST=0.9991;RSQ=0.9141;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104588262 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0168;AVGPOST=0.9990;RSQ=0.9753;ERATE=0.0003;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 104588290 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104588389 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8564;ERATE=0.0004;THETA=0.0028;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104588550 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0303;AVGPOST=0.9989;RSQ=0.9876;ERATE=0.0003;THETA=0.0004;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 104588583 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0306;AVGPOST=0.9990;RSQ=0.9881;ERATE=0.0003;THETA=0.0008;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 104588599 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0041;AVGPOST=0.9983;RSQ=0.8340;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104588622 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7692;ERATE=0.0007;THETA=0.0001;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104588684 . TA T 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0020;AVGPOST=0.9989;RSQ=0.8099;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104588790 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6859;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104588822 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8799;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104588912 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0113;AVGPOST=0.9994;RSQ=0.9799;ERATE=0.0002;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104588916 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0005;AVGPOST=0.9991;RSQ=0.3044;ERATE=0.0003;THETA=0.0029;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104589068 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9191;ERATE=0.0003;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104589096 . AT A 1229 PASS INDEL;BAVGPOST=0.757;BRSQ=0.454;LDAF=0.2649;AVGPOST=0.7638;RSQ=0.5490;ERATE=0.0410;THETA=0.0004;AC=466;AN=2184 GT:DS:GL:BD 0.21336997 0 1 104589214 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.970;LDAF=0.0277;AVGPOST=0.9969;RSQ=0.9613;ERATE=0.0005;THETA=0.0007;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 104589288 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0040;AVGPOST=0.9982;RSQ=0.8374;ERATE=0.0003;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104589309 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.490;LDAF=0.0035;AVGPOST=0.9974;RSQ=0.7083;ERATE=0.0006;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104589372 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.979;LDAF=0.0400;AVGPOST=0.9963;RSQ=0.9660;ERATE=0.0006;THETA=0.0003;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 104589503 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0336;AVGPOST=0.9949;RSQ=0.9447;ERATE=0.0002;THETA=0.0005;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 104589724 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5882;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104589785 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0030;AVGPOST=0.9986;RSQ=0.8156;ERATE=0.0005;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104589886 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7787;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104589907 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7921;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104589910 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7301;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104590100 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0120;AVGPOST=0.9975;RSQ=0.9303;ERATE=0.0002;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104590108 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0002;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104590149 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7344;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104590200 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1014;AVGPOST=0.9988;RSQ=0.9954;ERATE=0.0003;THETA=0.0003;AC=220;AN=2184 GT:DS:GL:BD 0.10073260 0 1 104590268 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0013;AVGPOST=1.0000;RSQ=0.9839;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104590321 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0053;AVGPOST=0.9976;RSQ=0.8380;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104590429 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.742;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9426;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104590502 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104590690 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7106;AVGPOST=0.9961;RSQ=0.9934;ERATE=0.0004;THETA=0.0004;AC=1552;AN=2184 GT:DS:GL:BD 0.71062273 1 1 104590862 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2303;AVGPOST=0.9988;RSQ=0.9976;ERATE=0.0003;THETA=0.0008;AC=504;AN=2184 GT:DS:GL:BD 0.23076923 0 1 104590878 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.8403;AVGPOST=0.9933;RSQ=0.9830;ERATE=0.0009;THETA=0.0010;AC=1837;AN=2184 GT:DS:GL:BD 0.84111720 1 1 104590893 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5943;AVGPOST=0.9954;RSQ=0.9929;ERATE=0.0005;THETA=0.0007;AC=1296;AN=2184 GT:DS:GL:BD 0.59340662 1 1 104591132 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7793;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104591223 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6025;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104591361 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104591386 rs72104745 GCAGTGGAATTGC G 22337 PASS INDEL;BAVGPOST=0.987;BRSQ=0.934;LDAF=0.1008;AVGPOST=0.9973;RSQ=0.9884;ERATE=0.0004;THETA=0.0002;AC=220;AN=2184 GT:DS:GL:BD 0.10073260 0 1 104591408 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9319;ERATE=0.0002;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104591528 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8143;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104591614 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0002;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104591678 . T TG 2680 PASS INDEL;BAVGPOST=0.982;BRSQ=0.884;LDAF=0.0775;AVGPOST=0.9851;RSQ=0.9184;ERATE=0.0008;THETA=0.0002;AC=161;AN=2184 GT:DS:GL:BD 0.07371795 0 1 104591785 . T TG 2067 PASS INDEL;BAVGPOST=0.922;BRSQ=0.707;LDAF=0.1452;AVGPOST=0.9340;RSQ=0.8114;ERATE=0.0010;THETA=0.0005;AC=309;AN=2184 GT:DS:GL:BD 0.14148352 0 1 104591790 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8661;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104591823 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.661;LDAF=0.0041;AVGPOST=0.9964;RSQ=0.6817;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104591827 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7873;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104591847 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8012;ERATE=0.0006;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104591890 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0665;AVGPOST=0.9988;RSQ=0.9930;ERATE=0.0003;THETA=0.0004;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 104591920 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104592097 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9049;ERATE=0.0002;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104592112 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9187;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104592326 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104592330 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0078;AVGPOST=0.9999;RSQ=0.9916;ERATE=0.0002;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104592389 . C CAGTT 4894 PASS INDEL;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0149;AVGPOST=0.9990;RSQ=0.9700;ERATE=0.0004;THETA=0.0002;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104592418 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.5860;AVGPOST=0.9904;RSQ=0.9852;ERATE=0.0019;THETA=0.0009;AC=1280;AN=2184 GT:DS:GL:BD 0.58608061 1 1 104592421 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104592553 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6746;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104592608 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0996;AVGPOST=0.9963;RSQ=0.9830;ERATE=0.0010;THETA=0.0007;AC=216;AN=2184 GT:DS:GL:BD 0.09890110 0 1 104592761 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7986;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104592855 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.910;BRSQ=0.856;LDAF=0.4659;AVGPOST=0.9274;RSQ=0.9088;ERATE=0.0004;THETA=0.0002;AC=1030;AN=2184 GT:DS:GL:BD 0.47161171 0 1 104592885 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.910;BRSQ=0.856;LDAF=0.4644;AVGPOST=0.9281;RSQ=0.9102;ERATE=0.0005;THETA=0.0004;AC=1027;AN=2184 GT:DS:GL:BD 0.47023809 0 1 104592886 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.910;BRSQ=0.856;LDAF=0.4640;AVGPOST=0.9276;RSQ=0.9088;ERATE=0.0005;THETA=0.0003;AC=1027;AN=2184 GT:DS:GL:BD 0.47023809 0 1 104592887 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.909;BRSQ=0.853;LDAF=0.4669;AVGPOST=0.9260;RSQ=0.9070;ERATE=0.0009;THETA=0.0003;AC=1033;AN=2184 GT:DS:GL:BD 0.47298536 0 1 104592889 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.944;BRSQ=0.855;LDAF=0.7854;AVGPOST=0.9170;RSQ=0.8316;ERATE=0.0117;THETA=0.0005;AC=1753;AN=2184 GT:DS:GL:BD 0.80265570 1 1 104592917 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.645;LDAF=0.0033;AVGPOST=0.9962;RSQ=0.5344;ERATE=0.0006;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104592923 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.727;LDAF=0.0029;AVGPOST=0.9975;RSQ=0.6630;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104592949 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.866;LDAF=0.0125;AVGPOST=0.9975;RSQ=0.9295;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104592978 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.8989;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104593088 rs66967561 TTTTTG T 41498 PASS INDEL;BAVGPOST=0.960;BRSQ=0.931;LDAF=0.5671;AVGPOST=0.9537;RSQ=0.9257;ERATE=0.0096;THETA=0.0006;AC=1260;AN=2184 GT:DS:GL:BD 0.57692307 1 1 104593182 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104593314 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8879;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104593342 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8446;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104593346 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.1640;AVGPOST=0.9982;RSQ=0.9957;ERATE=0.0003;THETA=0.0003;AC=359;AN=2184 GT:DS:GL:BD 0.16437729 0 1 104593451 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2303;AVGPOST=0.9979;RSQ=0.9958;ERATE=0.0003;THETA=0.0005;AC=504;AN=2184 GT:DS:GL:BD 0.23076923 0 1 104593467 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5790;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104593551 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.789;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.6613;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104593569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6492;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104593594 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5894;AVGPOST=0.9974;RSQ=0.9953;ERATE=0.0005;THETA=0.0004;AC=1286;AN=2184 GT:DS:GL:BD 0.58882785 1 1 104593595 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.783;LDAF=0.0022;AVGPOST=0.9976;RSQ=0.5660;ERATE=0.0006;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104593639 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5921;AVGPOST=0.9972;RSQ=0.9949;ERATE=0.0006;THETA=0.0004;AC=1292;AN=2184 GT:DS:GL:BD 0.59157509 1 1 104593666 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0091;AVGPOST=0.9989;RSQ=0.9404;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104593732 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.2863;AVGPOST=0.9936;RSQ=0.9897;ERATE=0.0007;THETA=0.0005;AC=622;AN=2184 GT:DS:GL:BD 0.28479853 0 1 104593751 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.5598;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104593825 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0506;AVGPOST=0.9990;RSQ=0.9923;ERATE=0.0003;THETA=0.0002;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 104593986 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104594009 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9426;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104594060 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9545;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104594204 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0497;AVGPOST=0.9990;RSQ=0.9924;ERATE=0.0003;THETA=0.0008;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 104594252 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0956;AVGPOST=0.9989;RSQ=0.9945;ERATE=0.0005;THETA=0.0005;AC=209;AN=2184 GT:DS:GL:BD 0.09569597 0 1 104594269 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0034;AVGPOST=0.9988;RSQ=0.8578;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104594302 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104594345 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.751;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8016;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104594357 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.698;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5853;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104594358 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.835;LDAF=0.0039;AVGPOST=0.9960;RSQ=0.6220;ERATE=0.0004;THETA=0.0024;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104594421 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5195;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104594430 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0040;AVGPOST=0.9991;RSQ=0.9001;ERATE=0.0005;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104594434 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.849;LDAF=0.0067;AVGPOST=0.9984;RSQ=0.9046;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104594466 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1750;AVGPOST=0.9972;RSQ=0.9933;ERATE=0.0004;THETA=0.0002;AC=383;AN=2184 GT:DS:GL:BD 0.17536630 0 1 104594509 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.7020;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104594538 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0951;AVGPOST=0.9995;RSQ=0.9975;ERATE=0.0003;THETA=0.0006;AC=208;AN=2184 GT:DS:GL:BD 0.09523810 0 1 104594559 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0953;AVGPOST=0.9984;RSQ=0.9919;ERATE=0.0004;THETA=0.0005;AC=206;AN=2184 GT:DS:GL:BD 0.09432235 0 1 104594616 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8338;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104594644 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8318;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104594701 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7605;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104594735 . AG A 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104594837 . TA T 439 PASS INDEL;BAVGPOST=0.986;BRSQ=0.690;LDAF=0.0356;AVGPOST=0.9680;RSQ=0.6207;ERATE=0.0045;THETA=0.0010;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 104595091 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0149;AVGPOST=0.9992;RSQ=0.9744;ERATE=0.0004;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104595266 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9409;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104595445 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5090;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104595612 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.571;LDAF=0.0018;AVGPOST=0.9985;RSQ=0.6945;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104595689 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6143;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104595705 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.807;LDAF=0.0499;AVGPOST=0.9892;RSQ=0.9168;ERATE=0.0004;THETA=0.0005;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 104595976 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.860;LDAF=0.0078;AVGPOST=0.9958;RSQ=0.7993;ERATE=0.0005;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104595999 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9321;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104596116 . ACATG A 196 PASS INDEL;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0038;AVGPOST=0.9964;RSQ=0.6174;ERATE=0.0006;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104596164 . C CT 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0023;AVGPOST=0.9980;RSQ=0.6275;ERATE=0.0007;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104596319 . TA T 68 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104596337 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8757;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104596424 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104596438 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6471;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104596464 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8795;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104596473 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.2844;AVGPOST=0.9959;RSQ=0.9918;ERATE=0.0004;THETA=0.0005;AC=622;AN=2184 GT:DS:GL:BD 0.28479853 0 1 104596499 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.2847;AVGPOST=0.9957;RSQ=0.9916;ERATE=0.0005;THETA=0.0007;AC=623;AN=2184 GT:DS:GL:BD 0.28525642 0 1 104596528 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104596569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9799;ERATE=0.0003;THETA=0.0023;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104596808 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0062;AVGPOST=0.9995;RSQ=0.9590;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104596913 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104596953 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.963;LDAF=0.9817;AVGPOST=0.9977;RSQ=0.9600;ERATE=0.0005;THETA=0.0005;AC=2145;AN=2184 GT:DS:GL:BD 0.98214287 1 1 104597157 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0029;AVGPOST=0.9990;RSQ=0.8827;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104597188 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104597294 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0061;AVGPOST=0.9992;RSQ=0.9482;ERATE=0.0003;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104597390 . C CA 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5677;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104597599 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0111;AVGPOST=0.9996;RSQ=0.9826;ERATE=0.0003;THETA=0.0010;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104598240 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.798;LDAF=0.0050;AVGPOST=0.9956;RSQ=0.6683;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104598312 . TACAC T 388 PASS INDEL;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0049;AVGPOST=0.9979;RSQ=0.8270;ERATE=0.0006;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104598363 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0046;AVGPOST=0.9997;RSQ=0.9669;ERATE=0.0003;THETA=0.0014;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104598419 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.903;LDAF=0.0079;AVGPOST=0.9981;RSQ=0.9126;ERATE=0.0004;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104598741 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0292;AVGPOST=0.9992;RSQ=0.9874;ERATE=0.0003;THETA=0.0011;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 104598802 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0058;AVGPOST=0.9984;RSQ=0.9204;ERATE=0.0003;THETA=0.0011;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104598837 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8476;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104598943 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5771;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104598948 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104599011 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.906;LDAF=0.0078;AVGPOST=0.9984;RSQ=0.9246;ERATE=0.0003;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104599042 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0580;AVGPOST=0.9950;RSQ=0.9650;ERATE=0.0005;THETA=0.0004;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 104599365 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6061;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104599472 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8535;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104599606 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104599635 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0276;AVGPOST=0.9990;RSQ=0.9838;ERATE=0.0003;THETA=0.0007;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 104599651 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.6388;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104599654 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.862;LDAF=0.0020;AVGPOST=0.9994;RSQ=0.8517;ERATE=0.0003;THETA=0.0019;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104599792 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4948;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104600000 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4970;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104600023 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5443;AVGPOST=0.9981;RSQ=0.9972;ERATE=0.0005;THETA=0.0002;AC=1188;AN=2184 GT:DS:GL:BD 0.54395604 1 1 104600166 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.9032;ERATE=0.0002;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104600546 . CCAGT C 1163 PASS INDEL;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0081;AVGPOST=0.9985;RSQ=0.9190;ERATE=0.0005;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104600583 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104600627 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5448;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0002;AC=1190;AN=2184 GT:DS:GL:BD 0.54487181 1 1 104600790 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0002;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104601005 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104601025 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0161;AVGPOST=0.9998;RSQ=0.9930;ERATE=0.0002;THETA=0.0002;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 104601136 . A AT 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104601277 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6416;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104601313 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104601370 rs66461949 AG A 26081 PASS INDEL;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5501;AVGPOST=0.9916;RSQ=0.9883;ERATE=0.0011;THETA=0.0003;AC=1202;AN=2184 GT:DS:GL:BD 0.55036628 1 1 104601388 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104601602 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.9089;ERATE=0.0002;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104601657 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104601668 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6745;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104601738 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6008;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104601795 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6524;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104601819 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0981;AVGPOST=0.9993;RSQ=0.9963;ERATE=0.0003;THETA=0.0002;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 104601824 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.646;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.5067;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104601889 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0042;AVGPOST=0.9977;RSQ=0.8007;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104601909 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0046;AVGPOST=0.9989;RSQ=0.8871;ERATE=0.0004;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104601917 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.985;LDAF=0.0983;AVGPOST=0.9987;RSQ=0.9934;ERATE=0.0004;THETA=0.0003;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 104601926 . A AT 743 PASS INDEL;BAVGPOST=0.991;BRSQ=0.749;LDAF=0.0302;AVGPOST=0.9731;RSQ=0.6494;ERATE=0.0054;THETA=0.0003;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 104601944 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0031;AVGPOST=0.9972;RSQ=0.6940;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104602103 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.702;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104602255 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7591;AVGPOST=0.9986;RSQ=0.9971;ERATE=0.0004;THETA=0.0002;AC=1660;AN=2184 GT:DS:GL:BD 0.76007324 1 1 104602337 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5800;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104602398 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9452;ERATE=0.0002;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104602409 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6777;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104602454 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.652;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104602480 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0082;AVGPOST=0.9972;RSQ=0.8773;ERATE=0.0003;THETA=0.0001;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104602523 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4954;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104602562 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0441;AVGPOST=0.9995;RSQ=0.9952;ERATE=0.0004;THETA=0.0002;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 104602571 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.939;LDAF=0.0054;AVGPOST=0.9971;RSQ=0.7781;ERATE=0.0005;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104602705 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0298;AVGPOST=0.9980;RSQ=0.9719;ERATE=0.0004;THETA=0.0006;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 104602711 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.631;LDAF=0.0054;AVGPOST=0.9947;RSQ=0.6278;ERATE=0.0008;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104602755 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.938;LDAF=0.5296;AVGPOST=0.9447;RSQ=0.9178;ERATE=0.0126;THETA=0.0001;AC=1180;AN=2184 GT:DS:GL:BD 0.54029304 1 1 104602762 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104603104 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5640;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104603203 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5928;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104603213 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0033;AVGPOST=0.9995;RSQ=0.9393;ERATE=0.0002;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104603291 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=0.9987;RSQ=0.8409;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104603311 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0002;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104603370 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5448;AVGPOST=0.9991;RSQ=0.9985;ERATE=0.0004;THETA=0.0002;AC=1190;AN=2184 GT:DS:GL:BD 0.54487181 1 1 104603376 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0028;AVGPOST=0.9997;RSQ=0.9464;ERATE=0.0002;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104603410 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2075;AVGPOST=0.9996;RSQ=0.9991;ERATE=0.0002;THETA=0.0003;AC=454;AN=2184 GT:DS:GL:BD 0.20787546 0 1 104603452 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104603506 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0025;AVGPOST=0.9994;RSQ=0.9235;ERATE=0.0002;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104603554 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5448;AVGPOST=0.9993;RSQ=0.9988;ERATE=0.0004;THETA=0.0002;AC=1190;AN=2184 GT:DS:GL:BD 0.54487181 1 1 104603613 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7478;ERATE=0.0003;THETA=0.0001;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104603635 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0932;AVGPOST=0.9995;RSQ=0.9974;ERATE=0.0002;THETA=0.0002;AC=203;AN=2184 GT:DS:GL:BD 0.09294872 0 1 104603665 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5888;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104603671 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9346;ERATE=0.0002;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104603708 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5450;AVGPOST=0.9991;RSQ=0.9984;ERATE=0.0005;THETA=0.0002;AC=1190;AN=2184 GT:DS:GL:BD 0.54487181 1 1 104603781 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0052;AVGPOST=0.9995;RSQ=0.9539;ERATE=0.0002;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104603945 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5455;AVGPOST=0.9982;RSQ=0.9978;ERATE=0.0003;THETA=0.0002;AC=1191;AN=2184 GT:DS:GL:BD 0.54532969 1 1 104603961 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=0.9998;RSQ=0.9882;ERATE=0.0002;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104603986 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.9039;ERATE=0.0002;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104604060 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104604063 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8696;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104604103 . GGGTTC G 2578 PASS INDEL;BAVGPOST=0.996;BRSQ=0.885;LDAF=0.0179;AVGPOST=0.9959;RSQ=0.9150;ERATE=0.0005;THETA=0.0001;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 104604161 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5642;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104604225 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5670;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104604244 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104604341 . CGTA C 20 PASS INDEL;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5233;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104604430 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0046;AVGPOST=0.9968;RSQ=0.7403;ERATE=0.0005;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104604540 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104604555 . CAG C 155 PASS INDEL;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8196;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104604592 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104604643 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0048;AVGPOST=0.9978;RSQ=0.8204;ERATE=0.0002;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104604718 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8555;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104604739 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=1.0000;RSQ=0.9970;ERATE=0.0002;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104604817 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104604850 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9667;ERATE=0.0002;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104604853 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0452;AVGPOST=0.9968;RSQ=0.9742;ERATE=0.0005;THETA=0.0002;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 104604902 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5558;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104604959 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1430;AVGPOST=0.9994;RSQ=0.9975;ERATE=0.0003;THETA=0.0001;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 104605011 . C CA 8989 PASS INDEL;BAVGPOST=0.998;BRSQ=0.976;LDAF=0.0536;AVGPOST=0.9989;RSQ=0.9904;ERATE=0.0003;THETA=0.0003;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 104605022 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.5940;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104605098 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4706;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104605133 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104605159 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3097;AVGPOST=0.9975;RSQ=0.9957;ERATE=0.0006;THETA=0.0002;AC=677;AN=2184 GT:DS:GL:BD 0.30998167 0 1 104605160 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.939;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7514;ERATE=0.0004;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104605228 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.583;LDAF=0.0050;AVGPOST=0.9952;RSQ=0.6068;ERATE=0.0006;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104605243 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6524;ERATE=0.0004;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104605332 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5134;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104605378 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0038;AVGPOST=0.9992;RSQ=0.9034;ERATE=0.0004;THETA=0.0012;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104605409 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0043;AVGPOST=0.9982;RSQ=0.8168;ERATE=0.0005;THETA=0.0013;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104605420 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5164;ERATE=0.0004;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104605466 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.0991;AVGPOST=0.9977;RSQ=0.9903;ERATE=0.0005;THETA=0.0017;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 104605554 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7083;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104605606 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0391;AVGPOST=0.9995;RSQ=0.9946;ERATE=0.0004;THETA=0.0011;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 104605638 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9383;ERATE=0.0003;THETA=0.0012;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104605654 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0535;AVGPOST=0.9996;RSQ=0.9969;ERATE=0.0003;THETA=0.0018;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 104605660 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8333;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104605707 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0061;AVGPOST=0.9998;RSQ=0.9819;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104605802 . TC T 78 PASS INDEL;BAVGPOST=0.999;BRSQ=0.767;LDAF=0.0036;AVGPOST=0.9973;RSQ=0.6908;ERATE=0.0008;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104605825 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.799;LDAF=0.0018;AVGPOST=0.9996;RSQ=0.9122;ERATE=0.0003;THETA=0.0023;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104605900 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.522;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.5518;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104605945 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0063;AVGPOST=0.9978;RSQ=0.8732;ERATE=0.0005;THETA=0.0016;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104606004 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.692;LDAF=0.0029;AVGPOST=0.9973;RSQ=0.6208;ERATE=0.0006;THETA=0.0024;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104606017 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104606024 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.876;LDAF=0.0097;AVGPOST=0.9974;RSQ=0.9064;ERATE=0.0004;THETA=0.0025;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104606046 rs67856082 CT C 7982 PASS INDEL;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0410;AVGPOST=0.9991;RSQ=0.9922;ERATE=0.0003;THETA=0.0007;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 104606107 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104606201 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8116;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104606258 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0046;AVGPOST=0.9993;RSQ=0.9316;ERATE=0.0003;THETA=0.0016;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104606310 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5777;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104606315 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0983;AVGPOST=0.9991;RSQ=0.9959;ERATE=0.0004;THETA=0.0008;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 104606355 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0545;AVGPOST=0.9985;RSQ=0.9904;ERATE=0.0003;THETA=0.0009;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 104606376 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0536;AVGPOST=0.9995;RSQ=0.9962;ERATE=0.0003;THETA=0.0011;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 104606439 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0538;AVGPOST=0.9992;RSQ=0.9932;ERATE=0.0003;THETA=0.0013;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 104606456 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0541;AVGPOST=0.9985;RSQ=0.9909;ERATE=0.0003;THETA=0.0014;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 104606460 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5392;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104606463 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0463;AVGPOST=0.9970;RSQ=0.9759;ERATE=0.0004;THETA=0.0009;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 104606475 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.642;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.6741;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104606555 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0039;AVGPOST=0.9985;RSQ=0.8327;ERATE=0.0004;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104606634 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4801;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104606645 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0387;AVGPOST=0.9994;RSQ=0.9941;ERATE=0.0003;THETA=0.0008;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 104606683 . C CT 44 PASS INDEL;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6008;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104606753 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.927;LDAF=0.0379;AVGPOST=0.9926;RSQ=0.9258;ERATE=0.0007;THETA=0.0009;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 104606896 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104606979 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.7063;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104607085 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0537;AVGPOST=0.9996;RSQ=0.9969;ERATE=0.0003;THETA=0.0010;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 104607223 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0539;AVGPOST=0.9992;RSQ=0.9935;ERATE=0.0004;THETA=0.0013;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 104607249 . AT A 60 PASS INDEL;BAVGPOST=0.981;BRSQ=0.829;LDAF=0.0393;AVGPOST=0.9920;RSQ=0.9257;ERATE=0.0004;THETA=0.0006;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 104607382 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5434;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104607448 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0021;AVGPOST=0.9988;RSQ=0.7850;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104607590 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104607643 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9421;ERATE=0.0003;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104607739 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0238;AVGPOST=0.9992;RSQ=0.9855;ERATE=0.0003;THETA=0.0011;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 104607825 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7339;ERATE=0.0004;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104607843 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0066;AVGPOST=0.9981;RSQ=0.8971;ERATE=0.0004;THETA=0.0011;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104607975 . TA T 216 PASS INDEL;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7553;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104608012 . T TGAA 5600 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0538;AVGPOST=0.9991;RSQ=0.9928;ERATE=0.0005;THETA=0.0013;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 104608042 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7497;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104608155 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4668;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104608232 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7701;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104608331 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0003;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104608349 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0034;AVGPOST=0.9997;RSQ=0.9565;ERATE=0.0003;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104608390 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0388;AVGPOST=0.9993;RSQ=0.9926;ERATE=0.0004;THETA=0.0013;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 104608412 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0329;AVGPOST=0.9990;RSQ=0.9891;ERATE=0.0003;THETA=0.0034;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 104608453 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.0992;AVGPOST=0.9993;RSQ=0.9971;ERATE=0.0003;THETA=0.0012;AC=217;AN=2184 GT:DS:GL:BD 0.09935898 0 1 104608461 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6602;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104608469 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0070;AVGPOST=0.9965;RSQ=0.8192;ERATE=0.0007;THETA=0.0015;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104608587 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6244;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104608600 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9302;ERATE=0.0003;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104608602 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0390;AVGPOST=0.9997;RSQ=0.9965;ERATE=0.0003;THETA=0.0006;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 104608608 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0992;AVGPOST=0.9993;RSQ=0.9969;ERATE=0.0004;THETA=0.0008;AC=217;AN=2184 GT:DS:GL:BD 0.09935898 0 1 104608627 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0535;AVGPOST=0.9993;RSQ=0.9947;ERATE=0.0003;THETA=0.0010;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 104608665 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8316;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104608748 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5400;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104608832 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0035;AVGPOST=0.9988;RSQ=0.8379;ERATE=0.0005;THETA=0.0013;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104608913 . AG A 345 PASS INDEL;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9373;ERATE=0.0003;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104609028 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5667;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104609106 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.905;LDAF=0.0136;AVGPOST=0.9989;RSQ=0.9652;ERATE=0.0005;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104609164 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104609265 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8084;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104609299 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0389;AVGPOST=0.9995;RSQ=0.9951;ERATE=0.0003;THETA=0.0010;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 104609360 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5938;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104609420 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0020;AVGPOST=0.9992;RSQ=0.8191;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104609485 . GCA G 161 PASS INDEL;BAVGPOST=0.987;BRSQ=0.682;LDAF=0.0293;AVGPOST=0.9690;RSQ=0.5548;ERATE=0.0122;THETA=0.0011;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 104609640 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.893;LDAF=0.0107;AVGPOST=0.9983;RSQ=0.9312;ERATE=0.0003;THETA=0.0014;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104609670 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0045;AVGPOST=0.9988;RSQ=0.8773;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104609708 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104609823 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104609831 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0457;AVGPOST=0.9998;RSQ=0.9982;ERATE=0.0003;THETA=0.0014;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 104609840 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.743;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4787;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104609978 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1378;AVGPOST=0.9889;RSQ=0.9620;ERATE=0.0004;THETA=0.0012;AC=303;AN=2184 GT:DS:GL:BD 0.13873626 0 1 104609994 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0534;AVGPOST=0.9995;RSQ=0.9963;ERATE=0.0003;THETA=0.0009;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 104610021 . CCTCT C 46 PASS INDEL;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4707;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104610062 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.873;LDAF=0.0141;AVGPOST=0.9986;RSQ=0.9571;ERATE=0.0003;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104610074 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6470;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104610078 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.919;LDAF=0.0169;AVGPOST=0.9976;RSQ=0.9435;ERATE=0.0005;THETA=0.0002;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104610079 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.6396;AVGPOST=0.9957;RSQ=0.9924;ERATE=0.0018;THETA=0.0004;AC=1396;AN=2184 GT:DS:GL:BD 0.63919413 1 1 104610124 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104610206 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0212;AVGPOST=0.9996;RSQ=0.9924;ERATE=0.0003;THETA=0.0006;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 104610356 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8667;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104610407 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7633;AVGPOST=0.9990;RSQ=0.9974;ERATE=0.0004;THETA=0.0002;AC=1667;AN=2184 GT:DS:GL:BD 0.76327837 1 1 104610418 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104610461 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.0732;AVGPOST=0.9976;RSQ=0.9900;ERATE=0.0004;THETA=0.0008;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 104610661 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9151;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104610722 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104610747 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9895;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104610761 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8255;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104610773 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8156;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104610774 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9481;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104610782 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8476;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104610802 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0025;AVGPOST=0.9967;RSQ=0.5358;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104610946 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0116;AVGPOST=0.9993;RSQ=0.9754;ERATE=0.0003;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104611112 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0117;AVGPOST=0.9992;RSQ=0.9718;ERATE=0.0003;THETA=0.0011;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104611131 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.6114;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104611152 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0029;AVGPOST=0.9986;RSQ=0.8177;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104611196 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0204;AVGPOST=0.9992;RSQ=0.9848;ERATE=0.0004;THETA=0.0006;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 104611215 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0027;AVGPOST=0.9982;RSQ=0.7358;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104611258 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0064;AVGPOST=0.9977;RSQ=0.8585;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104611277 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9357;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104611339 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6541;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104611367 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7860;ERATE=0.0004;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104611378 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104611387 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0018;AVGPOST=0.9997;RSQ=0.9305;ERATE=0.0003;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104611406 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7648;AVGPOST=0.9974;RSQ=0.9937;ERATE=0.0004;THETA=0.0020;AC=1670;AN=2184 GT:DS:GL:BD 0.76465201 1 1 104611489 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.7656;AVGPOST=0.9947;RSQ=0.9885;ERATE=0.0009;THETA=0.0006;AC=1671;AN=2184 GT:DS:GL:BD 0.76510990 1 1 104611534 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0048;AVGPOST=0.9985;RSQ=0.8859;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104611568 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104611579 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104611649 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.958;LDAF=0.0157;AVGPOST=0.9973;RSQ=0.9317;ERATE=0.0007;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 104611657 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.7993;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104611715 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5735;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104611763 . A AT 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5313;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104611785 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5655;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104611800 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0032;AVGPOST=0.9987;RSQ=0.8248;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104611803 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6037;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104611992 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0217;AVGPOST=0.9984;RSQ=0.9698;ERATE=0.0003;THETA=0.0009;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 104612119 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5351;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104612129 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0006;AVGPOST=0.9991;RSQ=0.3778;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104612198 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.644;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7297;ERATE=0.0005;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104612249 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.768;LDAF=0.0084;AVGPOST=0.9944;RSQ=0.7562;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104612291 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.590;LDAF=0.0036;AVGPOST=0.9981;RSQ=0.7843;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104612329 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0071;AVGPOST=0.9992;RSQ=0.9551;ERATE=0.0003;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104612371 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0121;AVGPOST=0.9993;RSQ=0.9736;ERATE=0.0003;THETA=0.0029;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104612427 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0043;AVGPOST=0.9991;RSQ=0.9156;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104612463 . TA T 128 PASS INDEL;BAVGPOST=0.998;BRSQ=0.762;LDAF=0.0032;AVGPOST=0.9989;RSQ=0.8447;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104612658 . GCCATTA G 339 PASS INDEL;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4783;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104612754 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104612850 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0942;AVGPOST=0.9988;RSQ=0.9955;ERATE=0.0003;THETA=0.0004;AC=206;AN=2184 GT:DS:GL:BD 0.09432235 0 1 104612879 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0078;AVGPOST=0.9995;RSQ=0.9704;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104612998 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.958;LDAF=0.0133;AVGPOST=0.9994;RSQ=0.9787;ERATE=0.0003;THETA=0.0007;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104613110 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0022;AVGPOST=0.9979;RSQ=0.6401;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104613222 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104613252 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0005;AVGPOST=0.9990;RSQ=0.1968;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104613376 . CCTGT C 72 PASS INDEL;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0021;AVGPOST=0.9976;RSQ=0.5092;ERATE=0.0008;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104613385 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0120;AVGPOST=0.9998;RSQ=0.9926;ERATE=0.0003;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104613428 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8667;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104613474 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0021;AVGPOST=0.9987;RSQ=0.7335;ERATE=0.0006;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104613481 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0076;AVGPOST=0.9995;RSQ=0.9670;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104613561 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104613612 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7764;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104613697 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.7698;AVGPOST=0.9923;RSQ=0.9819;ERATE=0.0007;THETA=0.0003;AC=1684;AN=2184 GT:DS:GL:BD 0.77106225 1 1 104613705 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0045;AVGPOST=0.9966;RSQ=0.7483;ERATE=0.0004;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104613812 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7497;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104613842 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0215;AVGPOST=0.9978;RSQ=0.9607;ERATE=0.0003;THETA=0.0028;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 104614092 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0051;AVGPOST=0.9996;RSQ=0.9662;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104614200 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1014;AVGPOST=0.9986;RSQ=0.9953;ERATE=0.0003;THETA=0.0012;AC=222;AN=2184 GT:DS:GL:BD 0.10164835 0 1 104614280 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7296;ERATE=0.0003;THETA=0.0107;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104614305 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=1.0000;RSQ=0.9960;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104614405 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9558;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104614456 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0049;AVGPOST=0.9996;RSQ=0.9647;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104614471 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104614498 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7332;ERATE=0.0007;THETA=0.0025;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104614503 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6829;ERATE=0.0003;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104614530 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.795;LDAF=0.0089;AVGPOST=0.9951;RSQ=0.8068;ERATE=0.0005;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104614541 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104614577 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6243;ERATE=0.0004;THETA=0.0090;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104614631 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.923;LDAF=0.0222;AVGPOST=0.9937;RSQ=0.8984;ERATE=0.0005;THETA=0.0068;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 104614644 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104614646 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6736;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104614680 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0054;AVGPOST=0.9991;RSQ=0.9298;ERATE=0.0003;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104614712 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7702;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104614715 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6616;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104614817 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104614838 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104614849 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6309;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104614937 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9598;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104615055 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104615077 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104615198 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104615219 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104615368 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1196;AVGPOST=0.9977;RSQ=0.9927;ERATE=0.0005;THETA=0.0008;AC=260;AN=2184 GT:DS:GL:BD 0.11904762 0 1 104615403 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8313;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104615464 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.733;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104615771 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8857;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104615773 . CCTGA C 1077 PASS INDEL;BAVGPOST=0.998;BRSQ=0.864;LDAF=0.0077;AVGPOST=0.9964;RSQ=0.8287;ERATE=0.0004;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104615781 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.6983;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104615903 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5959;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104616081 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.5520;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104616085 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.988;LDAF=0.5842;AVGPOST=0.9879;RSQ=0.9798;ERATE=0.0008;THETA=0.0005;AC=1278;AN=2184 GT:DS:GL:BD 0.58516484 1 1 104616233 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1312;AVGPOST=0.9983;RSQ=0.9952;ERATE=0.0004;THETA=0.0004;AC=286;AN=2184 GT:DS:GL:BD 0.13095239 0 1 104616392 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0049;AVGPOST=0.9985;RSQ=0.8631;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104616420 . T TG 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5922;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104616452 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0180;AVGPOST=0.9976;RSQ=0.9449;ERATE=0.0004;THETA=0.0009;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104616537 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6228;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104616738 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4938;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104616785 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0018;AVGPOST=0.9976;RSQ=0.4911;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104616884 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.880;LDAF=0.1235;AVGPOST=0.9883;RSQ=0.9639;ERATE=0.0006;THETA=0.0010;AC=275;AN=2184 GT:DS:GL:BD 0.12591575 0 1 104617015 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.608;LDAF=0.0029;AVGPOST=0.9959;RSQ=0.4365;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104617079 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.660;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.5449;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104617196 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0046;AVGPOST=0.9982;RSQ=0.8274;ERATE=0.0005;THETA=0.0012;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104617266 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0019;AVGPOST=0.9972;RSQ=0.4492;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104617308 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1277;AVGPOST=0.9992;RSQ=0.9975;ERATE=0.0003;THETA=0.0003;AC=279;AN=2184 GT:DS:GL:BD 0.12774725 0 1 104617592 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6525;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104617631 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4839;ERATE=0.0004;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104617647 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1237;AVGPOST=0.9989;RSQ=0.9963;ERATE=0.0003;THETA=0.0010;AC=270;AN=2184 GT:DS:GL:BD 0.12362637 0 1 104617704 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7341;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104617711 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.5029;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104617783 . T TAC 40 PASS INDEL;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104617862 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7100;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104617893 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104617969 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7493;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104617988 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104618081 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1040;AVGPOST=0.9990;RSQ=0.9963;ERATE=0.0004;THETA=0.0011;AC=228;AN=2184 GT:DS:GL:BD 0.10439561 0 1 104618280 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104618313 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6496;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104618367 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5841;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104618399 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7013;ERATE=0.0003;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104618474 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.740;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4353;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104618524 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.979;LDAF=0.0388;AVGPOST=0.9927;RSQ=0.9268;ERATE=0.0005;THETA=0.0007;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 104618537 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8687;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104618558 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0028;AVGPOST=0.9979;RSQ=0.6791;ERATE=0.0006;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104618563 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.793;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.7259;ERATE=0.0009;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104618586 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0007;AVGPOST=0.9992;RSQ=0.5712;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104618589 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.880;LDAF=0.0069;AVGPOST=0.9974;RSQ=0.8496;ERATE=0.0004;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104618601 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0043;AVGPOST=0.9987;RSQ=0.9045;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104618914 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1040;AVGPOST=0.9992;RSQ=0.9970;ERATE=0.0004;THETA=0.0014;AC=228;AN=2184 GT:DS:GL:BD 0.10439561 0 1 104619108 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.1040;AVGPOST=0.9993;RSQ=0.9974;ERATE=0.0003;THETA=0.0004;AC=228;AN=2184 GT:DS:GL:BD 0.10439561 0 1 104619148 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1040;AVGPOST=0.9989;RSQ=0.9961;ERATE=0.0004;THETA=0.0023;AC=228;AN=2184 GT:DS:GL:BD 0.10439561 0 1 104619196 . CCA C 62 PASS INDEL;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7194;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104619202 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.924;LDAF=0.0179;AVGPOST=0.9951;RSQ=0.8858;ERATE=0.0004;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 104619416 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0043;AVGPOST=0.9994;RSQ=0.9357;ERATE=0.0003;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104619531 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5946;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104619567 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.711;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5379;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104619737 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0065;AVGPOST=0.9996;RSQ=0.9731;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104619807 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.524;LDAF=0.0153;AVGPOST=0.9793;RSQ=0.4935;ERATE=0.0041;THETA=0.0011;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104619984 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0038;AVGPOST=0.9967;RSQ=0.6215;ERATE=0.0011;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104620130 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2399;AVGPOST=0.9984;RSQ=0.9960;ERATE=0.0006;THETA=0.0002;AC=521;AN=2184 GT:DS:GL:BD 0.23855311 0 1 104620243 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2288;AVGPOST=0.9988;RSQ=0.9973;ERATE=0.0003;THETA=0.0005;AC=498;AN=2184 GT:DS:GL:BD 0.22802198 0 1 104620377 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0027;AVGPOST=0.9995;RSQ=0.9156;ERATE=0.0003;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104620492 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0043;AVGPOST=0.9988;RSQ=0.8878;ERATE=0.0004;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104620625 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9154;ERATE=0.0003;THETA=0.0024;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104620646 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.952;LDAF=0.0246;AVGPOST=0.9962;RSQ=0.9377;ERATE=0.0004;THETA=0.0003;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 104620908 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0045;AVGPOST=0.9996;RSQ=0.9664;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104620970 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9362;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104620979 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.6522;ERATE=0.0003;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104621109 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2420;AVGPOST=0.9968;RSQ=0.9931;ERATE=0.0004;THETA=0.0027;AC=527;AN=2184 GT:DS:GL:BD 0.24130036 0 1 104621110 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.889;LDAF=0.0074;AVGPOST=0.9968;RSQ=0.8327;ERATE=0.0003;THETA=0.0032;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104621230 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0035;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104621246 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7117;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104621276 . CA C 470 PASS INDEL;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0058;AVGPOST=0.9977;RSQ=0.8554;ERATE=0.0005;THETA=0.0084;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104621353 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0103;AVGPOST=0.9995;RSQ=0.9784;ERATE=0.0003;THETA=0.0022;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104621357 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.979;LDAF=0.2425;AVGPOST=0.9884;RSQ=0.9778;ERATE=0.0014;THETA=0.0385;AC=527;AN=2184 GT:DS:GL:BD 0.24130036 0 1 104621387 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7320;ERATE=0.0003;THETA=0.0069;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104621575 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0133;AVGPOST=0.9985;RSQ=0.9580;ERATE=0.0003;THETA=0.0178;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104621665 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.950;LDAF=0.2407;AVGPOST=0.9775;RSQ=0.9582;ERATE=0.0007;THETA=0.0032;AC=519;AN=2184 GT:DS:GL:BD 0.23763736 0 1 104622048 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0044;AVGPOST=0.9995;RSQ=0.9511;ERATE=0.0003;THETA=0.0075;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104622068 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7494;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104622101 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0066;AVGPOST=0.9992;RSQ=0.9479;ERATE=0.0003;THETA=0.0051;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104622104 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0015;AVGPOST=0.9991;RSQ=0.7986;ERATE=0.0003;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104622122 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0075;AVGPOST=0.9990;RSQ=0.9489;ERATE=0.0004;THETA=0.0102;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104622136 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0150;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104622196 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.961;LDAF=0.9299;AVGPOST=0.9943;RSQ=0.9657;ERATE=0.0003;THETA=0.0064;AC=2033;AN=2184 GT:DS:GL:BD 0.93086082 1 1 104622285 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1460;AVGPOST=0.9966;RSQ=0.9892;ERATE=0.0004;THETA=0.0102;AC=316;AN=2184 GT:DS:GL:BD 0.14468865 0 1 104622346 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104622534 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.963;LDAF=0.1863;AVGPOST=0.9812;RSQ=0.9585;ERATE=0.0004;THETA=0.0007;AC=401;AN=2184 GT:DS:GL:BD 0.18360806 0 1 104622556 rs72012204 GA G 12073 PASS INDEL;BAVGPOST=0.993;BRSQ=0.976;LDAF=0.1636;AVGPOST=0.9948;RSQ=0.9845;ERATE=0.0007;THETA=0.0023;AC=357;AN=2184 GT:DS:GL:BD 0.16346154 0 1 104622582 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0065;AVGPOST=0.9998;RSQ=0.9864;ERATE=0.0003;THETA=0.0013;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104622630 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5041;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104622723 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0087;AVGPOST=0.9989;RSQ=0.9553;ERATE=0.0003;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104622768 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104622782 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9603;ERATE=0.0003;THETA=0.0018;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104622791 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6626;ERATE=0.0004;THETA=0.0026;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104623034 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9442;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104623063 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.983;LDAF=0.1410;AVGPOST=0.9956;RSQ=0.9866;ERATE=0.0005;THETA=0.0003;AC=306;AN=2184 GT:DS:GL:BD 0.14010990 0 1 104623162 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.641;LDAF=0.0039;AVGPOST=0.9941;RSQ=0.4054;ERATE=0.0011;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104623251 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0065;AVGPOST=0.9995;RSQ=0.9654;ERATE=0.0004;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104623463 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5818;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104623531 . AAAC A 963 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0041;AVGPOST=0.9998;RSQ=0.9741;ERATE=0.0003;THETA=0.0015;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104623551 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0063;AVGPOST=0.9994;RSQ=0.9610;ERATE=0.0003;THETA=0.0012;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104623571 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0127;AVGPOST=0.9970;RSQ=0.9212;ERATE=0.0003;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104623658 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104623730 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9473;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104623745 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5443;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104623779 . TC T 5143 PASS INDEL;BAVGPOST=0.990;BRSQ=0.959;LDAF=0.1180;AVGPOST=0.9912;RSQ=0.9678;ERATE=0.0006;THETA=0.0003;AC=258;AN=2184 GT:DS:GL:BD 0.11813187 0 1 104623855 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7152;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104623906 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.2192;AVGPOST=0.9971;RSQ=0.9941;ERATE=0.0004;THETA=0.0006;AC=478;AN=2184 GT:DS:GL:BD 0.21886447 0 1 104623910 . CATAATAGAG C 1380 PASS INDEL;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0097;AVGPOST=0.9959;RSQ=0.8408;ERATE=0.0004;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104624080 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.686;LDAF=0.0019;AVGPOST=0.9982;RSQ=0.6364;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104624099 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.4423;AVGPOST=0.9941;RSQ=0.9918;ERATE=0.0012;THETA=0.0005;AC=966;AN=2184 GT:DS:GL:BD 0.44230768 0 1 104624200 rs112181419 C CA 19452 PASS INDEL;BAVGPOST=0.991;BRSQ=0.983;LDAF=0.2415;AVGPOST=0.9874;RSQ=0.9752;ERATE=0.0025;THETA=0.0007;AC=524;AN=2184 GT:DS:GL:BD 0.23992674 0 1 104624506 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0266;AVGPOST=0.9985;RSQ=0.9807;ERATE=0.0003;THETA=0.0002;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 104624518 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.984;LDAF=0.8763;AVGPOST=0.9881;RSQ=0.9582;ERATE=0.0012;THETA=0.0004;AC=1915;AN=2184 GT:DS:GL:BD 0.87683153 1 1 104624523 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0019;AVGPOST=0.9973;RSQ=0.5447;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104624639 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=0.9987;RSQ=0.3789;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104624653 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0178;AVGPOST=0.9999;RSQ=0.9964;ERATE=0.0003;THETA=0.0002;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 104624814 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104624836 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9144;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104625016 . TG T 44 PASS INDEL;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5655;ERATE=0.0004;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104625029 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0040;AVGPOST=0.9995;RSQ=0.9507;ERATE=0.0003;THETA=0.0012;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104625076 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0095;AVGPOST=0.9987;RSQ=0.9481;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104625079 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5634;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104625190 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9421;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104625229 . A AT 970 PASS INDEL;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0084;AVGPOST=0.9968;RSQ=0.8582;ERATE=0.0005;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104625241 . C CT 356 PASS INDEL;BAVGPOST=0.939;BRSQ=0.394;LDAF=0.1258;AVGPOST=0.8327;RSQ=0.3972;ERATE=0.0114;THETA=0.0003;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 104627137 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.1091;AVGPOST=0.9920;RSQ=0.9734;ERATE=0.0007;THETA=0.0053;AC=237;AN=2184 GT:DS:GL:BD 0.10851648 0 1 104627181 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.974;LDAF=0.5103;AVGPOST=0.9886;RSQ=0.9832;ERATE=0.0005;THETA=0.0002;AC=1114;AN=2184 GT:DS:GL:BD 0.51007324 1 1 104627259 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0038;AVGPOST=0.9995;RSQ=0.9423;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104627275 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0025;AVGPOST=0.9991;RSQ=0.8402;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104627446 . C CG 13521 PASS INDEL;BAVGPOST=0.979;BRSQ=0.962;LDAF=0.5021;AVGPOST=0.9456;RSQ=0.9181;ERATE=0.0058;THETA=0.0002;AC=1098;AN=2184 GT:DS:GL:BD 0.50274724 1 1 104628242 . A AATCTC 696 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0040;AVGPOST=0.9992;RSQ=0.9092;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104628336 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0653;AVGPOST=0.9962;RSQ=0.9737;ERATE=0.0008;THETA=0.0075;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 104628418 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.820;BRSQ=0.727;LDAF=0.3876;AVGPOST=0.8252;RSQ=0.7610;ERATE=0.0134;THETA=0.0006;AC=849;AN=2184 GT:DS:GL:BD 0.38873628 0 1 104628475 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8021;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104628576 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.903;LDAF=0.0082;AVGPOST=0.9982;RSQ=0.9050;ERATE=0.0006;THETA=0.0014;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104628599 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.911;BRSQ=0.828;LDAF=0.4806;AVGPOST=0.8699;RSQ=0.7766;ERATE=0.0917;THETA=0.0007;AC=1078;AN=2184 GT:DS:GL:BD 0.49358973 0 1 104629160 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.564;LDAF=0.0022;AVGPOST=0.9963;RSQ=0.2517;ERATE=0.0006;THETA=0.0041;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104631045 . AT A 648 PASS INDEL;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0063;AVGPOST=0.9966;RSQ=0.7694;ERATE=0.0005;THETA=0.0038;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104631411 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.880;BRSQ=0.811;LDAF=0.3948;AVGPOST=0.8550;RSQ=0.7998;ERATE=0.0170;THETA=0.0013;AC=884;AN=2184 GT:DS:GL:BD 0.40476191 0 1 104631474 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.832;BRSQ=0.738;LDAF=0.2966;AVGPOST=0.8621;RSQ=0.7850;ERATE=0.0012;THETA=0.0014;AC=635;AN=2184 GT:DS:GL:BD 0.29075092 0 1 104631488 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.751;LDAF=0.0511;AVGPOST=0.9657;RSQ=0.7130;ERATE=0.0053;THETA=0.0005;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 104631566 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.826;BRSQ=0.665;LDAF=0.1598;AVGPOST=0.9100;RSQ=0.7507;ERATE=0.0014;THETA=0.0005;AC=289;AN=2184 GT:DS:GL:BD 0.13232601 0 1 104631673 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.971;LDAF=0.0210;AVGPOST=0.9943;RSQ=0.8956;ERATE=0.0005;THETA=0.0018;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 104631868 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.807;BRSQ=0.658;LDAF=0.2515;AVGPOST=0.8404;RSQ=0.7089;ERATE=0.0130;THETA=0.0020;AC=506;AN=2184 GT:DS:GL:BD 0.23168498 0 1 104632100 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.745;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6648;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104632124 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.953;LDAF=0.4136;AVGPOST=0.9827;RSQ=0.9759;ERATE=0.0003;THETA=0.0062;AC=907;AN=2184 GT:DS:GL:BD 0.41529304 0 1 104632157 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.788;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9133;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104632252 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0057;AVGPOST=0.9993;RSQ=0.9433;ERATE=0.0004;THETA=0.0036;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104632257 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0058;AVGPOST=0.9984;RSQ=0.8913;ERATE=0.0004;THETA=0.0064;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104632269 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9979;RSQ=0.7659;ERATE=0.0005;THETA=0.0062;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104632271 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.925;LDAF=0.3616;AVGPOST=0.9392;RSQ=0.9044;ERATE=0.0139;THETA=0.0004;AC=803;AN=2184 GT:DS:GL:BD 0.36767399 0 1 104632283 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5809;ERATE=0.0004;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104632360 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7393;ERATE=0.0003;THETA=0.0048;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104632387 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6900;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104632394 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104632421 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0502;AVGPOST=0.9989;RSQ=0.9916;ERATE=0.0003;THETA=0.0040;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 104632622 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4321;ERATE=0.0004;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104632626 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0114;AVGPOST=0.9992;RSQ=0.9714;ERATE=0.0003;THETA=0.0030;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104632652 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5776;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104633061 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.986;LDAF=0.4872;AVGPOST=0.9921;RSQ=0.9889;ERATE=0.0009;THETA=0.0006;AC=1067;AN=2184 GT:DS:GL:BD 0.48855311 0 1 104633064 . ATTGAG A 121 PASS INDEL;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6475;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104633138 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5095;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104633191 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8344;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104633272 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0007;AVGPOST=0.9991;RSQ=0.4905;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104633282 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0038;AVGPOST=0.9988;RSQ=0.8736;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104633493 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9618;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104633508 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=1.0000;RSQ=0.9960;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104633534 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9434;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104633565 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.709;LDAF=0.0027;AVGPOST=0.9973;RSQ=0.6325;ERATE=0.0003;THETA=0.0034;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104633595 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4962;AVGPOST=0.9973;RSQ=0.9962;ERATE=0.0004;THETA=0.0005;AC=1085;AN=2184 GT:DS:GL:BD 0.49679488 0 1 104633654 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.910;LDAF=0.0508;AVGPOST=0.9894;RSQ=0.9194;ERATE=0.0005;THETA=0.0009;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 104633723 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.0466;AVGPOST=0.9992;RSQ=0.9927;ERATE=0.0004;THETA=0.0003;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 104633729 . C CT 25 PASS INDEL;BAVGPOST=0.992;BRSQ=0.527;LDAF=0.0205;AVGPOST=0.9749;RSQ=0.5174;ERATE=0.0048;THETA=0.0007;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 104633938 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0024;AVGPOST=0.9987;RSQ=0.7920;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104633951 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0024;AVGPOST=0.9971;RSQ=0.5666;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104634001 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0115;AVGPOST=0.9998;RSQ=0.9905;ERATE=0.0003;THETA=0.0011;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104634157 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9481;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104634243 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4756;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104634304 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9997;RSQ=0.9764;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104634305 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.597;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7063;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104634422 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=0.9997;RSQ=0.9823;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104634430 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9133;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104634491 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.876;LDAF=0.0084;AVGPOST=0.9976;RSQ=0.9003;ERATE=0.0003;THETA=0.0008;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104634495 . T TA 83 PASS INDEL;BAVGPOST=0.999;BRSQ=0.666;LDAF=0.0039;AVGPOST=0.9941;RSQ=0.4433;ERATE=0.0010;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104634545 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.4896;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104634810 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2113;AVGPOST=0.9964;RSQ=0.9912;ERATE=0.0006;THETA=0.0006;AC=461;AN=2184 GT:DS:GL:BD 0.21108058 0 1 104634818 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6945;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104634848 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7702;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104634858 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9843;ERATE=0.0003;THETA=0.0027;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104634868 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.7139;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104635069 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0162;AVGPOST=0.9994;RSQ=0.9827;ERATE=0.0004;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 104635092 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0028;AVGPOST=0.9995;RSQ=0.9124;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104635189 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9921;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104635197 . A AG 44347 PASS INDEL;BAVGPOST=1.000;BRSQ=0;LDAF=0.9976;AVGPOST=0.9970;RSQ=0.5150;ERATE=0.0005;THETA=0.0003;AC=2182;AN=2184 GT:DS:GL:BD 0.99908423 1 1 104635250 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5281;ERATE=0.0005;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104635255 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0045;AVGPOST=0.9985;RSQ=0.8671;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104635300 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6947;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104635381 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0084;AVGPOST=0.9988;RSQ=0.9437;ERATE=0.0003;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104635383 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.1925;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104635390 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.679;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4259;ERATE=0.0004;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104635416 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.815;LDAF=0.0037;AVGPOST=0.9963;RSQ=0.5896;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104635485 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.825;LDAF=0.0050;AVGPOST=0.9974;RSQ=0.7656;ERATE=0.0006;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104635540 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.746;LDAF=0.0038;AVGPOST=0.9980;RSQ=0.8165;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104635563 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0063;AVGPOST=0.9993;RSQ=0.9516;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104635678 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.754;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5880;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104635876 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0069;AVGPOST=0.9975;RSQ=0.8652;ERATE=0.0004;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104636103 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5521;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104636170 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0060;AVGPOST=0.9994;RSQ=0.9544;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104636229 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.798;LDAF=0.0199;AVGPOST=0.9891;RSQ=0.7897;ERATE=0.0004;THETA=0.0006;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104636283 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9989;RSQ=0.8604;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104636486 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7511;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104636520 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0319;AVGPOST=0.9980;RSQ=0.9725;ERATE=0.0004;THETA=0.0004;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 104636539 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4667;AVGPOST=0.9965;RSQ=0.9951;ERATE=0.0007;THETA=0.0006;AC=1020;AN=2184 GT:DS:GL:BD 0.46703297 0 1 104636555 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.841;LDAF=0.0105;AVGPOST=0.9953;RSQ=0.8377;ERATE=0.0004;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104636684 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4974;AVGPOST=0.9989;RSQ=0.9983;ERATE=0.0003;THETA=0.0006;AC=1087;AN=2184 GT:DS:GL:BD 0.49771062 0 1 104636784 . A AC 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.757;LDAF=0.0022;AVGPOST=0.9986;RSQ=0.7133;ERATE=0.0004;THETA=0.0024;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104636959 . CT C 59 PASS INDEL;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0007;AVGPOST=0.9990;RSQ=0.3960;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104636992 . TC T 59 PASS INDEL;BAVGPOST=1.000;BRSQ=0.711;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6058;ERATE=0.0005;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104636993 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8156;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104637137 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6107;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104637180 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104637185 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104637229 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5636;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104637241 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.670;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.6102;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104637283 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0291;AVGPOST=0.9994;RSQ=0.9903;ERATE=0.0003;THETA=0.0005;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 104637294 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8278;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104637304 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0017;AVGPOST=0.9995;RSQ=0.8976;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104637326 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0253;AVGPOST=0.9989;RSQ=0.9870;ERATE=0.0003;THETA=0.0005;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 104637333 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0061;AVGPOST=0.9987;RSQ=0.9248;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104637374 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0475;AVGPOST=0.9972;RSQ=0.9736;ERATE=0.0003;THETA=0.0010;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 104637387 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0248;AVGPOST=0.9998;RSQ=0.9961;ERATE=0.0003;THETA=0.0006;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 104637393 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0217;AVGPOST=0.9994;RSQ=0.9868;ERATE=0.0003;THETA=0.0002;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 104637415 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0041;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104637492 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.701;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104637620 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0019;AVGPOST=0.9974;RSQ=0.5616;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104637652 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0128;AVGPOST=0.9998;RSQ=0.9921;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104637653 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.712;LDAF=0.0017;AVGPOST=0.9986;RSQ=0.6612;ERATE=0.0004;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104637706 . ATATATC A 4885 PASS INDEL;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0268;AVGPOST=0.9957;RSQ=0.9488;ERATE=0.0005;THETA=0.0003;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 104637762 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.739;LDAF=0.0055;AVGPOST=0.9941;RSQ=0.5534;ERATE=0.0011;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104637922 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9077;ERATE=0.0003;THETA=0.0088;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104638114 . A AT 1863 PASS INDEL;BAVGPOST=0.972;BRSQ=0.716;LDAF=0.0620;AVGPOST=0.9530;RSQ=0.6815;ERATE=0.0080;THETA=0.0029;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 104638192 . TA T 8952 PASS INDEL;BAVGPOST=0.901;BRSQ=0.838;LDAF=0.3926;AVGPOST=0.9250;RSQ=0.8939;ERATE=0.0046;THETA=0.0002;AC=879;AN=2184 GT:DS:GL:BD 0.40247253 0 1 104638196 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.952;LDAF=0.4298;AVGPOST=0.9694;RSQ=0.9560;ERATE=0.0024;THETA=0.0006;AC=945;AN=2184 GT:DS:GL:BD 0.43269232 0 1 104638197 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.721;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104638213 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0049;AVGPOST=0.9984;RSQ=0.8777;ERATE=0.0003;THETA=0.0071;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104638293 rs11400899 A AG 6509 PASS INDEL;BAVGPOST=0.988;BRSQ=0.919;LDAF=0.0609;AVGPOST=0.9882;RSQ=0.9365;ERATE=0.0026;THETA=0.0005;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 104638336 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0026;AVGPOST=0.9991;RSQ=0.8606;ERATE=0.0003;THETA=0.0020;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104638485 rs36089782 CT C 9081 PASS INDEL;BAVGPOST=0.949;BRSQ=0.922;LDAF=0.3644;AVGPOST=0.8995;RSQ=0.8526;ERATE=0.0120;THETA=0.0017;AC=797;AN=2184 GT:DS:GL:BD 0.36492673 0 1 104638546 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.737;LDAF=0.0086;AVGPOST=0.9920;RSQ=0.6456;ERATE=0.0009;THETA=0.0011;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104638660 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0204;AVGPOST=0.9977;RSQ=0.9622;ERATE=0.0004;THETA=0.0008;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 104638829 . CAGG C 168 PASS INDEL;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8351;ERATE=0.0003;THETA=0.0039;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104638882 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9865;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104638915 . G GA 92 PASS INDEL;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8895;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104639414 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8963;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104639427 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.921;LDAF=0.0079;AVGPOST=0.9995;RSQ=0.9728;ERATE=0.0004;THETA=0.0017;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104639468 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7363;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104639494 . C CA 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8096;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104639612 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0051;AVGPOST=0.9985;RSQ=0.8679;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104639635 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9431;ERATE=0.0003;THETA=0.0028;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104639659 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.5223;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104639683 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104639709 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9817;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104639893 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7995;ERATE=0.0003;THETA=0.0051;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104639912 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0160;AVGPOST=0.9992;RSQ=0.9801;ERATE=0.0003;THETA=0.0008;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 104639923 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.621;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4783;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104639944 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0005;AVGPOST=0.9994;RSQ=0.5104;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104639947 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1428;AVGPOST=0.9984;RSQ=0.9944;ERATE=0.0008;THETA=0.0004;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 104639977 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0170;AVGPOST=0.9998;RSQ=0.9950;ERATE=0.0003;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104640042 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.987;LDAF=0.1086;AVGPOST=0.9982;RSQ=0.9936;ERATE=0.0004;THETA=0.0002;AC=238;AN=2184 GT:DS:GL:BD 0.10897436 0 1 104640064 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0042;AVGPOST=0.9992;RSQ=0.9260;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104640133 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.979;LDAF=0.9328;AVGPOST=0.9941;RSQ=0.9669;ERATE=0.0003;THETA=0.0006;AC=2038;AN=2184 GT:DS:GL:BD 0.93315017 1 1 104640184 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1372;AVGPOST=0.9979;RSQ=0.9936;ERATE=0.0004;THETA=0.0003;AC=300;AN=2184 GT:DS:GL:BD 0.13736264 0 1 104640269 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104640274 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5790;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104640283 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0032;AVGPOST=0.9991;RSQ=0.9057;ERATE=0.0003;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104640300 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104640492 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0172;AVGPOST=0.9993;RSQ=0.9814;ERATE=0.0003;THETA=0.0007;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104640552 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104640683 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104640726 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0892;AVGPOST=0.9989;RSQ=0.9955;ERATE=0.0003;THETA=0.0007;AC=195;AN=2184 GT:DS:GL:BD 0.08928572 0 1 104641008 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8928;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104641106 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0704;AVGPOST=0.9998;RSQ=0.9986;ERATE=0.0003;THETA=0.0007;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 104641169 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0018;AVGPOST=1.0000;RSQ=0.9879;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104641323 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0051;AVGPOST=0.9997;RSQ=0.9743;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104641329 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6208;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104641345 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0722;AVGPOST=0.9991;RSQ=0.9947;ERATE=0.0003;THETA=0.0011;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 104641398 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6130;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104641651 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0169;AVGPOST=0.9999;RSQ=0.9964;ERATE=0.0003;THETA=0.0012;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104641697 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.711;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5775;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104641730 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.859;LDAF=0.0042;AVGPOST=0.9984;RSQ=0.8702;ERATE=0.0005;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104641742 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104641758 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0107;AVGPOST=0.9992;RSQ=0.9652;ERATE=0.0003;THETA=0.0023;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104641803 . CCA C 2012 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0169;AVGPOST=0.9998;RSQ=0.9937;ERATE=0.0003;THETA=0.0026;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104641834 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.780;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104641842 . T TAC 70097 PASS INDEL;BAVGPOST=0.988;BRSQ=0.985;LDAF=0.4746;AVGPOST=0.9694;RSQ=0.9548;ERATE=0.0069;THETA=0.0007;AC=1034;AN=2184 GT:DS:GL:BD 0.47344321 0 1 104641924 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.992;LDAF=0.5780;AVGPOST=0.9948;RSQ=0.9919;ERATE=0.0006;THETA=0.0006;AC=1260;AN=2184 GT:DS:GL:BD 0.57692307 1 1 104642082 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0080;AVGPOST=0.9996;RSQ=0.9751;ERATE=0.0004;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104642083 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0078;AVGPOST=0.9999;RSQ=0.9916;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104642266 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104642364 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0078;AVGPOST=0.9999;RSQ=0.9944;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104642419 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0078;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104642436 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0078;AVGPOST=0.9999;RSQ=0.9944;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104642508 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8016;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104642557 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0072;AVGPOST=0.9973;RSQ=0.8568;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104642584 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5551;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104642600 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0097;AVGPOST=0.9982;RSQ=0.9390;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104642616 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0038;AVGPOST=0.9970;RSQ=0.6864;ERATE=0.0007;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104642625 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.8957;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104642649 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7401;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104642692 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104642694 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0022;AVGPOST=0.9982;RSQ=0.7458;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104642828 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0083;AVGPOST=0.9990;RSQ=0.9478;ERATE=0.0004;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104642947 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0083;AVGPOST=0.9989;RSQ=0.9380;ERATE=0.0005;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104643006 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3883;AVGPOST=0.9915;RSQ=0.9881;ERATE=0.0005;THETA=0.0007;AC=842;AN=2184 GT:DS:GL:BD 0.38553113 0 1 104643067 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0013;AVGPOST=0.9981;RSQ=0.4179;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104643277 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0034;AVGPOST=0.9989;RSQ=0.8674;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104643384 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0019;AVGPOST=0.9976;RSQ=0.5160;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104643470 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0199;AVGPOST=0.9985;RSQ=0.9724;ERATE=0.0004;THETA=0.0008;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 104643500 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5340;AVGPOST=0.9929;RSQ=0.9895;ERATE=0.0005;THETA=0.0006;AC=1166;AN=2184 GT:DS:GL:BD 0.53388280 1 1 104643726 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6057;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104643802 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0170;AVGPOST=0.9998;RSQ=0.9947;ERATE=0.0003;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104643816 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.782;LDAF=0.0033;AVGPOST=0.9984;RSQ=0.8000;ERATE=0.0007;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104643913 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0025;AVGPOST=0.9979;RSQ=0.6473;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104643922 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7946;ERATE=0.0004;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104643925 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.727;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7772;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104643926 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.6725;ERATE=0.0007;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104643944 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.844;LDAF=0.0050;AVGPOST=0.9974;RSQ=0.8070;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104643961 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104643983 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0024;AVGPOST=0.9992;RSQ=0.8849;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104643991 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0096;AVGPOST=0.9989;RSQ=0.9478;ERATE=0.0005;THETA=0.0007;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104644030 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7339;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104644040 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.845;LDAF=0.0054;AVGPOST=0.9977;RSQ=0.8372;ERATE=0.0004;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104644095 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4467;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104644269 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7724;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104644334 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0096;AVGPOST=0.9991;RSQ=0.9549;ERATE=0.0005;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104644438 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6866;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104644516 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104644726 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0094;AVGPOST=0.9992;RSQ=0.9661;ERATE=0.0003;THETA=0.0008;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104644774 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0183;AVGPOST=0.9984;RSQ=0.9703;ERATE=0.0003;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 104644983 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.4425;ERATE=0.0003;THETA=0.0019;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104644991 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.986;LDAF=0.4560;AVGPOST=0.9883;RSQ=0.9838;ERATE=0.0009;THETA=0.0011;AC=994;AN=2184 GT:DS:GL:BD 0.45512819 0 1 104644997 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5164;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104645008 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.5486;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104645040 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0153;AVGPOST=0.9995;RSQ=0.9864;ERATE=0.0003;THETA=0.0013;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 104645044 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104645268 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0164;AVGPOST=0.9976;RSQ=0.9371;ERATE=0.0004;THETA=0.0007;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 104645271 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.9017;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104645328 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6019;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104645343 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0082;AVGPOST=0.9992;RSQ=0.9531;ERATE=0.0003;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104645360 rs66808177 CTCCCAA C 62486 PASS INDEL;BAVGPOST=0.984;BRSQ=0.977;LDAF=0.4581;AVGPOST=0.9662;RSQ=0.9516;ERATE=0.0047;THETA=0.0036;AC=1005;AN=2184 GT:DS:GL:BD 0.46016484 0 1 104645498 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0025;AVGPOST=0.9976;RSQ=0.6197;ERATE=0.0003;THETA=0.0020;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104645572 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0074;AVGPOST=0.9985;RSQ=0.9256;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104645759 . G GA 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.723;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104645767 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.984;LDAF=0.5705;AVGPOST=0.9866;RSQ=0.9795;ERATE=0.0005;THETA=0.0229;AC=1248;AN=2184 GT:DS:GL:BD 0.57142860 1 1 104645852 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0146;AVGPOST=0.9989;RSQ=0.9698;ERATE=0.0004;THETA=0.0112;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 104646042 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4806;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104646271 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0076;AVGPOST=0.9997;RSQ=0.9872;ERATE=0.0003;THETA=0.0085;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104646273 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7514;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104646322 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.816;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7631;ERATE=0.0004;THETA=0.0063;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104646683 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.956;LDAF=0.9151;AVGPOST=0.9842;RSQ=0.9230;ERATE=0.0007;THETA=0.0170;AC=2004;AN=2184 GT:DS:GL:BD 0.91758239 1 1 104646788 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0004;AVGPOST=0.9995;RSQ=0.5338;ERATE=0.0003;THETA=0.0083;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104646800 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8176;ERATE=0.0003;THETA=0.0136;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104646821 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.922;LDAF=0.0588;AVGPOST=0.9862;RSQ=0.9023;ERATE=0.0008;THETA=0.0148;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 104646842 rs36071972 C CT 1172 PASS INDEL;BAVGPOST=0.973;BRSQ=0.706;LDAF=0.0521;AVGPOST=0.9521;RSQ=0.6153;ERATE=0.0115;THETA=0.0101;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 104646873 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.801;LDAF=0.0037;AVGPOST=0.9990;RSQ=0.8816;ERATE=0.0004;THETA=0.0108;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104646956 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0038;AVGPOST=0.9972;RSQ=0.6950;ERATE=0.0006;THETA=0.0179;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104646989 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.820;LDAF=0.0085;AVGPOST=0.9967;RSQ=0.8305;ERATE=0.0009;THETA=0.0127;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104647019 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.865;LDAF=0.0065;AVGPOST=0.9953;RSQ=0.7136;ERATE=0.0011;THETA=0.0066;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104647055 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.960;LDAF=0.0388;AVGPOST=0.9992;RSQ=0.9912;ERATE=0.0003;THETA=0.0012;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 104647645 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0043;AVGPOST=0.9982;RSQ=0.8547;ERATE=0.0004;THETA=0.0046;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104647679 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.727;LDAF=0.0028;AVGPOST=0.9986;RSQ=0.8109;ERATE=0.0005;THETA=0.0039;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104647695 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.796;LDAF=0.0346;AVGPOST=0.9847;RSQ=0.8425;ERATE=0.0016;THETA=0.0013;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 104647770 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.689;LDAF=0.0393;AVGPOST=0.9760;RSQ=0.7585;ERATE=0.0034;THETA=0.0005;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 104648325 . TCTCA T 49 PASS INDEL;BAVGPOST=0.999;BRSQ=0.623;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4561;ERATE=0.0005;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104648432 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.849;BRSQ=0.490;LDAF=0.8074;AVGPOST=0.8218;RSQ=0.5429;ERATE=0.0404;THETA=0.0010;AC=1887;AN=2184 GT:DS:GL:BD 0.86401099 1 1 104648610 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.806;LDAF=0.0266;AVGPOST=0.9894;RSQ=0.8509;ERATE=0.0004;THETA=0.0006;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 104648671 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.808;LDAF=0.0279;AVGPOST=0.9882;RSQ=0.8373;ERATE=0.0005;THETA=0.0016;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 104648674 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.981;LDAF=0.2660;AVGPOST=0.9896;RSQ=0.9793;ERATE=0.0009;THETA=0.0005;AC=581;AN=2184 GT:DS:GL:BD 0.26602563 0 1 104648765 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.982;LDAF=0.0407;AVGPOST=0.9980;RSQ=0.9827;ERATE=0.0003;THETA=0.0008;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 104649092 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0397;AVGPOST=0.9985;RSQ=0.9851;ERATE=0.0003;THETA=0.0006;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 104649104 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.2668;AVGPOST=0.9920;RSQ=0.9844;ERATE=0.0007;THETA=0.0012;AC=583;AN=2184 GT:DS:GL:BD 0.26694140 0 1 104649227 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104649982 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.930;LDAF=0.0239;AVGPOST=0.9959;RSQ=0.9287;ERATE=0.0007;THETA=0.0034;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 104649988 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8481;ERATE=0.0003;THETA=0.0024;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104649999 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.785;LDAF=0.0300;AVGPOST=0.9935;RSQ=0.9132;ERATE=0.0009;THETA=0.0008;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 104650272 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5796;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104650370 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0402;AVGPOST=0.9985;RSQ=0.9845;ERATE=0.0003;THETA=0.0027;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 104650400 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104650460 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.982;LDAF=0.0184;AVGPOST=0.9985;RSQ=0.9707;ERATE=0.0004;THETA=0.0047;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 104650805 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.726;LDAF=0.9769;AVGPOST=0.9838;RSQ=0.7168;ERATE=0.0016;THETA=0.0008;AC=2147;AN=2184 GT:DS:GL:BD 0.98305863 1 1 104650851 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.555;LDAF=0.0056;AVGPOST=0.9924;RSQ=0.4276;ERATE=0.0005;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104650907 rs61307993 TA T 26 PASS INDEL;BAVGPOST=0.997;BRSQ=0.399;LDAF=0.0055;AVGPOST=0.9925;RSQ=0.4862;ERATE=0.0008;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104650944 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.829;LDAF=0.0082;AVGPOST=0.9983;RSQ=0.9153;ERATE=0.0003;THETA=0.0053;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104651399 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.771;LDAF=0.0278;AVGPOST=0.9884;RSQ=0.8594;ERATE=0.0006;THETA=0.0013;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 104651770 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.5962;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104651771 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0395;AVGPOST=0.9996;RSQ=0.9954;ERATE=0.0002;THETA=0.0003;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 104651914 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2501;AVGPOST=0.9977;RSQ=0.9955;ERATE=0.0004;THETA=0.0005;AC=548;AN=2184 GT:DS:GL:BD 0.25091577 0 1 104651929 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0858;AVGPOST=0.9992;RSQ=0.9968;ERATE=0.0003;THETA=0.0016;AC=188;AN=2184 GT:DS:GL:BD 0.08608059 0 1 104652082 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6005;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104652155 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6443;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104652218 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.1076;AVGPOST=0.9989;RSQ=0.9952;ERATE=0.0004;THETA=0.0008;AC=236;AN=2184 GT:DS:GL:BD 0.10805861 0 1 104652267 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.974;LDAF=0.0980;AVGPOST=0.9970;RSQ=0.9902;ERATE=0.0003;THETA=0.0006;AC=217;AN=2184 GT:DS:GL:BD 0.09935898 0 1 104652268 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.974;LDAF=0.0973;AVGPOST=0.9969;RSQ=0.9901;ERATE=0.0002;THETA=0.0010;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 104652271 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.938;LDAF=0.0407;AVGPOST=0.9926;RSQ=0.9292;ERATE=0.0003;THETA=0.0011;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 104652284 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0020;AVGPOST=0.9974;RSQ=0.5094;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104652391 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.965;LDAF=0.0923;AVGPOST=0.9956;RSQ=0.9864;ERATE=0.0004;THETA=0.0005;AC=201;AN=2184 GT:DS:GL:BD 0.09203297 0 1 104652495 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5103;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104652537 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0303;AVGPOST=0.9996;RSQ=0.9943;ERATE=0.0002;THETA=0.0003;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 104652650 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0027;AVGPOST=0.9976;RSQ=0.6749;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104652807 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0016;AVGPOST=0.9983;RSQ=0.5944;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104652834 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7822;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104652847 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0039;AVGPOST=0.9979;RSQ=0.8117;ERATE=0.0002;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104652853 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.960;LDAF=0.2497;AVGPOST=0.9909;RSQ=0.9837;ERATE=0.0008;THETA=0.0006;AC=544;AN=2184 GT:DS:GL:BD 0.24908425 0 1 104652910 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0045;AVGPOST=0.9993;RSQ=0.9408;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104652969 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9729;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104652974 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0031;AVGPOST=0.9995;RSQ=0.9371;ERATE=0.0002;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104652980 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.1069;AVGPOST=0.9989;RSQ=0.9951;ERATE=0.0003;THETA=0.0006;AC=234;AN=2184 GT:DS:GL:BD 0.10714286 0 1 104652984 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.1069;AVGPOST=0.9987;RSQ=0.9947;ERATE=0.0003;THETA=0.0004;AC=234;AN=2184 GT:DS:GL:BD 0.10714286 0 1 104652993 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0066;AVGPOST=0.9991;RSQ=0.9507;ERATE=0.0003;THETA=0.0009;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104653000 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0228;AVGPOST=0.9964;RSQ=0.9387;ERATE=0.0006;THETA=0.0008;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 104653081 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.723;LDAF=0.0031;AVGPOST=0.9959;RSQ=0.4531;ERATE=0.0007;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104653102 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6833;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104653179 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.660;LDAF=0.0014;AVGPOST=0.9986;RSQ=0.6344;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104653250 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.706;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.7956;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104653259 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1082;AVGPOST=0.9990;RSQ=0.9955;ERATE=0.0003;THETA=0.0009;AC=236;AN=2184 GT:DS:GL:BD 0.10805861 0 1 104653263 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1080;AVGPOST=0.9995;RSQ=0.9977;ERATE=0.0003;THETA=0.0004;AC=236;AN=2184 GT:DS:GL:BD 0.10805861 0 1 104653381 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8413;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104653404 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0501;AVGPOST=0.9992;RSQ=0.9925;ERATE=0.0002;THETA=0.0004;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 104653543 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0443;AVGPOST=0.9989;RSQ=0.9881;ERATE=0.0003;THETA=0.0005;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 104653571 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0301;AVGPOST=0.9982;RSQ=0.9782;ERATE=0.0003;THETA=0.0017;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 104653616 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1079;AVGPOST=0.9993;RSQ=0.9967;ERATE=0.0004;THETA=0.0009;AC=236;AN=2184 GT:DS:GL:BD 0.10805861 0 1 104653645 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0993;AVGPOST=0.9987;RSQ=0.9957;ERATE=0.0003;THETA=0.0033;AC=217;AN=2184 GT:DS:GL:BD 0.09935898 0 1 104653846 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0511;AVGPOST=0.9979;RSQ=0.9827;ERATE=0.0004;THETA=0.0003;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 104653853 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0447;AVGPOST=0.9988;RSQ=0.9887;ERATE=0.0003;THETA=0.0006;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 104653867 . AC A 51 PASS INDEL;BAVGPOST=0.998;BRSQ=0.539;LDAF=0.0012;AVGPOST=0.9982;RSQ=0.3740;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104653980 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6066;ERATE=0.0002;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104653981 . AG A 48 PASS INDEL;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7431;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104653996 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0007;AVGPOST=0.9992;RSQ=0.6151;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104654173 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1087;AVGPOST=0.9989;RSQ=0.9955;ERATE=0.0005;THETA=0.0008;AC=238;AN=2184 GT:DS:GL:BD 0.10897436 0 1 104654267 . G GA 16 PASS INDEL;BAVGPOST=0.999;BRSQ=0.421;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.6125;ERATE=0.0002;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104654325 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5092;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104654465 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0092;AVGPOST=0.9999;RSQ=0.9928;ERATE=0.0002;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104654497 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1080;AVGPOST=0.9997;RSQ=0.9988;ERATE=0.0002;THETA=0.0009;AC=236;AN=2184 GT:DS:GL:BD 0.10805861 0 1 104654502 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7895;ERATE=0.0002;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104654758 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7131;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104654762 rs74344093 TC T 12380 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1112;AVGPOST=0.9948;RSQ=0.9812;ERATE=0.0007;THETA=0.0008;AC=243;AN=2184 GT:DS:GL:BD 0.11126374 0 1 104654772 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.703;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.4963;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104654856 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0063;AVGPOST=0.9980;RSQ=0.8698;ERATE=0.0003;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104654919 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.684;LDAF=0.0132;AVGPOST=0.9874;RSQ=0.6444;ERATE=0.0009;THETA=0.0009;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104654992 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.704;LDAF=0.0013;AVGPOST=0.9980;RSQ=0.4140;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104655032 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.964;LDAF=0.2078;AVGPOST=0.9930;RSQ=0.9858;ERATE=0.0008;THETA=0.0005;AC=455;AN=2184 GT:DS:GL:BD 0.20833333 0 1 104655083 . A AT 2860 PASS INDEL;BAVGPOST=0.923;BRSQ=0.715;LDAF=0.1606;AVGPOST=0.8818;RSQ=0.6856;ERATE=0.0105;THETA=0.0004;AC=289;AN=2184 GT:DS:GL:BD 0.13232601 0 1 104655089 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.646;LDAF=0.0106;AVGPOST=0.9894;RSQ=0.6227;ERATE=0.0006;THETA=0.0008;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104655187 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0451;AVGPOST=0.9984;RSQ=0.9844;ERATE=0.0003;THETA=0.0006;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 104655199 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.938;LDAF=0.0762;AVGPOST=0.9886;RSQ=0.9530;ERATE=0.0007;THETA=0.0004;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 104655209 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.908;LDAF=0.0807;AVGPOST=0.9868;RSQ=0.9499;ERATE=0.0007;THETA=0.0002;AC=176;AN=2184 GT:DS:GL:BD 0.08058608 0 1 104655230 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.938;LDAF=0.1834;AVGPOST=0.9838;RSQ=0.9645;ERATE=0.0008;THETA=0.0019;AC=401;AN=2184 GT:DS:GL:BD 0.18360806 0 1 104655245 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0036;AVGPOST=0.9991;RSQ=0.8865;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104655422 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104655448 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0048;AVGPOST=0.9990;RSQ=0.9082;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104655606 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0472;AVGPOST=0.9998;RSQ=0.9977;ERATE=0.0002;THETA=0.0004;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 104655722 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0993;AVGPOST=0.9996;RSQ=0.9985;ERATE=0.0002;THETA=0.0003;AC=217;AN=2184 GT:DS:GL:BD 0.09935898 0 1 104655813 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0002;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104655865 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0069;AVGPOST=0.9990;RSQ=0.9355;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104655886 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0394;AVGPOST=0.9998;RSQ=0.9977;ERATE=0.0002;THETA=0.0009;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 104655887 . T TTCCAC 31887 PASS INDEL;BAVGPOST=0.991;BRSQ=0.985;LDAF=0.3062;AVGPOST=0.9944;RSQ=0.9912;ERATE=0.0009;THETA=0.0007;AC=671;AN=2184 GT:DS:GL:BD 0.30723444 0 1 104655934 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7079;ERATE=0.0002;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104655992 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0023;AVGPOST=0.9995;RSQ=0.9102;ERATE=0.0002;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104656063 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0067;AVGPOST=0.9993;RSQ=0.9576;ERATE=0.0002;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104656293 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1078;AVGPOST=0.9988;RSQ=0.9947;ERATE=0.0003;THETA=0.0012;AC=236;AN=2184 GT:DS:GL:BD 0.10805861 0 1 104656427 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.512;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6288;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104656608 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5009;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104656666 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6133;ERATE=0.0004;THETA=0.0050;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104656772 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0392;AVGPOST=0.9994;RSQ=0.9928;ERATE=0.0002;THETA=0.0012;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 104656794 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104656834 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9057;ERATE=0.0002;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104656904 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.988;LDAF=0.0971;AVGPOST=0.9947;RSQ=0.9760;ERATE=0.0004;THETA=0.0004;AC=211;AN=2184 GT:DS:GL:BD 0.09661172 0 1 104657168 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.866;LDAF=0.0193;AVGPOST=0.9984;RSQ=0.9661;ERATE=0.0003;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 104657256 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6183;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104657369 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6466;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104657404 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9824;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104657859 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104657868 . A AGATG 1620 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0080;AVGPOST=0.9977;RSQ=0.8800;ERATE=0.0005;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104657905 rs34475402 A AGAT 5483 PASS INDEL;BAVGPOST=0.937;BRSQ=0.673;LDAF=0.1487;AVGPOST=0.8866;RSQ=0.6079;ERATE=0.0596;THETA=0.0002;AC=235;AN=2184 GT:DS:GL:BD 0.10760073 0 1 104657962 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6901;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104657977 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.763;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9047;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104657985 . AT A 97 PASS INDEL;BAVGPOST=0.998;BRSQ=0.692;LDAF=0.0067;AVGPOST=0.9970;RSQ=0.8121;ERATE=0.0007;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104657992 . AT A 171 PASS INDEL;BAVGPOST=0.996;BRSQ=0.712;LDAF=0.0131;AVGPOST=0.9891;RSQ=0.6797;ERATE=0.0013;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104657996 . A AT 1014 PASS INDEL;BAVGPOST=0.980;BRSQ=0.750;LDAF=0.0547;AVGPOST=0.9546;RSQ=0.6373;ERATE=0.0237;THETA=0.0004;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 104658004 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.783;LDAF=0.0062;AVGPOST=0.9978;RSQ=0.8563;ERATE=0.0003;THETA=0.0011;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104658174 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4680;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104658175 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.970;LDAF=0.0341;AVGPOST=0.9964;RSQ=0.9559;ERATE=0.0003;THETA=0.0003;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 104658307 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0261;AVGPOST=0.9988;RSQ=0.9837;ERATE=0.0003;THETA=0.0009;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 104658315 . A AG 28 PASS INDEL;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5101;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104658429 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6129;AVGPOST=0.9982;RSQ=0.9972;ERATE=0.0004;THETA=0.0004;AC=1341;AN=2184 GT:DS:GL:BD 0.61401099 1 1 104658729 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.7907;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104658741 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0051;AVGPOST=0.9982;RSQ=0.8580;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104658898 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5120;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104659025 . A AC 63 PASS INDEL;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8717;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104659228 . CA C 33 PASS INDEL;BAVGPOST=0.994;BRSQ=0.641;LDAF=0.0112;AVGPOST=0.9957;RSQ=0.8472;ERATE=0.0005;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104659240 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5995;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104659308 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.920;LDAF=0.0182;AVGPOST=0.9974;RSQ=0.9382;ERATE=0.0004;THETA=0.0008;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 104659456 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6996;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104659476 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104659645 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5976;AVGPOST=0.9973;RSQ=0.9954;ERATE=0.0008;THETA=0.0003;AC=1307;AN=2184 GT:DS:GL:BD 0.59844321 1 1 104659733 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7778;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104659819 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0330;AVGPOST=0.9997;RSQ=0.9955;ERATE=0.0003;THETA=0.0002;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 104659821 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6772;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104660000 . T TG 25040 PASS INDEL;BAVGPOST=0.985;BRSQ=0.975;LDAF=0.5939;AVGPOST=0.9943;RSQ=0.9908;ERATE=0.0009;THETA=0.0004;AC=1298;AN=2184 GT:DS:GL:BD 0.59432232 1 1 104660032 . G GT 272 PASS INDEL;BAVGPOST=0.971;BRSQ=0.507;LDAF=0.0506;AVGPOST=0.9372;RSQ=0.4858;ERATE=0.0130;THETA=0.0002;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 104660033 rs34289449 G GT 74971 PASS INDEL;BAVGPOST=0.985;BRSQ=0.975;LDAF=0.5948;AVGPOST=0.9929;RSQ=0.9887;ERATE=0.0011;THETA=0.0003;AC=1300;AN=2184 GT:DS:GL:BD 0.59523809 1 1 104660034 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.549;LDAF=0.0021;AVGPOST=0.9982;RSQ=0.6180;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104660125 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0350;AVGPOST=0.9968;RSQ=0.9644;ERATE=0.0004;THETA=0.0008;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 104660292 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7308;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104660319 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6814;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104660339 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104660475 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5218;AVGPOST=0.9980;RSQ=0.9966;ERATE=0.0003;THETA=0.0006;AC=1140;AN=2184 GT:DS:GL:BD 0.52197802 1 1 104660565 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6213;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104660585 . CG C 1515 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0161;AVGPOST=0.9994;RSQ=0.9842;ERATE=0.0004;THETA=0.0002;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 104660610 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0023;AVGPOST=0.9984;RSQ=0.7268;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104660611 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0089;AVGPOST=0.9985;RSQ=0.9280;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104660669 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8400;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104660794 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0036;AVGPOST=0.9982;RSQ=0.8089;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104660942 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0074;AVGPOST=0.9988;RSQ=0.9355;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104661063 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5220;AVGPOST=0.9983;RSQ=0.9970;ERATE=0.0006;THETA=0.0003;AC=1142;AN=2184 GT:DS:GL:BD 0.52289379 1 1 104661227 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0305;AVGPOST=0.9973;RSQ=0.9703;ERATE=0.0003;THETA=0.0004;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 104661360 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.712;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7298;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104661610 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6151;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104661626 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.812;LDAF=0.0046;AVGPOST=0.9982;RSQ=0.8249;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104661629 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0004;AVGPOST=0.9996;RSQ=0.6185;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104661660 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104661740 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0021;AVGPOST=0.9976;RSQ=0.5536;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104661791 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5222;AVGPOST=0.9979;RSQ=0.9965;ERATE=0.0004;THETA=0.0008;AC=1142;AN=2184 GT:DS:GL:BD 0.52289379 1 1 104661811 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0161;AVGPOST=0.9993;RSQ=0.9821;ERATE=0.0003;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 104661825 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5222;AVGPOST=0.9974;RSQ=0.9955;ERATE=0.0005;THETA=0.0004;AC=1142;AN=2184 GT:DS:GL:BD 0.52289379 1 1 104661832 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6066;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104661849 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5956;AVGPOST=0.9945;RSQ=0.9902;ERATE=0.0010;THETA=0.0003;AC=1304;AN=2184 GT:DS:GL:BD 0.59706962 1 1 104661993 . G GT 30 PASS INDEL;BAVGPOST=0.999;BRSQ=0.536;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7005;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104662031 . AC A 1436 PASS INDEL;BAVGPOST=0.998;BRSQ=0.935;LDAF=0.0155;AVGPOST=0.9961;RSQ=0.8939;ERATE=0.0006;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 104662183 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2944;AVGPOST=0.9985;RSQ=0.9966;ERATE=0.0004;THETA=0.0001;AC=643;AN=2184 GT:DS:GL:BD 0.29441392 0 1 104662204 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.888;LDAF=0.1150;AVGPOST=0.9796;RSQ=0.9203;ERATE=0.0034;THETA=0.0002;AC=255;AN=2184 GT:DS:GL:BD 0.11675824 0 1 104662266 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2945;AVGPOST=0.9990;RSQ=0.9977;ERATE=0.0004;THETA=0.0003;AC=643;AN=2184 GT:DS:GL:BD 0.29441392 0 1 104662325 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0007;AVGPOST=0.9990;RSQ=0.4008;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104662371 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0596;AVGPOST=0.9981;RSQ=0.9884;ERATE=0.0005;THETA=0.0005;AC=131;AN=2184 GT:DS:GL:BD 0.05998169 0 1 104662451 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.4640;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104662505 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.904;LDAF=0.0085;AVGPOST=0.9992;RSQ=0.9571;ERATE=0.0004;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104662534 . T TG 28228 PASS INDEL;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2965;AVGPOST=0.9942;RSQ=0.9878;ERATE=0.0016;THETA=0.0003;AC=646;AN=2184 GT:DS:GL:BD 0.29578754 0 1 104662648 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2240;AVGPOST=0.9968;RSQ=0.9922;ERATE=0.0005;THETA=0.0005;AC=489;AN=2184 GT:DS:GL:BD 0.22390109 0 1 104662656 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0024;AVGPOST=0.9990;RSQ=0.8361;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104662663 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.737;LDAF=0.0079;AVGPOST=0.9969;RSQ=0.8313;ERATE=0.0005;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104662912 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0014;AVGPOST=0.9979;RSQ=0.4150;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104662921 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0208;AVGPOST=0.9993;RSQ=0.9884;ERATE=0.0003;THETA=0.0002;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 104663057 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5792;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104663067 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.946;LDAF=0.2835;AVGPOST=0.9554;RSQ=0.9157;ERATE=0.0066;THETA=0.0004;AC=621;AN=2184 GT:DS:GL:BD 0.28434065 0 1 104663194 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.688;LDAF=0.0023;AVGPOST=0.9982;RSQ=0.6911;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104663235 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.2947;AVGPOST=0.9978;RSQ=0.9953;ERATE=0.0006;THETA=0.0003;AC=643;AN=2184 GT:DS:GL:BD 0.29441392 0 1 104663270 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.621;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7061;ERATE=0.0003;THETA=0.0030;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104663300 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0084;AVGPOST=0.9986;RSQ=0.9392;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104663303 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.985;LDAF=0.2945;AVGPOST=0.9963;RSQ=0.9932;ERATE=0.0008;THETA=0.0003;AC=644;AN=2184 GT:DS:GL:BD 0.29487181 0 1 104663402 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6617;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104663418 . AAAAC A 703 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0064;AVGPOST=0.9982;RSQ=0.9129;ERATE=0.0004;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104663438 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2944;AVGPOST=0.9999;RSQ=0.9997;ERATE=0.0002;THETA=0.0002;AC=643;AN=2184 GT:DS:GL:BD 0.29441392 0 1 104663473 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2945;AVGPOST=0.9993;RSQ=0.9984;ERATE=0.0003;THETA=0.0004;AC=643;AN=2184 GT:DS:GL:BD 0.29441392 0 1 104663492 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0106;AVGPOST=0.9999;RSQ=0.9942;ERATE=0.0002;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104663620 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9830;ERATE=0.0002;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104663741 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0089;AVGPOST=0.9995;RSQ=0.9718;ERATE=0.0003;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104663781 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.980;LDAF=0.0617;AVGPOST=0.9988;RSQ=0.9925;ERATE=0.0003;THETA=0.0003;AC=135;AN=2184 GT:DS:GL:BD 0.06181319 0 1 104663827 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0042;AVGPOST=0.9973;RSQ=0.7632;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104663944 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0008;AVGPOST=0.9989;RSQ=0.5294;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104663963 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1304;AVGPOST=0.9992;RSQ=0.9971;ERATE=0.0003;THETA=0.0015;AC=285;AN=2184 GT:DS:GL:BD 0.13049451 0 1 104664175 . A AT 36917 PASS INDEL;BAVGPOST=0.989;BRSQ=0.962;LDAF=0.8292;AVGPOST=0.9891;RSQ=0.9704;ERATE=0.0003;THETA=0.0002;AC=1813;AN=2184 GT:DS:GL:BD 0.83012819 1 1 104664253 rs11427392 T TA 112923 PASS INDEL;BAVGPOST=0.989;BRSQ=0.962;LDAF=0.8293;AVGPOST=0.9904;RSQ=0.9737;ERATE=0.0004;THETA=0.0002;AC=1812;AN=2184 GT:DS:GL:BD 0.82967031 1 1 104664254 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104664476 . TAAC T 231 PASS INDEL;BAVGPOST=1.000;BRSQ=0.731;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.4938;ERATE=0.0005;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104664554 . G GA 57 PASS INDEL;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8227;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104664645 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8316;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104664714 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2284;AVGPOST=0.9997;RSQ=0.9993;ERATE=0.0003;THETA=0.0003;AC=498;AN=2184 GT:DS:GL:BD 0.22802198 0 1 104664811 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104664831 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1699;AVGPOST=0.9996;RSQ=0.9989;ERATE=0.0002;THETA=0.0004;AC=371;AN=2184 GT:DS:GL:BD 0.16987179 0 1 104664832 . AC A 858 PASS INDEL;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0055;AVGPOST=0.9989;RSQ=0.9125;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104664933 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.648;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6951;ERATE=0.0007;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104664940 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=0.9998;RSQ=0.9887;ERATE=0.0002;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104664948 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2941;AVGPOST=0.9974;RSQ=0.9952;ERATE=0.0012;THETA=0.0004;AC=642;AN=2184 GT:DS:GL:BD 0.29395604 0 1 104665015 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1245;AVGPOST=0.9995;RSQ=0.9981;ERATE=0.0002;THETA=0.0002;AC=272;AN=2184 GT:DS:GL:BD 0.12454212 0 1 104665071 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9247;ERATE=0.0002;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104665108 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1346;AVGPOST=0.9986;RSQ=0.9956;ERATE=0.0003;THETA=0.0002;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 104665150 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0018;AVGPOST=0.9987;RSQ=0.6944;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104665158 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0082;AVGPOST=0.9992;RSQ=0.9551;ERATE=0.0004;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104665329 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.680;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104665338 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0327;AVGPOST=0.9994;RSQ=0.9909;ERATE=0.0004;THETA=0.0003;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 104665448 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8501;AVGPOST=0.9994;RSQ=0.9977;ERATE=0.0003;THETA=0.0002;AC=1857;AN=2184 GT:DS:GL:BD 0.85027474 1 1 104665569 . AC A 516 PASS INDEL;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9670;ERATE=0.0003;THETA=0.0001;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104665614 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9319;ERATE=0.0002;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104665615 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.6629;AVGPOST=0.9981;RSQ=0.9966;ERATE=0.0003;THETA=0.0007;AC=1449;AN=2184 GT:DS:GL:BD 0.66346157 1 1 104665645 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.3589;AVGPOST=0.9990;RSQ=0.9980;ERATE=0.0003;THETA=0.0003;AC=784;AN=2184 GT:DS:GL:BD 0.35897437 0 1 104665662 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8501;AVGPOST=0.9991;RSQ=0.9969;ERATE=0.0003;THETA=0.0003;AC=1857;AN=2184 GT:DS:GL:BD 0.85027474 1 1 104665665 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9773;ERATE=0.0002;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104666337 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1341;AVGPOST=0.9989;RSQ=0.9963;ERATE=0.0004;THETA=0.0004;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 104666361 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.590;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5839;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104666383 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0064;AVGPOST=0.9983;RSQ=0.8954;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104666439 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8889;ERATE=0.0002;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104666472 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0032;AVGPOST=1.0000;RSQ=0.9932;ERATE=0.0002;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104666479 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1341;AVGPOST=0.9992;RSQ=0.9969;ERATE=0.0003;THETA=0.0003;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 104666485 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.948;LDAF=0.9862;AVGPOST=0.9976;RSQ=0.9403;ERATE=0.0005;THETA=0.0002;AC=2156;AN=2184 GT:DS:GL:BD 0.98717946 1 1 104666500 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0039;AVGPOST=0.9991;RSQ=0.9030;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104666507 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104666618 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2947;AVGPOST=0.9989;RSQ=0.9976;ERATE=0.0004;THETA=0.0008;AC=643;AN=2184 GT:DS:GL:BD 0.29441392 0 1 104666643 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0326;AVGPOST=0.9997;RSQ=0.9955;ERATE=0.0003;THETA=0.0003;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 104666742 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.509;LDAF=0.0085;AVGPOST=0.9884;RSQ=0.4771;ERATE=0.0025;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104666954 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0035;AVGPOST=0.9988;RSQ=0.8536;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104667132 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2282;AVGPOST=0.9990;RSQ=0.9974;ERATE=0.0004;THETA=0.0002;AC=498;AN=2184 GT:DS:GL:BD 0.22802198 0 1 104667145 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0146;AVGPOST=0.9992;RSQ=0.9774;ERATE=0.0003;THETA=0.0007;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104667178 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0341;AVGPOST=0.9963;RSQ=0.9550;ERATE=0.0004;THETA=0.0011;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 104667220 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.871;LDAF=0.0061;AVGPOST=0.9966;RSQ=0.7586;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104667337 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0117;AVGPOST=0.9985;RSQ=0.9383;ERATE=0.0005;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104667551 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5854;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104667685 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0152;AVGPOST=0.9990;RSQ=0.9738;ERATE=0.0003;THETA=0.0005;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 104667708 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0029;AVGPOST=0.9976;RSQ=0.6698;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104667718 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0023;AVGPOST=0.9988;RSQ=0.7710;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104667723 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0040;AVGPOST=0.9986;RSQ=0.8672;ERATE=0.0002;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104667801 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.690;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4316;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104667849 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0125;AVGPOST=0.9991;RSQ=0.9709;ERATE=0.0004;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104667930 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9500;ERATE=0.0003;THETA=0.0012;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104668144 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6644;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104668164 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8495;ERATE=0.0002;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104668182 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0089;AVGPOST=0.9975;RSQ=0.8916;ERATE=0.0004;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104668266 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0067;AVGPOST=0.9994;RSQ=0.9594;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104668270 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7411;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104668281 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.861;LDAF=0.0215;AVGPOST=0.9947;RSQ=0.9133;ERATE=0.0005;THETA=0.0033;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 104668313 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0066;AVGPOST=0.9996;RSQ=0.9698;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104668608 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0111;AVGPOST=0.9998;RSQ=0.9920;ERATE=0.0002;THETA=0.0008;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104668666 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9067;ERATE=0.0002;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104668692 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0025;AVGPOST=0.9983;RSQ=0.7098;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104668857 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.828;LDAF=0.0068;AVGPOST=0.9989;RSQ=0.9334;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104668858 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.580;LDAF=0.0058;AVGPOST=0.9931;RSQ=0.5472;ERATE=0.0011;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104668938 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.889;LDAF=0.0128;AVGPOST=0.9954;RSQ=0.8590;ERATE=0.0003;THETA=0.0007;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104669001 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.753;LDAF=0.0092;AVGPOST=0.9957;RSQ=0.8129;ERATE=0.0006;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104669219 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9235;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104669274 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.738;LDAF=0.0027;AVGPOST=0.9975;RSQ=0.5766;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104669409 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0111;AVGPOST=0.9998;RSQ=0.9920;ERATE=0.0002;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104669458 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0607;AVGPOST=0.9982;RSQ=0.9877;ERATE=0.0003;THETA=0.0007;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 104669503 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.9510;AVGPOST=0.9995;RSQ=0.9958;ERATE=0.0002;THETA=0.0003;AC=2077;AN=2184 GT:DS:GL:BD 0.95100731 1 1 104669515 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.802;LDAF=0.0062;AVGPOST=0.9960;RSQ=0.7743;ERATE=0.0003;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104669542 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9598;ERATE=0.0002;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104669570 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.7013;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104669598 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0117;AVGPOST=0.9991;RSQ=0.9638;ERATE=0.0003;THETA=0.0010;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104669740 . CCTCT C 418 PASS INDEL;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0047;AVGPOST=0.9995;RSQ=0.9495;ERATE=0.0004;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104669742 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0256;AVGPOST=0.9961;RSQ=0.9481;ERATE=0.0002;THETA=0.0012;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 104669892 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.8138;AVGPOST=0.9970;RSQ=0.9921;ERATE=0.0007;THETA=0.0008;AC=1779;AN=2184 GT:DS:GL:BD 0.81456041 1 1 104670041 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0233;AVGPOST=0.9896;RSQ=0.8140;ERATE=0.0013;THETA=0.0007;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 104670248 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.318;LDAF=0.0053;AVGPOST=0.9952;RSQ=0.6127;ERATE=0.0007;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104670302 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0002;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104670553 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5788;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104670617 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7335;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104670749 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.730;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104670763 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.9587;AVGPOST=0.9996;RSQ=0.9957;ERATE=0.0003;THETA=0.0004;AC=2094;AN=2184 GT:DS:GL:BD 0.95879120 1 1 104670876 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0002;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104670978 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8025;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104671046 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0035;AVGPOST=0.9992;RSQ=0.9124;ERATE=0.0002;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104671072 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7995;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104671085 . CAG C 1598 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0127;AVGPOST=0.9994;RSQ=0.9789;ERATE=0.0003;THETA=0.0009;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104671161 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.9270;ERATE=0.0002;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104671662 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0005;AVGPOST=0.9994;RSQ=0.5245;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104671714 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.5044;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104671754 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0052;AVGPOST=0.9995;RSQ=0.9499;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104671757 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.961;LDAF=0.0147;AVGPOST=0.9993;RSQ=0.9790;ERATE=0.0003;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104671858 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0027;AVGPOST=0.9994;RSQ=0.8986;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104671859 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.871;LDAF=0.0077;AVGPOST=0.9982;RSQ=0.9140;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104671861 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0111;AVGPOST=0.9995;RSQ=0.9785;ERATE=0.0004;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104671864 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104671902 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.477;LDAF=0.0060;AVGPOST=0.9919;RSQ=0.4843;ERATE=0.0019;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104671947 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104671990 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0035;AVGPOST=0.9975;RSQ=0.7356;ERATE=0.0005;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104672015 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104672207 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104672421 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0018;AVGPOST=1.0000;RSQ=0.9879;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104672527 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104672561 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104672584 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104672618 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2074;AVGPOST=0.9996;RSQ=0.9989;ERATE=0.0003;THETA=0.0003;AC=452;AN=2184 GT:DS:GL:BD 0.20695971 0 1 104672830 . T TA 342 PASS INDEL;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0027;AVGPOST=0.9974;RSQ=0.6048;ERATE=0.0008;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104673143 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9858;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104673171 . ACTGT A 99 PASS INDEL;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5655;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104673286 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104673329 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.842;LDAF=0.0050;AVGPOST=0.9987;RSQ=0.8968;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104673377 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.687;LDAF=0.0031;AVGPOST=0.9974;RSQ=0.6739;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104673391 . GTT G 679 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9993;RSQ=0.9379;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104673433 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7444;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104673469 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.4014;AVGPOST=0.9978;RSQ=0.9970;ERATE=0.0003;THETA=0.0004;AC=877;AN=2184 GT:DS:GL:BD 0.40155679 0 1 104673491 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0015;AVGPOST=0.9992;RSQ=0.7524;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104673494 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.6370;AVGPOST=0.9984;RSQ=0.9971;ERATE=0.0007;THETA=0.0003;AC=1392;AN=2184 GT:DS:GL:BD 0.63736266 1 1 104673720 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104674061 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104674350 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104674424 . TAGAA T 97 PASS INDEL;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5466;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104674669 . AC A 159 PASS INDEL;BAVGPOST=0.998;BRSQ=0.670;LDAF=0.0044;AVGPOST=0.9941;RSQ=0.4971;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104674745 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4222;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104674806 . T TC 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5389;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104674890 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=0.9991;RSQ=0.9174;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104674944 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.717;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104674977 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.8331;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104675091 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9490;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104675154 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104675289 . GAA G 48 PASS INDEL;BAVGPOST=0.999;BRSQ=0.606;LDAF=0.0025;AVGPOST=0.9975;RSQ=0.5413;ERATE=0.0011;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104675310 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9682;ERATE=0.0009;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104675414 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0018;AVGPOST=0.9996;RSQ=0.9041;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104675417 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104675663 . T TG 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4728;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104675786 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0064;AVGPOST=0.9999;RSQ=0.9897;ERATE=0.0016;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104675798 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104675907 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104675908 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6367;AVGPOST=0.9997;RSQ=0.9994;ERATE=0.0003;THETA=0.0006;AC=1391;AN=2184 GT:DS:GL:BD 0.63690478 1 1 104675912 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6343;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104675936 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0047;AVGPOST=0.9991;RSQ=0.9353;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104675980 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9995;RSQ=0.9441;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104676080 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104676081 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7401;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104676121 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0172;AVGPOST=0.9994;RSQ=0.9872;ERATE=0.0006;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104676155 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2078;AVGPOST=0.9990;RSQ=0.9976;ERATE=0.0003;THETA=0.0021;AC=453;AN=2184 GT:DS:GL:BD 0.20741758 0 1 104676190 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.737;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5464;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104676667 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8037;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104676699 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104676702 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8627;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104676761 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3996;AVGPOST=0.9972;RSQ=0.9955;ERATE=0.0007;THETA=0.0003;AC=874;AN=2184 GT:DS:GL:BD 0.40018314 0 1 104676806 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7457;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104676835 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.671;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8474;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104676938 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104677007 . A ATT 303 PASS INDEL;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0024;AVGPOST=0.9983;RSQ=0.7478;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104677069 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104677114 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104677284 . T TG 313 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104677348 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6742;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104677383 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.810;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8472;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104677444 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104677455 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0598;AVGPOST=0.9987;RSQ=0.9934;ERATE=0.0003;THETA=0.0013;AC=131;AN=2184 GT:DS:GL:BD 0.05998169 0 1 104677562 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9882;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104677645 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0089;AVGPOST=0.9987;RSQ=0.9402;ERATE=0.0004;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104677772 . ATAAAAT A 107 PASS INDEL;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6220;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104677811 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0395;AVGPOST=0.9995;RSQ=0.9948;ERATE=0.0004;THETA=0.0021;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 104677825 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.844;LDAF=0.0058;AVGPOST=0.9992;RSQ=0.9475;ERATE=0.0003;THETA=0.0012;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104677863 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104677890 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6258;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104677896 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104677942 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9535;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104677965 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104678191 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0041;AVGPOST=1.0000;RSQ=0.9947;ERATE=0.0003;THETA=0.0029;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104678302 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0398;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0013;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 104678432 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104678480 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0092;AVGPOST=1.0000;RSQ=0.9976;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104678599 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0092;AVGPOST=1.0000;RSQ=0.9976;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104678675 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104678676 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0485;AVGPOST=0.9999;RSQ=0.9992;ERATE=0.0003;THETA=0.0014;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 104678686 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.545;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6434;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104678763 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.889;LDAF=0.0565;AVGPOST=0.9764;RSQ=0.8340;ERATE=0.0078;THETA=0.0010;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 104678854 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0129;AVGPOST=0.9995;RSQ=0.9803;ERATE=0.0004;THETA=0.0011;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104678945 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0396;AVGPOST=0.9995;RSQ=0.9941;ERATE=0.0003;THETA=0.0009;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 104678946 . T TAC 252 PASS INDEL;BAVGPOST=0.999;BRSQ=0.799;LDAF=0.0059;AVGPOST=0.9928;RSQ=0.5132;ERATE=0.0016;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104679016 . G GT 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0023;AVGPOST=0.9973;RSQ=0.5201;ERATE=0.0005;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104679082 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0125;AVGPOST=0.9991;RSQ=0.9683;ERATE=0.0003;THETA=0.0007;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104679216 . G GCA 362 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9383;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104679245 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.647;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.4656;ERATE=0.0006;THETA=0.0073;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104679318 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.772;LDAF=0.0030;AVGPOST=0.9968;RSQ=0.6382;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104679409 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5587;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104679419 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0086;AVGPOST=0.9973;RSQ=0.8788;ERATE=0.0004;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104679423 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5973;ERATE=0.0003;THETA=0.0019;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104679434 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104679541 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8935;ERATE=0.0003;THETA=0.0034;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104679560 rs112923904 CAG C 185 PASS INDEL;BAVGPOST=0.999;BRSQ=0.737;LDAF=0.0036;AVGPOST=0.9993;RSQ=0.9056;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104679578 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0029;AVGPOST=0.9991;RSQ=0.8678;ERATE=0.0003;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104679627 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5149;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104679734 . TAC T 332 PASS INDEL;BAVGPOST=0.977;BRSQ=0.680;LDAF=0.0561;AVGPOST=0.9410;RSQ=0.5390;ERATE=0.0262;THETA=0.0006;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 104679817 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.859;LDAF=0.0103;AVGPOST=0.9988;RSQ=0.9449;ERATE=0.0006;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104679846 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0097;AVGPOST=0.9995;RSQ=0.9783;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104680077 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0097;AVGPOST=0.9995;RSQ=0.9756;ERATE=0.0003;THETA=0.0010;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104680082 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8216;ERATE=0.0003;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104680121 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.1340;AVGPOST=0.9989;RSQ=0.9970;ERATE=0.0005;THETA=0.0005;AC=294;AN=2184 GT:DS:GL:BD 0.13461539 0 1 104680156 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0395;AVGPOST=0.9991;RSQ=0.9898;ERATE=0.0003;THETA=0.0004;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 104680167 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9696;ERATE=0.0003;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104680243 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0038;AVGPOST=0.9998;RSQ=0.9716;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104680317 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7777;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104680339 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0049;AVGPOST=0.9970;RSQ=0.7802;ERATE=0.0005;THETA=0.0045;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104680340 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0017;AVGPOST=0.9980;RSQ=0.4560;ERATE=0.0006;THETA=0.0029;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104680410 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.845;LDAF=0.0121;AVGPOST=0.9985;RSQ=0.9426;ERATE=0.0004;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104680444 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.664;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6039;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104680461 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0106;AVGPOST=0.9962;RSQ=0.8657;ERATE=0.0006;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104680558 . C CA 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.739;LDAF=0.0032;AVGPOST=0.9961;RSQ=0.4683;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104680570 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.607;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.8018;ERATE=0.0004;THETA=0.0020;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104680602 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0096;AVGPOST=0.9997;RSQ=0.9862;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104680603 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0039;AVGPOST=0.9993;RSQ=0.9168;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104680606 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0114;AVGPOST=0.9997;RSQ=0.9883;ERATE=0.0003;THETA=0.0011;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104680619 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0045;AVGPOST=0.9977;RSQ=0.8164;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104680650 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104680660 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7320;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104680687 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.741;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5763;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104680739 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0115;AVGPOST=0.9997;RSQ=0.9900;ERATE=0.0003;THETA=0.0008;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104680818 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5953;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104680857 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104680889 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.2966;AVGPOST=0.9955;RSQ=0.9915;ERATE=0.0007;THETA=0.0011;AC=649;AN=2184 GT:DS:GL:BD 0.29716116 0 1 104680955 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.989;LDAF=0.3001;AVGPOST=0.9953;RSQ=0.9915;ERATE=0.0003;THETA=0.0006;AC=658;AN=2184 GT:DS:GL:BD 0.30128205 0 1 104681089 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0858;AVGPOST=0.9973;RSQ=0.9866;ERATE=0.0006;THETA=0.0064;AC=186;AN=2184 GT:DS:GL:BD 0.08516484 0 1 104681101 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5970;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104681169 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6384;ERATE=0.0004;THETA=0.0076;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104681302 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.957;LDAF=0.0066;AVGPOST=0.9994;RSQ=0.9549;ERATE=0.0005;THETA=0.0014;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104681303 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0039;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104681361 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0048;AVGPOST=0.9994;RSQ=0.9376;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104681520 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.1445;AVGPOST=0.9981;RSQ=0.9951;ERATE=0.0005;THETA=0.0005;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 104681605 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.1034;AVGPOST=0.9989;RSQ=0.9958;ERATE=0.0003;THETA=0.0021;AC=225;AN=2184 GT:DS:GL:BD 0.10302198 0 1 104681613 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1045;AVGPOST=0.9990;RSQ=0.9963;ERATE=0.0003;THETA=0.0003;AC=227;AN=2184 GT:DS:GL:BD 0.10393773 0 1 104681679 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.632;LDAF=0.0027;AVGPOST=0.9972;RSQ=0.5551;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104681723 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104681730 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0414;AVGPOST=0.9995;RSQ=0.9955;ERATE=0.0003;THETA=0.0003;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 104681866 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.863;LDAF=0.0089;AVGPOST=0.9949;RSQ=0.8038;ERATE=0.0004;THETA=0.0024;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104681895 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0048;AVGPOST=0.9996;RSQ=0.9641;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104681902 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8141;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104681931 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2899;AVGPOST=0.9983;RSQ=0.9963;ERATE=0.0005;THETA=0.0002;AC=634;AN=2184 GT:DS:GL:BD 0.29029304 0 1 104681940 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0115;AVGPOST=0.9998;RSQ=0.9917;ERATE=0.0003;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104681941 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.6237;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104681994 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1072;AVGPOST=0.9994;RSQ=0.9975;ERATE=0.0003;THETA=0.0003;AC=233;AN=2184 GT:DS:GL:BD 0.10668498 0 1 104681998 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104682002 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9471;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104682016 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0057;AVGPOST=0.9996;RSQ=0.9694;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104682033 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0037;AVGPOST=0.9993;RSQ=0.9160;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104682073 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6441;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104682119 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0452;AVGPOST=0.9999;RSQ=0.9992;ERATE=0.0003;THETA=0.0003;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 104682137 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0074;AVGPOST=0.9985;RSQ=0.9305;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104682168 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9144;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104682187 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6402;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104682224 . TC T 578 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0050;AVGPOST=0.9991;RSQ=0.9175;ERATE=0.0003;THETA=0.0023;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104682275 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.968;LDAF=0.0330;AVGPOST=0.9980;RSQ=0.9778;ERATE=0.0004;THETA=0.0006;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 104682276 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0024;AVGPOST=0.9987;RSQ=0.7892;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104682294 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104682297 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1071;AVGPOST=0.9996;RSQ=0.9985;ERATE=0.0003;THETA=0.0004;AC=233;AN=2184 GT:DS:GL:BD 0.10668498 0 1 104682309 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0027;AVGPOST=0.9973;RSQ=0.6464;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104682378 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.708;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.5554;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104682449 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0073;AVGPOST=0.9991;RSQ=0.9429;ERATE=0.0004;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104682467 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9996;RSQ=0.9860;ERATE=0.0004;THETA=0.0009;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104682523 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0107;AVGPOST=0.9995;RSQ=0.9793;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104682524 . AC A 46 PASS INDEL;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7865;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104682533 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.972;LDAF=0.1282;AVGPOST=0.9880;RSQ=0.9589;ERATE=0.0016;THETA=0.0005;AC=280;AN=2184 GT:DS:GL:BD 0.12820514 0 1 104682621 . AT A 67 PASS INDEL;BAVGPOST=0.979;BRSQ=0.426;LDAF=0.0426;AVGPOST=0.9453;RSQ=0.4717;ERATE=0.0090;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 104682694 . CAA C 388 PASS INDEL;BAVGPOST=0.998;BRSQ=0.813;LDAF=0.0058;AVGPOST=0.9966;RSQ=0.7800;ERATE=0.0006;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104682758 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9658;ERATE=0.0003;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104682766 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.721;LDAF=0.0042;AVGPOST=0.9972;RSQ=0.7637;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104682947 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.1198;AVGPOST=0.9984;RSQ=0.9940;ERATE=0.0003;THETA=0.0006;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 104683023 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9501;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104683058 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1334;AVGPOST=0.9987;RSQ=0.9953;ERATE=0.0003;THETA=0.0002;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 104683085 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1317;AVGPOST=0.9983;RSQ=0.9938;ERATE=0.0004;THETA=0.0004;AC=288;AN=2184 GT:DS:GL:BD 0.13186814 0 1 104683107 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.912;LDAF=0.0076;AVGPOST=0.9984;RSQ=0.9194;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104683131 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.747;LDAF=0.0029;AVGPOST=0.9963;RSQ=0.5013;ERATE=0.0005;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104683230 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0115;AVGPOST=0.9999;RSQ=0.9942;ERATE=0.0003;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104683268 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1320;AVGPOST=0.9978;RSQ=0.9924;ERATE=0.0008;THETA=0.0006;AC=290;AN=2184 GT:DS:GL:BD 0.13278389 0 1 104683276 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9647;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104683391 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.626;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.6012;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104683540 rs3071892 TTAAC T 16427 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1348;AVGPOST=0.9977;RSQ=0.9916;ERATE=0.0005;THETA=0.0009;AC=294;AN=2184 GT:DS:GL:BD 0.13461539 0 1 104683753 . G GA 1114 PASS INDEL;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0116;AVGPOST=0.9994;RSQ=0.9753;ERATE=0.0004;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104683770 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1318;AVGPOST=0.9994;RSQ=0.9975;ERATE=0.0005;THETA=0.0004;AC=288;AN=2184 GT:DS:GL:BD 0.13186814 0 1 104684200 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.910;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7897;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104684239 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0016;AVGPOST=0.9983;RSQ=0.6417;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104684243 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1208;AVGPOST=0.9989;RSQ=0.9955;ERATE=0.0003;THETA=0.0004;AC=264;AN=2184 GT:DS:GL:BD 0.12087912 0 1 104684285 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6828;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104684292 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0078;AVGPOST=0.9975;RSQ=0.8736;ERATE=0.0007;THETA=0.0019;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104684507 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.984;LDAF=0.1423;AVGPOST=0.9926;RSQ=0.9737;ERATE=0.0003;THETA=0.0010;AC=309;AN=2184 GT:DS:GL:BD 0.14148352 0 1 104684568 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0052;AVGPOST=0.9997;RSQ=0.9708;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104684592 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0068;AVGPOST=0.9999;RSQ=0.9939;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104684605 . CTA C 5276 PASS INDEL;BAVGPOST=0.980;BRSQ=0.955;LDAF=0.3041;AVGPOST=0.9822;RSQ=0.9674;ERATE=0.0017;THETA=0.0004;AC=673;AN=2184 GT:DS:GL:BD 0.30815017 0 1 104684622 rs113988588 TATA T 31492 PASS INDEL;BAVGPOST=0.991;BRSQ=0.982;LDAF=0.3103;AVGPOST=0.9898;RSQ=0.9814;ERATE=0.0010;THETA=0.0030;AC=677;AN=2184 GT:DS:GL:BD 0.30998167 0 1 104684623 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.816;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.7926;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104684721 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.907;LDAF=0.0096;AVGPOST=0.9989;RSQ=0.9451;ERATE=0.0003;THETA=0.0007;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104684802 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0053;AVGPOST=0.9994;RSQ=0.9490;ERATE=0.0003;THETA=0.0015;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104684846 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1316;AVGPOST=0.9999;RSQ=0.9994;ERATE=0.0003;THETA=0.0007;AC=288;AN=2184 GT:DS:GL:BD 0.13186814 0 1 104685031 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1317;AVGPOST=0.9987;RSQ=0.9950;ERATE=0.0005;THETA=0.0002;AC=288;AN=2184 GT:DS:GL:BD 0.13186814 0 1 104685124 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9556;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104685188 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.842;LDAF=0.0097;AVGPOST=0.9948;RSQ=0.8154;ERATE=0.0005;THETA=0.0009;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104685219 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.617;LDAF=0.0068;AVGPOST=0.9954;RSQ=0.7227;ERATE=0.0012;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104685229 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3107;AVGPOST=0.9968;RSQ=0.9936;ERATE=0.0006;THETA=0.0004;AC=679;AN=2184 GT:DS:GL:BD 0.31089744 0 1 104685312 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1320;AVGPOST=0.9987;RSQ=0.9952;ERATE=0.0006;THETA=0.0003;AC=288;AN=2184 GT:DS:GL:BD 0.13186814 0 1 104685367 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.1319;AVGPOST=0.9991;RSQ=0.9964;ERATE=0.0004;THETA=0.0003;AC=288;AN=2184 GT:DS:GL:BD 0.13186814 0 1 104685375 . A AG 7580 PASS INDEL;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.1321;AVGPOST=0.9974;RSQ=0.9908;ERATE=0.0007;THETA=0.0004;AC=288;AN=2184 GT:DS:GL:BD 0.13186814 0 1 104685393 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1315;AVGPOST=0.9983;RSQ=0.9938;ERATE=0.0007;THETA=0.0003;AC=288;AN=2184 GT:DS:GL:BD 0.13186814 0 1 104685430 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6642;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104685469 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8116;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104685482 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0033;AVGPOST=0.9992;RSQ=0.8938;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104685632 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6872;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104685650 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.7060;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104685678 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.5178;AVGPOST=0.9944;RSQ=0.9922;ERATE=0.0004;THETA=0.0006;AC=1131;AN=2184 GT:DS:GL:BD 0.51785713 1 1 104685774 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1316;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=288;AN=2184 GT:DS:GL:BD 0.13186814 0 1 104685793 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0051;AVGPOST=0.9983;RSQ=0.8606;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104685807 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7422;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104685936 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6094;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104685941 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5357;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104685987 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.992;LDAF=0.5173;AVGPOST=0.9928;RSQ=0.9896;ERATE=0.0005;THETA=0.0005;AC=1129;AN=2184 GT:DS:GL:BD 0.51694137 1 1 104686076 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0112;AVGPOST=0.9987;RSQ=0.9582;ERATE=0.0004;THETA=0.0015;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104686101 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5864;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104686107 rs35954812 ATTT A 16326 PASS INDEL;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1318;AVGPOST=0.9993;RSQ=0.9972;ERATE=0.0004;THETA=0.0007;AC=288;AN=2184 GT:DS:GL:BD 0.13186814 0 1 104686111 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.776;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6288;ERATE=0.0003;THETA=0.0055;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104686211 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5592;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104686265 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9359;ERATE=0.0003;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104686298 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7882;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104686315 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8802;ERATE=0.0003;THETA=0.0041;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104686349 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1323;AVGPOST=0.9991;RSQ=0.9966;ERATE=0.0004;THETA=0.0018;AC=289;AN=2184 GT:DS:GL:BD 0.13232601 0 1 104686489 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5493;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104686655 . C CG 25 PASS INDEL;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5646;ERATE=0.0003;THETA=0.0068;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104686670 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7089;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104686722 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.722;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6622;ERATE=0.0004;THETA=0.0066;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104686867 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9207;ERATE=0.0004;THETA=0.0100;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104687016 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0032;AVGPOST=0.9984;RSQ=0.8015;ERATE=0.0003;THETA=0.0063;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104687102 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.943;LDAF=0.0080;AVGPOST=0.9989;RSQ=0.9448;ERATE=0.0003;THETA=0.0014;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104687132 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.5211;ERATE=0.0003;THETA=0.0008;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104687134 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8446;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104687167 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.974;LDAF=0.1871;AVGPOST=0.9904;RSQ=0.9775;ERATE=0.0036;THETA=0.0013;AC=406;AN=2184 GT:DS:GL:BD 0.18589744 0 1 104687176 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6272;ERATE=0.0004;THETA=0.0226;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104687190 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8366;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104687246 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104687419 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104687427 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0054;AVGPOST=0.9990;RSQ=0.9392;ERATE=0.0003;THETA=0.0011;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104687537 . AG A 31 PASS INDEL;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6732;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104687540 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6969;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104687624 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104687704 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104687912 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8704;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104687966 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.723;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5869;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104688067 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5591;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104688081 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104688125 . TC T 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104688151 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104688342 . AT A 45 PASS INDEL;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6856;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104688432 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6670;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104688449 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1602;AVGPOST=0.9990;RSQ=0.9981;ERATE=0.0003;THETA=0.0005;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 104688463 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104688480 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0004;AVGPOST=0.9995;RSQ=0.5372;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104688489 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7159;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104688588 . A AG 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4659;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104688593 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0126;AVGPOST=0.9986;RSQ=0.9578;ERATE=0.0003;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104688635 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9524;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104688863 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7394;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104688977 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0018;AVGPOST=0.9978;RSQ=0.5534;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104689175 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9495;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104689241 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.822;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8441;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104689369 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.8974;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104689434 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2305;AVGPOST=0.9974;RSQ=0.9943;ERATE=0.0006;THETA=0.0002;AC=502;AN=2184 GT:DS:GL:BD 0.22985348 0 1 104689520 . CCAG C 787 PASS INDEL;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7156;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104689558 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9107;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104689590 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8757;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104689602 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0013;AVGPOST=0.9997;RSQ=0.9118;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104689635 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104689702 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.2300;AVGPOST=0.9987;RSQ=0.9971;ERATE=0.0004;THETA=0.0005;AC=501;AN=2184 GT:DS:GL:BD 0.22939560 0 1 104689750 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0035;AVGPOST=0.9981;RSQ=0.7849;ERATE=0.0003;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104689795 . CAACTGCA C 428 PASS INDEL;BAVGPOST=0.998;BRSQ=0.628;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7383;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104689969 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0030;AVGPOST=0.9992;RSQ=0.8754;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104690112 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104690268 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104690298 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104690498 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7363;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104690608 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7729;ERATE=0.0006;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104690621 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0032;AVGPOST=0.9997;RSQ=0.9701;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104690647 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9193;ERATE=0.0005;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104690653 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1604;AVGPOST=0.9997;RSQ=0.9993;ERATE=0.0003;THETA=0.0002;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 104690755 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6451;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104690758 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0115;AVGPOST=0.9996;RSQ=0.9857;ERATE=0.0003;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104690818 rs71839577 CTG C 212 PASS INDEL;BAVGPOST=0.976;BRSQ=0.646;LDAF=0.0641;AVGPOST=0.9318;RSQ=0.5450;ERATE=0.0156;THETA=0.0003;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 104690848 . T TGTGC 2519 PASS INDEL;BAVGPOST=0.978;BRSQ=0.817;LDAF=0.0742;AVGPOST=0.9506;RSQ=0.7293;ERATE=0.0107;THETA=0.0004;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 104690869 rs57269476 T TGC 4280 PASS INDEL;BAVGPOST=0.979;BRSQ=0.828;LDAF=0.0534;AVGPOST=0.9717;RSQ=0.8031;ERATE=0.0033;THETA=0.0004;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 104690871 . T TGC 7464 PASS INDEL;BAVGPOST=0.951;BRSQ=0.861;LDAF=0.1582;AVGPOST=0.9358;RSQ=0.8487;ERATE=0.0084;THETA=0.0005;AC=333;AN=2184 GT:DS:GL:BD 0.15247253 0 1 104690873 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.902;LDAF=0.1288;AVGPOST=0.9590;RSQ=0.8816;ERATE=0.0065;THETA=0.0003;AC=272;AN=2184 GT:DS:GL:BD 0.12454212 0 1 104690875 rs72162008 GTGTT G 25409 PASS INDEL;BAVGPOST=0.959;BRSQ=0.921;LDAF=0.3552;AVGPOST=0.9151;RSQ=0.8659;ERATE=0.0276;THETA=0.0004;AC=765;AN=2184 GT:DS:GL:BD 0.35027471 0 1 104690898 rs72367592 CTTAG C 29003 PASS INDEL;BAVGPOST=0.993;BRSQ=0.984;LDAF=0.2211;AVGPOST=0.9867;RSQ=0.9709;ERATE=0.0039;THETA=0.0008;AC=479;AN=2184 GT:DS:GL:BD 0.21932234 0 1 104690916 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2304;AVGPOST=0.9989;RSQ=0.9973;ERATE=0.0004;THETA=0.0004;AC=503;AN=2184 GT:DS:GL:BD 0.23031135 0 1 104691070 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5033;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104691158 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4296;ERATE=0.0005;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104691291 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2147;AVGPOST=0.9971;RSQ=0.9932;ERATE=0.0006;THETA=0.0003;AC=466;AN=2184 GT:DS:GL:BD 0.21336997 0 1 104691360 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0037;AVGPOST=0.9982;RSQ=0.8036;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104691697 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0027;AVGPOST=0.9982;RSQ=0.7034;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104691735 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6651;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104691802 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9382;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104691818 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.2202;AVGPOST=0.9972;RSQ=0.9935;ERATE=0.0006;THETA=0.0005;AC=480;AN=2184 GT:DS:GL:BD 0.21978022 0 1 104691901 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9245;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104691922 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2194;AVGPOST=0.9994;RSQ=0.9985;ERATE=0.0003;THETA=0.0005;AC=478;AN=2184 GT:DS:GL:BD 0.21886447 0 1 104691972 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0093;AVGPOST=0.9995;RSQ=0.9763;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104692001 . CT C 93 PASS INDEL;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0024;AVGPOST=0.9966;RSQ=0.5030;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104692016 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0116;AVGPOST=0.9996;RSQ=0.9848;ERATE=0.0003;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104692078 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5643;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104692129 rs35228889 CG C 19007 PASS INDEL;BAVGPOST=0.993;BRSQ=0.984;LDAF=0.2201;AVGPOST=0.9951;RSQ=0.9895;ERATE=0.0010;THETA=0.0006;AC=478;AN=2184 GT:DS:GL:BD 0.21886447 0 1 104692177 . G GC 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5771;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104692410 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0045;AVGPOST=0.9969;RSQ=0.7431;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104692413 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1635;AVGPOST=0.9987;RSQ=0.9975;ERATE=0.0003;THETA=0.0008;AC=357;AN=2184 GT:DS:GL:BD 0.16346154 0 1 104692441 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0017;AVGPOST=0.9986;RSQ=0.6673;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104692498 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9990;RSQ=0.9473;ERATE=0.0002;THETA=0.0036;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104692615 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6678;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104692724 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5535;ERATE=0.0003;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104692741 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.906;LDAF=0.0112;AVGPOST=0.9971;RSQ=0.9029;ERATE=0.0002;THETA=0.0144;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104692814 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0025;AVGPOST=0.9994;RSQ=0.9208;ERATE=0.0007;THETA=0.0040;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104692835 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0331;AVGPOST=0.9985;RSQ=0.9796;ERATE=0.0003;THETA=0.0003;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 104692913 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0110;AVGPOST=0.9996;RSQ=0.9821;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104692975 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6714;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104693004 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1965;AVGPOST=0.9967;RSQ=0.9920;ERATE=0.0006;THETA=0.0005;AC=428;AN=2184 GT:DS:GL:BD 0.19597070 0 1 104693019 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9904;ERATE=0.0002;THETA=0.0035;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104693043 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0085;AVGPOST=0.9995;RSQ=0.9715;ERATE=0.0002;THETA=0.0019;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104693087 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6436;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104693112 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.684;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7511;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104693146 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6719;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104693315 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0097;AVGPOST=0.9999;RSQ=0.9931;ERATE=0.0002;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104693362 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104693466 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8377;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104693506 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7887;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104693534 . G GT 21 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104693612 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6019;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104693613 . T TC 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0025;AVGPOST=0.9972;RSQ=0.5957;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104693633 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.932;LDAF=0.0299;AVGPOST=0.9958;RSQ=0.9430;ERATE=0.0002;THETA=0.0003;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 104693687 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7702;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104693702 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0399;AVGPOST=0.9998;RSQ=0.9973;ERATE=0.0003;THETA=0.0003;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 104693715 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5647;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104693917 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0401;AVGPOST=0.9993;RSQ=0.9926;ERATE=0.0004;THETA=0.0006;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 104693964 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2879;AVGPOST=0.9969;RSQ=0.9946;ERATE=0.0005;THETA=0.0003;AC=626;AN=2184 GT:DS:GL:BD 0.28663003 0 1 104694082 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.713;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6343;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104694157 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6359;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104694161 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0002;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104694163 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104694172 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6037;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104694222 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8408;ERATE=0.0002;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104694231 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9995;RSQ=0.9686;ERATE=0.0004;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104694260 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104694352 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104694360 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6088;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104694369 . ATCC A 16685 PASS INDEL;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0996;AVGPOST=0.9991;RSQ=0.9959;ERATE=0.0003;THETA=0.0002;AC=218;AN=2184 GT:DS:GL:BD 0.09981685 0 1 104694471 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0724;AVGPOST=0.9993;RSQ=0.9954;ERATE=0.0003;THETA=0.0004;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 104694620 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104694715 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.7148;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104694802 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0031;AVGPOST=0.9985;RSQ=0.7947;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104694808 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104694941 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.767;LDAF=0.0032;AVGPOST=0.9980;RSQ=0.7592;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104694960 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0042;AVGPOST=0.9985;RSQ=0.8614;ERATE=0.0004;THETA=0.0001;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104694974 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6395;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104695014 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0023;AVGPOST=0.9972;RSQ=0.5656;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104695116 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.7233;AVGPOST=0.9965;RSQ=0.9943;ERATE=0.0004;THETA=0.0004;AC=1576;AN=2184 GT:DS:GL:BD 0.72161174 1 1 104695222 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2501;AVGPOST=0.9981;RSQ=0.9960;ERATE=0.0004;THETA=0.0005;AC=546;AN=2184 GT:DS:GL:BD 0.25000000 0 1 104695311 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.8331;AVGPOST=0.9938;RSQ=0.9829;ERATE=0.0009;THETA=0.0001;AC=1821;AN=2184 GT:DS:GL:BD 0.83379120 1 1 104695318 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0032;AVGPOST=0.9966;RSQ=0.5852;ERATE=0.0003;THETA=0.0001;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104695326 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.872;LDAF=0.0165;AVGPOST=0.9939;RSQ=0.8636;ERATE=0.0004;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 104695484 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5392;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104695634 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1133;AVGPOST=0.9983;RSQ=0.9937;ERATE=0.0005;THETA=0.0002;AC=248;AN=2184 GT:DS:GL:BD 0.11355311 0 1 104695805 . TAG T 20 PASS INDEL;BAVGPOST=0.978;BRSQ=0.085;LDAF=0.0103;AVGPOST=0.9883;RSQ=0.5304;ERATE=0.0008;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104695847 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104695946 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7233;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104696124 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.1882;AVGPOST=0.9976;RSQ=0.9941;ERATE=0.0004;THETA=0.0001;AC=411;AN=2184 GT:DS:GL:BD 0.18818681 0 1 104696251 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7986;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104696386 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.5915;ERATE=0.0004;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104696434 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6899;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104696504 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7252;ERATE=0.0003;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104696509 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104696586 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6701;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104696703 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5423;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104696706 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.8088;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104696737 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9731;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104696741 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6039;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104696754 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6830;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104696766 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2481;AVGPOST=0.9981;RSQ=0.9962;ERATE=0.0003;THETA=0.0002;AC=542;AN=2184 GT:DS:GL:BD 0.24816850 0 1 104697026 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104697170 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.724;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104697191 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8693;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104697300 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.6492;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104697309 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0020;AVGPOST=0.9990;RSQ=0.7952;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104697361 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7917;ERATE=0.0007;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104697462 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0838;AVGPOST=0.9985;RSQ=0.9929;ERATE=0.0004;THETA=0.0008;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 104697563 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1698;AVGPOST=0.9980;RSQ=0.9948;ERATE=0.0003;THETA=0.0003;AC=372;AN=2184 GT:DS:GL:BD 0.17032968 0 1 104697564 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104697595 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0512;AVGPOST=0.9999;RSQ=0.9992;ERATE=0.0003;THETA=0.0005;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 104697645 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0071;AVGPOST=0.9994;RSQ=0.9624;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104697705 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.976;LDAF=0.0222;AVGPOST=0.9992;RSQ=0.9841;ERATE=0.0003;THETA=0.0003;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 104697732 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6644;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104697795 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4110;AVGPOST=0.9969;RSQ=0.9946;ERATE=0.0008;THETA=0.0005;AC=900;AN=2184 GT:DS:GL:BD 0.41208792 0 1 104697855 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0144;AVGPOST=0.9987;RSQ=0.9666;ERATE=0.0003;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104697900 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0074;AVGPOST=0.9975;RSQ=0.8727;ERATE=0.0003;THETA=0.0010;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104698002 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4127;AVGPOST=0.9960;RSQ=0.9930;ERATE=0.0010;THETA=0.0004;AC=902;AN=2184 GT:DS:GL:BD 0.41300365 0 1 104698110 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0036;AVGPOST=0.9977;RSQ=0.7760;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104698127 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0302;AVGPOST=0.9995;RSQ=0.9938;ERATE=0.0003;THETA=0.0002;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 104698156 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3289;AVGPOST=0.9982;RSQ=0.9967;ERATE=0.0006;THETA=0.0002;AC=720;AN=2184 GT:DS:GL:BD 0.32967034 0 1 104698261 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2739;AVGPOST=0.9932;RSQ=0.9863;ERATE=0.0015;THETA=0.0003;AC=597;AN=2184 GT:DS:GL:BD 0.27335164 0 1 104698368 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.4099;AVGPOST=0.9979;RSQ=0.9964;ERATE=0.0004;THETA=0.0003;AC=898;AN=2184 GT:DS:GL:BD 0.41117215 0 1 104698385 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0404;AVGPOST=0.9979;RSQ=0.9803;ERATE=0.0005;THETA=0.0003;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 104698462 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1698;AVGPOST=0.9972;RSQ=0.9920;ERATE=0.0004;THETA=0.0002;AC=372;AN=2184 GT:DS:GL:BD 0.17032968 0 1 104698481 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.976;LDAF=0.0224;AVGPOST=0.9987;RSQ=0.9731;ERATE=0.0005;THETA=0.0002;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 104698488 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.689;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7928;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104698666 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0006;AVGPOST=0.9988;RSQ=0.2802;ERATE=0.0004;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104698709 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0116;AVGPOST=0.9997;RSQ=0.9885;ERATE=0.0003;THETA=0.0002;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104698722 . TAAG T 31 PASS INDEL;BAVGPOST=0.999;BRSQ=0.758;LDAF=0.0050;AVGPOST=0.9962;RSQ=0.6673;ERATE=0.0012;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104698867 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.911;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9465;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104698949 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6065;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104699000 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104699001 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104699097 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0047;AVGPOST=0.9996;RSQ=0.9636;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104699173 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2074;AVGPOST=0.9998;RSQ=0.9994;ERATE=0.0003;THETA=0.0003;AC=452;AN=2184 GT:DS:GL:BD 0.20695971 0 1 104699402 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0133;AVGPOST=1.0000;RSQ=0.9983;ERATE=0.0003;THETA=0.0002;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104699435 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0828;AVGPOST=0.9998;RSQ=0.9987;ERATE=0.0003;THETA=0.0002;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 104699485 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0081;AVGPOST=0.9993;RSQ=0.9695;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104699527 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.8170;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104699549 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.850;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8755;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104699673 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.7400;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104699771 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2769;AVGPOST=0.9978;RSQ=0.9960;ERATE=0.0004;THETA=0.0003;AC=606;AN=2184 GT:DS:GL:BD 0.27747253 0 1 104699823 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104699854 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104699900 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0046;AVGPOST=1.0000;RSQ=0.9952;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104699908 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7068;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104699940 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104700012 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2075;AVGPOST=0.9995;RSQ=0.9987;ERATE=0.0003;THETA=0.0004;AC=452;AN=2184 GT:DS:GL:BD 0.20695971 0 1 104700120 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0002;AVGPOST=0.9996;RSQ=0.2952;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104700155 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0829;AVGPOST=0.9994;RSQ=0.9967;ERATE=0.0004;THETA=0.0002;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 104700305 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8619;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104700319 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104700333 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0829;AVGPOST=0.9996;RSQ=0.9977;ERATE=0.0003;THETA=0.0005;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 104700628 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104700650 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0135;AVGPOST=0.9995;RSQ=0.9846;ERATE=0.0003;THETA=0.0002;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104700661 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0134;AVGPOST=0.9996;RSQ=0.9869;ERATE=0.0003;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104700758 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.876;LDAF=0.0066;AVGPOST=0.9968;RSQ=0.8219;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104700795 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0829;AVGPOST=0.9995;RSQ=0.9977;ERATE=0.0003;THETA=0.0024;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 104700810 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104700866 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7921;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104700977 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.946;LDAF=0.0520;AVGPOST=0.9936;RSQ=0.9567;ERATE=0.0004;THETA=0.0005;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 104701043 . AG A 114 PASS INDEL;BAVGPOST=0.999;BRSQ=0.749;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5765;ERATE=0.0007;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104701058 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.913;LDAF=0.0068;AVGPOST=0.9993;RSQ=0.9561;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104701168 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.6944;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104701175 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.810;LDAF=0.0063;AVGPOST=0.9979;RSQ=0.8883;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104701250 . TA T 70 PASS INDEL;BAVGPOST=0.630;BRSQ=0.014;LDAF=0.2133;AVGPOST=0.7518;RSQ=0.3951;ERATE=0.0092;THETA=0.0003;AC=277;AN=2184 GT:DS:GL:BD 0.12683150 0 1 104701515 . TA T 1157 PASS INDEL;BAVGPOST=0.770;BRSQ=0.263;LDAF=0.2317;AVGPOST=0.7388;RSQ=0.3945;ERATE=0.0190;THETA=0.0004;AC=316;AN=2184 GT:DS:GL:BD 0.14468865 0 1 104701517 rs71874707 T TA 3115 PASS INDEL;BAVGPOST=0.623;BRSQ=0.349;LDAF=0.5284;AVGPOST=0.6672;RSQ=0.4449;ERATE=0.0272;THETA=0.0005;AC=1119;AN=2184 GT:DS:GL:BD 0.51236266 1 1 104701519 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.878;LDAF=0.0392;AVGPOST=0.9976;RSQ=0.9727;ERATE=0.0006;THETA=0.0006;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 104701551 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.459;LDAF=0.0028;AVGPOST=0.9963;RSQ=0.4996;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104701561 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.950;LDAF=0.0846;AVGPOST=0.9930;RSQ=0.9660;ERATE=0.0010;THETA=0.0004;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 104701564 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.973;LDAF=0.1643;AVGPOST=0.9871;RSQ=0.9645;ERATE=0.0012;THETA=0.0004;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 104701610 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.2817;AVGPOST=0.9883;RSQ=0.9767;ERATE=0.0014;THETA=0.0003;AC=614;AN=2184 GT:DS:GL:BD 0.28113553 0 1 104701629 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0154;AVGPOST=0.9977;RSQ=0.9293;ERATE=0.0006;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104701679 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.944;LDAF=0.4394;AVGPOST=0.9707;RSQ=0.9550;ERATE=0.0039;THETA=0.0003;AC=965;AN=2184 GT:DS:GL:BD 0.44184983 0 1 104701703 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.747;LDAF=0.0048;AVGPOST=0.9975;RSQ=0.8004;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104701845 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5169;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104701925 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4778;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104701946 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.946;LDAF=0.0300;AVGPOST=0.9952;RSQ=0.9460;ERATE=0.0004;THETA=0.0004;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 104702013 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.6554;AVGPOST=0.9929;RSQ=0.9904;ERATE=0.0009;THETA=0.0010;AC=1434;AN=2184 GT:DS:GL:BD 0.65659338 1 1 104702068 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6602;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104702173 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.997;LDAF=0.4092;AVGPOST=0.9967;RSQ=0.9939;ERATE=0.0010;THETA=0.0009;AC=895;AN=2184 GT:DS:GL:BD 0.40979853 0 1 104702369 . G GC 7319 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0843;AVGPOST=0.9963;RSQ=0.9794;ERATE=0.0007;THETA=0.0004;AC=182;AN=2184 GT:DS:GL:BD 0.08333334 0 1 104702419 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.897;LDAF=0.0082;AVGPOST=0.9988;RSQ=0.9362;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104702552 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0464;AVGPOST=0.9991;RSQ=0.9919;ERATE=0.0004;THETA=0.0013;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 104702635 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104702677 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9488;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104702936 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9437;ERATE=0.0003;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104702941 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6436;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104703092 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0167;AVGPOST=0.9985;RSQ=0.9703;ERATE=0.0003;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 104703213 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6678;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104703233 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.798;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7277;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104703296 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9117;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104703386 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5357;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104703416 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0043;AVGPOST=0.9994;RSQ=0.9352;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104703728 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.742;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6530;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104703797 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0478;AVGPOST=0.9982;RSQ=0.9859;ERATE=0.0003;THETA=0.0006;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 104703947 . G GT 194 PASS INDEL;BAVGPOST=0.980;BRSQ=0.492;LDAF=0.0323;AVGPOST=0.9586;RSQ=0.4665;ERATE=0.0107;THETA=0.0007;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 104704066 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0050;AVGPOST=0.9995;RSQ=0.9504;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104704130 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6108;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104704186 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8182;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104704290 . AC A 1178 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0096;AVGPOST=0.9990;RSQ=0.9654;ERATE=0.0004;THETA=0.0011;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104704325 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104704341 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9605;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104704492 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104704555 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0042;AVGPOST=0.9984;RSQ=0.8720;ERATE=0.0003;THETA=0.0016;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104704583 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6196;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104704585 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.8042;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104704778 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0078;AVGPOST=0.9971;RSQ=0.8509;ERATE=0.0004;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104704822 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.6559;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104704933 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5354;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104705061 . A AC 6419 PASS INDEL;BAVGPOST=0.859;BRSQ=0.679;LDAF=0.2595;AVGPOST=0.8538;RSQ=0.7280;ERATE=0.0202;THETA=0.0005;AC=569;AN=2184 GT:DS:GL:BD 0.26053113 0 1 104705125 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.951;BRSQ=0.903;LDAF=0.3269;AVGPOST=0.9466;RSQ=0.9124;ERATE=0.0137;THETA=0.0008;AC=714;AN=2184 GT:DS:GL:BD 0.32692307 0 1 104705126 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.791;LDAF=0.0249;AVGPOST=0.9830;RSQ=0.7321;ERATE=0.0049;THETA=0.0011;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 104705127 . AC A 1068 PASS INDEL;BAVGPOST=0.990;BRSQ=0.784;LDAF=0.0307;AVGPOST=0.9794;RSQ=0.7343;ERATE=0.0037;THETA=0.0008;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 104705135 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0449;AVGPOST=0.9986;RSQ=0.9886;ERATE=0.0004;THETA=0.0010;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 104705160 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104705187 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.843;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8889;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104705316 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.975;LDAF=0.0453;AVGPOST=0.9979;RSQ=0.9848;ERATE=0.0004;THETA=0.0037;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 104705390 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.904;LDAF=0.0377;AVGPOST=0.9967;RSQ=0.9699;ERATE=0.0004;THETA=0.0006;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 104705558 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8867;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104705583 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6651;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104705605 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7297;ERATE=0.0005;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104705634 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8253;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104705666 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.848;LDAF=0.0041;AVGPOST=0.9987;RSQ=0.8840;ERATE=0.0004;THETA=0.0013;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104705672 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104705807 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3217;AVGPOST=0.9979;RSQ=0.9965;ERATE=0.0004;THETA=0.0006;AC=704;AN=2184 GT:DS:GL:BD 0.32234433 0 1 104705826 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0673;AVGPOST=0.9996;RSQ=0.9983;ERATE=0.0003;THETA=0.0005;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 104705834 rs75205061 AC A 1228 PASS INDEL;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0086;AVGPOST=0.9951;RSQ=0.7780;ERATE=0.0005;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104705842 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0163;AVGPOST=0.9993;RSQ=0.9844;ERATE=0.0003;THETA=0.0008;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 104705855 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4418;AVGPOST=0.9986;RSQ=0.9980;ERATE=0.0004;THETA=0.0008;AC=966;AN=2184 GT:DS:GL:BD 0.44230768 0 1 104705906 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104706002 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0037;AVGPOST=1.0000;RSQ=0.9941;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104706212 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104706271 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8122;ERATE=0.0012;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104706491 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9843;ERATE=0.0004;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104706581 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104706750 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8836;ERATE=0.0011;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104706810 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104706835 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0788;AVGPOST=0.9972;RSQ=0.9837;ERATE=0.0015;THETA=0.0004;AC=171;AN=2184 GT:DS:GL:BD 0.07829671 0 1 104706883 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8087;ERATE=0.0008;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104706943 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104707172 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0452;AVGPOST=0.9994;RSQ=0.9954;ERATE=0.0003;THETA=0.0003;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 104707218 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5749;AVGPOST=0.9963;RSQ=0.9952;ERATE=0.0004;THETA=0.0006;AC=1258;AN=2184 GT:DS:GL:BD 0.57600731 1 1 104707341 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0162;AVGPOST=0.9996;RSQ=0.9911;ERATE=0.0003;THETA=0.0013;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 104707536 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9667;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104707576 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104707590 . T TA 4195 PASS INDEL;BAVGPOST=0.982;BRSQ=0.838;LDAF=0.0481;AVGPOST=0.9725;RSQ=0.7806;ERATE=0.0086;THETA=0.0003;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 104707698 rs67988163 AC A 2419 PASS INDEL;BAVGPOST=0.997;BRSQ=0.972;LDAF=0.0467;AVGPOST=0.9933;RSQ=0.9451;ERATE=0.0017;THETA=0.0031;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 104707707 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9607;ERATE=0.0003;THETA=0.0111;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104707758 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9512;ERATE=0.0005;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104707812 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0031;AVGPOST=0.9996;RSQ=0.9519;ERATE=0.0003;THETA=0.0033;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104707829 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104707830 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104707854 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104707957 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=1.0000;RSQ=0.9963;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104708301 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104708397 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104708473 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0051;AVGPOST=0.9991;RSQ=0.9297;ERATE=0.0003;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104708487 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0561;AVGPOST=0.9968;RSQ=0.9758;ERATE=0.0003;THETA=0.0021;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 104708527 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0017;AVGPOST=0.9996;RSQ=0.9092;ERATE=0.0004;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104708550 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8689;ERATE=0.0003;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104708618 . G GAT 28 PASS INDEL;BAVGPOST=0.999;BRSQ=0.565;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0053;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104708633 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.983;LDAF=0.4294;AVGPOST=0.9851;RSQ=0.9814;ERATE=0.0004;THETA=0.0043;AC=933;AN=2184 GT:DS:GL:BD 0.42719781 0 1 104708670 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7683;ERATE=0.0005;THETA=0.0072;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104708705 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.916;LDAF=0.9380;AVGPOST=0.9796;RSQ=0.8692;ERATE=0.0032;THETA=0.0020;AC=2060;AN=2184 GT:DS:GL:BD 0.94322342 1 1 104708749 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6248;ERATE=0.0003;THETA=0.0042;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104709031 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0122;AVGPOST=0.9994;RSQ=0.9818;ERATE=0.0003;THETA=0.0054;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104709120 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0052;AVGPOST=0.9973;RSQ=0.8118;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104709126 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104709165 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0059;AVGPOST=0.9988;RSQ=0.9072;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104709218 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.978;LDAF=0.0123;AVGPOST=0.9990;RSQ=0.9731;ERATE=0.0003;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104709223 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104709253 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0036;AVGPOST=0.9983;RSQ=0.8290;ERATE=0.0003;THETA=0.0025;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104709327 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.843;LDAF=0.0020;AVGPOST=0.9992;RSQ=0.8229;ERATE=0.0004;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104709409 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7297;ERATE=0.0004;THETA=0.0055;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104709410 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.1005;AVGPOST=0.9973;RSQ=0.9894;ERATE=0.0006;THETA=0.0072;AC=220;AN=2184 GT:DS:GL:BD 0.10073260 0 1 104709457 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104709539 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0073;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104709674 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0668;AVGPOST=0.9999;RSQ=0.9990;ERATE=0.0004;THETA=0.0044;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 104709710 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0054;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104709711 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104709735 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104709750 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0315;AVGPOST=0.9996;RSQ=0.9954;ERATE=0.0003;THETA=0.0107;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 104709829 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0056;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104709831 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0049;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104709840 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104709874 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0080;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104709888 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0114;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104709904 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8783;ERATE=0.0009;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104709916 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0240;AVGPOST=0.9987;RSQ=0.9805;ERATE=0.0006;THETA=0.0037;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 104710007 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0162;AVGPOST=0.9992;RSQ=0.9822;ERATE=0.0005;THETA=0.0013;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 104710062 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9863;ERATE=0.0003;THETA=0.0079;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104710114 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9429;ERATE=0.0003;THETA=0.0023;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104710179 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0015;AVGPOST=0.9991;RSQ=0.7493;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104710203 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.943;LDAF=0.0185;AVGPOST=0.9940;RSQ=0.8754;ERATE=0.0006;THETA=0.0021;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 104710335 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.615;LDAF=0.0039;AVGPOST=0.9958;RSQ=0.5791;ERATE=0.0004;THETA=0.0016;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104710486 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.797;LDAF=0.0123;AVGPOST=0.9888;RSQ=0.6407;ERATE=0.0008;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104710490 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.576;LDAF=0.0035;AVGPOST=0.9953;RSQ=0.4262;ERATE=0.0005;THETA=0.0123;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104710541 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0004;AVGPOST=0.9997;RSQ=0.6674;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104710674 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5163;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104710763 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.753;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5736;ERATE=0.0004;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104710853 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8177;ERATE=0.0005;THETA=0.0067;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104710909 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104710946 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.942;LDAF=0.0177;AVGPOST=0.9961;RSQ=0.9134;ERATE=0.0004;THETA=0.0085;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 104711053 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0020;AVGPOST=0.9971;RSQ=0.4408;ERATE=0.0006;THETA=0.0032;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104711073 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.846;LDAF=0.0055;AVGPOST=0.9969;RSQ=0.7886;ERATE=0.0004;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104711133 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.844;LDAF=0.0064;AVGPOST=0.9963;RSQ=0.7878;ERATE=0.0005;THETA=0.0122;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104711142 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.711;LDAF=0.0064;AVGPOST=0.9961;RSQ=0.7583;ERATE=0.0007;THETA=0.0036;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104711156 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0048;AVGPOST=0.9957;RSQ=0.6413;ERATE=0.0005;THETA=0.0037;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104711186 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.501;LDAF=0.0011;AVGPOST=0.9984;RSQ=0.3653;ERATE=0.0007;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104711281 . AG A 29148 PASS INDEL;BAVGPOST=0.996;BRSQ=0.480;LDAF=0.9952;AVGPOST=0.9937;RSQ=0.4629;ERATE=0.0006;THETA=0.0036;AC=2177;AN=2184 GT:DS:GL:BD 0.99679488 1 1 104711346 . A AG 48 PASS INDEL;BAVGPOST=0.999;BRSQ=0.575;LDAF=0.0028;AVGPOST=0.9959;RSQ=0.4553;ERATE=0.0005;THETA=0.0018;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104711354 . CCT C 25 PASS INDEL;BAVGPOST=1.000;BRSQ=0.781;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6151;ERATE=0.0004;THETA=0.0039;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104711546 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5533;ERATE=0.0004;THETA=0.0038;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104711648 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0025;AVGPOST=0.9971;RSQ=0.5431;ERATE=0.0006;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104711668 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8924;ERATE=0.0003;THETA=0.0044;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104711783 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0029;AVGPOST=0.9975;RSQ=0.7267;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104711977 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5706;ERATE=0.0004;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104712106 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0031;AVGPOST=0.9985;RSQ=0.7965;ERATE=0.0004;THETA=0.0016;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104712164 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0536;AVGPOST=0.9939;RSQ=0.9524;ERATE=0.0005;THETA=0.0007;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 104712166 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0068;AVGPOST=0.9980;RSQ=0.8716;ERATE=0.0009;THETA=0.0044;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104712249 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0048;AVGPOST=0.9987;RSQ=0.9034;ERATE=0.0003;THETA=0.0020;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104712256 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0004;THETA=0.0098;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104712341 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.803;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.6110;ERATE=0.0005;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104712406 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0146;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104712495 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0053;AVGPOST=0.9992;RSQ=0.9395;ERATE=0.0003;THETA=0.0048;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104712528 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8497;ERATE=0.0003;THETA=0.0098;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104712643 . ACTGT A 5230 PASS INDEL;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0249;AVGPOST=0.9973;RSQ=0.9596;ERATE=0.0004;THETA=0.0038;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 104712680 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.963;LDAF=0.2635;AVGPOST=0.9852;RSQ=0.9733;ERATE=0.0009;THETA=0.0004;AC=574;AN=2184 GT:DS:GL:BD 0.26282051 0 1 104712732 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.954;LDAF=0.2482;AVGPOST=0.9894;RSQ=0.9802;ERATE=0.0005;THETA=0.0003;AC=544;AN=2184 GT:DS:GL:BD 0.24908425 0 1 104712797 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.950;LDAF=0.2589;AVGPOST=0.9865;RSQ=0.9744;ERATE=0.0010;THETA=0.0002;AC=570;AN=2184 GT:DS:GL:BD 0.26098901 0 1 104712828 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0146;AVGPOST=0.9991;RSQ=0.9726;ERATE=0.0005;THETA=0.0007;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 104712839 . C CA 956 PASS INDEL;BAVGPOST=0.695;BRSQ=0.078;LDAF=0.7612;AVGPOST=0.6831;RSQ=0.2810;ERATE=0.0176;THETA=0.0004;AC=1877;AN=2184 GT:DS:GL:BD 0.85943222 1 1 104712979 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0009;AVGPOST=0.9988;RSQ=0.4440;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104713022 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.7327;AVGPOST=0.9963;RSQ=0.9930;ERATE=0.0005;THETA=0.0002;AC=1602;AN=2184 GT:DS:GL:BD 0.73351645 1 1 104713092 rs58628498 TA T 68366 PASS INDEL;BAVGPOST=0.987;BRSQ=0.973;LDAF=0.7170;AVGPOST=0.9716;RSQ=0.9478;ERATE=0.0090;THETA=0.0006;AC=1580;AN=2184 GT:DS:GL:BD 0.72344321 1 1 104713112 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.628;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5971;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104713138 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.738;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4848;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104713203 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9534;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104713262 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0194;AVGPOST=0.9995;RSQ=0.9894;ERATE=0.0004;THETA=0.0003;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 104713263 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6386;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104713303 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104713373 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8037;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104713384 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0018;AVGPOST=0.9999;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104713420 . C CT 11 PASS INDEL;BAVGPOST=0.992;BRSQ=0.440;LDAF=0.0208;AVGPOST=0.9693;RSQ=0.3950;ERATE=0.0055;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104713592 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9524;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104713703 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2929;AVGPOST=0.9995;RSQ=0.9989;ERATE=0.0004;THETA=0.0004;AC=639;AN=2184 GT:DS:GL:BD 0.29258242 0 1 104713737 . A AT 22 PASS INDEL;BAVGPOST=0.998;BRSQ=0.696;LDAF=0.0030;AVGPOST=0.9971;RSQ=0.5980;ERATE=0.0010;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104713786 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2553;AVGPOST=0.9991;RSQ=0.9981;ERATE=0.0003;THETA=0.0002;AC=556;AN=2184 GT:DS:GL:BD 0.25457877 0 1 104713841 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104713908 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5446;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104713940 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.918;LDAF=0.0092;AVGPOST=0.9968;RSQ=0.8720;ERATE=0.0009;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104714057 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5763;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104714147 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6140;ERATE=0.0004;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104714185 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9858;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104714294 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7566;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104714320 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104714328 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7535;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104714354 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0041;AVGPOST=0.9998;RSQ=0.9735;ERATE=0.0003;THETA=0.0022;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104714622 . CTTTG C 32 PASS INDEL;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4452;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104714750 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8010;ERATE=0.0005;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104714808 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.976;LDAF=0.2944;AVGPOST=0.9804;RSQ=0.9618;ERATE=0.0015;THETA=0.0007;AC=649;AN=2184 GT:DS:GL:BD 0.29716116 0 1 104714836 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.655;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.3976;ERATE=0.0005;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104714961 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.934;LDAF=0.0142;AVGPOST=0.9989;RSQ=0.9665;ERATE=0.0005;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 104715088 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.874;LDAF=0.0230;AVGPOST=0.9931;RSQ=0.8826;ERATE=0.0003;THETA=0.0002;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 104715150 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104715211 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.779;LDAF=0.0040;AVGPOST=0.9961;RSQ=0.6494;ERATE=0.0015;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104715567 . CT C 660 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0082;AVGPOST=0.9990;RSQ=0.9475;ERATE=0.0004;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104715760 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0168;AVGPOST=0.9980;RSQ=0.9470;ERATE=0.0007;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 104715781 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.828;LDAF=0.0438;AVGPOST=0.9833;RSQ=0.8479;ERATE=0.0005;THETA=0.0005;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 104715814 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.990;LDAF=0.2651;AVGPOST=0.9967;RSQ=0.9927;ERATE=0.0007;THETA=0.0003;AC=578;AN=2184 GT:DS:GL:BD 0.26465201 0 1 104715899 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104716128 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6717;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104716219 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104716222 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0032;AVGPOST=0.9994;RSQ=0.9268;ERATE=0.0005;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104716226 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9999;RSQ=0.9881;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104716251 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0062;AVGPOST=0.9992;RSQ=0.9516;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104716288 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0151;AVGPOST=1.0000;RSQ=0.9986;ERATE=0.0003;THETA=0.0002;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 104716422 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.6960;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104716455 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0140;AVGPOST=0.9992;RSQ=0.9804;ERATE=0.0003;THETA=0.0009;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 104716732 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.2651;AVGPOST=0.9992;RSQ=0.9983;ERATE=0.0003;THETA=0.0004;AC=578;AN=2184 GT:DS:GL:BD 0.26465201 0 1 104716788 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7910;ERATE=0.0006;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104716872 . T TA 47 PASS INDEL;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6108;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104716916 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.970;LDAF=0.0304;AVGPOST=0.9962;RSQ=0.9505;ERATE=0.0003;THETA=0.0004;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 104717077 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2673;AVGPOST=0.9965;RSQ=0.9931;ERATE=0.0006;THETA=0.0002;AC=584;AN=2184 GT:DS:GL:BD 0.26739928 0 1 104717133 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2830;AVGPOST=0.9973;RSQ=0.9948;ERATE=0.0006;THETA=0.0004;AC=615;AN=2184 GT:DS:GL:BD 0.28159341 0 1 104717275 rs3999763 TAAATAA T 32303 PASS INDEL;BAVGPOST=0.960;BRSQ=0.919;LDAF=0.2559;AVGPOST=0.9824;RSQ=0.9680;ERATE=0.0017;THETA=0.0003;AC=561;AN=2184 GT:DS:GL:BD 0.25686812 0 1 104717401 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7625;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104717447 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9989;RSQ=0.9155;ERATE=0.0005;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104717463 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.823;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8844;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104717495 . CAT C 60 PASS INDEL;BAVGPOST=1.000;BRSQ=0.762;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.5153;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104717526 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2660;AVGPOST=0.9994;RSQ=0.9987;ERATE=0.0003;THETA=0.0005;AC=580;AN=2184 GT:DS:GL:BD 0.26556778 0 1 104717590 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6544;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104717668 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0184;AVGPOST=0.9999;RSQ=0.9967;ERATE=0.0003;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 104717734 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0370;AVGPOST=0.9989;RSQ=0.9873;ERATE=0.0004;THETA=0.0005;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 104717848 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0343;AVGPOST=0.9996;RSQ=0.9948;ERATE=0.0003;THETA=0.0005;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 104717859 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2261;AVGPOST=0.9980;RSQ=0.9963;ERATE=0.0005;THETA=0.0014;AC=494;AN=2184 GT:DS:GL:BD 0.22619048 0 1 104717963 . AC A 43 PASS INDEL;BAVGPOST=0.999;BRSQ=0.726;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7497;ERATE=0.0005;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104717981 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.830;LDAF=0.0026;AVGPOST=0.9982;RSQ=0.7478;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104718206 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7834;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104718278 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0074;AVGPOST=0.9989;RSQ=0.9430;ERATE=0.0004;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104718311 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6120;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104718417 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.925;LDAF=0.0245;AVGPOST=0.9992;RSQ=0.9855;ERATE=0.0003;THETA=0.0006;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 104718441 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8801;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104718581 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0034;AVGPOST=0.9978;RSQ=0.7503;ERATE=0.0005;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104718774 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0405;AVGPOST=0.9937;RSQ=0.9475;ERATE=0.0004;THETA=0.0004;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 104718784 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0021;AVGPOST=0.9967;RSQ=0.3942;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104718845 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.789;LDAF=0.0089;AVGPOST=0.9968;RSQ=0.8599;ERATE=0.0006;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104718871 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0057;AVGPOST=0.9994;RSQ=0.9555;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104718980 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0061;AVGPOST=0.9994;RSQ=0.9550;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104719102 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7209;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104719176 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5235;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104719229 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0096;AVGPOST=0.9985;RSQ=0.9402;ERATE=0.0003;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104719271 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.848;LDAF=0.0026;AVGPOST=0.9982;RSQ=0.6905;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104719373 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0024;AVGPOST=0.9985;RSQ=0.7873;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104719378 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0018;AVGPOST=0.9997;RSQ=0.9323;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104719403 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8576;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104719501 . A ATC 78 PASS INDEL;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5736;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104719545 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0185;AVGPOST=0.9995;RSQ=0.9880;ERATE=0.0004;THETA=0.0008;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 104719599 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0802;AVGPOST=0.9991;RSQ=0.9957;ERATE=0.0003;THETA=0.0007;AC=175;AN=2184 GT:DS:GL:BD 0.08012821 0 1 104719656 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.924;LDAF=0.0073;AVGPOST=0.9979;RSQ=0.8987;ERATE=0.0004;THETA=0.0009;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104719662 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6948;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104719663 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0344;AVGPOST=0.9994;RSQ=0.9928;ERATE=0.0003;THETA=0.0008;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 104719693 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0065;AVGPOST=0.9997;RSQ=0.9798;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104719814 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0346;AVGPOST=0.9992;RSQ=0.9906;ERATE=0.0003;THETA=0.0005;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 104719856 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2265;AVGPOST=0.9982;RSQ=0.9961;ERATE=0.0003;THETA=0.0003;AC=495;AN=2184 GT:DS:GL:BD 0.22664835 0 1 104719912 . T TG 330 PASS INDEL;BAVGPOST=0.998;BRSQ=0.757;LDAF=0.0043;AVGPOST=0.9974;RSQ=0.7505;ERATE=0.0008;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104720018 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8276;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104720084 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104720086 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6208;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104720147 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.863;LDAF=0.0129;AVGPOST=0.9974;RSQ=0.9229;ERATE=0.0003;THETA=0.0011;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104720149 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7804;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104720278 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6199;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104720312 . CAA C 119 PASS INDEL;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5548;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104720406 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8453;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104720421 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0344;AVGPOST=0.9993;RSQ=0.9909;ERATE=0.0003;THETA=0.0002;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 104720699 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8234;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104720705 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0165;AVGPOST=0.9989;RSQ=0.9718;ERATE=0.0003;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 104720768 . T TG 34 PASS INDEL;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0025;AVGPOST=0.9976;RSQ=0.6259;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104720808 . TA T 266 PASS INDEL;BAVGPOST=0.996;BRSQ=0.634;LDAF=0.0051;AVGPOST=0.9973;RSQ=0.7847;ERATE=0.0007;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104720881 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0050;AVGPOST=0.9980;RSQ=0.8361;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104720897 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0105;AVGPOST=0.9989;RSQ=0.9543;ERATE=0.0005;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104720950 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7541;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104720973 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5254;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104720990 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0379;AVGPOST=0.9984;RSQ=0.9819;ERATE=0.0004;THETA=0.0007;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 104721017 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0010;AVGPOST=0.9985;RSQ=0.3177;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104721037 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2248;AVGPOST=0.9961;RSQ=0.9918;ERATE=0.0006;THETA=0.0006;AC=493;AN=2184 GT:DS:GL:BD 0.22573259 0 1 104721095 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0026;AVGPOST=0.9989;RSQ=0.8361;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104721204 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.803;LDAF=0.0034;AVGPOST=0.9963;RSQ=0.5641;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104721271 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.986;LDAF=0.0802;AVGPOST=0.9978;RSQ=0.9877;ERATE=0.0008;THETA=0.0027;AC=174;AN=2184 GT:DS:GL:BD 0.07967033 0 1 104721362 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.660;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.5048;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104721421 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0068;AVGPOST=0.9992;RSQ=0.9449;ERATE=0.0003;THETA=0.0029;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104721455 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.786;LDAF=0.0029;AVGPOST=0.9979;RSQ=0.6930;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104721476 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.796;LDAF=0.0053;AVGPOST=0.9976;RSQ=0.8076;ERATE=0.0005;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104721622 . T TA 167 PASS INDEL;BAVGPOST=0.988;BRSQ=0.190;LDAF=0.0032;AVGPOST=0.9963;RSQ=0.5341;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104721698 . A AT 2338 PASS INDEL;BAVGPOST=0.991;BRSQ=0.952;LDAF=0.0915;AVGPOST=0.9770;RSQ=0.8955;ERATE=0.0031;THETA=0.0006;AC=185;AN=2184 GT:DS:GL:BD 0.08470696 0 1 104721702 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0024;AVGPOST=0.9963;RSQ=0.4230;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104721750 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5281;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104721780 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0383;AVGPOST=0.9991;RSQ=0.9888;ERATE=0.0004;THETA=0.0003;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 104721802 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0099;AVGPOST=0.9985;RSQ=0.9377;ERATE=0.0003;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104721847 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0025;AVGPOST=0.9974;RSQ=0.5098;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104721906 rs72392539 GAAAACA G 12203 PASS INDEL;BAVGPOST=0.984;BRSQ=0.963;LDAF=0.2482;AVGPOST=0.9753;RSQ=0.9546;ERATE=0.0015;THETA=0.0004;AC=536;AN=2184 GT:DS:GL:BD 0.24542125 0 1 104721924 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.980;LDAF=0.0795;AVGPOST=0.9995;RSQ=0.9971;ERATE=0.0003;THETA=0.0008;AC=174;AN=2184 GT:DS:GL:BD 0.07967033 0 1 104721994 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104722062 . TC T 64 PASS INDEL;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0023;AVGPOST=0.9974;RSQ=0.5499;ERATE=0.0004;THETA=0.0034;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104722165 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0379;AVGPOST=0.9986;RSQ=0.9840;ERATE=0.0003;THETA=0.0003;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 104722360 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0041;AVGPOST=0.9985;RSQ=0.8465;ERATE=0.0004;THETA=0.0013;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104722459 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0078;AVGPOST=0.9989;RSQ=0.9421;ERATE=0.0005;THETA=0.0048;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104722512 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0041;AVGPOST=0.9986;RSQ=0.8504;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104722550 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.986;LDAF=0.7585;AVGPOST=0.9945;RSQ=0.9897;ERATE=0.0004;THETA=0.0006;AC=1655;AN=2184 GT:DS:GL:BD 0.75778389 1 1 104722577 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0021;AVGPOST=0.9971;RSQ=0.4343;ERATE=0.0006;THETA=0.0049;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104722632 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.890;BRSQ=0.819;LDAF=0.5104;AVGPOST=0.8707;RSQ=0.8174;ERATE=0.0092;THETA=0.0083;AC=1107;AN=2184 GT:DS:GL:BD 0.50686812 1 1 104722655 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.746;LDAF=0.0077;AVGPOST=0.9967;RSQ=0.8347;ERATE=0.0005;THETA=0.0185;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104722707 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.758;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4401;ERATE=0.0005;THETA=0.0145;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104722712 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4359;ERATE=0.0004;THETA=0.0163;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104722733 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0003;THETA=0.0113;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104722741 . ATAT A 122 PASS INDEL;BAVGPOST=1.000;BRSQ=0.683;LDAF=0.0017;AVGPOST=0.9986;RSQ=0.6475;ERATE=0.0005;THETA=0.0096;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104722761 rs61117416 TTTA T 2742 PASS INDEL;BAVGPOST=0.903;BRSQ=0.753;LDAF=0.2178;AVGPOST=0.9070;RSQ=0.7992;ERATE=0.0016;THETA=0.0049;AC=444;AN=2184 GT:DS:GL:BD 0.20329671 0 1 104722770 rs61117416 TA T 1305 PASS INDEL;BAVGPOST=0.903;BRSQ=0.761;LDAF=0.2211;AVGPOST=0.9085;RSQ=0.8063;ERATE=0.0007;THETA=0.0031;AC=459;AN=2184 GT:DS:GL:BD 0.21016483 0 1 104722772 rs61117416 AAT A 6392 PASS INDEL;BAVGPOST=0.902;BRSQ=0.760;LDAF=0.2270;AVGPOST=0.9070;RSQ=0.8074;ERATE=0.0016;THETA=0.0212;AC=471;AN=2184 GT:DS:GL:BD 0.21565934 0 1 104722773 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.909;BRSQ=0.835;LDAF=0.3489;AVGPOST=0.8979;RSQ=0.8345;ERATE=0.0075;THETA=0.0205;AC=727;AN=2184 GT:DS:GL:BD 0.33287546 0 1 104722834 . AAC A 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4990;ERATE=0.0005;THETA=0.0202;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104722954 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.763;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.5430;ERATE=0.0007;THETA=0.0262;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104722964 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.887;LDAF=0.0133;AVGPOST=0.9961;RSQ=0.8943;ERATE=0.0005;THETA=0.0068;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104723026 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0077;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104723030 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.798;LDAF=0.0049;AVGPOST=0.9953;RSQ=0.6088;ERATE=0.0007;THETA=0.0236;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104723154 . G GA 104 PASS INDEL;BAVGPOST=0.999;BRSQ=0.717;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.5940;ERATE=0.0003;THETA=0.0078;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104723157 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.955;LDAF=0.0122;AVGPOST=0.9992;RSQ=0.9745;ERATE=0.0003;THETA=0.0138;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104723433 . A AG 11432 PASS INDEL;BAVGPOST=0.865;BRSQ=0.741;LDAF=0.5963;AVGPOST=0.8421;RSQ=0.7476;ERATE=0.0252;THETA=0.0038;AC=1357;AN=2184 GT:DS:GL:BD 0.62133700 1 1 104723540 rs76067284 G GT 62224 PASS INDEL;BAVGPOST=0.968;BRSQ=0.941;LDAF=0.7197;AVGPOST=0.9516;RSQ=0.9136;ERATE=0.0004;THETA=0.0091;AC=1581;AN=2184 GT:DS:GL:BD 0.72390109 1 1 104723541 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.863;LDAF=0.0108;AVGPOST=0.9958;RSQ=0.8456;ERATE=0.0003;THETA=0.0047;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104723583 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.942;LDAF=0.0183;AVGPOST=0.9967;RSQ=0.9354;ERATE=0.0003;THETA=0.0045;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 104723759 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5756;ERATE=0.0004;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104723843 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4934;ERATE=0.0004;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104723928 . GC G 136 PASS INDEL;BAVGPOST=0.999;BRSQ=0.824;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.5981;ERATE=0.0011;THETA=0.0021;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104724013 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1074;AVGPOST=0.9958;RSQ=0.9835;ERATE=0.0003;THETA=0.0017;AC=232;AN=2184 GT:DS:GL:BD 0.10622711 0 1 104724123 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.4626;ERATE=0.0004;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104724128 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104724229 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8919;ERATE=0.0004;THETA=0.0016;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104724383 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.915;LDAF=0.0121;AVGPOST=0.9984;RSQ=0.9476;ERATE=0.0003;THETA=0.0045;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104724461 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7664;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104724485 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0078;AVGPOST=0.9994;RSQ=0.9665;ERATE=0.0003;THETA=0.0013;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104724504 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.824;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.7927;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104724529 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0004;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104724565 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.656;LDAF=0.0026;AVGPOST=0.9971;RSQ=0.4922;ERATE=0.0005;THETA=0.0059;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104724699 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.889;LDAF=0.0125;AVGPOST=0.9963;RSQ=0.8951;ERATE=0.0003;THETA=0.0052;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104724754 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.949;LDAF=0.1084;AVGPOST=0.9935;RSQ=0.9709;ERATE=0.0007;THETA=0.0051;AC=235;AN=2184 GT:DS:GL:BD 0.10760073 0 1 104724822 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0023;AVGPOST=0.9973;RSQ=0.5181;ERATE=0.0004;THETA=0.0038;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104724836 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.979;LDAF=0.1083;AVGPOST=0.9964;RSQ=0.9847;ERATE=0.0007;THETA=0.0022;AC=233;AN=2184 GT:DS:GL:BD 0.10668498 0 1 104724895 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0032;AVGPOST=0.9981;RSQ=0.7498;ERATE=0.0003;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104724945 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.988;LDAF=0.4965;AVGPOST=0.9904;RSQ=0.9877;ERATE=0.0004;THETA=0.0006;AC=1086;AN=2184 GT:DS:GL:BD 0.49725273 0 1 104724968 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7344;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104725010 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5367;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104725120 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0050;AVGPOST=0.9991;RSQ=0.9192;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104725135 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.978;LDAF=0.1081;AVGPOST=0.9982;RSQ=0.9924;ERATE=0.0004;THETA=0.0015;AC=234;AN=2184 GT:DS:GL:BD 0.10714286 0 1 104725166 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.979;LDAF=0.1074;AVGPOST=0.9989;RSQ=0.9954;ERATE=0.0003;THETA=0.0008;AC=233;AN=2184 GT:DS:GL:BD 0.10668498 0 1 104725186 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0149;AVGPOST=0.9983;RSQ=0.9593;ERATE=0.0004;THETA=0.0008;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 104725223 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.741;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.4882;ERATE=0.0005;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104725279 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.494;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104725281 . A AT 1401 PASS INDEL;BAVGPOST=0.984;BRSQ=0.874;LDAF=0.0540;AVGPOST=0.9859;RSQ=0.8941;ERATE=0.0007;THETA=0.0003;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 104725318 . TTTG T 30 PASS INDEL;BAVGPOST=0.997;BRSQ=0.580;LDAF=0.0066;AVGPOST=0.9925;RSQ=0.5324;ERATE=0.0027;THETA=0.0025;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104725496 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.8031;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104725530 . CAAGA C 250 PASS INDEL;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7051;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104725641 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0180;AVGPOST=0.9985;RSQ=0.9728;ERATE=0.0003;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 104725664 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0082;AVGPOST=0.9991;RSQ=0.9612;ERATE=0.0004;THETA=0.0033;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104725677 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4734;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104725739 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9249;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104725748 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5775;ERATE=0.0004;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104725797 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6199;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104725837 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.762;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6488;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104725850 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.6103;AVGPOST=0.9943;RSQ=0.9918;ERATE=0.0003;THETA=0.0004;AC=1333;AN=2184 GT:DS:GL:BD 0.61034799 1 1 104725865 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6169;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104725922 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.796;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8451;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104726035 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.2601;AVGPOST=0.9935;RSQ=0.9878;ERATE=0.0004;THETA=0.0007;AC=567;AN=2184 GT:DS:GL:BD 0.25961539 0 1 104726092 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6228;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104726098 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0022;AVGPOST=0.9986;RSQ=0.8064;ERATE=0.0004;THETA=0.0018;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104726218 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104726300 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0199;AVGPOST=0.9990;RSQ=0.9828;ERATE=0.0003;THETA=0.0007;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 104726330 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0187;AVGPOST=0.9987;RSQ=0.9771;ERATE=0.0003;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 104726356 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0198;AVGPOST=0.9993;RSQ=0.9877;ERATE=0.0003;THETA=0.0006;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 104726377 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0217;AVGPOST=0.9991;RSQ=0.9864;ERATE=0.0003;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 104726414 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0217;AVGPOST=0.9992;RSQ=0.9881;ERATE=0.0003;THETA=0.0007;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 104726419 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0215;AVGPOST=0.9990;RSQ=0.9846;ERATE=0.0003;THETA=0.0011;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 104726452 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0025;AVGPOST=0.9987;RSQ=0.7515;ERATE=0.0004;THETA=0.0038;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104726523 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.968;LDAF=0.0652;AVGPOST=0.9947;RSQ=0.9677;ERATE=0.0004;THETA=0.0006;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 104726582 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0194;AVGPOST=0.9995;RSQ=0.9884;ERATE=0.0003;THETA=0.0003;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 104726651 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0195;AVGPOST=0.9992;RSQ=0.9811;ERATE=0.0004;THETA=0.0005;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 104726652 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.990;LDAF=0.2021;AVGPOST=0.9945;RSQ=0.9868;ERATE=0.0006;THETA=0.0002;AC=440;AN=2184 GT:DS:GL:BD 0.20146520 0 1 104726693 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0194;AVGPOST=0.9994;RSQ=0.9839;ERATE=0.0004;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 104726734 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.843;LDAF=0.0055;AVGPOST=0.9968;RSQ=0.7394;ERATE=0.0005;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104726796 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0195;AVGPOST=0.9994;RSQ=0.9861;ERATE=0.0003;THETA=0.0003;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 104726827 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5799;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104726936 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0026;AVGPOST=0.9985;RSQ=0.7379;ERATE=0.0007;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104727025 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.807;LDAF=0.0061;AVGPOST=0.9970;RSQ=0.8210;ERATE=0.0005;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104727083 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9156;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104727215 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0194;AVGPOST=0.9996;RSQ=0.9907;ERATE=0.0003;THETA=0.0008;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 104727270 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0028;AVGPOST=0.9988;RSQ=0.8005;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104727410 . A AC 89 PASS INDEL;BAVGPOST=1.000;BRSQ=0.767;LDAF=0.0025;AVGPOST=0.9964;RSQ=0.4566;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104727436 . AC A 2174 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0194;AVGPOST=0.9996;RSQ=0.9896;ERATE=0.0003;THETA=0.0007;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 104727497 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104727562 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8536;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104727617 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9999;AVGPOST=0.9998;RSQ=0.0498;ERATE=0.0003;THETA=0.0054;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 104727954 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.462;BRSQ=0.151;LDAF=0.4306;AVGPOST=0.6362;RSQ=0.3892;ERATE=0.0162;THETA=0.0007;AC=827;AN=2184 GT:DS:GL:BD 0.37866300 0 1 104728332 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5888;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104728421 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0372;AVGPOST=0.9997;RSQ=0.9959;ERATE=0.0003;THETA=0.0060;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 104728473 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0120;AVGPOST=0.9997;RSQ=0.9894;ERATE=0.0003;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104728553 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.653;LDAF=0.0010;AVGPOST=0.9985;RSQ=0.3726;ERATE=0.0004;THETA=0.0052;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104728633 . TATAAG T 2706 PASS INDEL;BAVGPOST=0.990;BRSQ=0.854;LDAF=0.0371;AVGPOST=0.9972;RSQ=0.9658;ERATE=0.0004;THETA=0.0005;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 104728648 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7946;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104728695 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.4694;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104728747 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0082;AVGPOST=0.9963;RSQ=0.8633;ERATE=0.0003;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104728757 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.4332;AVGPOST=0.9947;RSQ=0.9926;ERATE=0.0012;THETA=0.0008;AC=945;AN=2184 GT:DS:GL:BD 0.43269232 0 1 104728784 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104728815 . T TC 1083 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0282;AVGPOST=0.9957;RSQ=0.9447;ERATE=0.0006;THETA=0.0007;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 104728987 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.959;LDAF=0.0261;AVGPOST=0.9978;RSQ=0.9709;ERATE=0.0004;THETA=0.0009;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 104728988 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0019;AVGPOST=0.9978;RSQ=0.5565;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104729029 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.690;LDAF=0.0034;AVGPOST=0.9984;RSQ=0.7946;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104729084 rs35296926 AG A 28867 PASS INDEL;BAVGPOST=0.987;BRSQ=0.978;LDAF=0.3937;AVGPOST=0.9913;RSQ=0.9872;ERATE=0.0006;THETA=0.0002;AC=865;AN=2184 GT:DS:GL:BD 0.39606228 0 1 104729170 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.979;LDAF=0.3935;AVGPOST=0.9918;RSQ=0.9878;ERATE=0.0005;THETA=0.0004;AC=864;AN=2184 GT:DS:GL:BD 0.39560440 0 1 104729183 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0010;AVGPOST=0.9987;RSQ=0.3813;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104729191 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0210;AVGPOST=0.9983;RSQ=0.9720;ERATE=0.0004;THETA=0.0048;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 104729422 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0350;AVGPOST=0.9984;RSQ=0.9834;ERATE=0.0003;THETA=0.0014;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 104729426 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104729481 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.9014;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104729483 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104729530 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0110;AVGPOST=1.0000;RSQ=0.9983;ERATE=0.0003;THETA=0.0012;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104729617 . AATTT A 48 PASS INDEL;BAVGPOST=1.000;BRSQ=0.740;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5266;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104729730 . CT C 89 PASS INDEL;BAVGPOST=0.999;BRSQ=0.610;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5142;ERATE=0.0007;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104729839 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.654;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6211;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104729854 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0091;AVGPOST=0.9991;RSQ=0.9572;ERATE=0.0004;THETA=0.0029;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104729898 . TTC T 101 PASS INDEL;BAVGPOST=1.000;BRSQ=0.734;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7063;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104729916 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8317;ERATE=0.0003;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104729999 . C CT 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.742;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.4924;ERATE=0.0006;THETA=0.0030;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104730003 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.948;LDAF=0.0302;AVGPOST=0.9983;RSQ=0.9783;ERATE=0.0004;THETA=0.0009;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 104730083 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.9279;AVGPOST=0.9989;RSQ=0.9931;ERATE=0.0003;THETA=0.0004;AC=2027;AN=2184 GT:DS:GL:BD 0.92811358 1 1 104730130 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7100;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104730160 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104730241 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.4215;AVGPOST=0.9952;RSQ=0.9926;ERATE=0.0005;THETA=0.0008;AC=920;AN=2184 GT:DS:GL:BD 0.42124543 0 1 104730246 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.728;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4754;ERATE=0.0005;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104730280 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104730350 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0390;AVGPOST=0.9993;RSQ=0.9917;ERATE=0.0004;THETA=0.0006;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 104730398 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8425;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104730531 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4526;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104730618 . TA T 164 PASS INDEL;BAVGPOST=0.930;BRSQ=0.358;LDAF=0.0903;AVGPOST=0.8782;RSQ=0.4062;ERATE=0.0142;THETA=0.0004;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 104730731 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.525;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5598;ERATE=0.0009;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104730767 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0162;AVGPOST=0.9991;RSQ=0.9768;ERATE=0.0003;THETA=0.0006;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 104730848 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.9286;AVGPOST=0.9982;RSQ=0.9889;ERATE=0.0004;THETA=0.0004;AC=2028;AN=2184 GT:DS:GL:BD 0.92857140 1 1 104730983 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5216;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104731114 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6088;ERATE=0.0008;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104731144 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6880;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104731237 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.4141;AVGPOST=0.9962;RSQ=0.9947;ERATE=0.0005;THETA=0.0002;AC=905;AN=2184 GT:DS:GL:BD 0.41437730 0 1 104731340 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104731363 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.591;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6122;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104731462 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0634;AVGPOST=0.9989;RSQ=0.9940;ERATE=0.0003;THETA=0.0006;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 104731474 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.4897;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104731517 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104731548 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104731571 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.737;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6443;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104731721 . T TA 14 PASS INDEL;BAVGPOST=0.992;BRSQ=0.505;LDAF=0.0184;AVGPOST=0.9741;RSQ=0.4249;ERATE=0.0064;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104731745 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5093;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104731812 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0109;AVGPOST=0.9999;RSQ=0.9953;ERATE=0.0003;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104731817 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0278;AVGPOST=0.9982;RSQ=0.9770;ERATE=0.0004;THETA=0.0005;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 104731964 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.658;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5646;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104732148 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0093;AVGPOST=0.9979;RSQ=0.9275;ERATE=0.0004;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104732152 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.617;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4780;ERATE=0.0006;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104732163 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.869;LDAF=0.0178;AVGPOST=0.9970;RSQ=0.9305;ERATE=0.0003;THETA=0.0002;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 104732181 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5466;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104732240 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0129;AVGPOST=0.9999;RSQ=0.9957;ERATE=0.0003;THETA=0.0006;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104732300 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104732360 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0432;AVGPOST=0.9994;RSQ=0.9944;ERATE=0.0003;THETA=0.0004;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 104732556 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.4302;AVGPOST=0.9940;RSQ=0.9905;ERATE=0.0021;THETA=0.0009;AC=936;AN=2184 GT:DS:GL:BD 0.42857143 0 1 104732657 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6031;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104732807 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6992;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104732824 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0128;AVGPOST=0.9997;RSQ=0.9916;ERATE=0.0003;THETA=0.0002;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104732843 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6237;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104732851 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5797;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104732930 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.629;LDAF=0.9528;AVGPOST=0.9547;RSQ=0.6037;ERATE=0.0168;THETA=0.0015;AC=2114;AN=2184 GT:DS:GL:BD 0.96794873 1 1 104733114 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.9908;AVGPOST=0.9995;RSQ=0.9738;ERATE=0.0004;THETA=0.0007;AC=2164;AN=2184 GT:DS:GL:BD 0.99084246 1 1 104733141 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.554;LDAF=0.0171;AVGPOST=0.9804;RSQ=0.5541;ERATE=0.0073;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104733284 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0304;AVGPOST=0.9993;RSQ=0.9893;ERATE=0.0004;THETA=0.0006;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 104733286 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.9907;AVGPOST=0.9997;RSQ=0.9836;ERATE=0.0003;THETA=0.0013;AC=2164;AN=2184 GT:DS:GL:BD 0.99084246 1 1 104733295 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.898;LDAF=0.0089;AVGPOST=0.9987;RSQ=0.9350;ERATE=0.0003;THETA=0.0008;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104733412 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104733516 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.898;BRSQ=0.601;LDAF=0.8331;AVGPOST=0.8654;RSQ=0.5869;ERATE=0.0471;THETA=0.0004;AC=1909;AN=2184 GT:DS:GL:BD 0.87408423 1 1 104733743 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.941;BRSQ=0.894;LDAF=0.5500;AVGPOST=0.9604;RSQ=0.9390;ERATE=0.0014;THETA=0.0005;AC=1211;AN=2184 GT:DS:GL:BD 0.55448717 1 1 104733749 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104733826 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.9893;AVGPOST=0.9970;RSQ=0.9010;ERATE=0.0004;THETA=0.0006;AC=2160;AN=2184 GT:DS:GL:BD 0.98901099 1 1 104733865 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7369;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104733990 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5908;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104734033 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0070;AVGPOST=0.9990;RSQ=0.9493;ERATE=0.0003;THETA=0.0024;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104734044 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.847;LDAF=0.0042;AVGPOST=0.9986;RSQ=0.8548;ERATE=0.0005;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104734126 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.649;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5468;ERATE=0.0005;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104734166 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.847;LDAF=0.0031;AVGPOST=0.9980;RSQ=0.7642;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104734170 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104734343 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.9909;AVGPOST=0.9991;RSQ=0.9613;ERATE=0.0004;THETA=0.0030;AC=2164;AN=2184 GT:DS:GL:BD 0.99084246 1 1 104734419 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.813;LDAF=0.0040;AVGPOST=0.9989;RSQ=0.8762;ERATE=0.0005;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104734443 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0034;AVGPOST=0.9974;RSQ=0.7156;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104734573 . T TG 1249 PASS INDEL;BAVGPOST=0.998;BRSQ=0.951;LDAF=0.0180;AVGPOST=0.9966;RSQ=0.9178;ERATE=0.0006;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 104734611 . T TC 245 PASS INDEL;BAVGPOST=0.608;BRSQ=0.007;LDAF=0.7971;AVGPOST=0.7124;RSQ=0.2541;ERATE=0.0137;THETA=0.0011;AC=1973;AN=2184 GT:DS:GL:BD 0.90338826 1 1 104734748 . TG T 1166 PASS INDEL;BAVGPOST=0.949;BRSQ=0.557;LDAF=0.0932;AVGPOST=0.9162;RSQ=0.6265;ERATE=0.0072;THETA=0.0005;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 104735377 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0987;AVGPOST=0.9967;RSQ=0.9847;ERATE=0.0006;THETA=0.0011;AC=214;AN=2184 GT:DS:GL:BD 0.09798535 0 1 104735925 . ACT A 410 PASS INDEL;BAVGPOST=0.991;BRSQ=0.836;LDAF=0.0298;AVGPOST=0.9851;RSQ=0.8033;ERATE=0.0036;THETA=0.0031;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 104736000 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0004;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104736040 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.7098;ERATE=0.0004;THETA=0.0032;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104736081 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2602;AVGPOST=0.9888;RSQ=0.9789;ERATE=0.0009;THETA=0.0074;AC=568;AN=2184 GT:DS:GL:BD 0.26007327 0 1 104736310 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.0986;AVGPOST=0.9974;RSQ=0.9918;ERATE=0.0003;THETA=0.0036;AC=216;AN=2184 GT:DS:GL:BD 0.09890110 0 1 104736333 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.897;LDAF=0.1110;AVGPOST=0.9741;RSQ=0.9261;ERATE=0.0009;THETA=0.0059;AC=238;AN=2184 GT:DS:GL:BD 0.10897436 0 1 104736397 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.757;LDAF=0.0034;AVGPOST=0.9979;RSQ=0.7477;ERATE=0.0007;THETA=0.0037;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104736398 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.953;LDAF=0.0938;AVGPOST=0.9938;RSQ=0.9774;ERATE=0.0004;THETA=0.0039;AC=207;AN=2184 GT:DS:GL:BD 0.09478022 0 1 104736400 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.936;LDAF=0.0208;AVGPOST=0.9957;RSQ=0.9357;ERATE=0.0004;THETA=0.0013;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 104736429 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.982;LDAF=0.1624;AVGPOST=0.9922;RSQ=0.9787;ERATE=0.0005;THETA=0.0015;AC=354;AN=2184 GT:DS:GL:BD 0.16208792 0 1 104736437 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.969;LDAF=0.0285;AVGPOST=0.9971;RSQ=0.9639;ERATE=0.0005;THETA=0.0010;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 104736509 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.753;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4944;ERATE=0.0004;THETA=0.0082;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104736536 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.959;BRSQ=0.838;LDAF=0.1156;AVGPOST=0.9741;RSQ=0.9265;ERATE=0.0009;THETA=0.0009;AC=251;AN=2184 GT:DS:GL:BD 0.11492674 0 1 104736572 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0051;AVGPOST=0.9970;RSQ=0.7870;ERATE=0.0004;THETA=0.0050;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104736645 . A AG 171 PASS INDEL;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0057;AVGPOST=0.9976;RSQ=0.8066;ERATE=0.0005;THETA=0.0065;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104736779 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.952;BRSQ=0.852;LDAF=0.1551;AVGPOST=0.9640;RSQ=0.9012;ERATE=0.0014;THETA=0.0011;AC=344;AN=2184 GT:DS:GL:BD 0.15750916 0 1 104736917 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.437;LDAF=0.0058;AVGPOST=0.9922;RSQ=0.4538;ERATE=0.0009;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104736918 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.594;LDAF=0.0570;AVGPOST=0.9711;RSQ=0.8372;ERATE=0.0011;THETA=0.0009;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 104736949 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.755;LDAF=0.0267;AVGPOST=0.9924;RSQ=0.8945;ERATE=0.0006;THETA=0.0022;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 104736951 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.740;LDAF=0.0111;AVGPOST=0.9890;RSQ=0.6167;ERATE=0.0014;THETA=0.0025;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104737002 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.861;LDAF=0.1009;AVGPOST=0.9770;RSQ=0.9219;ERATE=0.0016;THETA=0.0012;AC=216;AN=2184 GT:DS:GL:BD 0.09890110 0 1 104737006 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.719;LDAF=0.0028;AVGPOST=0.9962;RSQ=0.4232;ERATE=0.0007;THETA=0.0044;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104737089 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.961;LDAF=0.5623;AVGPOST=0.9309;RSQ=0.9024;ERATE=0.0016;THETA=0.0013;AC=1242;AN=2184 GT:DS:GL:BD 0.56868130 1 1 104737100 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.628;LDAF=0.0133;AVGPOST=0.9936;RSQ=0.8260;ERATE=0.0006;THETA=0.0037;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104737142 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.967;LDAF=0.0990;AVGPOST=0.9874;RSQ=0.9602;ERATE=0.0006;THETA=0.0008;AC=216;AN=2184 GT:DS:GL:BD 0.09890110 0 1 104737143 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0977;AVGPOST=0.9973;RSQ=0.9899;ERATE=0.0004;THETA=0.0009;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 104737175 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.936;LDAF=0.1160;AVGPOST=0.9815;RSQ=0.9478;ERATE=0.0009;THETA=0.0050;AC=249;AN=2184 GT:DS:GL:BD 0.11401099 0 1 104737205 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0004;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104737251 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6622;ERATE=0.0004;THETA=0.0031;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104737319 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.949;LDAF=0.1073;AVGPOST=0.9890;RSQ=0.9678;ERATE=0.0009;THETA=0.0033;AC=233;AN=2184 GT:DS:GL:BD 0.10668498 0 1 104737420 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0041;AVGPOST=0.9971;RSQ=0.7100;ERATE=0.0004;THETA=0.0030;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104737422 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.924;LDAF=0.1100;AVGPOST=0.9734;RSQ=0.9201;ERATE=0.0037;THETA=0.0033;AC=240;AN=2184 GT:DS:GL:BD 0.10989011 0 1 104737505 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0032;AVGPOST=0.9995;RSQ=0.9278;ERATE=0.0003;THETA=0.0084;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104737630 . TC T 339 PASS INDEL;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104737815 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0992;AVGPOST=0.9988;RSQ=0.9953;ERATE=0.0004;THETA=0.0033;AC=217;AN=2184 GT:DS:GL:BD 0.09935898 0 1 104737829 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6229;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104737857 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0984;AVGPOST=0.9976;RSQ=0.9924;ERATE=0.0004;THETA=0.0056;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 104737864 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.954;LDAF=0.0879;AVGPOST=0.9928;RSQ=0.9753;ERATE=0.0004;THETA=0.0007;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 104737887 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.913;LDAF=0.1005;AVGPOST=0.9757;RSQ=0.9207;ERATE=0.0044;THETA=0.0007;AC=211;AN=2184 GT:DS:GL:BD 0.09661172 0 1 104737891 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0040;AVGPOST=0.9982;RSQ=0.7992;ERATE=0.0004;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104737933 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.894;LDAF=0.0158;AVGPOST=0.9976;RSQ=0.9471;ERATE=0.0004;THETA=0.0046;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 104737976 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5134;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104738050 . C CTT 78 PASS INDEL;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5869;ERATE=0.0003;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104738061 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7359;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104738062 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6762;ERATE=0.0005;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104738153 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5122;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104738154 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.746;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6658;ERATE=0.0004;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104738173 . AAAC A 240 PASS INDEL;BAVGPOST=0.995;BRSQ=0.742;LDAF=0.0133;AVGPOST=0.9869;RSQ=0.6114;ERATE=0.0052;THETA=0.0022;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104738180 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0974;AVGPOST=0.9970;RSQ=0.9896;ERATE=0.0004;THETA=0.0040;AC=213;AN=2184 GT:DS:GL:BD 0.09752747 0 1 104738218 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.0976;AVGPOST=0.9989;RSQ=0.9959;ERATE=0.0004;THETA=0.0046;AC=214;AN=2184 GT:DS:GL:BD 0.09798535 0 1 104738292 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0049;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104738329 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.973;LDAF=0.1069;AVGPOST=0.9896;RSQ=0.9676;ERATE=0.0026;THETA=0.0091;AC=230;AN=2184 GT:DS:GL:BD 0.10531136 0 1 104738462 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.875;LDAF=0.0145;AVGPOST=0.9956;RSQ=0.8845;ERATE=0.0004;THETA=0.0009;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104738524 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0088;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104738576 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.5441;ERATE=0.0003;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104738779 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.888;LDAF=0.1122;AVGPOST=0.9689;RSQ=0.9096;ERATE=0.0070;THETA=0.0033;AC=239;AN=2184 GT:DS:GL:BD 0.10943224 0 1 104738781 rs111514408 C CA 41118 PASS INDEL;BAVGPOST=0.939;BRSQ=0.914;LDAF=0.5700;AVGPOST=0.9450;RSQ=0.9337;ERATE=0.0006;THETA=0.0006;AC=1252;AN=2184 GT:DS:GL:BD 0.57326007 1 1 104738818 . A AC 7163 PASS INDEL;BAVGPOST=0.934;BRSQ=0.895;LDAF=0.5008;AVGPOST=0.9295;RSQ=0.9135;ERATE=0.0006;THETA=0.0011;AC=1104;AN=2184 GT:DS:GL:BD 0.50549453 1 1 104738820 . A AC 5069 PASS INDEL;BAVGPOST=0.935;BRSQ=0.896;LDAF=0.5012;AVGPOST=0.9335;RSQ=0.9189;ERATE=0.0005;THETA=0.0016;AC=1102;AN=2184 GT:DS:GL:BD 0.50457877 1 1 104738821 . A AC 5057 PASS INDEL;BAVGPOST=0.930;BRSQ=0.888;LDAF=0.5004;AVGPOST=0.9265;RSQ=0.9098;ERATE=0.0012;THETA=0.0128;AC=1102;AN=2184 GT:DS:GL:BD 0.50457877 1 1 104738822 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.925;LDAF=0.0873;AVGPOST=0.9798;RSQ=0.9272;ERATE=0.0015;THETA=0.0059;AC=189;AN=2184 GT:DS:GL:BD 0.08653846 0 1 104738834 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.930;LDAF=0.0830;AVGPOST=0.9869;RSQ=0.9514;ERATE=0.0004;THETA=0.0043;AC=185;AN=2184 GT:DS:GL:BD 0.08470696 0 1 104738837 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.688;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5763;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104738869 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.750;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.5943;ERATE=0.0006;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104738881 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0049;AVGPOST=0.9993;RSQ=0.9337;ERATE=0.0004;THETA=0.0030;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104738885 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4655;ERATE=0.0004;THETA=0.0046;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104738968 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.965;LDAF=0.0971;AVGPOST=0.9943;RSQ=0.9815;ERATE=0.0004;THETA=0.0061;AC=212;AN=2184 GT:DS:GL:BD 0.09706960 0 1 104738984 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4488;ERATE=0.0005;THETA=0.0043;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104738991 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.979;LDAF=0.0444;AVGPOST=0.9947;RSQ=0.9570;ERATE=0.0004;THETA=0.0026;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 104739025 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0032;AVGPOST=0.9972;RSQ=0.6853;ERATE=0.0005;THETA=0.0093;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104739064 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.937;LDAF=0.0952;AVGPOST=0.9913;RSQ=0.9726;ERATE=0.0005;THETA=0.0014;AC=208;AN=2184 GT:DS:GL:BD 0.09523810 0 1 104739065 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0037;AVGPOST=0.9986;RSQ=0.8290;ERATE=0.0004;THETA=0.0037;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104739084 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.978;LDAF=0.0971;AVGPOST=0.9940;RSQ=0.9798;ERATE=0.0006;THETA=0.0084;AC=213;AN=2184 GT:DS:GL:BD 0.09752747 0 1 104739134 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0020;AVGPOST=0.9994;RSQ=0.8663;ERATE=0.0003;THETA=0.0069;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104739156 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4959;ERATE=0.0004;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104739185 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.944;LDAF=0.0866;AVGPOST=0.9894;RSQ=0.9647;ERATE=0.0005;THETA=0.0013;AC=191;AN=2184 GT:DS:GL:BD 0.08745421 0 1 104739196 . TAA T 323 PASS INDEL;BAVGPOST=0.963;BRSQ=0.672;LDAF=0.0357;AVGPOST=0.9796;RSQ=0.8095;ERATE=0.0003;THETA=0.0008;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 104739198 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.945;LDAF=0.0879;AVGPOST=0.9904;RSQ=0.9682;ERATE=0.0005;THETA=0.0010;AC=191;AN=2184 GT:DS:GL:BD 0.08745421 0 1 104739200 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0004;THETA=0.0113;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104739213 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0976;AVGPOST=0.9970;RSQ=0.9893;ERATE=0.0003;THETA=0.0051;AC=214;AN=2184 GT:DS:GL:BD 0.09798535 0 1 104739387 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.789;LDAF=0.0412;AVGPOST=0.9793;RSQ=0.8058;ERATE=0.0014;THETA=0.0006;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 104739542 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6216;ERATE=0.0008;THETA=0.0065;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104739545 rs59373689 GA G 1573 PASS INDEL;BAVGPOST=0.948;BRSQ=0.614;LDAF=0.0885;AVGPOST=0.9183;RSQ=0.6042;ERATE=0.0161;THETA=0.0057;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 104739698 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0984;AVGPOST=0.9974;RSQ=0.9904;ERATE=0.0007;THETA=0.0011;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 104739784 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.933;LDAF=0.1145;AVGPOST=0.9739;RSQ=0.9254;ERATE=0.0050;THETA=0.0054;AC=244;AN=2184 GT:DS:GL:BD 0.11172161 0 1 104739996 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.946;BRSQ=0.910;LDAF=0.5619;AVGPOST=0.9351;RSQ=0.9130;ERATE=0.0040;THETA=0.0032;AC=1254;AN=2184 GT:DS:GL:BD 0.57417583 1 1 104740019 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0980;AVGPOST=0.9968;RSQ=0.9887;ERATE=0.0004;THETA=0.0025;AC=214;AN=2184 GT:DS:GL:BD 0.09798535 0 1 104740097 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.751;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6075;ERATE=0.0003;THETA=0.0074;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104740176 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.938;LDAF=0.0892;AVGPOST=0.9901;RSQ=0.9664;ERATE=0.0004;THETA=0.0006;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 104740358 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.937;LDAF=0.0809;AVGPOST=0.9888;RSQ=0.9580;ERATE=0.0004;THETA=0.0016;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 104740371 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.936;LDAF=0.0809;AVGPOST=0.9889;RSQ=0.9591;ERATE=0.0003;THETA=0.0005;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 104740375 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.935;LDAF=0.0818;AVGPOST=0.9876;RSQ=0.9523;ERATE=0.0004;THETA=0.0045;AC=179;AN=2184 GT:DS:GL:BD 0.08195971 0 1 104740392 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0043;AVGPOST=0.9975;RSQ=0.7791;ERATE=0.0006;THETA=0.0021;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104740426 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.733;LDAF=0.0039;AVGPOST=0.9971;RSQ=0.7236;ERATE=0.0004;THETA=0.0099;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104740448 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.699;LDAF=0.0059;AVGPOST=0.9974;RSQ=0.8380;ERATE=0.0004;THETA=0.0012;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104740450 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.953;LDAF=0.0964;AVGPOST=0.9845;RSQ=0.9490;ERATE=0.0008;THETA=0.0025;AC=205;AN=2184 GT:DS:GL:BD 0.09386447 0 1 104740451 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.641;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7205;ERATE=0.0005;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104740490 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.726;LDAF=0.0025;AVGPOST=0.9988;RSQ=0.8092;ERATE=0.0003;THETA=0.0048;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104740560 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7113;ERATE=0.0007;THETA=0.0020;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104740579 . GA G 371 PASS INDEL;BAVGPOST=0.948;BRSQ=0.483;LDAF=0.0667;AVGPOST=0.9243;RSQ=0.5061;ERATE=0.0218;THETA=0.0057;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 104740631 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.813;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5465;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104740755 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0004;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104740773 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5548;ERATE=0.0004;THETA=0.0066;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104740870 rs74162251 C CA 3048 PASS INDEL;BAVGPOST=0.731;BRSQ=0.460;LDAF=0.2879;AVGPOST=0.7807;RSQ=0.6379;ERATE=0.0145;THETA=0.0045;AC=551;AN=2184 GT:DS:GL:BD 0.25228938 0 1 104740992 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104741030 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0034;AVGPOST=0.9978;RSQ=0.7253;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104741059 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0069;AVGPOST=0.9985;RSQ=0.9175;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104741120 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104741148 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.834;LDAF=0.0048;AVGPOST=0.9967;RSQ=0.7614;ERATE=0.0007;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104741195 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9460;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104741196 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0068;AVGPOST=0.9992;RSQ=0.9520;ERATE=0.0004;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104741230 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.494;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4356;ERATE=0.0007;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104741252 . TATAG T 32225 PASS INDEL;BAVGPOST=0.988;BRSQ=0.975;LDAF=0.2729;AVGPOST=0.9906;RSQ=0.9819;ERATE=0.0008;THETA=0.0004;AC=597;AN=2184 GT:DS:GL:BD 0.27335164 0 1 104741281 . G GTA 1293 PASS INDEL;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0073;AVGPOST=0.9982;RSQ=0.8985;ERATE=0.0004;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104741308 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0146;AVGPOST=0.9992;RSQ=0.9765;ERATE=0.0003;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 104741412 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0043;AVGPOST=0.9984;RSQ=0.8357;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104741432 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1193;AVGPOST=0.9971;RSQ=0.9895;ERATE=0.0004;THETA=0.0006;AC=260;AN=2184 GT:DS:GL:BD 0.11904762 0 1 104741443 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0101;AVGPOST=0.9997;RSQ=0.9869;ERATE=0.0004;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104741444 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.744;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4524;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104741474 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0022;AVGPOST=0.9986;RSQ=0.7298;ERATE=0.0012;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104741506 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0076;AVGPOST=0.9994;RSQ=0.9529;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104741565 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2825;AVGPOST=0.9975;RSQ=0.9952;ERATE=0.0005;THETA=0.0004;AC=617;AN=2184 GT:DS:GL:BD 0.28250915 0 1 104741656 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.2819;AVGPOST=0.9953;RSQ=0.9911;ERATE=0.0006;THETA=0.0005;AC=617;AN=2184 GT:DS:GL:BD 0.28250915 0 1 104741711 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.987;LDAF=0.0128;AVGPOST=0.9993;RSQ=0.9773;ERATE=0.0004;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104741898 . ATG A 53 PASS INDEL;BAVGPOST=0.994;BRSQ=0.675;LDAF=0.0121;AVGPOST=0.9873;RSQ=0.5518;ERATE=0.0058;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104741926 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0100;AVGPOST=0.9995;RSQ=0.9799;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104741988 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4803;AVGPOST=0.9962;RSQ=0.9942;ERATE=0.0004;THETA=0.0017;AC=1048;AN=2184 GT:DS:GL:BD 0.47985348 0 1 104742090 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8433;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104742092 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6872;ERATE=0.0003;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104742106 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0053;AVGPOST=0.9990;RSQ=0.9306;ERATE=0.0004;THETA=0.0010;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104742175 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0096;AVGPOST=0.9998;RSQ=0.9911;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104742226 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0100;AVGPOST=0.9998;RSQ=0.9903;ERATE=0.0003;THETA=0.0010;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104742416 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7494;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104742432 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104742491 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8741;ERATE=0.0014;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104742515 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0021;AVGPOST=0.9991;RSQ=0.8170;ERATE=0.0004;THETA=0.0023;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104742591 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0150;AVGPOST=0.9982;RSQ=0.9555;ERATE=0.0004;THETA=0.0014;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 104742668 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104742712 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5650;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104742871 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8864;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104743204 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0042;AVGPOST=0.9990;RSQ=0.8959;ERATE=0.0003;THETA=0.0013;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104743475 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9167;ERATE=0.0004;THETA=0.0052;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104743508 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104743520 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1098;AVGPOST=0.9977;RSQ=0.9905;ERATE=0.0004;THETA=0.0084;AC=238;AN=2184 GT:DS:GL:BD 0.10897436 0 1 104743538 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0061;AVGPOST=0.9998;RSQ=0.9819;ERATE=0.0004;THETA=0.0058;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104743600 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0015;AVGPOST=0.9992;RSQ=0.7878;ERATE=0.0004;THETA=0.0051;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104743645 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9787;ERATE=0.0003;THETA=0.0011;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104743679 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0071;AVGPOST=0.9973;RSQ=0.8437;ERATE=0.0005;THETA=0.0070;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104743733 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0056;AVGPOST=0.9987;RSQ=0.9015;ERATE=0.0003;THETA=0.0054;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104743748 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6872;ERATE=0.0004;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104743792 . CA C 28 PASS INDEL;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6150;ERATE=0.0007;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104743906 rs72115730 TA T 141 PASS INDEL;BAVGPOST=0.997;BRSQ=0.447;LDAF=0.0027;AVGPOST=0.9966;RSQ=0.5046;ERATE=0.0008;THETA=0.0109;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104743916 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0105;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104743958 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.792;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8715;ERATE=0.0004;THETA=0.0127;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104743959 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0015;AVGPOST=0.9991;RSQ=0.7539;ERATE=0.0004;THETA=0.0044;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104744007 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0004;THETA=0.0039;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104744019 . T TA 2471 PASS INDEL;BAVGPOST=0.986;BRSQ=0.793;LDAF=0.0285;AVGPOST=0.9823;RSQ=0.7713;ERATE=0.0004;THETA=0.0065;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 104744041 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.942;LDAF=0.0115;AVGPOST=0.9981;RSQ=0.9278;ERATE=0.0003;THETA=0.0076;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104744164 . TCAAA T 663 PASS INDEL;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0045;AVGPOST=0.9982;RSQ=0.8579;ERATE=0.0004;THETA=0.0122;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104744352 . TTAG T 162 PASS INDEL;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5675;ERATE=0.0005;THETA=0.0058;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104744373 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0004;THETA=0.0130;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104744450 . AT A 153 PASS INDEL;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7311;ERATE=0.0010;THETA=0.0068;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104744525 . GACCT G 328 PASS INDEL;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0028;AVGPOST=0.9983;RSQ=0.7528;ERATE=0.0016;THETA=0.0133;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104744529 rs67801003 CCTT C 22611 PASS INDEL;BAVGPOST=0.983;BRSQ=0.943;LDAF=0.0879;AVGPOST=0.9856;RSQ=0.9508;ERATE=0.0004;THETA=0.0096;AC=186;AN=2184 GT:DS:GL:BD 0.08516484 0 1 104744531 . CTT C 1010 PASS INDEL;BAVGPOST=0.971;BRSQ=0.867;LDAF=0.0664;AVGPOST=0.9788;RSQ=0.8950;ERATE=0.0005;THETA=0.0010;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 104744535 . ATT A 215 PASS INDEL;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8757;ERATE=0.0011;THETA=0.0036;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104744538 . GT G 93 PASS INDEL;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0006;AVGPOST=0.9991;RSQ=0.3531;ERATE=0.0004;THETA=0.0097;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104744561 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8795;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104744644 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104744664 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0040;AVGPOST=0.9989;RSQ=0.8793;ERATE=0.0008;THETA=0.0134;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104744696 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0059;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104744698 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0032;AVGPOST=0.9987;RSQ=0.8504;ERATE=0.0012;THETA=0.0045;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104744710 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.947;LDAF=0.0254;AVGPOST=0.9965;RSQ=0.9503;ERATE=0.0006;THETA=0.0030;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 104744777 . C CAT 33 PASS INDEL;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104744778 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0034;AVGPOST=0.9985;RSQ=0.8282;ERATE=0.0009;THETA=0.0055;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104744804 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9359;ERATE=0.0004;THETA=0.0062;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104744824 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9230;ERATE=0.0003;THETA=0.0054;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104744858 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.763;LDAF=0.0035;AVGPOST=0.9983;RSQ=0.7792;ERATE=0.0004;THETA=0.0084;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104745221 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9508;ERATE=0.0004;THETA=0.0112;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104745364 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9046;ERATE=0.0004;THETA=0.0137;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104745433 . ACT A 1049 PASS INDEL;BAVGPOST=0.998;BRSQ=0.816;LDAF=0.0064;AVGPOST=0.9981;RSQ=0.8667;ERATE=0.0004;THETA=0.0039;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104745474 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9019;ERATE=0.0003;THETA=0.0093;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104745487 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.713;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6079;ERATE=0.0005;THETA=0.0144;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104745511 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.901;LDAF=0.0029;AVGPOST=0.9991;RSQ=0.8683;ERATE=0.0003;THETA=0.0225;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104745519 . TG T 80 PASS INDEL;BAVGPOST=0.973;BRSQ=0.380;LDAF=0.0376;AVGPOST=0.9468;RSQ=0.3952;ERATE=0.0069;THETA=0.0083;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 104745539 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.953;LDAF=0.1173;AVGPOST=0.9935;RSQ=0.9746;ERATE=0.0011;THETA=0.0005;AC=257;AN=2184 GT:DS:GL:BD 0.11767399 0 1 104745571 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.979;LDAF=0.1154;AVGPOST=0.9963;RSQ=0.9861;ERATE=0.0004;THETA=0.0043;AC=252;AN=2184 GT:DS:GL:BD 0.11538462 0 1 104745676 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0251;AVGPOST=0.9989;RSQ=0.9808;ERATE=0.0005;THETA=0.0010;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 104745731 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1403;AVGPOST=0.9963;RSQ=0.9868;ERATE=0.0005;THETA=0.0017;AC=307;AN=2184 GT:DS:GL:BD 0.14056776 0 1 104745768 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.983;LDAF=0.0283;AVGPOST=0.9939;RSQ=0.9145;ERATE=0.0008;THETA=0.0025;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 104745932 . AC A 1044 PASS INDEL;BAVGPOST=0.994;BRSQ=0.931;LDAF=0.0325;AVGPOST=0.9856;RSQ=0.8293;ERATE=0.0019;THETA=0.0025;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 104745944 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0042;AVGPOST=0.9990;RSQ=0.9014;ERATE=0.0003;THETA=0.0022;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104746023 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.663;LDAF=0.0104;AVGPOST=0.9914;RSQ=0.6509;ERATE=0.0008;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104746124 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.974;LDAF=0.0272;AVGPOST=0.9969;RSQ=0.9581;ERATE=0.0005;THETA=0.0006;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 104746174 . GAAAA G 173 PASS INDEL;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5763;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104746179 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5900;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104746204 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.4251;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104746273 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0125;AVGPOST=0.9997;RSQ=0.9903;ERATE=0.0003;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104746284 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6895;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104746309 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.708;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5836;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104746486 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0066;AVGPOST=0.9989;RSQ=0.9307;ERATE=0.0004;THETA=0.0010;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104746653 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.671;LDAF=0.0180;AVGPOST=0.9851;RSQ=0.6601;ERATE=0.0013;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104746767 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0384;AVGPOST=0.9988;RSQ=0.9861;ERATE=0.0003;THETA=0.0004;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 104746797 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.5067;ERATE=0.0008;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104746800 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0153;AVGPOST=0.9994;RSQ=0.9826;ERATE=0.0003;THETA=0.0004;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 104746994 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0375;AVGPOST=0.9999;RSQ=0.9983;ERATE=0.0003;THETA=0.0009;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 104747045 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5273;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104747096 . AAGG A 38 PASS INDEL;BAVGPOST=0.997;BRSQ=0.636;LDAF=0.0059;AVGPOST=0.9931;RSQ=0.5151;ERATE=0.0022;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104747099 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.5396;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104747168 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0048;AVGPOST=0.9996;RSQ=0.9597;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104747262 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4102;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104747388 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0258;AVGPOST=0.9996;RSQ=0.9928;ERATE=0.0004;THETA=0.0008;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 104747441 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6555;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104747519 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0270;AVGPOST=0.9982;RSQ=0.9777;ERATE=0.0005;THETA=0.0003;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 104747652 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104747744 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0220;AVGPOST=0.9999;RSQ=0.9982;ERATE=0.0003;THETA=0.0005;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 104747865 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.934;LDAF=0.0090;AVGPOST=0.9983;RSQ=0.9201;ERATE=0.0005;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104747910 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.0997;AVGPOST=0.9978;RSQ=0.9897;ERATE=0.0006;THETA=0.0007;AC=217;AN=2184 GT:DS:GL:BD 0.09935898 0 1 104748035 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.844;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8439;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104748036 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.936;LDAF=0.0148;AVGPOST=0.9945;RSQ=0.8656;ERATE=0.0004;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104748037 . GT G 159 PASS INDEL;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0034;AVGPOST=0.9984;RSQ=0.8020;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104748087 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.703;LDAF=0.0033;AVGPOST=0.9975;RSQ=0.6959;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104748135 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0043;AVGPOST=0.9975;RSQ=0.7468;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104748163 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.499;LDAF=0.0024;AVGPOST=0.9971;RSQ=0.4552;ERATE=0.0008;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104748201 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0031;AVGPOST=0.9986;RSQ=0.8061;ERATE=0.0006;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104748270 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.4511;AVGPOST=0.9959;RSQ=0.9939;ERATE=0.0004;THETA=0.0003;AC=984;AN=2184 GT:DS:GL:BD 0.45054945 0 1 104748272 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0047;AVGPOST=0.9992;RSQ=0.9234;ERATE=0.0004;THETA=0.0053;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104748300 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0220;AVGPOST=0.9999;RSQ=0.9973;ERATE=0.0003;THETA=0.0009;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 104748401 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0220;AVGPOST=0.9999;RSQ=0.9973;ERATE=0.0003;THETA=0.0005;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 104748443 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104748542 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6023;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104748641 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0077;AVGPOST=0.9988;RSQ=0.9355;ERATE=0.0004;THETA=0.0020;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104748770 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104748799 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7414;ERATE=0.0003;THETA=0.0019;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104748802 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0050;AVGPOST=0.9987;RSQ=0.9038;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104748891 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4248;AVGPOST=0.9953;RSQ=0.9934;ERATE=0.0006;THETA=0.0005;AC=927;AN=2184 GT:DS:GL:BD 0.42445055 0 1 104748989 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0227;AVGPOST=0.9993;RSQ=0.9854;ERATE=0.0004;THETA=0.0007;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 104749089 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0219;AVGPOST=0.9997;RSQ=0.9945;ERATE=0.0003;THETA=0.0006;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 104749113 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0126;AVGPOST=0.9991;RSQ=0.9681;ERATE=0.0004;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104749166 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8656;ERATE=0.0004;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104749210 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7190;ERATE=0.0004;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104749330 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0049;AVGPOST=0.9992;RSQ=0.9231;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104749374 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0080;AVGPOST=0.9976;RSQ=0.8756;ERATE=0.0005;THETA=0.0012;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104749377 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.3531;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104749423 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.599;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.3411;ERATE=0.0007;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104749449 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0077;AVGPOST=0.9958;RSQ=0.8037;ERATE=0.0006;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104749468 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.813;LDAF=0.0220;AVGPOST=0.9976;RSQ=0.9496;ERATE=0.0005;THETA=0.0005;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 104749532 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.814;LDAF=0.0245;AVGPOST=0.9936;RSQ=0.9010;ERATE=0.0005;THETA=0.0014;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104749533 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.517;LDAF=0.0051;AVGPOST=0.9924;RSQ=0.4058;ERATE=0.0010;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104749563 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0048;AVGPOST=0.9984;RSQ=0.8809;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104749584 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9260;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104749594 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8246;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104749648 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9497;ERATE=0.0004;THETA=0.0022;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104749687 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5803;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104749744 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.756;LDAF=0.0029;AVGPOST=0.9981;RSQ=0.7454;ERATE=0.0006;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104749754 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0130;AVGPOST=0.9991;RSQ=0.9737;ERATE=0.0003;THETA=0.0006;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104749791 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0364;AVGPOST=0.9967;RSQ=0.9654;ERATE=0.0004;THETA=0.0008;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 104749858 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6737;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104749918 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0004;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104750045 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9431;ERATE=0.0003;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104750104 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9054;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104750123 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6019;ERATE=0.0003;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104750180 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5736;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104750209 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.530;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.3631;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104750364 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9993;RSQ=0.8764;ERATE=0.0004;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104750459 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9469;ERATE=0.0005;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104750497 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4128;AVGPOST=0.9966;RSQ=0.9956;ERATE=0.0008;THETA=0.0035;AC=898;AN=2184 GT:DS:GL:BD 0.41117215 0 1 104750531 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0220;AVGPOST=1.0000;RSQ=0.9991;ERATE=0.0003;THETA=0.0005;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 104750656 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104750677 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0018;AVGPOST=0.9997;RSQ=0.9323;ERATE=0.0003;THETA=0.0048;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104750692 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7234;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104750724 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0009;AVGPOST=0.9988;RSQ=0.4319;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104750814 rs59039648 TG T 2972 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0279;AVGPOST=0.9977;RSQ=0.9669;ERATE=0.0005;THETA=0.0005;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 104750922 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5230;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104750950 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.963;LDAF=0.4200;AVGPOST=0.9817;RSQ=0.9748;ERATE=0.0008;THETA=0.0004;AC=926;AN=2184 GT:DS:GL:BD 0.42399266 0 1 104750959 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.972;LDAF=0.4182;AVGPOST=0.9781;RSQ=0.9694;ERATE=0.0014;THETA=0.0006;AC=921;AN=2184 GT:DS:GL:BD 0.42170331 0 1 104750973 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7527;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104751040 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0048;AVGPOST=0.9990;RSQ=0.9162;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104751049 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1061;AVGPOST=0.9986;RSQ=0.9946;ERATE=0.0004;THETA=0.0005;AC=231;AN=2184 GT:DS:GL:BD 0.10576923 0 1 104751105 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9385;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104751154 . CAAAT C 66 PASS INDEL;BAVGPOST=0.999;BRSQ=0.692;LDAF=0.0019;AVGPOST=0.9978;RSQ=0.4408;ERATE=0.0006;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104751154 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0032;AVGPOST=0.9978;RSQ=0.7267;ERATE=0.0003;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104751328 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.879;LDAF=0.0111;AVGPOST=0.9988;RSQ=0.9520;ERATE=0.0004;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104751394 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5366;AVGPOST=0.9982;RSQ=0.9972;ERATE=0.0006;THETA=0.0003;AC=1172;AN=2184 GT:DS:GL:BD 0.53663003 1 1 104751399 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0303;AVGPOST=0.9995;RSQ=0.9935;ERATE=0.0004;THETA=0.0004;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 104751408 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6453;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104751416 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5155;AVGPOST=0.9984;RSQ=0.9975;ERATE=0.0005;THETA=0.0005;AC=1126;AN=2184 GT:DS:GL:BD 0.51556778 1 1 104751474 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6675;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104751590 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5365;AVGPOST=0.9987;RSQ=0.9980;ERATE=0.0004;THETA=0.0003;AC=1172;AN=2184 GT:DS:GL:BD 0.53663003 1 1 104751641 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1058;AVGPOST=0.9991;RSQ=0.9965;ERATE=0.0004;THETA=0.0004;AC=231;AN=2184 GT:DS:GL:BD 0.10576923 0 1 104751643 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104751680 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104751760 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.786;LDAF=0.0051;AVGPOST=0.9987;RSQ=0.8983;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104751816 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104751828 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.4319;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104751993 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5181;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104752090 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2030;AVGPOST=0.9958;RSQ=0.9913;ERATE=0.0004;THETA=0.0003;AC=443;AN=2184 GT:DS:GL:BD 0.20283882 0 1 104752095 . AT A 14 PASS INDEL;BAVGPOST=0.991;BRSQ=0.457;LDAF=0.0097;AVGPOST=0.9912;RSQ=0.6428;ERATE=0.0013;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104752122 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5154;AVGPOST=0.9967;RSQ=0.9952;ERATE=0.0008;THETA=0.0009;AC=1128;AN=2184 GT:DS:GL:BD 0.51648355 1 1 104752141 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.4626;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104752160 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0044;AVGPOST=0.9994;RSQ=0.9322;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104752273 . CT C 5104 PASS INDEL;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0389;AVGPOST=0.9975;RSQ=0.9774;ERATE=0.0004;THETA=0.0003;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 104752282 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.767;LDAF=0.0039;AVGPOST=0.9991;RSQ=0.8989;ERATE=0.0005;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104752295 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.883;LDAF=0.0062;AVGPOST=0.9980;RSQ=0.8771;ERATE=0.0005;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104752323 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.746;LDAF=0.0005;AVGPOST=0.9994;RSQ=0.5104;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104752327 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.0269;AVGPOST=0.9990;RSQ=0.9861;ERATE=0.0003;THETA=0.0006;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 104752411 . T TGAGA 91 PASS INDEL;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6786;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104752643 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.628;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5968;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104752715 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9654;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104752766 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104752807 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0044;AVGPOST=0.9990;RSQ=0.9110;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104752841 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0043;AVGPOST=0.9990;RSQ=0.9079;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104752931 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6941;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104753312 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1842;AVGPOST=0.9988;RSQ=0.9967;ERATE=0.0004;THETA=0.0006;AC=403;AN=2184 GT:DS:GL:BD 0.18452381 0 1 104753357 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6630;ERATE=0.0004;THETA=0.0019;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104753365 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.952;BRSQ=0.943;LDAF=0.5080;AVGPOST=0.9498;RSQ=0.9406;ERATE=0.0110;THETA=0.0004;AC=1118;AN=2184 GT:DS:GL:BD 0.51190478 1 1 104753464 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0032;AVGPOST=0.9986;RSQ=0.8243;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104753545 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0044;AVGPOST=0.9991;RSQ=0.9038;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104753563 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1056;AVGPOST=0.9998;RSQ=0.9990;ERATE=0.0003;THETA=0.0003;AC=231;AN=2184 GT:DS:GL:BD 0.10576923 0 1 104753615 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6172;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104753705 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9294;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104753776 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7871;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104753791 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5811;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104753799 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104753977 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.7557;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104754016 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1824;AVGPOST=0.9982;RSQ=0.9955;ERATE=0.0003;THETA=0.0014;AC=397;AN=2184 GT:DS:GL:BD 0.18177655 0 1 104754017 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0306;AVGPOST=0.9992;RSQ=0.9913;ERATE=0.0003;THETA=0.0004;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 104754030 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9764;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104754078 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.962;LDAF=0.0285;AVGPOST=0.9989;RSQ=0.9857;ERATE=0.0003;THETA=0.0005;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 104754100 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104754117 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0063;AVGPOST=0.9991;RSQ=0.9376;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104754164 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0306;AVGPOST=0.9991;RSQ=0.9891;ERATE=0.0003;THETA=0.0004;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 104754189 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7301;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104754201 . CT C 228 PASS INDEL;BAVGPOST=0.999;BRSQ=0.685;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7459;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104754243 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104754271 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5385;AVGPOST=0.9954;RSQ=0.9937;ERATE=0.0008;THETA=0.0004;AC=1175;AN=2184 GT:DS:GL:BD 0.53800368 1 1 104754329 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6299;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104754363 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9269;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104754410 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0045;AVGPOST=0.9993;RSQ=0.9345;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104754442 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7885;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104754648 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9223;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104754662 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104754692 rs112378939 TTCA T 5608 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0410;AVGPOST=0.9991;RSQ=0.9898;ERATE=0.0004;THETA=0.0005;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 104754759 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104754797 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0303;AVGPOST=0.9997;RSQ=0.9961;ERATE=0.0003;THETA=0.0005;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 104754841 . ATTCTT A 311 PASS INDEL;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8839;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104754882 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0042;AVGPOST=0.9990;RSQ=0.9132;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104754918 . TA T 207 PASS INDEL;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5545;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104754976 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.1758;AVGPOST=0.9926;RSQ=0.9822;ERATE=0.0009;THETA=0.0004;AC=384;AN=2184 GT:DS:GL:BD 0.17582418 0 1 104754987 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7558;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104755007 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0755;AVGPOST=0.9999;RSQ=0.9994;ERATE=0.0003;THETA=0.0004;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 104755050 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7496;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104755068 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8735;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104755095 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7008;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104755099 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0041;AVGPOST=1.0000;RSQ=0.9947;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104755251 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.8893;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104755302 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0023;AVGPOST=0.9997;RSQ=0.9386;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104755387 . GTAAGTGTTCAGC G 1060 PASS INDEL;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7215;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104755486 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8724;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104755509 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0001;AVGPOST=0.9998;RSQ=0.1248;ERATE=0.0003;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104755540 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0056;AVGPOST=0.9992;RSQ=0.9382;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104755590 . T TA 174 PASS INDEL;BAVGPOST=0.822;BRSQ=0.112;LDAF=0.1567;AVGPOST=0.7772;RSQ=0.3193;ERATE=0.0120;THETA=0.0005;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 104755691 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.571;LDAF=0.0025;AVGPOST=0.9970;RSQ=0.5962;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104755743 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.967;LDAF=0.4495;AVGPOST=0.9862;RSQ=0.9820;ERATE=0.0004;THETA=0.0006;AC=986;AN=2184 GT:DS:GL:BD 0.45146519 0 1 104755793 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.976;LDAF=0.5259;AVGPOST=0.9869;RSQ=0.9831;ERATE=0.0005;THETA=0.0004;AC=1151;AN=2184 GT:DS:GL:BD 0.52701467 1 1 104755804 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4292;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104755891 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.922;LDAF=0.9208;AVGPOST=0.9782;RSQ=0.8912;ERATE=0.0006;THETA=0.0005;AC=2021;AN=2184 GT:DS:GL:BD 0.92536628 1 1 104755916 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0135;AVGPOST=0.9989;RSQ=0.9684;ERATE=0.0004;THETA=0.0010;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104755964 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.732;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.5544;ERATE=0.0007;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104756038 rs72424162 AAG A 1121 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0077;AVGPOST=0.9992;RSQ=0.9586;ERATE=0.0003;THETA=0.0045;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104756083 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7540;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104756169 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0591;AVGPOST=0.9979;RSQ=0.9871;ERATE=0.0003;THETA=0.0029;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 104756183 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5667;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104756228 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.5396;AVGPOST=0.9922;RSQ=0.9884;ERATE=0.0005;THETA=0.0005;AC=1178;AN=2184 GT:DS:GL:BD 0.53937727 1 1 104756295 . CA C 1092 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=0.9998;RSQ=0.9887;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104756359 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0036;AVGPOST=0.9983;RSQ=0.7998;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104756381 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0276;AVGPOST=0.9990;RSQ=0.9872;ERATE=0.0003;THETA=0.0016;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 104756384 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104756481 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0090;AVGPOST=0.9977;RSQ=0.9067;ERATE=0.0004;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104756635 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4009;ERATE=0.0009;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104756636 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.806;LDAF=0.0080;AVGPOST=0.9963;RSQ=0.8331;ERATE=0.0004;THETA=0.0009;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104756748 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9989;RSQ=0.9413;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104756907 . CAT C 314 PASS INDEL;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6429;ERATE=0.0005;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104757046 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0340;AVGPOST=0.9993;RSQ=0.9925;ERATE=0.0003;THETA=0.0005;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 104757063 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5817;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104757130 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0080;AVGPOST=0.9995;RSQ=0.9699;ERATE=0.0004;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104757159 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.722;LDAF=0.0045;AVGPOST=0.9981;RSQ=0.8131;ERATE=0.0006;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104757181 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0062;AVGPOST=0.9995;RSQ=0.9693;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104757205 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0066;AVGPOST=0.9986;RSQ=0.9027;ERATE=0.0005;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104757208 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0097;AVGPOST=0.9983;RSQ=0.9227;ERATE=0.0004;THETA=0.0009;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104757312 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0029;AVGPOST=0.9968;RSQ=0.5314;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104757369 rs34801469 C CT 475 PASS INDEL;BAVGPOST=0.574;BRSQ=0.188;LDAF=0.3427;AVGPOST=0.6724;RSQ=0.3816;ERATE=0.0231;THETA=0.0007;AC=556;AN=2184 GT:DS:GL:BD 0.25457877 0 1 104757558 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.733;LDAF=0.0065;AVGPOST=0.9949;RSQ=0.6575;ERATE=0.0013;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104757671 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.606;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104757779 . AT A 163 PASS INDEL;BAVGPOST=0.980;BRSQ=0.548;LDAF=0.0455;AVGPOST=0.9480;RSQ=0.5444;ERATE=0.0062;THETA=0.0008;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 104757912 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104758041 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5148;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104758062 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.766;LDAF=0.0024;AVGPOST=0.9981;RSQ=0.6744;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104758064 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.769;LDAF=0.0051;AVGPOST=0.9963;RSQ=0.6997;ERATE=0.0008;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104758074 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0017;AVGPOST=0.9980;RSQ=0.5381;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104758092 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.816;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7834;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104758101 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.5201;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104758134 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104758286 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104758289 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.966;LDAF=0.1774;AVGPOST=0.9917;RSQ=0.9790;ERATE=0.0008;THETA=0.0003;AC=383;AN=2184 GT:DS:GL:BD 0.17536630 0 1 104758375 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0021;AVGPOST=0.9991;RSQ=0.8166;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104758460 . CT C 119 PASS INDEL;BAVGPOST=0.999;BRSQ=0.745;LDAF=0.0022;AVGPOST=0.9978;RSQ=0.6126;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104758691 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.5226;AVGPOST=0.9966;RSQ=0.9947;ERATE=0.0005;THETA=0.0003;AC=1142;AN=2184 GT:DS:GL:BD 0.52289379 1 1 104758699 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7702;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104758786 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104758816 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7612;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104758827 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=1.0000;RSQ=0.9972;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104758878 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8118;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104758879 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0028;AVGPOST=0.9981;RSQ=0.7206;ERATE=0.0008;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104759003 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0166;AVGPOST=0.9997;RSQ=0.9912;ERATE=0.0003;THETA=0.0011;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 104759089 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5368;AVGPOST=0.9966;RSQ=0.9942;ERATE=0.0010;THETA=0.0006;AC=1173;AN=2184 GT:DS:GL:BD 0.53708792 1 1 104759131 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6358;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104759232 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0018;AVGPOST=0.9997;RSQ=0.9344;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104759336 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0202;AVGPOST=0.9986;RSQ=0.9754;ERATE=0.0003;THETA=0.0005;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 104759381 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0086;AVGPOST=0.9993;RSQ=0.9649;ERATE=0.0005;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104759394 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=1.0000;RSQ=0.9972;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104759436 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0084;AVGPOST=0.9997;RSQ=0.9858;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104759458 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104759505 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104759680 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9618;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104759744 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9375;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104759753 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0039;AVGPOST=0.9989;RSQ=0.8922;ERATE=0.0007;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104759767 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.846;LDAF=0.0110;AVGPOST=0.9959;RSQ=0.8538;ERATE=0.0005;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104759802 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0029;AVGPOST=0.9992;RSQ=0.8990;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104759855 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5235;AVGPOST=0.9971;RSQ=0.9955;ERATE=0.0003;THETA=0.0005;AC=1144;AN=2184 GT:DS:GL:BD 0.52380955 1 1 104759873 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8475;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104759876 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.868;LDAF=0.0074;AVGPOST=0.9980;RSQ=0.8985;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104759877 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4403;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104759995 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0082;AVGPOST=0.9992;RSQ=0.9608;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104760015 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.772;LDAF=0.0048;AVGPOST=0.9960;RSQ=0.6685;ERATE=0.0021;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104760016 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0071;AVGPOST=0.9994;RSQ=0.9665;ERATE=0.0004;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104760021 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.4957;AVGPOST=0.9957;RSQ=0.9940;ERATE=0.0005;THETA=0.0021;AC=1081;AN=2184 GT:DS:GL:BD 0.49496338 0 1 104760210 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8711;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104760230 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.0278;AVGPOST=0.9990;RSQ=0.9837;ERATE=0.0005;THETA=0.0005;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 104760265 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1398;AVGPOST=0.9976;RSQ=0.9919;ERATE=0.0004;THETA=0.0005;AC=306;AN=2184 GT:DS:GL:BD 0.14010990 0 1 104760298 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.646;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4728;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104760321 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0255;AVGPOST=0.9990;RSQ=0.9846;ERATE=0.0003;THETA=0.0002;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 104760514 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.896;LDAF=0.0297;AVGPOST=0.9949;RSQ=0.9365;ERATE=0.0004;THETA=0.0008;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 104760516 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.816;LDAF=0.0032;AVGPOST=0.9989;RSQ=0.8490;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104760547 . A AAG 622 PASS INDEL;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0085;AVGPOST=0.9981;RSQ=0.9149;ERATE=0.0004;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104760548 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0036;AVGPOST=0.9996;RSQ=0.9579;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104760642 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0031;AVGPOST=0.9994;RSQ=0.9121;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104760693 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.745;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6141;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104760771 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8237;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104760772 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0534;AVGPOST=0.9991;RSQ=0.9933;ERATE=0.0003;THETA=0.0004;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 104760912 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.722;LDAF=0.0188;AVGPOST=0.9891;RSQ=0.7640;ERATE=0.0005;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104760935 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=0.9990;RSQ=0.9461;ERATE=0.0004;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104761021 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9364;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104761219 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0129;AVGPOST=0.9994;RSQ=0.9770;ERATE=0.0005;THETA=0.0008;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104761281 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9509;ERATE=0.0009;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104761342 . G GA 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7345;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104761387 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0048;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104761416 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0409;AVGPOST=0.9966;RSQ=0.9754;ERATE=0.0003;THETA=0.0012;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 104761600 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104761777 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.6896;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104761781 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.853;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7195;ERATE=0.0003;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104761801 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0004;THETA=0.0052;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104761852 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0747;AVGPOST=0.9980;RSQ=0.9914;ERATE=0.0004;THETA=0.0005;AC=162;AN=2184 GT:DS:GL:BD 0.07417583 0 1 104761853 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5142;ERATE=0.0005;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104761863 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0404;AVGPOST=0.9993;RSQ=0.9944;ERATE=0.0003;THETA=0.0008;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 104761888 . C CA 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5802;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104762053 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0061;AVGPOST=0.9993;RSQ=0.9490;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104762138 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0387;AVGPOST=0.9992;RSQ=0.9934;ERATE=0.0004;THETA=0.0005;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 104762201 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.5853;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104762246 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.7113;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104762299 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104762317 . TG T 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104762348 . TTCA T 68 PASS INDEL;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0004;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104762356 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.519;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5948;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104762366 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.7993;ERATE=0.0011;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104762376 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0031;AVGPOST=0.9985;RSQ=0.8528;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104762476 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0025;AVGPOST=0.9994;RSQ=0.9208;ERATE=0.0003;THETA=0.0019;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104762630 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0516;AVGPOST=0.9989;RSQ=0.9923;ERATE=0.0004;THETA=0.0008;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 104762678 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0015;AVGPOST=0.9992;RSQ=0.7665;ERATE=0.0005;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104762780 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9365;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104762840 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8381;ERATE=0.0007;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104762868 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0321;AVGPOST=0.9982;RSQ=0.9798;ERATE=0.0003;THETA=0.0006;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 104762959 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5464;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104763049 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.654;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5543;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104763148 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104763158 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0020;AVGPOST=0.9971;RSQ=0.4432;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104763201 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6343;ERATE=0.0004;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104763310 . TC T 455 PASS INDEL;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0019;AVGPOST=0.9992;RSQ=0.8422;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104763315 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8538;ERATE=0.0003;THETA=0.0028;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104763358 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6947;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104763506 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0125;AVGPOST=0.9997;RSQ=0.9893;ERATE=0.0004;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104763535 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0036;AVGPOST=0.9995;RSQ=0.9471;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104763542 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104763579 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.797;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7109;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104763665 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.7604;ERATE=0.0003;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104763712 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.879;LDAF=0.0060;AVGPOST=0.9984;RSQ=0.8832;ERATE=0.0005;THETA=0.0015;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104763743 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0048;AVGPOST=0.9989;RSQ=0.8915;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104763770 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.720;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5229;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104763779 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6691;ERATE=0.0005;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104763783 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.8306;AVGPOST=0.9954;RSQ=0.9874;ERATE=0.0004;THETA=0.0005;AC=1815;AN=2184 GT:DS:GL:BD 0.83104396 1 1 104763829 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7871;ERATE=0.0005;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104763935 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7478;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104764022 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0218;AVGPOST=0.9994;RSQ=0.9880;ERATE=0.0003;THETA=0.0040;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 104764033 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7658;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104764087 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.692;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6044;ERATE=0.0006;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104764146 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.950;LDAF=0.0130;AVGPOST=0.9992;RSQ=0.9722;ERATE=0.0004;THETA=0.0008;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104764179 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6809;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104764265 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0985;AVGPOST=0.9958;RSQ=0.9805;ERATE=0.0004;THETA=0.0006;AC=216;AN=2184 GT:DS:GL:BD 0.09890110 0 1 104764349 . GA G 268 PASS INDEL;BAVGPOST=0.999;BRSQ=0.817;LDAF=0.0035;AVGPOST=0.9970;RSQ=0.6389;ERATE=0.0006;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104764352 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0230;AVGPOST=0.9996;RSQ=0.9927;ERATE=0.0004;THETA=0.0003;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 104764481 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7132;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104764500 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8199;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104764568 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5470;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104764736 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0232;AVGPOST=0.9991;RSQ=0.9841;ERATE=0.0004;THETA=0.0003;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 104764814 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0049;AVGPOST=0.9988;RSQ=0.9053;ERATE=0.0004;THETA=0.0036;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104764858 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0356;AVGPOST=0.9995;RSQ=0.9942;ERATE=0.0004;THETA=0.0007;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 104764864 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8887;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104765003 rs68144212 C CT 75015 PASS INDEL;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.8181;AVGPOST=0.9936;RSQ=0.9832;ERATE=0.0006;THETA=0.0012;AC=1787;AN=2184 GT:DS:GL:BD 0.81822342 1 1 104765142 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2787;AVGPOST=0.9947;RSQ=0.9893;ERATE=0.0004;THETA=0.0003;AC=610;AN=2184 GT:DS:GL:BD 0.27930403 0 1 104765165 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9320;ERATE=0.0003;THETA=0.0027;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104765180 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5001;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104765252 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5921;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104765435 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0230;AVGPOST=0.9997;RSQ=0.9948;ERATE=0.0003;THETA=0.0004;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 104765515 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.6340;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104765529 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5809;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104765560 . T TTC 6135 PASS INDEL;BAVGPOST=0.989;BRSQ=0.954;LDAF=0.0922;AVGPOST=0.9865;RSQ=0.9453;ERATE=0.0007;THETA=0.0004;AC=198;AN=2184 GT:DS:GL:BD 0.09065934 0 1 104765599 rs61486090 T TC 6635 PASS INDEL;BAVGPOST=0.989;BRSQ=0.953;LDAF=0.0878;AVGPOST=0.9924;RSQ=0.9677;ERATE=0.0006;THETA=0.0005;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 104765600 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.904;LDAF=0.0786;AVGPOST=0.9885;RSQ=0.9414;ERATE=0.0008;THETA=0.0006;AC=173;AN=2184 GT:DS:GL:BD 0.07921246 0 1 104765601 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.832;LDAF=0.0391;AVGPOST=0.9890;RSQ=0.8875;ERATE=0.0017;THETA=0.0005;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 104765632 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.928;LDAF=0.7912;AVGPOST=0.9628;RSQ=0.9166;ERATE=0.0041;THETA=0.0003;AC=1741;AN=2184 GT:DS:GL:BD 0.79716116 1 1 104765663 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.662;LDAF=0.0033;AVGPOST=0.9984;RSQ=0.7697;ERATE=0.0006;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104765797 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.928;LDAF=0.0138;AVGPOST=0.9983;RSQ=0.9462;ERATE=0.0003;THETA=0.0030;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 104765800 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8019;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104765801 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7822;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104765879 . TA T 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.723;LDAF=0.0021;AVGPOST=0.9971;RSQ=0.4335;ERATE=0.0008;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104765938 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104766006 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.792;LDAF=0.0037;AVGPOST=0.9957;RSQ=0.5497;ERATE=0.0009;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104766051 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8411;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104766105 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.850;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.6878;ERATE=0.0005;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104766129 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.516;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.3909;ERATE=0.0005;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104766238 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.781;LDAF=0.0058;AVGPOST=0.9979;RSQ=0.8443;ERATE=0.0005;THETA=0.0023;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104766333 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.805;LDAF=0.0186;AVGPOST=0.9926;RSQ=0.8446;ERATE=0.0006;THETA=0.0052;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 104766406 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.686;LDAF=0.0098;AVGPOST=0.9942;RSQ=0.7808;ERATE=0.0008;THETA=0.0009;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104766445 . AGG A 912 PASS INDEL;BAVGPOST=0.987;BRSQ=0.479;LDAF=0.0162;AVGPOST=0.9866;RSQ=0.6425;ERATE=0.0008;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104766461 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.701;LDAF=0.0025;AVGPOST=0.9977;RSQ=0.6373;ERATE=0.0006;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104766499 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.688;LDAF=0.0010;AVGPOST=0.9987;RSQ=0.4800;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104766593 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.845;LDAF=0.0203;AVGPOST=0.9963;RSQ=0.9264;ERATE=0.0007;THETA=0.0012;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 104766606 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.949;BRSQ=0.610;LDAF=0.0775;AVGPOST=0.9365;RSQ=0.6850;ERATE=0.0024;THETA=0.0005;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 104766632 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.669;LDAF=0.0078;AVGPOST=0.9943;RSQ=0.7172;ERATE=0.0006;THETA=0.0055;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104766767 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.457;LDAF=0.0093;AVGPOST=0.9889;RSQ=0.5298;ERATE=0.0009;THETA=0.0057;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104766887 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.252;LDAF=0.0440;AVGPOST=0.9396;RSQ=0.4199;ERATE=0.0035;THETA=0.0007;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 104767050 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.936;LDAF=0.1691;AVGPOST=0.9667;RSQ=0.9104;ERATE=0.0014;THETA=0.0011;AC=360;AN=2184 GT:DS:GL:BD 0.16483517 0 1 104767169 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.625;LDAF=0.0072;AVGPOST=0.9881;RSQ=0.3247;ERATE=0.0015;THETA=0.0036;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104767317 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.431;LDAF=0.0199;AVGPOST=0.9838;RSQ=0.6517;ERATE=0.0010;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 104767351 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.579;LDAF=0.0052;AVGPOST=0.9959;RSQ=0.6755;ERATE=0.0008;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104767410 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.655;LDAF=0.0166;AVGPOST=0.9850;RSQ=0.6323;ERATE=0.0012;THETA=0.0009;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104767448 . A AT 2946 PASS INDEL;BAVGPOST=0.950;BRSQ=0.833;LDAF=0.2076;AVGPOST=0.8793;RSQ=0.6958;ERATE=0.0212;THETA=0.0011;AC=375;AN=2184 GT:DS:GL:BD 0.17170329 0 1 104767491 . T TA 5354 PASS INDEL;BAVGPOST=0.941;BRSQ=0.621;LDAF=0.0850;AVGPOST=0.9607;RSQ=0.8212;ERATE=0.0007;THETA=0.0004;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 104767494 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0100;AVGPOST=0.9983;RSQ=0.9307;ERATE=0.0004;THETA=0.0029;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104767592 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.9249;AVGPOST=0.9928;RSQ=0.9585;ERATE=0.0008;THETA=0.0008;AC=2023;AN=2184 GT:DS:GL:BD 0.92628205 1 1 104767607 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.622;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5938;ERATE=0.0004;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104767644 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.772;LDAF=0.0027;AVGPOST=0.9990;RSQ=0.8432;ERATE=0.0004;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104767680 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.917;LDAF=0.0085;AVGPOST=0.9988;RSQ=0.9341;ERATE=0.0005;THETA=0.0012;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104767697 . T TTTTG 4553 PASS INDEL;BAVGPOST=0.788;BRSQ=0.356;LDAF=0.2551;AVGPOST=0.7650;RSQ=0.4654;ERATE=0.0458;THETA=0.0042;AC=371;AN=2184 GT:DS:GL:BD 0.16987179 0 1 104767734 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.754;LDAF=0.0030;AVGPOST=0.9958;RSQ=0.4014;ERATE=0.0008;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104767743 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.485;LDAF=0.0036;AVGPOST=0.9943;RSQ=0.3453;ERATE=0.0007;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104767797 . TCTA T 67 PASS INDEL;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.4947;ERATE=0.0006;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104767935 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.672;LDAF=0.0043;AVGPOST=0.9954;RSQ=0.5805;ERATE=0.0007;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104767963 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.975;LDAF=0.9206;AVGPOST=0.9872;RSQ=0.9330;ERATE=0.0013;THETA=0.0009;AC=2019;AN=2184 GT:DS:GL:BD 0.92445058 1 1 104768035 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.973;LDAF=0.1818;AVGPOST=0.9797;RSQ=0.9480;ERATE=0.0007;THETA=0.0008;AC=400;AN=2184 GT:DS:GL:BD 0.18315019 0 1 104768044 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.938;BRSQ=0.720;LDAF=0.8542;AVGPOST=0.8984;RSQ=0.6856;ERATE=0.0232;THETA=0.0017;AC=1933;AN=2184 GT:DS:GL:BD 0.88507324 1 1 104768132 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.895;LDAF=0.0208;AVGPOST=0.9953;RSQ=0.9143;ERATE=0.0007;THETA=0.0014;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 104768139 . CA C 131 PASS INDEL;BAVGPOST=1.000;BRSQ=0.711;LDAF=0.0019;AVGPOST=0.9970;RSQ=0.2704;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104768200 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.977;LDAF=0.0391;AVGPOST=0.9968;RSQ=0.9681;ERATE=0.0005;THETA=0.0007;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 104768219 . TAGTG T 40 PASS INDEL;BAVGPOST=0.999;BRSQ=0.620;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7139;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104768282 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0041;AVGPOST=0.9991;RSQ=0.9177;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104768291 rs113085093 GGGGTGGATCCTGGGCTGCA G 3978 PASS INDEL;BAVGPOST=0.983;BRSQ=0.712;LDAF=0.0337;AVGPOST=0.9894;RSQ=0.8823;ERATE=0.0006;THETA=0.0015;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 104768628 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.7465;ERATE=0.0004;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104768715 rs57519477 ACT A 122 PASS INDEL;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0053;AVGPOST=0.9973;RSQ=0.8328;ERATE=0.0005;THETA=0.0016;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104768752 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5560;ERATE=0.0005;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104768753 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.643;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6520;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104768963 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.621;LDAF=0.0037;AVGPOST=0.9977;RSQ=0.7324;ERATE=0.0005;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104769103 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.751;LDAF=0.0104;AVGPOST=0.9947;RSQ=0.7824;ERATE=0.0008;THETA=0.0012;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104769134 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0045;AVGPOST=0.9980;RSQ=0.7956;ERATE=0.0006;THETA=0.0016;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104769178 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.488;LDAF=0.0031;AVGPOST=0.9958;RSQ=0.4590;ERATE=0.0006;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104769317 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7628;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104769352 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7454;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104769355 . TG T 7185 PASS INDEL;BAVGPOST=0.981;BRSQ=0.927;LDAF=0.1385;AVGPOST=0.9794;RSQ=0.9353;ERATE=0.0008;THETA=0.0020;AC=303;AN=2184 GT:DS:GL:BD 0.13873626 0 1 104769410 . GT G 78 PASS INDEL;BAVGPOST=0.908;BRSQ=0.374;LDAF=0.0733;AVGPOST=0.9368;RSQ=0.6743;ERATE=0.0014;THETA=0.0028;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 104769416 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5247;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104769724 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0203;AVGPOST=0.9991;RSQ=0.9805;ERATE=0.0004;THETA=0.0007;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 104769732 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.734;LDAF=0.0095;AVGPOST=0.9945;RSQ=0.7491;ERATE=0.0009;THETA=0.0032;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104769869 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3517;AVGPOST=0.9937;RSQ=0.9897;ERATE=0.0005;THETA=0.0007;AC=769;AN=2184 GT:DS:GL:BD 0.35210621 0 1 104769924 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4728;ERATE=0.0006;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104769980 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.991;LDAF=0.5513;AVGPOST=0.9925;RSQ=0.9891;ERATE=0.0007;THETA=0.0011;AC=1204;AN=2184 GT:DS:GL:BD 0.55128205 1 1 104770015 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0044;AVGPOST=0.9986;RSQ=0.8672;ERATE=0.0007;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104770120 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.864;LDAF=0.0210;AVGPOST=0.9960;RSQ=0.9176;ERATE=0.0005;THETA=0.0008;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 104770122 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.731;LDAF=0.0021;AVGPOST=0.9989;RSQ=0.7714;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104770141 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0058;AVGPOST=0.9995;RSQ=0.9610;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104770156 . C CT 1969 PASS INDEL;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0215;AVGPOST=0.9986;RSQ=0.9758;ERATE=0.0004;THETA=0.0025;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 104770250 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.683;LDAF=0.0033;AVGPOST=0.9974;RSQ=0.7174;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104770299 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5081;ERATE=0.0004;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104770436 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.747;LDAF=0.0041;AVGPOST=0.9970;RSQ=0.7160;ERATE=0.0004;THETA=0.0020;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104770496 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.736;LDAF=0.0037;AVGPOST=0.9969;RSQ=0.6542;ERATE=0.0010;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104770553 rs58913475 C CA 31563 PASS INDEL;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.2985;AVGPOST=0.9920;RSQ=0.9841;ERATE=0.0009;THETA=0.0008;AC=652;AN=2184 GT:DS:GL:BD 0.29853481 0 1 104770728 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0022;AVGPOST=0.9988;RSQ=0.7551;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104770864 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7879;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104770912 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8836;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104770996 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0231;AVGPOST=0.9968;RSQ=0.9467;ERATE=0.0006;THETA=0.0011;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104771020 rs61703480 AGCCCCCGCAGCAGT A 32530 PASS INDEL;BAVGPOST=0.908;BRSQ=0.848;LDAF=0.6033;AVGPOST=0.8905;RSQ=0.8422;ERATE=0.0097;THETA=0.0013;AC=1318;AN=2184 GT:DS:GL:BD 0.60347986 1 1 104771056 rs61703480 G GT 7445 PASS INDEL;BAVGPOST=0.742;BRSQ=0.562;LDAF=0.4439;AVGPOST=0.7095;RSQ=0.5456;ERATE=0.0311;THETA=0.0008;AC=983;AN=2184 GT:DS:GL:BD 0.45009157 0 1 104771069 . C CA 2633 PASS INDEL;BAVGPOST=0.781;BRSQ=0.593;LDAF=0.4663;AVGPOST=0.7409;RSQ=0.5529;ERATE=0.0256;THETA=0.0005;AC=934;AN=2184 GT:DS:GL:BD 0.42765567 0 1 104771072 . C CA 2311 PASS INDEL;BAVGPOST=0.788;BRSQ=0.609;LDAF=0.4505;AVGPOST=0.7812;RSQ=0.6344;ERATE=0.0146;THETA=0.0020;AC=924;AN=2184 GT:DS:GL:BD 0.42307693 0 1 104771074 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.694;LDAF=0.0099;AVGPOST=0.9919;RSQ=0.7039;ERATE=0.0006;THETA=0.0016;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104771107 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.410;LDAF=0.0046;AVGPOST=0.9942;RSQ=0.4469;ERATE=0.0011;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104771116 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.700;LDAF=0.0030;AVGPOST=0.9987;RSQ=0.8042;ERATE=0.0005;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104771136 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.633;LDAF=0.0064;AVGPOST=0.9913;RSQ=0.4757;ERATE=0.0011;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104771169 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.990;LDAF=0.2964;AVGPOST=0.9896;RSQ=0.9812;ERATE=0.0005;THETA=0.0010;AC=646;AN=2184 GT:DS:GL:BD 0.29578754 0 1 104771203 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0052;AVGPOST=0.9978;RSQ=0.8369;ERATE=0.0004;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104771228 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.655;LDAF=0.0016;AVGPOST=0.9976;RSQ=0.3883;ERATE=0.0006;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104771235 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.673;LDAF=0.0235;AVGPOST=0.9906;RSQ=0.8529;ERATE=0.0006;THETA=0.0004;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 104771345 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.847;BRSQ=0.611;LDAF=0.2979;AVGPOST=0.8101;RSQ=0.5896;ERATE=0.0560;THETA=0.0008;AC=572;AN=2184 GT:DS:GL:BD 0.26190478 0 1 104771348 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0186;AVGPOST=0.9983;RSQ=0.9639;ERATE=0.0005;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 104771363 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0282;AVGPOST=0.9969;RSQ=0.9581;ERATE=0.0005;THETA=0.0005;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 104771413 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0233;AVGPOST=0.9990;RSQ=0.9827;ERATE=0.0004;THETA=0.0027;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104771555 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0017;AVGPOST=0.9982;RSQ=0.5620;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104771569 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.919;LDAF=0.0235;AVGPOST=0.9985;RSQ=0.9740;ERATE=0.0003;THETA=0.0003;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104771634 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.943;LDAF=0.0304;AVGPOST=0.9978;RSQ=0.9698;ERATE=0.0003;THETA=0.0004;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 104771653 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.925;LDAF=0.0237;AVGPOST=0.9974;RSQ=0.9558;ERATE=0.0004;THETA=0.0004;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104771660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.925;LDAF=0.0239;AVGPOST=0.9973;RSQ=0.9571;ERATE=0.0005;THETA=0.0009;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 104771665 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7305;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104771754 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0376;AVGPOST=0.9995;RSQ=0.9945;ERATE=0.0004;THETA=0.0006;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 104771772 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0234;AVGPOST=0.9998;RSQ=0.9964;ERATE=0.0003;THETA=0.0004;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104771790 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0184;AVGPOST=0.9998;RSQ=0.9959;ERATE=0.0003;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 104771867 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5542;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104771876 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104772004 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9019;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104772139 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0233;AVGPOST=0.9998;RSQ=0.9964;ERATE=0.0003;THETA=0.0004;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104772302 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6803;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104772341 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0241;AVGPOST=0.9984;RSQ=0.9748;ERATE=0.0004;THETA=0.0005;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104772437 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0118;AVGPOST=0.9987;RSQ=0.9538;ERATE=0.0004;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104772557 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.897;LDAF=0.0124;AVGPOST=0.9989;RSQ=0.9613;ERATE=0.0004;THETA=0.0009;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104772669 rs34106910 GC G 27476 PASS INDEL;BAVGPOST=0.988;BRSQ=0.984;LDAF=0.6106;AVGPOST=0.9821;RSQ=0.9794;ERATE=0.0011;THETA=0.0005;AC=1333;AN=2184 GT:DS:GL:BD 0.61034799 1 1 104772838 . CA C 6744 PASS INDEL;BAVGPOST=0.947;BRSQ=0.924;LDAF=0.5741;AVGPOST=0.9262;RSQ=0.9149;ERATE=0.0064;THETA=0.0003;AC=1279;AN=2184 GT:DS:GL:BD 0.58562273 1 1 104772840 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.990;LDAF=0.3583;AVGPOST=0.9958;RSQ=0.9938;ERATE=0.0005;THETA=0.0005;AC=784;AN=2184 GT:DS:GL:BD 0.35897437 0 1 104772944 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.901;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7442;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104772977 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0030;AVGPOST=0.9975;RSQ=0.7001;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104772978 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0040;AVGPOST=0.9977;RSQ=0.7984;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104773069 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4835;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104773327 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7838;ERATE=0.0003;THETA=0.0032;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104773408 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9763;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104773478 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0058;AVGPOST=0.9965;RSQ=0.8102;ERATE=0.0004;THETA=0.0023;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104773517 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.586;LDAF=0.0096;AVGPOST=0.9871;RSQ=0.4857;ERATE=0.0028;THETA=0.0001;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104773590 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0028;AVGPOST=0.9980;RSQ=0.6788;ERATE=0.0004;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104773601 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0235;AVGPOST=0.9995;RSQ=0.9922;ERATE=0.0003;THETA=0.0005;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104773618 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.547;LDAF=0.0032;AVGPOST=0.9943;RSQ=0.3314;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104773670 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0377;AVGPOST=0.9996;RSQ=0.9957;ERATE=0.0003;THETA=0.0006;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 104773724 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1100;AVGPOST=0.9993;RSQ=0.9975;ERATE=0.0003;THETA=0.0005;AC=240;AN=2184 GT:DS:GL:BD 0.10989011 0 1 104773754 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0184;AVGPOST=0.9997;RSQ=0.9929;ERATE=0.0003;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 104773782 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6222;AVGPOST=0.9987;RSQ=0.9985;ERATE=0.0003;THETA=0.0005;AC=1360;AN=2184 GT:DS:GL:BD 0.62271065 1 1 104773793 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0235;AVGPOST=0.9996;RSQ=0.9928;ERATE=0.0003;THETA=0.0003;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104773800 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.7258;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104773802 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.680;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104773855 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8526;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104773894 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8259;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104773904 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.672;LDAF=0.0114;AVGPOST=0.9931;RSQ=0.7509;ERATE=0.0008;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104774270 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7078;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104774288 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.753;LDAF=0.0052;AVGPOST=0.9968;RSQ=0.7656;ERATE=0.0004;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104774332 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.646;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8552;ERATE=0.0003;THETA=0.0017;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104774407 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.956;LDAF=0.0176;AVGPOST=0.9992;RSQ=0.9796;ERATE=0.0003;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 104774516 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.982;LDAF=0.9137;AVGPOST=0.9936;RSQ=0.9689;ERATE=0.0004;THETA=0.0002;AC=1999;AN=2184 GT:DS:GL:BD 0.91529304 1 1 104774586 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.1339;AVGPOST=0.9961;RSQ=0.9867;ERATE=0.0004;THETA=0.0003;AC=291;AN=2184 GT:DS:GL:BD 0.13324176 0 1 104774651 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.890;LDAF=0.0141;AVGPOST=0.9968;RSQ=0.8969;ERATE=0.0004;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104774755 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0184;AVGPOST=0.9997;RSQ=0.9939;ERATE=0.0003;THETA=0.0006;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 104774756 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0031;AVGPOST=0.9969;RSQ=0.5629;ERATE=0.0007;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104774878 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0184;AVGPOST=0.9997;RSQ=0.9929;ERATE=0.0003;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 104774909 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6226;AVGPOST=0.9961;RSQ=0.9954;ERATE=0.0006;THETA=0.0005;AC=1360;AN=2184 GT:DS:GL:BD 0.62271065 1 1 104774954 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6177;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104774969 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.3575;AVGPOST=0.9941;RSQ=0.9917;ERATE=0.0011;THETA=0.0006;AC=779;AN=2184 GT:DS:GL:BD 0.35668498 0 1 104774973 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0057;AVGPOST=0.9987;RSQ=0.9078;ERATE=0.0003;THETA=0.0013;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104775012 . TG T 51 PASS INDEL;BAVGPOST=0.999;BRSQ=0.548;LDAF=0.0041;AVGPOST=0.9969;RSQ=0.7076;ERATE=0.0005;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104775099 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.800;LDAF=0.0036;AVGPOST=0.9986;RSQ=0.8312;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104775122 . G GT 16124 PASS INDEL;BAVGPOST=0.974;BRSQ=0.950;LDAF=0.3049;AVGPOST=0.9534;RSQ=0.9239;ERATE=0.0054;THETA=0.0003;AC=652;AN=2184 GT:DS:GL:BD 0.29853481 0 1 104775139 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.705;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6202;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104775202 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.977;LDAF=0.1067;AVGPOST=0.9886;RSQ=0.9562;ERATE=0.0012;THETA=0.0003;AC=229;AN=2184 GT:DS:GL:BD 0.10485348 0 1 104775287 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.971;LDAF=0.7816;AVGPOST=0.9895;RSQ=0.9786;ERATE=0.0006;THETA=0.0007;AC=1709;AN=2184 GT:DS:GL:BD 0.78250915 1 1 104775574 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9323;ERATE=0.0004;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104775608 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.753;LDAF=0.0020;AVGPOST=0.9991;RSQ=0.8027;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104775627 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0870;AVGPOST=0.9969;RSQ=0.9882;ERATE=0.0003;THETA=0.0004;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 104775749 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0869;AVGPOST=0.9982;RSQ=0.9925;ERATE=0.0004;THETA=0.0006;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 104775787 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0236;AVGPOST=0.9994;RSQ=0.9877;ERATE=0.0004;THETA=0.0007;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104775798 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6200;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104775950 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.965;LDAF=0.0298;AVGPOST=0.9987;RSQ=0.9833;ERATE=0.0003;THETA=0.0004;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 104776010 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0236;AVGPOST=0.9994;RSQ=0.9877;ERATE=0.0005;THETA=0.0003;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104776029 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0236;AVGPOST=0.9995;RSQ=0.9903;ERATE=0.0004;THETA=0.0018;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104776044 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1106;AVGPOST=0.9990;RSQ=0.9968;ERATE=0.0004;THETA=0.0005;AC=241;AN=2184 GT:DS:GL:BD 0.11034799 0 1 104776137 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8681;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104776138 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.780;LDAF=0.0076;AVGPOST=0.9968;RSQ=0.8152;ERATE=0.0004;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104776205 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3249;AVGPOST=0.9973;RSQ=0.9955;ERATE=0.0005;THETA=0.0005;AC=711;AN=2184 GT:DS:GL:BD 0.32554945 0 1 104776227 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.760;LDAF=0.0029;AVGPOST=0.9973;RSQ=0.6831;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104776252 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.6769;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104776302 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104776433 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1420;AVGPOST=0.9989;RSQ=0.9972;ERATE=0.0004;THETA=0.0005;AC=311;AN=2184 GT:DS:GL:BD 0.14239927 0 1 104776435 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0024;AVGPOST=0.9990;RSQ=0.8273;ERATE=0.0012;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104776530 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0073;AVGPOST=0.9993;RSQ=0.9672;ERATE=0.0005;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104776561 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0024;AVGPOST=0.9994;RSQ=0.8903;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104776625 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.7375;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104776729 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6388;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104776733 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.900;LDAF=0.0084;AVGPOST=0.9971;RSQ=0.8721;ERATE=0.0012;THETA=0.0010;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104776745 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1469;AVGPOST=0.9993;RSQ=0.9980;ERATE=0.0004;THETA=0.0004;AC=321;AN=2184 GT:DS:GL:BD 0.14697802 0 1 104776766 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104776832 . GCC G 2751 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0253;AVGPOST=0.9988;RSQ=0.9785;ERATE=0.0005;THETA=0.0003;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 104776839 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7141;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104776931 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4608;AVGPOST=0.9979;RSQ=0.9972;ERATE=0.0005;THETA=0.0004;AC=1008;AN=2184 GT:DS:GL:BD 0.46153846 0 1 104776932 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0795;AVGPOST=0.9989;RSQ=0.9937;ERATE=0.0004;THETA=0.0002;AC=173;AN=2184 GT:DS:GL:BD 0.07921246 0 1 104776983 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8702;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104777006 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0097;AVGPOST=0.9997;RSQ=0.9840;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104777016 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0715;AVGPOST=0.9981;RSQ=0.9893;ERATE=0.0005;THETA=0.0006;AC=156;AN=2184 GT:DS:GL:BD 0.07142857 0 1 104777064 . TTA T 78 PASS INDEL;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0031;AVGPOST=0.9965;RSQ=0.5713;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104777067 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.763;LDAF=0.0021;AVGPOST=0.9989;RSQ=0.7697;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104777095 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0027;AVGPOST=0.9996;RSQ=0.9438;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104777267 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7740;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104777283 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0074;AVGPOST=0.9997;RSQ=0.9841;ERATE=0.0004;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104777330 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0376;AVGPOST=0.9996;RSQ=0.9947;ERATE=0.0004;THETA=0.0004;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 104777331 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0040;AVGPOST=0.9991;RSQ=0.8989;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104777362 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0053;AVGPOST=0.9976;RSQ=0.8263;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104777416 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1884;AVGPOST=0.9980;RSQ=0.9950;ERATE=0.0004;THETA=0.0005;AC=411;AN=2184 GT:DS:GL:BD 0.18818681 0 1 104777509 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7637;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104777519 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0033;AVGPOST=0.9980;RSQ=0.7800;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104777547 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.1929;AVGPOST=0.9966;RSQ=0.9915;ERATE=0.0006;THETA=0.0004;AC=421;AN=2184 GT:DS:GL:BD 0.19276556 0 1 104777550 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0089;AVGPOST=0.9985;RSQ=0.9334;ERATE=0.0006;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104777591 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.5470;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104777629 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0120;AVGPOST=0.9996;RSQ=0.9835;ERATE=0.0003;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104777631 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0804;AVGPOST=0.9977;RSQ=0.9900;ERATE=0.0004;THETA=0.0003;AC=177;AN=2184 GT:DS:GL:BD 0.08104396 0 1 104777686 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0156;AVGPOST=0.9997;RSQ=0.9915;ERATE=0.0003;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 104777688 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8064;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104777711 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8599;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104777780 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0140;AVGPOST=0.9987;RSQ=0.9600;ERATE=0.0003;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104777830 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0017;AVGPOST=0.9987;RSQ=0.7230;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104777853 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1467;AVGPOST=0.9971;RSQ=0.9921;ERATE=0.0005;THETA=0.0007;AC=319;AN=2184 GT:DS:GL:BD 0.14606227 0 1 104777890 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0335;AVGPOST=0.9981;RSQ=0.9791;ERATE=0.0005;THETA=0.0007;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 104777936 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0793;AVGPOST=0.9995;RSQ=0.9973;ERATE=0.0003;THETA=0.0006;AC=173;AN=2184 GT:DS:GL:BD 0.07921246 0 1 104777980 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0139;AVGPOST=0.9993;RSQ=0.9763;ERATE=0.0004;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104778014 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.951;LDAF=0.0188;AVGPOST=0.9951;RSQ=0.8983;ERATE=0.0004;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 104778045 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0714;AVGPOST=0.9989;RSQ=0.9934;ERATE=0.0005;THETA=0.0007;AC=155;AN=2184 GT:DS:GL:BD 0.07097070 0 1 104778135 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0157;AVGPOST=0.9995;RSQ=0.9844;ERATE=0.0004;THETA=0.0007;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 104778140 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.535;LDAF=0.0040;AVGPOST=0.9976;RSQ=0.7597;ERATE=0.0004;THETA=0.0029;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104778178 . AG A 86 PASS INDEL;BAVGPOST=0.969;BRSQ=0.395;LDAF=0.0382;AVGPOST=0.9562;RSQ=0.5538;ERATE=0.0066;THETA=0.0006;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 104778251 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.693;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.5271;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104778333 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104778359 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.670;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0004;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104778376 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.719;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4530;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104778390 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.693;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4184;ERATE=0.0006;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104778535 . TGTGC T 49486 PASS INDEL;BAVGPOST=0.968;BRSQ=0.405;LDAF=0.9501;AVGPOST=0.9410;RSQ=0.5082;ERATE=0.0083;THETA=0.0005;AC=2112;AN=2184 GT:DS:GL:BD 0.96703297 1 1 104778654 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0248;AVGPOST=0.9980;RSQ=0.9669;ERATE=0.0004;THETA=0.0006;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 104778680 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.830;LDAF=0.0126;AVGPOST=0.9987;RSQ=0.9528;ERATE=0.0004;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104778681 . C CT 5747 PASS INDEL;BAVGPOST=0.996;BRSQ=0.975;LDAF=0.0709;AVGPOST=0.9974;RSQ=0.9827;ERATE=0.0006;THETA=0.0006;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 104778731 . G GA 201 PASS INDEL;BAVGPOST=0.987;BRSQ=0.519;LDAF=0.0227;AVGPOST=0.9717;RSQ=0.4845;ERATE=0.0063;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104778752 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0075;AVGPOST=0.9985;RSQ=0.9191;ERATE=0.0005;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104778873 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4518;ERATE=0.0006;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104779020 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.656;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8075;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104779032 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.906;LDAF=0.0108;AVGPOST=0.9946;RSQ=0.8464;ERATE=0.0004;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104779281 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6571;ERATE=0.0005;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104779378 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.982;LDAF=0.0585;AVGPOST=0.9972;RSQ=0.9817;ERATE=0.0007;THETA=0.0003;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 104779463 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0725;AVGPOST=0.9975;RSQ=0.9865;ERATE=0.0007;THETA=0.0007;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 104779528 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0229;AVGPOST=0.9986;RSQ=0.9745;ERATE=0.0005;THETA=0.0006;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 104779534 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7299;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104779691 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0089;AVGPOST=0.9982;RSQ=0.9092;ERATE=0.0004;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104779834 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.897;LDAF=0.0378;AVGPOST=0.9938;RSQ=0.9361;ERATE=0.0010;THETA=0.0007;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 104779853 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.641;LDAF=0.0038;AVGPOST=0.9941;RSQ=0.3510;ERATE=0.0015;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104779875 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0084;AVGPOST=0.9987;RSQ=0.9331;ERATE=0.0005;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104779893 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4492;AVGPOST=0.9926;RSQ=0.9908;ERATE=0.0008;THETA=0.0011;AC=984;AN=2184 GT:DS:GL:BD 0.45054945 0 1 104779903 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9163;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104779949 . C CT 2990 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0215;AVGPOST=0.9985;RSQ=0.9744;ERATE=0.0003;THETA=0.0015;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 104779976 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.3775;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104780187 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.767;LDAF=0.0020;AVGPOST=0.9978;RSQ=0.5516;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104780277 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0369;AVGPOST=0.9937;RSQ=0.9420;ERATE=0.0008;THETA=0.0005;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 104780290 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.979;LDAF=0.0403;AVGPOST=0.9974;RSQ=0.9747;ERATE=0.0007;THETA=0.0005;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 104780410 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.719;LDAF=0.9950;AVGPOST=0.9944;RSQ=0.5238;ERATE=0.0014;THETA=0.0029;AC=2179;AN=2184 GT:DS:GL:BD 0.99771065 1 1 104780463 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.830;LDAF=0.0081;AVGPOST=0.9966;RSQ=0.8279;ERATE=0.0004;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104780586 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.987;LDAF=0.1465;AVGPOST=0.9945;RSQ=0.9828;ERATE=0.0005;THETA=0.0028;AC=317;AN=2184 GT:DS:GL:BD 0.14514652 0 1 104780587 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.655;LDAF=0.0031;AVGPOST=0.9982;RSQ=0.7647;ERATE=0.0006;THETA=0.0032;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104780603 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.617;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.3683;ERATE=0.0007;THETA=0.0073;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104780620 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0130;AVGPOST=0.9957;RSQ=0.8711;ERATE=0.0007;THETA=0.0032;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104780878 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0086;AVGPOST=0.9979;RSQ=0.9069;ERATE=0.0004;THETA=0.0014;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104780922 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.960;LDAF=0.0342;AVGPOST=0.9970;RSQ=0.9674;ERATE=0.0003;THETA=0.0003;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 104780993 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.974;LDAF=0.1087;AVGPOST=0.9940;RSQ=0.9776;ERATE=0.0006;THETA=0.0004;AC=238;AN=2184 GT:DS:GL:BD 0.10897436 0 1 104780999 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.974;LDAF=0.0564;AVGPOST=0.9958;RSQ=0.9703;ERATE=0.0006;THETA=0.0007;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 104781002 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.6891;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104781011 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0121;AVGPOST=0.9996;RSQ=0.9856;ERATE=0.0003;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104781055 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.970;LDAF=0.0218;AVGPOST=0.9973;RSQ=0.9551;ERATE=0.0003;THETA=0.0061;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 104781056 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104781197 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8688;ERATE=0.0004;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104781198 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.641;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8330;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104781224 . AG A 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5632;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104781232 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6010;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104781259 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0742;AVGPOST=0.9979;RSQ=0.9878;ERATE=0.0003;THETA=0.0005;AC=162;AN=2184 GT:DS:GL:BD 0.07417583 0 1 104781264 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6343;ERATE=0.0003;THETA=0.0048;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104781294 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8859;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104781313 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0533;AVGPOST=0.9967;RSQ=0.9744;ERATE=0.0004;THETA=0.0047;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 104781345 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9503;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104781354 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.715;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.5936;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104781395 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5073;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104781456 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.996;LDAF=0.4268;AVGPOST=0.9979;RSQ=0.9969;ERATE=0.0005;THETA=0.0004;AC=934;AN=2184 GT:DS:GL:BD 0.42765567 0 1 104781475 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0352;AVGPOST=0.9999;RSQ=0.9988;ERATE=0.0002;THETA=0.0004;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 104781493 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7200;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104781554 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0012;AVGPOST=0.9983;RSQ=0.4714;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104781598 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.820;LDAF=0.0023;AVGPOST=0.9987;RSQ=0.8119;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104781599 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0002;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104781677 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0244;AVGPOST=0.9995;RSQ=0.9909;ERATE=0.0003;THETA=0.0003;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 104781705 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5869;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104781739 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0116;AVGPOST=0.9988;RSQ=0.9642;ERATE=0.0004;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104781781 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0024;AVGPOST=0.9969;RSQ=0.5086;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104781976 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6008;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104782054 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0081;AVGPOST=0.9994;RSQ=0.9653;ERATE=0.0004;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104782061 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6915;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104782123 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0330;AVGPOST=0.9997;RSQ=0.9961;ERATE=0.0003;THETA=0.0004;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 104782136 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0424;AVGPOST=0.9989;RSQ=0.9900;ERATE=0.0004;THETA=0.0006;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 104782178 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0353;AVGPOST=0.9998;RSQ=0.9971;ERATE=0.0002;THETA=0.0003;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 104782293 . G GT 781 PASS INDEL;BAVGPOST=0.977;BRSQ=0.875;LDAF=0.1114;AVGPOST=0.9805;RSQ=0.9246;ERATE=0.0014;THETA=0.0003;AC=249;AN=2184 GT:DS:GL:BD 0.11401099 0 1 104782451 rs59779028 T TA 10149 PASS INDEL;BAVGPOST=0.995;BRSQ=0.980;LDAF=0.1180;AVGPOST=0.9971;RSQ=0.9885;ERATE=0.0004;THETA=0.0009;AC=256;AN=2184 GT:DS:GL:BD 0.11721612 0 1 104782453 . A AC 595 PASS INDEL;BAVGPOST=0.970;BRSQ=0.837;LDAF=0.1308;AVGPOST=0.9576;RSQ=0.8502;ERATE=0.0015;THETA=0.0004;AC=272;AN=2184 GT:DS:GL:BD 0.12454212 0 1 104782456 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6307;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104782490 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104782525 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0355;AVGPOST=0.9989;RSQ=0.9855;ERATE=0.0004;THETA=0.0007;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 104782579 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6398;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104782592 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1183;AVGPOST=0.9981;RSQ=0.9923;ERATE=0.0003;THETA=0.0003;AC=257;AN=2184 GT:DS:GL:BD 0.11767399 0 1 104782607 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0359;AVGPOST=0.9984;RSQ=0.9824;ERATE=0.0003;THETA=0.0003;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 104782668 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0354;AVGPOST=0.9994;RSQ=0.9918;ERATE=0.0004;THETA=0.0003;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 104782713 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.801;LDAF=0.0021;AVGPOST=0.9974;RSQ=0.5214;ERATE=0.0007;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104782739 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0028;AVGPOST=0.9982;RSQ=0.7664;ERATE=0.0002;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104782740 . T TA 1482 PASS INDEL;BAVGPOST=0.862;BRSQ=0.494;LDAF=0.2276;AVGPOST=0.7880;RSQ=0.4941;ERATE=0.0454;THETA=0.0004;AC=359;AN=2184 GT:DS:GL:BD 0.16437729 0 1 104782781 . T TA 186 PASS INDEL;BAVGPOST=0.994;BRSQ=0.667;LDAF=0.0229;AVGPOST=0.9771;RSQ=0.6090;ERATE=0.0032;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 104782793 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.781;LDAF=0.0157;AVGPOST=0.9905;RSQ=0.7771;ERATE=0.0007;THETA=0.0002;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104782797 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0202;AVGPOST=0.9996;RSQ=0.9909;ERATE=0.0003;THETA=0.0004;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 104782803 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9157;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104782812 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0005;AVGPOST=0.9994;RSQ=0.4631;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104782816 . C CT 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8397;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104782875 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7841;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104782892 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0204;AVGPOST=0.9986;RSQ=0.9721;ERATE=0.0003;THETA=0.0004;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 104782906 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0847;AVGPOST=0.9996;RSQ=0.9977;ERATE=0.0004;THETA=0.0007;AC=185;AN=2184 GT:DS:GL:BD 0.08470696 0 1 104782921 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5857;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104782956 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6629;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104783006 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0098;AVGPOST=0.9996;RSQ=0.9822;ERATE=0.0003;THETA=0.0008;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104783029 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0362;AVGPOST=0.9984;RSQ=0.9842;ERATE=0.0004;THETA=0.0003;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 104783043 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104783124 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1316;AVGPOST=0.9999;RSQ=0.9995;ERATE=0.0002;THETA=0.0004;AC=288;AN=2184 GT:DS:GL:BD 0.13186814 0 1 104783223 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0417;AVGPOST=0.9992;RSQ=0.9929;ERATE=0.0002;THETA=0.0008;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 104783253 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2165;AVGPOST=0.9975;RSQ=0.9943;ERATE=0.0005;THETA=0.0003;AC=472;AN=2184 GT:DS:GL:BD 0.21611722 0 1 104783559 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6522;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104783566 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0023;AVGPOST=0.9988;RSQ=0.7685;ERATE=0.0006;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104783594 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0003;AVGPOST=0.9997;RSQ=0.6564;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104783674 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1893;AVGPOST=0.9983;RSQ=0.9956;ERATE=0.0004;THETA=0.0003;AC=413;AN=2184 GT:DS:GL:BD 0.18910256 0 1 104783727 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0019;AVGPOST=0.9972;RSQ=0.4112;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104783736 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.987;LDAF=0.4238;AVGPOST=0.9972;RSQ=0.9958;ERATE=0.0004;THETA=0.0003;AC=929;AN=2184 GT:DS:GL:BD 0.42536631 0 1 104783757 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.952;LDAF=0.0718;AVGPOST=0.9971;RSQ=0.9828;ERATE=0.0003;THETA=0.0003;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 104783758 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.2159;AVGPOST=0.9983;RSQ=0.9960;ERATE=0.0003;THETA=0.0007;AC=472;AN=2184 GT:DS:GL:BD 0.21611722 0 1 104783771 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0016;AVGPOST=0.9980;RSQ=0.5369;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104783795 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1261;AVGPOST=0.9997;RSQ=0.9987;ERATE=0.0002;THETA=0.0004;AC=276;AN=2184 GT:DS:GL:BD 0.12637363 0 1 104783884 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6714;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104783922 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1294;AVGPOST=0.9992;RSQ=0.9972;ERATE=0.0003;THETA=0.0006;AC=283;AN=2184 GT:DS:GL:BD 0.12957875 0 1 104784074 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4231;AVGPOST=0.9988;RSQ=0.9984;ERATE=0.0003;THETA=0.0005;AC=925;AN=2184 GT:DS:GL:BD 0.42353481 0 1 104784092 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0043;AVGPOST=0.9984;RSQ=0.8310;ERATE=0.0005;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104784111 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104784140 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.2157;AVGPOST=0.9980;RSQ=0.9958;ERATE=0.0004;THETA=0.0012;AC=471;AN=2184 GT:DS:GL:BD 0.21565934 0 1 104784190 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.0838;AVGPOST=0.9975;RSQ=0.9865;ERATE=0.0005;THETA=0.0008;AC=182;AN=2184 GT:DS:GL:BD 0.08333334 0 1 104784201 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5177;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104784328 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104784344 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6562;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104784352 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.932;LDAF=0.0181;AVGPOST=0.9977;RSQ=0.9434;ERATE=0.0003;THETA=0.0007;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 104784403 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4237;AVGPOST=0.9994;RSQ=0.9990;ERATE=0.0004;THETA=0.0007;AC=927;AN=2184 GT:DS:GL:BD 0.42445055 0 1 104784416 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104784481 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1431;AVGPOST=0.9959;RSQ=0.9886;ERATE=0.0008;THETA=0.0003;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 104784533 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0559;AVGPOST=0.9987;RSQ=0.9933;ERATE=0.0003;THETA=0.0003;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 104784537 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6738;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104784580 . A AG 649 PASS INDEL;BAVGPOST=0.990;BRSQ=0.781;LDAF=0.0245;AVGPOST=0.9980;RSQ=0.9629;ERATE=0.0004;THETA=0.0006;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 104784756 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.836;LDAF=0.0122;AVGPOST=0.9946;RSQ=0.8121;ERATE=0.0004;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104784811 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8006;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104784843 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0022;AVGPOST=0.9988;RSQ=0.7489;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104784909 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0138;AVGPOST=0.9998;RSQ=0.9921;ERATE=0.0002;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104784963 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0039;AVGPOST=0.9965;RSQ=0.6831;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104785132 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0069;AVGPOST=0.9970;RSQ=0.8363;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104785142 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0374;AVGPOST=0.9992;RSQ=0.9935;ERATE=0.0002;THETA=0.0006;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 104785189 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4212;AVGPOST=0.9985;RSQ=0.9978;ERATE=0.0004;THETA=0.0003;AC=922;AN=2184 GT:DS:GL:BD 0.42216116 0 1 104785219 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.776;LDAF=0.0048;AVGPOST=0.9959;RSQ=0.6746;ERATE=0.0008;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104785317 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0120;AVGPOST=0.9987;RSQ=0.9521;ERATE=0.0002;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104785318 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3486;AVGPOST=0.9982;RSQ=0.9975;ERATE=0.0004;THETA=0.0004;AC=762;AN=2184 GT:DS:GL:BD 0.34890109 0 1 104785386 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0220;AVGPOST=0.9998;RSQ=0.9949;ERATE=0.0003;THETA=0.0008;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 104785419 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0142;AVGPOST=0.9997;RSQ=0.9897;ERATE=0.0003;THETA=0.0008;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 104785457 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7595;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104785473 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0727;AVGPOST=0.9994;RSQ=0.9959;ERATE=0.0003;THETA=0.0004;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 104785493 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.822;LDAF=0.0068;AVGPOST=0.9974;RSQ=0.8517;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104785515 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7367;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104785580 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.939;LDAF=0.0056;AVGPOST=0.9971;RSQ=0.8231;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104785581 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9239;ERATE=0.0002;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104785614 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0702;AVGPOST=0.9994;RSQ=0.9966;ERATE=0.0003;THETA=0.0008;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 104785619 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0763;AVGPOST=0.9974;RSQ=0.9856;ERATE=0.0014;THETA=0.0005;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 104785750 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9460;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104785790 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0731;AVGPOST=0.9995;RSQ=0.9976;ERATE=0.0003;THETA=0.0004;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 104786072 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0730;AVGPOST=0.9996;RSQ=0.9978;ERATE=0.0002;THETA=0.0006;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 104786080 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0595;AVGPOST=0.9994;RSQ=0.9954;ERATE=0.0003;THETA=0.0006;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 104786163 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9641;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104786256 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5579;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104786269 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104786284 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.798;LDAF=0.0036;AVGPOST=0.9975;RSQ=0.7437;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104786355 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0112;AVGPOST=0.9983;RSQ=0.9532;ERATE=0.0003;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104786366 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0243;AVGPOST=0.9995;RSQ=0.9909;ERATE=0.0003;THETA=0.0007;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 104786420 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.714;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8361;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104786577 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104786665 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.843;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104786675 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.4204;AVGPOST=0.9958;RSQ=0.9935;ERATE=0.0008;THETA=0.0006;AC=918;AN=2184 GT:DS:GL:BD 0.42032966 0 1 104786885 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9989;RSQ=0.9506;ERATE=0.0003;THETA=0.0012;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104786949 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5829;AVGPOST=0.9960;RSQ=0.9937;ERATE=0.0007;THETA=0.0004;AC=1275;AN=2184 GT:DS:GL:BD 0.58379120 1 1 104787273 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9875;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104787483 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8580;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104787505 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0563;AVGPOST=0.9995;RSQ=0.9966;ERATE=0.0004;THETA=0.0004;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 104787508 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0540;AVGPOST=0.9995;RSQ=0.9961;ERATE=0.0003;THETA=0.0011;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 104787629 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0025;AVGPOST=0.9992;RSQ=0.8474;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104787654 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.5848;AVGPOST=0.9985;RSQ=0.9974;ERATE=0.0004;THETA=0.0005;AC=1280;AN=2184 GT:DS:GL:BD 0.58608061 1 1 104787704 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5882;AVGPOST=0.9977;RSQ=0.9966;ERATE=0.0006;THETA=0.0008;AC=1288;AN=2184 GT:DS:GL:BD 0.58974361 1 1 104787720 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7300;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104787797 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0052;AVGPOST=0.9989;RSQ=0.9262;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104787965 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6199;ERATE=0.0005;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104788063 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0034;AVGPOST=0.9985;RSQ=0.8188;ERATE=0.0004;THETA=0.0012;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104788067 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.9068;ERATE=0.0005;THETA=0.0011;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104788151 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5319;AVGPOST=0.9979;RSQ=0.9967;ERATE=0.0006;THETA=0.0004;AC=1164;AN=2184 GT:DS:GL:BD 0.53296703 1 1 104788254 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6374;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104788288 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.0987;AVGPOST=0.9989;RSQ=0.9955;ERATE=0.0004;THETA=0.0004;AC=216;AN=2184 GT:DS:GL:BD 0.09890110 0 1 104788327 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6195;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104788334 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5311;AVGPOST=0.9980;RSQ=0.9968;ERATE=0.0005;THETA=0.0005;AC=1163;AN=2184 GT:DS:GL:BD 0.53250915 1 1 104788512 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0067;AVGPOST=0.9994;RSQ=0.9545;ERATE=0.0004;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104788584 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0023;AVGPOST=0.9992;RSQ=0.8855;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104788616 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9799;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104788660 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6808;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104788689 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.675;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7682;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104788693 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5309;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0003;THETA=0.0051;AC=1161;AN=2184 GT:DS:GL:BD 0.53159338 1 1 104788744 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.917;LDAF=0.0048;AVGPOST=0.9984;RSQ=0.8490;ERATE=0.0010;THETA=0.0001;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104788765 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9490;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104788774 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0101;AVGPOST=0.9995;RSQ=0.9785;ERATE=0.0003;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 104788830 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0141;AVGPOST=0.9984;RSQ=0.9571;ERATE=0.0005;THETA=0.0032;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104789142 . T TC 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.7822;ERATE=0.0003;THETA=0.0054;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104789167 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.994;LDAF=0.5306;AVGPOST=0.9923;RSQ=0.9883;ERATE=0.0008;THETA=0.0015;AC=1163;AN=2184 GT:DS:GL:BD 0.53250915 1 1 104789210 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0021;AVGPOST=0.9987;RSQ=0.7842;ERATE=0.0004;THETA=0.0021;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104789286 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5709;ERATE=0.0005;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104789365 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.995;LDAF=0.4026;AVGPOST=0.9898;RSQ=0.9852;ERATE=0.0008;THETA=0.0018;AC=882;AN=2184 GT:DS:GL:BD 0.40384614 0 1 104789371 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6244;ERATE=0.0003;THETA=0.0112;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104789393 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.811;LDAF=0.0076;AVGPOST=0.9966;RSQ=0.8283;ERATE=0.0004;THETA=0.0040;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104789442 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0040;AVGPOST=0.9990;RSQ=0.8989;ERATE=0.0003;THETA=0.0059;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104789543 . C CG 1473 PASS INDEL;BAVGPOST=0.996;BRSQ=0.928;LDAF=0.0218;AVGPOST=0.9950;RSQ=0.9092;ERATE=0.0008;THETA=0.0023;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 104789575 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104789626 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0028;AVGPOST=0.9996;RSQ=0.9339;ERATE=0.0007;THETA=0.0072;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104789704 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0438;AVGPOST=0.9971;RSQ=0.9768;ERATE=0.0004;THETA=0.0047;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 104789723 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9196;ERATE=0.0004;THETA=0.0079;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104789761 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0165;AVGPOST=0.9978;RSQ=0.9466;ERATE=0.0004;THETA=0.0008;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 104789763 MERGED_DEL_2_1149 A ADELA . . SV;BAVGPOST=0.999;BRSQ=0.589;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5270;ERATE=0.0005;THETA=0.0065;CIEND=-17;33;CIPOS=-18;19;END=5404651;SOURCE=GenomeStrip_5403433_5404651;SVTYPE=DEL;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104789773 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.787;LDAF=0.0083;AVGPOST=0.9930;RSQ=0.6614;ERATE=0.0027;THETA=0.0040;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104789792 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9244;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104789881 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.967;LDAF=0.7722;AVGPOST=0.9813;RSQ=0.9647;ERATE=0.0006;THETA=0.0210;AC=1689;AN=2184 GT:DS:GL:BD 0.77335167 1 1 104789925 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7995;ERATE=0.0003;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104789968 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6349;ERATE=0.0003;THETA=0.0032;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104790068 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7891;ERATE=0.0003;THETA=0.0138;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104790069 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9985;RSQ=0.8669;ERATE=0.0003;THETA=0.0079;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104790076 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0030;AVGPOST=0.9974;RSQ=0.6866;ERATE=0.0006;THETA=0.0064;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104790079 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.810;LDAF=0.0114;AVGPOST=0.9903;RSQ=0.6947;ERATE=0.0029;THETA=0.0014;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104790096 . A AG 1063 PASS INDEL;BAVGPOST=0.997;BRSQ=0.914;LDAF=0.0144;AVGPOST=0.9947;RSQ=0.8609;ERATE=0.0005;THETA=0.0010;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104790100 . AG A 129 PASS INDEL;BAVGPOST=0.998;BRSQ=0.837;LDAF=0.0053;AVGPOST=0.9976;RSQ=0.8075;ERATE=0.0009;THETA=0.0121;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104790117 . A AG 1651 PASS INDEL;BAVGPOST=0.994;BRSQ=0.904;LDAF=0.0252;AVGPOST=0.9914;RSQ=0.8557;ERATE=0.0043;THETA=0.0122;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 104790135 . TGG T 9590 PASS INDEL;BAVGPOST=0.978;BRSQ=0.895;LDAF=0.1033;AVGPOST=0.9766;RSQ=0.9141;ERATE=0.0005;THETA=0.0036;AC=211;AN=2184 GT:DS:GL:BD 0.09661172 0 1 104790166 rs71564536 T TC 7137 PASS INDEL;BAVGPOST=0.978;BRSQ=0.895;LDAF=0.1030;AVGPOST=0.9763;RSQ=0.9129;ERATE=0.0005;THETA=0.0216;AC=210;AN=2184 GT:DS:GL:BD 0.09615385 0 1 104790169 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0003;THETA=0.0108;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104790444 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9775;ERATE=0.0003;THETA=0.0055;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104790466 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.679;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0003;THETA=0.0096;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104790623 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.928;LDAF=0.0123;AVGPOST=0.9969;RSQ=0.9079;ERATE=0.0003;THETA=0.0104;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104790680 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5650;ERATE=0.0004;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104790712 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0060;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104790713 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7113;ERATE=0.0006;THETA=0.0035;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104790845 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104791040 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0004;THETA=0.0086;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104791072 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.0623;AVGPOST=0.9981;RSQ=0.9868;ERATE=0.0004;THETA=0.0039;AC=135;AN=2184 GT:DS:GL:BD 0.06181319 0 1 104791193 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6229;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104791225 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.860;LDAF=0.0095;AVGPOST=0.9981;RSQ=0.9100;ERATE=0.0003;THETA=0.0050;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104791237 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0167;AVGPOST=0.9983;RSQ=0.9654;ERATE=0.0003;THETA=0.0009;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 104791318 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9993;RSQ=0.8832;ERATE=0.0009;THETA=0.0093;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104791407 . T TC 18802 PASS INDEL;BAVGPOST=0.939;BRSQ=0.874;LDAF=0.7170;AVGPOST=0.8787;RSQ=0.7852;ERATE=0.0252;THETA=0.0004;AC=1604;AN=2184 GT:DS:GL:BD 0.73443222 1 1 104791450 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0157;AVGPOST=0.9968;RSQ=0.9143;ERATE=0.0005;THETA=0.0012;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104791518 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.594;LDAF=0.0026;AVGPOST=0.9957;RSQ=0.3792;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104791535 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1010;AVGPOST=0.9988;RSQ=0.9945;ERATE=0.0004;THETA=0.0009;AC=220;AN=2184 GT:DS:GL:BD 0.10073260 0 1 104791654 MERGED_DEL_2_1252 TGTCGTGCTCCAGCCTCCAGAGTAGCTGGAATTACAGGCCCCCACCACCACACTCAGCTAATTTTTTTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCGCGATCTCAGGTGATCTGTCCGCCTTGGCCTCCCAAAGTCCTGGGATTACAGGCATGAGCCACTGCACCC TAT . . SV;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0155;AVGPOST=0.9964;RSQ=0.8951;ERATE=0.0008;THETA=0.0012;CIEND=-106;47;CIPOS=-90;67;END=6459610;HOMLEN=0;HOMSEQ;SOURCE=BreakDancer_6458634_6459571;EMBLdel GT:DS:GL:BD 0.01419414 0 1 104791792 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0014;AVGPOST=0.9986;RSQ=0.6005;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104791837 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4001;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104791917 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6714;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104791965 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3437;AVGPOST=0.9970;RSQ=0.9959;ERATE=0.0006;THETA=0.0005;AC=751;AN=2184 GT:DS:GL:BD 0.34386447 0 1 104791975 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0031;AVGPOST=0.9995;RSQ=0.9378;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104792046 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6547;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104792113 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9708;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104792158 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0039;AVGPOST=0.9994;RSQ=0.9468;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104792164 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0031;AVGPOST=0.9994;RSQ=0.9339;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104792174 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3444;AVGPOST=0.9987;RSQ=0.9982;ERATE=0.0004;THETA=0.0014;AC=753;AN=2184 GT:DS:GL:BD 0.34478021 0 1 104792297 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104792308 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.981;LDAF=0.1822;AVGPOST=0.9970;RSQ=0.9928;ERATE=0.0003;THETA=0.0021;AC=397;AN=2184 GT:DS:GL:BD 0.18177655 0 1 104792318 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6873;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104792403 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104792596 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9543;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104792609 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9895;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104792659 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.941;LDAF=0.3323;AVGPOST=0.9820;RSQ=0.9759;ERATE=0.0027;THETA=0.0011;AC=730;AN=2184 GT:DS:GL:BD 0.33424908 0 1 104792966 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.731;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5320;ERATE=0.0005;THETA=0.0049;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104793011 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.968;LDAF=0.1478;AVGPOST=0.9960;RSQ=0.9893;ERATE=0.0006;THETA=0.0005;AC=321;AN=2184 GT:DS:GL:BD 0.14697802 0 1 104793155 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0511;AVGPOST=0.9971;RSQ=0.9805;ERATE=0.0004;THETA=0.0028;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 104793220 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.665;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4082;ERATE=0.0005;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104793247 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.699;LDAF=0.0029;AVGPOST=0.9973;RSQ=0.6055;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104793266 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.654;LDAF=0.0068;AVGPOST=0.9967;RSQ=0.8122;ERATE=0.0004;THETA=0.0009;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104793325 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0043;AVGPOST=0.9987;RSQ=0.8665;ERATE=0.0004;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104793329 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.648;LDAF=0.0021;AVGPOST=0.9974;RSQ=0.4424;ERATE=0.0007;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104793402 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.467;LDAF=0.0026;AVGPOST=0.9968;RSQ=0.4777;ERATE=0.0007;THETA=0.0032;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104793445 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0117;AVGPOST=0.9991;RSQ=0.9670;ERATE=0.0003;THETA=0.0013;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104793495 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0041;AVGPOST=0.9982;RSQ=0.8179;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104793568 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0125;AVGPOST=0.9977;RSQ=0.9286;ERATE=0.0004;THETA=0.0009;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104793603 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.1327;AVGPOST=0.9967;RSQ=0.9883;ERATE=0.0006;THETA=0.0018;AC=289;AN=2184 GT:DS:GL:BD 0.13232601 0 1 104793711 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0045;AVGPOST=0.9991;RSQ=0.9120;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104793787 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.966;LDAF=0.3227;AVGPOST=0.9888;RSQ=0.9838;ERATE=0.0016;THETA=0.0008;AC=705;AN=2184 GT:DS:GL:BD 0.32280219 0 1 104793889 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0043;AVGPOST=0.9990;RSQ=0.9053;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104794136 . C CA 2296 PASS INDEL;BAVGPOST=0.789;BRSQ=0.479;LDAF=0.2968;AVGPOST=0.7384;RSQ=0.4675;ERATE=0.0604;THETA=0.0011;AC=482;AN=2184 GT:DS:GL:BD 0.22069597 0 1 104794220 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0390;AVGPOST=0.9980;RSQ=0.9797;ERATE=0.0004;THETA=0.0007;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 104794245 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.682;LDAF=0.0028;AVGPOST=0.9983;RSQ=0.7220;ERATE=0.0005;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104794291 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1983;AVGPOST=0.9987;RSQ=0.9970;ERATE=0.0004;THETA=0.0005;AC=433;AN=2184 GT:DS:GL:BD 0.19826007 0 1 104794312 . AAAC A 484 PASS INDEL;BAVGPOST=0.976;BRSQ=0.474;LDAF=0.0354;AVGPOST=0.9670;RSQ=0.6357;ERATE=0.0038;THETA=0.0010;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 104794358 rs111305102 A AAC 1607 PASS INDEL;BAVGPOST=0.902;BRSQ=0.603;LDAF=0.1681;AVGPOST=0.8662;RSQ=0.6287;ERATE=0.0239;THETA=0.0019;AC=280;AN=2184 GT:DS:GL:BD 0.12820514 0 1 104794371 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7800;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104794526 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0023;AVGPOST=0.9987;RSQ=0.7597;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104794550 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0039;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104794568 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7164;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104794674 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1969;AVGPOST=0.9986;RSQ=0.9969;ERATE=0.0005;THETA=0.0007;AC=431;AN=2184 GT:DS:GL:BD 0.19734432 0 1 104794686 . TTC T 18 PASS INDEL;BAVGPOST=1.000;BRSQ=0.724;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7349;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104794723 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0985;AVGPOST=0.9954;RSQ=0.9800;ERATE=0.0004;THETA=0.0008;AC=212;AN=2184 GT:DS:GL:BD 0.09706960 0 1 104794851 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2171;AVGPOST=0.9984;RSQ=0.9963;ERATE=0.0005;THETA=0.0010;AC=475;AN=2184 GT:DS:GL:BD 0.21749084 0 1 104794877 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.596;LDAF=0.0052;AVGPOST=0.9950;RSQ=0.6032;ERATE=0.0008;THETA=0.0014;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104794891 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0961;AVGPOST=0.9990;RSQ=0.9949;ERATE=0.0005;THETA=0.0010;AC=210;AN=2184 GT:DS:GL:BD 0.09615385 0 1 104794892 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.1010;AVGPOST=0.9979;RSQ=0.9906;ERATE=0.0005;THETA=0.0005;AC=220;AN=2184 GT:DS:GL:BD 0.10073260 0 1 104794896 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.987;LDAF=0.2170;AVGPOST=0.9963;RSQ=0.9933;ERATE=0.0004;THETA=0.0010;AC=475;AN=2184 GT:DS:GL:BD 0.21749084 0 1 104794965 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.786;LDAF=0.0038;AVGPOST=0.9995;RSQ=0.9314;ERATE=0.0004;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104794982 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.692;LDAF=0.0025;AVGPOST=0.9985;RSQ=0.7487;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104795012 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0042;AVGPOST=0.9992;RSQ=0.9213;ERATE=0.0004;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104795086 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.6356;ERATE=0.0005;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104795106 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7472;ERATE=0.0004;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104795146 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0206;AVGPOST=0.9999;RSQ=0.9968;ERATE=0.0003;THETA=0.0006;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 104795180 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5251;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104795268 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2169;AVGPOST=0.9979;RSQ=0.9954;ERATE=0.0005;THETA=0.0006;AC=475;AN=2184 GT:DS:GL:BD 0.21749084 0 1 104795381 . CGA C 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0025;AVGPOST=0.9963;RSQ=0.4591;ERATE=0.0004;THETA=0.0028;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104795469 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1212;AVGPOST=0.9990;RSQ=0.9963;ERATE=0.0004;THETA=0.0008;AC=265;AN=2184 GT:DS:GL:BD 0.12133700 0 1 104795473 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.983;LDAF=0.3246;AVGPOST=0.9903;RSQ=0.9863;ERATE=0.0010;THETA=0.0006;AC=712;AN=2184 GT:DS:GL:BD 0.32600734 0 1 104795524 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0145;AVGPOST=0.9977;RSQ=0.9292;ERATE=0.0006;THETA=0.0016;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 104795525 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.881;BRSQ=0.623;LDAF=0.1441;AVGPOST=0.9100;RSQ=0.7486;ERATE=0.0069;THETA=0.0007;AC=296;AN=2184 GT:DS:GL:BD 0.13553114 0 1 104795578 rs75611267 CAAA C 340 PASS INDEL;BAVGPOST=0.869;BRSQ=0.429;LDAF=0.1271;AVGPOST=0.8906;RSQ=0.6452;ERATE=0.0061;THETA=0.0004;AC=241;AN=2184 GT:DS:GL:BD 0.11034799 0 1 104795593 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.466;LDAF=0.0093;AVGPOST=0.9927;RSQ=0.6838;ERATE=0.0009;THETA=0.0011;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104795643 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.658;LDAF=0.0110;AVGPOST=0.9920;RSQ=0.6812;ERATE=0.0010;THETA=0.0009;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104795703 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.447;LDAF=0.0027;AVGPOST=0.9970;RSQ=0.5172;ERATE=0.0006;THETA=0.0030;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104795745 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.538;LDAF=0.0170;AVGPOST=0.9803;RSQ=0.5623;ERATE=0.0033;THETA=0.0009;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104795746 . G GA 73 PASS INDEL;BAVGPOST=0.978;BRSQ=0.332;LDAF=0.0200;AVGPOST=0.9767;RSQ=0.5677;ERATE=0.0017;THETA=0.0006;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104795758 . AAAG A 3128 PASS INDEL;BAVGPOST=0.947;BRSQ=0.852;LDAF=0.1679;AVGPOST=0.9568;RSQ=0.9108;ERATE=0.0014;THETA=0.0006;AC=366;AN=2184 GT:DS:GL:BD 0.16758242 0 1 104795764 . AAG A 7598 PASS INDEL;BAVGPOST=0.966;BRSQ=0.911;LDAF=0.1980;AVGPOST=0.9758;RSQ=0.9558;ERATE=0.0007;THETA=0.0016;AC=441;AN=2184 GT:DS:GL:BD 0.20192307 0 1 104795765 . AG A 7607 PASS INDEL;BAVGPOST=0.968;BRSQ=0.917;LDAF=0.1983;AVGPOST=0.9754;RSQ=0.9540;ERATE=0.0008;THETA=0.0009;AC=445;AN=2184 GT:DS:GL:BD 0.20375457 0 1 104795766 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2173;AVGPOST=0.9963;RSQ=0.9931;ERATE=0.0006;THETA=0.0041;AC=477;AN=2184 GT:DS:GL:BD 0.21840659 0 1 104795819 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5242;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104795889 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.732;LDAF=0.0093;AVGPOST=0.9941;RSQ=0.7246;ERATE=0.0007;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104795902 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4920;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104796024 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104796114 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2168;AVGPOST=0.9994;RSQ=0.9988;ERATE=0.0003;THETA=0.0007;AC=475;AN=2184 GT:DS:GL:BD 0.21749084 0 1 104796256 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6652;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104796313 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0961;AVGPOST=0.9998;RSQ=0.9988;ERATE=0.0003;THETA=0.0009;AC=210;AN=2184 GT:DS:GL:BD 0.09615385 0 1 104796342 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.686;LDAF=0.0042;AVGPOST=0.9983;RSQ=0.8454;ERATE=0.0004;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104796591 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1164;AVGPOST=0.9989;RSQ=0.9958;ERATE=0.0004;THETA=0.0004;AC=255;AN=2184 GT:DS:GL:BD 0.11675824 0 1 104796633 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0617;AVGPOST=0.9946;RSQ=0.9614;ERATE=0.0005;THETA=0.0012;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 104796695 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.964;LDAF=0.0824;AVGPOST=0.9906;RSQ=0.9528;ERATE=0.0005;THETA=0.0033;AC=176;AN=2184 GT:DS:GL:BD 0.08058608 0 1 104796792 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.966;LDAF=0.2255;AVGPOST=0.9814;RSQ=0.9590;ERATE=0.0025;THETA=0.0003;AC=484;AN=2184 GT:DS:GL:BD 0.22161172 0 1 104796810 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4430;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104796944 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0046;AVGPOST=0.9977;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104797004 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0621;AVGPOST=0.9986;RSQ=0.9897;ERATE=0.0003;THETA=0.0006;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 104797014 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.889;LDAF=0.0216;AVGPOST=0.9924;RSQ=0.8525;ERATE=0.0003;THETA=0.0002;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 104797101 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=0.9996;RSQ=0.9705;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104797113 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0428;AVGPOST=0.9993;RSQ=0.9918;ERATE=0.0003;THETA=0.0003;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 104797199 . CCAAGCCA C 1184 PASS INDEL;BAVGPOST=0.996;BRSQ=0.886;LDAF=0.0110;AVGPOST=0.9941;RSQ=0.8003;ERATE=0.0005;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104797248 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.935;LDAF=0.0195;AVGPOST=0.9930;RSQ=0.8473;ERATE=0.0004;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 104797262 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.1072;AVGPOST=0.9956;RSQ=0.9824;ERATE=0.0005;THETA=0.0007;AC=233;AN=2184 GT:DS:GL:BD 0.10668498 0 1 104797311 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.2131;AVGPOST=0.9912;RSQ=0.9801;ERATE=0.0005;THETA=0.0004;AC=460;AN=2184 GT:DS:GL:BD 0.21062271 0 1 104797327 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0053;AVGPOST=0.9993;RSQ=0.9421;ERATE=0.0003;THETA=0.0012;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104797344 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7576;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104797358 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.979;LDAF=0.0440;AVGPOST=0.9983;RSQ=0.9850;ERATE=0.0004;THETA=0.0074;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 104797384 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0644;AVGPOST=0.9961;RSQ=0.9740;ERATE=0.0005;THETA=0.0074;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 104797412 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0043;AVGPOST=0.9987;RSQ=0.8735;ERATE=0.0004;THETA=0.0034;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104797616 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9696;ERATE=0.0003;THETA=0.0029;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104797690 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.981;LDAF=0.7473;AVGPOST=0.9805;RSQ=0.9627;ERATE=0.0077;THETA=0.0047;AC=1643;AN=2184 GT:DS:GL:BD 0.75228935 1 1 104797950 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104798061 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0071;AVGPOST=0.9984;RSQ=0.9254;ERATE=0.0003;THETA=0.0047;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104798065 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104798195 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0703;AVGPOST=0.9984;RSQ=0.9900;ERATE=0.0003;THETA=0.0069;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 104798264 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0039;AVGPOST=0.9987;RSQ=0.8779;ERATE=0.0004;THETA=0.0074;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104798339 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.856;LDAF=0.0072;AVGPOST=0.9973;RSQ=0.8619;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104798393 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.879;LDAF=0.0105;AVGPOST=0.9961;RSQ=0.8426;ERATE=0.0004;THETA=0.0090;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104798446 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8537;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104798662 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.4465;AVGPOST=0.9934;RSQ=0.9897;ERATE=0.0005;THETA=0.0016;AC=970;AN=2184 GT:DS:GL:BD 0.44413918 0 1 104798815 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.695;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6072;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104798821 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5242;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104798907 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.3053;AVGPOST=0.9922;RSQ=0.9850;ERATE=0.0010;THETA=0.0015;AC=666;AN=2184 GT:DS:GL:BD 0.30494505 0 1 104798933 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.6188;AVGPOST=0.9928;RSQ=0.9876;ERATE=0.0011;THETA=0.0004;AC=1354;AN=2184 GT:DS:GL:BD 0.61996335 1 1 104798944 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3023;AVGPOST=0.9957;RSQ=0.9923;ERATE=0.0006;THETA=0.0029;AC=659;AN=2184 GT:DS:GL:BD 0.30173993 0 1 104798969 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0030;AVGPOST=0.9985;RSQ=0.8166;ERATE=0.0003;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104799103 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5874;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104799191 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.5071;AVGPOST=0.9951;RSQ=0.9914;ERATE=0.0010;THETA=0.0002;AC=1110;AN=2184 GT:DS:GL:BD 0.50824177 1 1 104799287 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.7481;AVGPOST=0.9950;RSQ=0.9897;ERATE=0.0008;THETA=0.0002;AC=1637;AN=2184 GT:DS:GL:BD 0.74954212 1 1 104799315 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.660;LDAF=0.0062;AVGPOST=0.9982;RSQ=0.8628;ERATE=0.0004;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104799321 rs79831740 GC G 16879 PASS INDEL;BAVGPOST=0.982;BRSQ=0.973;LDAF=0.5137;AVGPOST=0.9255;RSQ=0.8802;ERATE=0.0135;THETA=0.0009;AC=1123;AN=2184 GT:DS:GL:BD 0.51419413 1 1 104799339 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.1077;AVGPOST=0.9982;RSQ=0.9926;ERATE=0.0004;THETA=0.0003;AC=235;AN=2184 GT:DS:GL:BD 0.10760073 0 1 104799369 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.621;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6069;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104799375 . A AT 51 PASS INDEL;BAVGPOST=0.999;BRSQ=0.773;LDAF=0.0031;AVGPOST=0.9964;RSQ=0.5390;ERATE=0.0007;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104799436 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9804;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104799569 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.4919;AVGPOST=0.9955;RSQ=0.9926;ERATE=0.0008;THETA=0.0003;AC=1074;AN=2184 GT:DS:GL:BD 0.49175823 0 1 104799613 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.984;LDAF=0.1792;AVGPOST=0.9831;RSQ=0.9561;ERATE=0.0021;THETA=0.0002;AC=380;AN=2184 GT:DS:GL:BD 0.17399268 0 1 104799666 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.1972;AVGPOST=0.9971;RSQ=0.9929;ERATE=0.0004;THETA=0.0002;AC=431;AN=2184 GT:DS:GL:BD 0.19734432 0 1 104799820 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.1968;AVGPOST=0.9960;RSQ=0.9903;ERATE=0.0008;THETA=0.0005;AC=429;AN=2184 GT:DS:GL:BD 0.19642857 0 1 104799829 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.741;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5748;ERATE=0.0003;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104799902 . CCAT C 104 PASS INDEL;BAVGPOST=0.999;BRSQ=0.739;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.7195;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104799905 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5107;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104799929 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9996;RSQ=0.9571;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104799955 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.6087;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104800115 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6839;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104800128 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104800160 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1882;AVGPOST=0.9985;RSQ=0.9961;ERATE=0.0004;THETA=0.0003;AC=411;AN=2184 GT:DS:GL:BD 0.18818681 0 1 104800165 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4176;AVGPOST=0.9976;RSQ=0.9963;ERATE=0.0004;THETA=0.0006;AC=912;AN=2184 GT:DS:GL:BD 0.41758242 0 1 104800271 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6372;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104800279 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.811;LDAF=0.0046;AVGPOST=0.9978;RSQ=0.7994;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104800361 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5229;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104800387 . G GT 71 PASS INDEL;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4203;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104800448 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1234;AVGPOST=0.9985;RSQ=0.9946;ERATE=0.0003;THETA=0.0003;AC=270;AN=2184 GT:DS:GL:BD 0.12362637 0 1 104800451 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.7966;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104800497 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0050;AVGPOST=0.9987;RSQ=0.8978;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104800550 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104800666 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0043;AVGPOST=0.9990;RSQ=0.9066;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104800669 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.4214;AVGPOST=0.9984;RSQ=0.9977;ERATE=0.0003;THETA=0.0026;AC=920;AN=2184 GT:DS:GL:BD 0.42124543 0 1 104800828 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.783;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5371;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104800878 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4427;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104800972 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.4236;AVGPOST=0.9953;RSQ=0.9930;ERATE=0.0008;THETA=0.0009;AC=925;AN=2184 GT:DS:GL:BD 0.42353481 0 1 104801022 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104801386 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0040;AVGPOST=0.9952;RSQ=0.5567;ERATE=0.0012;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104801504 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.820;LDAF=0.0046;AVGPOST=0.9990;RSQ=0.9082;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104801506 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5025;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104801548 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0117;AVGPOST=0.9995;RSQ=0.9793;ERATE=0.0003;THETA=0.0013;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104801559 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.981;LDAF=0.8226;AVGPOST=0.9893;RSQ=0.9731;ERATE=0.0007;THETA=0.0014;AC=1802;AN=2184 GT:DS:GL:BD 0.82509160 1 1 104801600 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5655;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104801639 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.986;LDAF=0.0703;AVGPOST=0.9978;RSQ=0.9863;ERATE=0.0003;THETA=0.0004;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 104801681 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4839;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104801689 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0055;AVGPOST=0.9984;RSQ=0.8833;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104801969 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0023;AVGPOST=0.9976;RSQ=0.5987;ERATE=0.0005;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104802067 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8510;ERATE=0.0004;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104802088 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8044;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104802114 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8313;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104802264 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6714;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104802303 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0126;AVGPOST=0.9993;RSQ=0.9766;ERATE=0.0004;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104802350 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6418;AVGPOST=0.9989;RSQ=0.9982;ERATE=0.0003;THETA=0.0007;AC=1400;AN=2184 GT:DS:GL:BD 0.64102566 1 1 104802423 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9179;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104802519 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8526;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104802619 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1623;AVGPOST=0.9984;RSQ=0.9956;ERATE=0.0004;THETA=0.0003;AC=354;AN=2184 GT:DS:GL:BD 0.16208792 0 1 104802683 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104802986 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104803198 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5929;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104803202 . G GT 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7195;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104803202 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104803258 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9236;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104803440 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104803442 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.8270;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104803450 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0117;AVGPOST=0.9993;RSQ=0.9759;ERATE=0.0003;THETA=0.0002;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104803594 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0023;AVGPOST=0.9997;RSQ=0.9378;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104803673 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104803778 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104803876 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7530;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104803965 . G GA 1506 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0094;AVGPOST=0.9994;RSQ=0.9727;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104804170 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7682;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104804186 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5407;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104804755 . C CCCAA 1273 PASS INDEL;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0057;AVGPOST=0.9984;RSQ=0.8904;ERATE=0.0006;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104804797 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1530;AVGPOST=0.9992;RSQ=0.9975;ERATE=0.0004;THETA=0.0014;AC=335;AN=2184 GT:DS:GL:BD 0.15338828 0 1 104804799 . G GC 633 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=0.9973;RSQ=0.8660;ERATE=0.0004;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104804910 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.967;LDAF=0.8922;AVGPOST=0.9951;RSQ=0.9789;ERATE=0.0008;THETA=0.0004;AC=1952;AN=2184 GT:DS:GL:BD 0.89377290 1 1 104804947 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0062;AVGPOST=0.9978;RSQ=0.8533;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104804978 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0190;AVGPOST=0.9989;RSQ=0.9775;ERATE=0.0003;THETA=0.0005;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 104805042 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0059;AVGPOST=0.9998;RSQ=0.9852;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104805043 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9313;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104805478 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0057;AVGPOST=0.9977;RSQ=0.8502;ERATE=0.0005;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104805639 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6545;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104805647 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.812;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9213;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104805681 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0029;AVGPOST=0.9994;RSQ=0.9092;ERATE=0.0004;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104805728 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0021;AVGPOST=0.9983;RSQ=0.7118;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104805757 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104805836 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8619;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104805859 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104805952 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0210;AVGPOST=0.9975;RSQ=0.9569;ERATE=0.0005;THETA=0.0005;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 104806115 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0049;AVGPOST=0.9994;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104806124 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7877;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104806236 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5597;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104806437 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.990;LDAF=0.3431;AVGPOST=0.9921;RSQ=0.9892;ERATE=0.0005;THETA=0.0005;AC=750;AN=2184 GT:DS:GL:BD 0.34340659 0 1 104806458 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1644;AVGPOST=0.9989;RSQ=0.9967;ERATE=0.0003;THETA=0.0005;AC=359;AN=2184 GT:DS:GL:BD 0.16437729 0 1 104806513 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104806595 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7255;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104806662 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.950;LDAF=0.6251;AVGPOST=0.9589;RSQ=0.9380;ERATE=0.0064;THETA=0.0007;AC=1382;AN=2184 GT:DS:GL:BD 0.63278389 1 1 104806725 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.699;LDAF=0.0040;AVGPOST=0.9965;RSQ=0.6345;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104806915 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5471;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104806946 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0198;AVGPOST=0.9963;RSQ=0.9277;ERATE=0.0005;THETA=0.0009;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 104807088 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.624;LDAF=0.0092;AVGPOST=0.9962;RSQ=0.8444;ERATE=0.0006;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104807134 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0065;AVGPOST=0.9941;RSQ=0.6998;ERATE=0.0005;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104807479 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0106;AVGPOST=0.9983;RSQ=0.9335;ERATE=0.0003;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104807480 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0259;AVGPOST=0.9969;RSQ=0.9576;ERATE=0.0006;THETA=0.0007;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 104807544 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0023;AVGPOST=0.9973;RSQ=0.5693;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104807567 . G GA 137 PASS INDEL;BAVGPOST=0.984;BRSQ=0.538;LDAF=0.0431;AVGPOST=0.9441;RSQ=0.4685;ERATE=0.0141;THETA=0.0008;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 104807619 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.697;LDAF=0.0035;AVGPOST=0.9978;RSQ=0.7263;ERATE=0.0005;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104807620 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0167;AVGPOST=0.9995;RSQ=0.9882;ERATE=0.0003;THETA=0.0007;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 104807641 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7330;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104807776 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.715;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6226;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104807785 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6889;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104807795 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6495;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104807845 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104807871 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8047;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104808026 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7021;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104808192 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0138;AVGPOST=0.9999;RSQ=0.9968;ERATE=0.0003;THETA=0.0007;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104808224 . CAGATA C 507 PASS INDEL;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104808253 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0234;AVGPOST=0.9998;RSQ=0.9964;ERATE=0.0003;THETA=0.0006;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104808300 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0018;AVGPOST=0.9994;RSQ=0.8711;ERATE=0.0011;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104808415 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104808529 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.9391;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104808594 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.7285;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104808600 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104808643 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8689;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104808644 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0211;AVGPOST=0.9999;RSQ=0.9981;ERATE=0.0003;THETA=0.0010;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 104808675 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104808679 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3500;AVGPOST=0.9975;RSQ=0.9960;ERATE=0.0004;THETA=0.0042;AC=766;AN=2184 GT:DS:GL:BD 0.35073259 0 1 104809173 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0123;AVGPOST=0.9995;RSQ=0.9853;ERATE=0.0003;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104809181 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0030;AVGPOST=0.9993;RSQ=0.9128;ERATE=0.0003;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104809252 . CAGG C 237 PASS INDEL;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9035;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104809389 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0021;AVGPOST=0.9991;RSQ=0.8057;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104809437 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104809488 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0251;AVGPOST=0.9977;RSQ=0.9601;ERATE=0.0005;THETA=0.0008;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 104809499 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.974;LDAF=0.0867;AVGPOST=0.9951;RSQ=0.9784;ERATE=0.0005;THETA=0.0006;AC=188;AN=2184 GT:DS:GL:BD 0.08608059 0 1 104809537 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104809569 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0078;AVGPOST=1.0000;RSQ=0.9975;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104809603 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6696;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104809670 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6923;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104809772 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6207;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104809824 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7965;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104809842 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.951;LDAF=0.0088;AVGPOST=0.9986;RSQ=0.9544;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104809888 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3026;AVGPOST=0.9978;RSQ=0.9957;ERATE=0.0005;THETA=0.0007;AC=662;AN=2184 GT:DS:GL:BD 0.30311355 0 1 104809907 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.636;LDAF=0.0018;AVGPOST=0.9975;RSQ=0.4492;ERATE=0.0007;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104810052 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5431;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104810281 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4688;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104810285 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.810;LDAF=0.0039;AVGPOST=0.9959;RSQ=0.6235;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104810307 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9582;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104810931 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0206;AVGPOST=0.9977;RSQ=0.9609;ERATE=0.0003;THETA=0.0007;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 104811053 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104811094 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6737;ERATE=0.0004;THETA=0.0045;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104811107 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6357;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104811155 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0019;AVGPOST=0.9983;RSQ=0.6593;ERATE=0.0007;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104811224 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.717;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8408;ERATE=0.0005;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104811230 . CAGA C 2071 PASS INDEL;BAVGPOST=0.994;BRSQ=0.891;LDAF=0.0265;AVGPOST=0.9920;RSQ=0.8789;ERATE=0.0006;THETA=0.0006;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 104811511 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104811547 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5181;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104811552 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0094;AVGPOST=0.9991;RSQ=0.9558;ERATE=0.0004;THETA=0.0007;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104811588 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0120;AVGPOST=0.9999;RSQ=0.9944;ERATE=0.0003;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104811675 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6612;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104811715 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9525;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104811899 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104811920 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104812016 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104812039 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0034;AVGPOST=0.9980;RSQ=0.8417;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104812057 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0629;AVGPOST=0.9951;RSQ=0.9699;ERATE=0.0005;THETA=0.0006;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 104812090 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.893;LDAF=0.0032;AVGPOST=0.9980;RSQ=0.7746;ERATE=0.0004;THETA=0.0067;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104812305 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.717;LDAF=0.0011;AVGPOST=0.9984;RSQ=0.4008;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104812539 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8525;ERATE=0.0004;THETA=0.0036;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104812649 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4206;ERATE=0.0004;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104812786 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.878;LDAF=0.0063;AVGPOST=0.9935;RSQ=0.5896;ERATE=0.0022;THETA=0.0029;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104812791 . GC G 367 PASS INDEL;BAVGPOST=0.995;BRSQ=0.580;LDAF=0.0080;AVGPOST=0.9934;RSQ=0.6672;ERATE=0.0008;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104812843 . CGTCCCTG C 105 PASS INDEL;BAVGPOST=0.999;BRSQ=0.776;LDAF=0.0074;AVGPOST=0.9892;RSQ=0.4178;ERATE=0.0016;THETA=0.0041;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104812869 rs79897123 CCCTGGTG C 314 PASS INDEL;BAVGPOST=0.998;BRSQ=0.748;LDAF=0.0066;AVGPOST=0.9932;RSQ=0.5822;ERATE=0.0012;THETA=0.0037;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104812879 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0190;AVGPOST=0.9983;RSQ=0.9625;ERATE=0.0006;THETA=0.0018;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 104813124 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.749;LDAF=0.0023;AVGPOST=0.9974;RSQ=0.5639;ERATE=0.0006;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104813126 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.764;LDAF=0.0040;AVGPOST=0.9982;RSQ=0.8200;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104813201 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.891;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.9104;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104813362 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.782;LDAF=0.0040;AVGPOST=0.9971;RSQ=0.7130;ERATE=0.0005;THETA=0.0017;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104813393 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.905;LDAF=0.0059;AVGPOST=0.9992;RSQ=0.9498;ERATE=0.0004;THETA=0.0015;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104813580 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.576;LDAF=0.0037;AVGPOST=0.9963;RSQ=0.6287;ERATE=0.0005;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104813598 . G GAT 1348 PASS INDEL;BAVGPOST=0.996;BRSQ=0.857;LDAF=0.0132;AVGPOST=0.9950;RSQ=0.8482;ERATE=0.0013;THETA=0.0057;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 104813830 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0049;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104813842 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.677;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4845;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104814125 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104814191 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6999;ERATE=0.0005;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104814230 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104814257 . ATCT A 111 PASS INDEL;BAVGPOST=0.998;BRSQ=0.498;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4676;ERATE=0.0005;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104814344 . C CT 1354 PASS INDEL;BAVGPOST=0.944;BRSQ=0.623;LDAF=0.1076;AVGPOST=0.8901;RSQ=0.5293;ERATE=0.0165;THETA=0.0061;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 104814360 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.557;LDAF=0.0016;AVGPOST=0.9980;RSQ=0.5113;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104814391 . T TG 307 PASS INDEL;BAVGPOST=0.993;BRSQ=0.656;LDAF=0.0120;AVGPOST=0.9878;RSQ=0.6069;ERATE=0.0019;THETA=0.0014;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104814416 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0023;AVGPOST=0.9969;RSQ=0.4505;ERATE=0.0005;THETA=0.0033;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104814499 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.887;LDAF=0.0518;AVGPOST=0.9849;RSQ=0.8864;ERATE=0.0015;THETA=0.0097;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 104814575 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.951;LDAF=0.0274;AVGPOST=0.9960;RSQ=0.9445;ERATE=0.0003;THETA=0.0097;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 104814646 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.574;LDAF=0.0061;AVGPOST=0.9920;RSQ=0.5142;ERATE=0.0012;THETA=0.0023;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104814743 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.735;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.3588;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104814862 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0025;AVGPOST=0.9987;RSQ=0.7690;ERATE=0.0004;THETA=0.0038;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104814954 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.771;LDAF=0.0080;AVGPOST=0.9968;RSQ=0.8412;ERATE=0.0007;THETA=0.0036;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104815025 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104815047 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5966;ERATE=0.0003;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104815155 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.5607;ERATE=0.0005;THETA=0.0063;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104815179 . CTTCCTTTTTG C 351 PASS INDEL;BAVGPOST=0.999;BRSQ=0.653;LDAF=0.0043;AVGPOST=0.9968;RSQ=0.6879;ERATE=0.0005;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104815351 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6288;ERATE=0.0004;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104815374 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6850;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104815383 . CT C 288 PASS INDEL;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7851;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104815405 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5993;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104815407 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.460;LDAF=0.0081;AVGPOST=0.9908;RSQ=0.5101;ERATE=0.0008;THETA=0.0088;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104815617 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.912;LDAF=0.0147;AVGPOST=0.9887;RSQ=0.7028;ERATE=0.0007;THETA=0.0013;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104815669 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.713;LDAF=0.0334;AVGPOST=0.9564;RSQ=0.5016;ERATE=0.0014;THETA=0.0009;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 104815781 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.516;LDAF=0.0266;AVGPOST=0.9665;RSQ=0.4984;ERATE=0.0020;THETA=0.0022;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 104815879 . C CA 29 PASS INDEL;BAVGPOST=0.675;BRSQ=0.016;LDAF=0.2159;AVGPOST=0.6865;RSQ=0.2225;ERATE=0.0207;THETA=0.0054;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 104815997 . A AGGCCGC 199 PASS INDEL;BAVGPOST=0.932;BRSQ=0.033;LDAF=0.1000;AVGPOST=0.8693;RSQ=0.4238;ERATE=0.0054;THETA=0.0044;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 104816151 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.907;BRSQ=0.207;LDAF=0.0919;AVGPOST=0.8996;RSQ=0.5477;ERATE=0.0027;THETA=0.0008;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 104816249 . CTCGTCG C 205 PASS INDEL;BAVGPOST=0.958;BRSQ=0.106;LDAF=0.0443;AVGPOST=0.9544;RSQ=0.5795;ERATE=0.0014;THETA=0.0005;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 104816323 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.843;LDAF=0.0145;AVGPOST=0.9888;RSQ=0.6801;ERATE=0.0012;THETA=0.0033;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104816584 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.9013;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104816923 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.761;LDAF=0.0023;AVGPOST=0.9982;RSQ=0.6836;ERATE=0.0006;THETA=0.0254;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104817093 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0006;AVGPOST=0.9989;RSQ=0.1610;ERATE=0.0004;THETA=0.0181;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104817212 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.707;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7793;ERATE=0.0004;THETA=0.0034;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104817233 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0072;AVGPOST=0.9976;RSQ=0.8894;ERATE=0.0003;THETA=0.0165;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104817338 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.944;LDAF=0.8639;AVGPOST=0.9770;RSQ=0.9313;ERATE=0.0007;THETA=0.0151;AC=1897;AN=2184 GT:DS:GL:BD 0.86858976 1 1 104817371 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0073;AVGPOST=0.9997;RSQ=0.9822;ERATE=0.0003;THETA=0.0125;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104817504 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0160;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104817505 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.983;LDAF=0.2866;AVGPOST=0.9858;RSQ=0.9742;ERATE=0.0012;THETA=0.0043;AC=624;AN=2184 GT:DS:GL:BD 0.28571430 0 1 104817515 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9267;ERATE=0.0004;THETA=0.0025;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104817538 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9881;ERATE=0.0003;THETA=0.0078;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104817587 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6466;ERATE=0.0004;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104817705 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.970;LDAF=0.7123;AVGPOST=0.9853;RSQ=0.9718;ERATE=0.0028;THETA=0.0025;AC=1557;AN=2184 GT:DS:GL:BD 0.71291208 1 1 104817725 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0044;AVGPOST=0.9986;RSQ=0.8656;ERATE=0.0015;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104817860 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.963;LDAF=0.0116;AVGPOST=0.9981;RSQ=0.9329;ERATE=0.0006;THETA=0.0007;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104817881 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.797;LDAF=0.0033;AVGPOST=0.9988;RSQ=0.8413;ERATE=0.0003;THETA=0.0018;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104817915 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.730;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.5733;ERATE=0.0004;THETA=0.0024;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104817954 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4709;ERATE=0.0005;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104817986 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0035;AVGPOST=0.9985;RSQ=0.8109;ERATE=0.0004;THETA=0.0073;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104817989 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0728;AVGPOST=0.9979;RSQ=0.9889;ERATE=0.0003;THETA=0.0010;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 104818048 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6952;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104818113 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.1001;AVGPOST=0.9969;RSQ=0.9903;ERATE=0.0004;THETA=0.0005;AC=220;AN=2184 GT:DS:GL:BD 0.10073260 0 1 104818144 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6395;ERATE=0.0004;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104818146 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5345;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104818407 . TG T 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4275;ERATE=0.0004;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104818423 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.7722;ERATE=0.0006;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104818452 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.0933;AVGPOST=0.9966;RSQ=0.9891;ERATE=0.0003;THETA=0.0004;AC=203;AN=2184 GT:DS:GL:BD 0.09294872 0 1 104818477 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104818531 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0113;AVGPOST=0.9987;RSQ=0.9512;ERATE=0.0003;THETA=0.0015;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104818569 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0725;AVGPOST=0.9991;RSQ=0.9948;ERATE=0.0003;THETA=0.0017;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 104818575 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0053;AVGPOST=0.9984;RSQ=0.8616;ERATE=0.0005;THETA=0.0022;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104818578 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104818609 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.810;LDAF=0.0010;AVGPOST=0.9986;RSQ=0.5335;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104818732 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104818879 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6392;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104818881 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5212;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104818920 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0053;AVGPOST=0.9982;RSQ=0.8441;ERATE=0.0005;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104818951 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.734;LDAF=0.0033;AVGPOST=0.9974;RSQ=0.6574;ERATE=0.0008;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104819087 . C CA 4841 PASS INDEL;BAVGPOST=0.993;BRSQ=0.952;LDAF=0.0741;AVGPOST=0.9968;RSQ=0.9813;ERATE=0.0007;THETA=0.0005;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 104819180 . AT A 11193 PASS INDEL;BAVGPOST=0.849;BRSQ=0.691;LDAF=0.3509;AVGPOST=0.8324;RSQ=0.7003;ERATE=0.0293;THETA=0.0008;AC=742;AN=2184 GT:DS:GL:BD 0.33974358 0 1 104819228 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104819317 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2543;AVGPOST=0.9956;RSQ=0.9905;ERATE=0.0005;THETA=0.0007;AC=554;AN=2184 GT:DS:GL:BD 0.25366300 0 1 104819482 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.995;LDAF=0.6686;AVGPOST=0.9938;RSQ=0.9897;ERATE=0.0005;THETA=0.0005;AC=1461;AN=2184 GT:DS:GL:BD 0.66895604 1 1 104819604 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6343;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104819666 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.790;LDAF=0.0061;AVGPOST=0.9964;RSQ=0.7522;ERATE=0.0011;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104819715 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0030;AVGPOST=0.9976;RSQ=0.6902;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104819746 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8845;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104819929 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0062;AVGPOST=0.9972;RSQ=0.8144;ERATE=0.0006;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104820054 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.715;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5149;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104820086 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.607;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.4342;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104820093 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0005;AVGPOST=0.9994;RSQ=0.4869;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104820250 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0026;AVGPOST=0.9990;RSQ=0.8554;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104820251 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0086;AVGPOST=0.9992;RSQ=0.9551;ERATE=0.0004;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104820286 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.958;LDAF=0.3848;AVGPOST=0.9775;RSQ=0.9655;ERATE=0.0031;THETA=0.0005;AC=845;AN=2184 GT:DS:GL:BD 0.38690478 0 1 104820324 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.863;LDAF=0.0067;AVGPOST=0.9934;RSQ=0.5650;ERATE=0.0019;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104820360 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.767;LDAF=0.0037;AVGPOST=0.9973;RSQ=0.7042;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104820448 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0727;AVGPOST=0.9997;RSQ=0.9979;ERATE=0.0003;THETA=0.0005;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 104820731 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.520;LDAF=0.0018;AVGPOST=0.9996;RSQ=0.9084;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104820757 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0062;AVGPOST=0.9995;RSQ=0.9635;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104820763 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8312;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104820790 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8358;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104820964 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7632;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104821022 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.0980;AVGPOST=0.9981;RSQ=0.9937;ERATE=0.0003;THETA=0.0003;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 104821052 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.724;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104821418 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6237;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104821422 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0071;AVGPOST=0.9993;RSQ=0.9609;ERATE=0.0005;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104821485 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9624;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104821554 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0062;AVGPOST=0.9994;RSQ=0.9552;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104821560 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.1997;AVGPOST=0.9965;RSQ=0.9903;ERATE=0.0006;THETA=0.0004;AC=435;AN=2184 GT:DS:GL:BD 0.19917582 0 1 104821664 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7961;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104821753 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104821826 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0053;AVGPOST=0.9969;RSQ=0.7618;ERATE=0.0031;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104821889 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104821938 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.8443;AVGPOST=0.9963;RSQ=0.9892;ERATE=0.0005;THETA=0.0013;AC=1846;AN=2184 GT:DS:GL:BD 0.84523809 1 1 104822076 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.667;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6029;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104822084 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.5387;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104822217 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0077;AVGPOST=0.9985;RSQ=0.9281;ERATE=0.0004;THETA=0.0011;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104822220 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.7979;ERATE=0.0004;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104822255 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0026;AVGPOST=0.9975;RSQ=0.5715;ERATE=0.0008;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104822257 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0043;AVGPOST=0.9988;RSQ=0.8798;ERATE=0.0007;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104822322 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8165;ERATE=0.0005;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104822424 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0074;AVGPOST=0.9984;RSQ=0.9132;ERATE=0.0004;THETA=0.0015;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104822435 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.0559;AVGPOST=0.9994;RSQ=0.9959;ERATE=0.0004;THETA=0.0005;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 104822501 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7550;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104822506 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.0555;AVGPOST=0.9997;RSQ=0.9977;ERATE=0.0003;THETA=0.0008;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 104822615 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.938;LDAF=0.8151;AVGPOST=0.9637;RSQ=0.9069;ERATE=0.0066;THETA=0.0007;AC=1800;AN=2184 GT:DS:GL:BD 0.82417583 1 1 104822674 rs34274170 TC T 7522 PASS INDEL;BAVGPOST=0.993;BRSQ=0.955;LDAF=0.0560;AVGPOST=0.9943;RSQ=0.9637;ERATE=0.0009;THETA=0.0006;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 104822724 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.942;LDAF=0.0506;AVGPOST=0.9951;RSQ=0.9673;ERATE=0.0005;THETA=0.0018;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 104822774 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0084;AVGPOST=0.9989;RSQ=0.9420;ERATE=0.0004;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 104822796 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0177;AVGPOST=0.9990;RSQ=0.9741;ERATE=0.0005;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 104822827 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.712;LDAF=0.0025;AVGPOST=0.9967;RSQ=0.4609;ERATE=0.0006;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104822906 . CTG C 1549 PASS INDEL;BAVGPOST=0.996;BRSQ=0.941;LDAF=0.0339;AVGPOST=0.9954;RSQ=0.9512;ERATE=0.0006;THETA=0.0010;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 104822911 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.971;LDAF=0.0653;AVGPOST=0.9978;RSQ=0.9858;ERATE=0.0003;THETA=0.0007;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 104823212 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6835;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104823318 . AACAC A 320 PASS INDEL;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4770;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104823347 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7880;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104823445 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7584;ERATE=0.0004;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104823477 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104823498 . AG A 77 PASS INDEL;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5938;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104823507 . GGAGAT G 541 PASS INDEL;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0041;AVGPOST=0.9984;RSQ=0.8376;ERATE=0.0003;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104823522 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5442;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104823624 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104823674 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0645;AVGPOST=0.9984;RSQ=0.9903;ERATE=0.0004;THETA=0.0005;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 104823687 . T TG 443 PASS INDEL;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0054;AVGPOST=0.9984;RSQ=0.8619;ERATE=0.0005;THETA=0.0013;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104823713 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.618;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104823731 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0557;AVGPOST=0.9989;RSQ=0.9934;ERATE=0.0005;THETA=0.0009;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 104823769 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0548;AVGPOST=0.9998;RSQ=0.9986;ERATE=0.0003;THETA=0.0003;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 104823894 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0551;AVGPOST=0.9994;RSQ=0.9958;ERATE=0.0004;THETA=0.0005;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 104823935 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8951;ERATE=0.0003;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104823936 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0016;AVGPOST=0.9981;RSQ=0.5527;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104823991 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0010;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104824005 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0549;AVGPOST=0.9999;RSQ=0.9990;ERATE=0.0003;THETA=0.0010;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 104824132 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5816;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104824207 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0554;AVGPOST=0.9988;RSQ=0.9915;ERATE=0.0006;THETA=0.0004;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 104824264 . C CT 116 PASS INDEL;BAVGPOST=0.996;BRSQ=0.569;LDAF=0.0140;AVGPOST=0.9800;RSQ=0.4243;ERATE=0.0046;THETA=0.0031;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104824264 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5890;ERATE=0.0007;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104824298 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7124;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104824300 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.713;LDAF=0.0020;AVGPOST=0.9983;RSQ=0.6155;ERATE=0.0005;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104824392 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.869;LDAF=0.0066;AVGPOST=0.9959;RSQ=0.7762;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104824425 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1539;AVGPOST=0.9982;RSQ=0.9951;ERATE=0.0004;THETA=0.0010;AC=336;AN=2184 GT:DS:GL:BD 0.15384616 0 1 104824461 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0170;AVGPOST=0.9997;RSQ=0.9923;ERATE=0.0004;THETA=0.0008;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104824647 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8346;AVGPOST=0.9979;RSQ=0.9941;ERATE=0.0003;THETA=0.0007;AC=1821;AN=2184 GT:DS:GL:BD 0.83379120 1 1 104824669 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0354;AVGPOST=0.9988;RSQ=0.9887;ERATE=0.0003;THETA=0.0004;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 104824681 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0065;AVGPOST=0.9986;RSQ=0.9077;ERATE=0.0004;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104824818 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.839;LDAF=0.0063;AVGPOST=0.9940;RSQ=0.6374;ERATE=0.0019;THETA=0.0013;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104824829 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8452;ERATE=0.0004;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104824997 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104824999 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.6329;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104825008 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0044;AVGPOST=0.9988;RSQ=0.9122;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104825065 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104825316 . GA G 81 PASS INDEL;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6448;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104825329 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0055;AVGPOST=0.9990;RSQ=0.9300;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104825332 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0042;AVGPOST=0.9983;RSQ=0.8377;ERATE=0.0004;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104825425 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.702;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0005;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104825490 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8879;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104825562 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7901;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104825567 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4549;ERATE=0.0007;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104825702 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.619;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4524;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104825715 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104825903 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104825913 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104825933 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9921;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104825951 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104826031 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0045;AVGPOST=0.9999;RSQ=0.9903;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104826059 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0014;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104826063 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0013;AVGPOST=1.0000;RSQ=0.9839;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104826081 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0169;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0014;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104826085 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104826196 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0315;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 104826240 . CG C 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0047;AVGPOST=0.9915;RSQ=0.2823;ERATE=0.0007;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104826264 . A AC 20 PASS INDEL;BAVGPOST=1.000;BRSQ=0.737;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.5465;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104826286 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104826351 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104826433 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8890;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104826436 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9359;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104826525 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0032;AVGPOST=0.9991;RSQ=0.9030;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104826587 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0089;AVGPOST=0.9993;RSQ=0.9642;ERATE=0.0004;THETA=0.0010;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 104826633 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8341;AVGPOST=0.9975;RSQ=0.9930;ERATE=0.0004;THETA=0.0007;AC=1821;AN=2184 GT:DS:GL:BD 0.83379120 1 1 104826711 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104826715 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7365;AVGPOST=0.9970;RSQ=0.9941;ERATE=0.0005;THETA=0.0027;AC=1608;AN=2184 GT:DS:GL:BD 0.73626375 1 1 104826729 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.987;LDAF=0.8327;AVGPOST=0.9963;RSQ=0.9884;ERATE=0.0008;THETA=0.0007;AC=1821;AN=2184 GT:DS:GL:BD 0.83379120 1 1 104826779 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.987;LDAF=0.8334;AVGPOST=0.9980;RSQ=0.9943;ERATE=0.0005;THETA=0.0009;AC=1821;AN=2184 GT:DS:GL:BD 0.83379120 1 1 104826784 . T TG 539 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9531;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104826800 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0051;AVGPOST=0.9987;RSQ=0.8883;ERATE=0.0005;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104826828 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0020;AVGPOST=0.9977;RSQ=0.5664;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104826834 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.900;LDAF=0.0229;AVGPOST=0.9930;RSQ=0.8738;ERATE=0.0006;THETA=0.0010;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 104826879 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.770;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.6153;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104827149 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6673;AVGPOST=0.9989;RSQ=0.9980;ERATE=0.0004;THETA=0.0010;AC=1456;AN=2184 GT:DS:GL:BD 0.66666669 1 1 104827190 . TG T 1631 PASS INDEL;BAVGPOST=0.995;BRSQ=0.892;LDAF=0.0156;AVGPOST=0.9957;RSQ=0.8817;ERATE=0.0006;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 104827271 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.551;LDAF=0.0021;AVGPOST=0.9966;RSQ=0.2922;ERATE=0.0008;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104827522 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0082;AVGPOST=0.9983;RSQ=0.9189;ERATE=0.0003;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 104827558 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.851;BRSQ=0.677;LDAF=0.2596;AVGPOST=0.8563;RSQ=0.7418;ERATE=0.0121;THETA=0.0009;AC=586;AN=2184 GT:DS:GL:BD 0.26831502 0 1 104827671 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.730;LDAF=0.0324;AVGPOST=0.9866;RSQ=0.8757;ERATE=0.0008;THETA=0.0021;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 104827682 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0035;AVGPOST=0.9984;RSQ=0.8039;ERATE=0.0004;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104827754 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0043;AVGPOST=0.9982;RSQ=0.8031;ERATE=0.0005;THETA=0.0012;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104827755 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.937;LDAF=0.0118;AVGPOST=0.9979;RSQ=0.9353;ERATE=0.0004;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 104827759 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.716;LDAF=0.0034;AVGPOST=0.9967;RSQ=0.5932;ERATE=0.0007;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104827804 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0174;AVGPOST=0.9972;RSQ=0.9434;ERATE=0.0004;THETA=0.0018;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104827874 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.848;LDAF=0.0076;AVGPOST=0.9987;RSQ=0.9303;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104827894 . AT A 38 PASS INDEL;BAVGPOST=0.992;BRSQ=0.470;LDAF=0.0097;AVGPOST=0.9871;RSQ=0.4306;ERATE=0.0029;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104827926 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.864;BRSQ=0.559;LDAF=0.1567;AVGPOST=0.8716;RSQ=0.6692;ERATE=0.0150;THETA=0.0005;AC=288;AN=2184 GT:DS:GL:BD 0.13186814 0 1 104827929 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.936;BRSQ=0.423;LDAF=0.0709;AVGPOST=0.9249;RSQ=0.5837;ERATE=0.0067;THETA=0.0012;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 104827934 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0072;AVGPOST=0.9916;RSQ=0.5425;ERATE=0.0007;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104827956 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.668;LDAF=0.0017;AVGPOST=0.9980;RSQ=0.5752;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104828215 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.411;LDAF=0.0042;AVGPOST=0.9952;RSQ=0.5263;ERATE=0.0006;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104828238 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0021;AVGPOST=0.9988;RSQ=0.7986;ERATE=0.0006;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104828366 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.987;LDAF=0.5870;AVGPOST=0.9883;RSQ=0.9822;ERATE=0.0005;THETA=0.0007;AC=1283;AN=2184 GT:DS:GL:BD 0.58745420 1 1 104828405 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.721;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5729;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104828428 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104828477 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104828529 . TAGA T 61 PASS INDEL;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5205;ERATE=0.0004;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104828568 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3678;AVGPOST=0.9987;RSQ=0.9976;ERATE=0.0004;THETA=0.0005;AC=805;AN=2184 GT:DS:GL:BD 0.36858973 0 1 104828572 . TGA T 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104828595 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6168;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104828627 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3685;AVGPOST=0.9971;RSQ=0.9949;ERATE=0.0005;THETA=0.0008;AC=805;AN=2184 GT:DS:GL:BD 0.36858973 0 1 104828652 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9032;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104828674 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8278;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104828718 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8316;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104828776 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3680;AVGPOST=0.9982;RSQ=0.9968;ERATE=0.0007;THETA=0.0006;AC=805;AN=2184 GT:DS:GL:BD 0.36858973 0 1 104828786 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.720;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8648;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104828790 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8764;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104828791 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.463;LDAF=0.0056;AVGPOST=0.9947;RSQ=0.6673;ERATE=0.0009;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104828853 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7117;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104829058 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0001;AVGPOST=0.9999;RSQ=0.0499;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104829084 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104829217 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8079;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104829218 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3677;AVGPOST=0.9984;RSQ=0.9971;ERATE=0.0005;THETA=0.0004;AC=804;AN=2184 GT:DS:GL:BD 0.36813188 0 1 104829263 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8237;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104829288 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7461;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104829292 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.7081;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104829304 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3676;AVGPOST=0.9989;RSQ=0.9979;ERATE=0.0004;THETA=0.0007;AC=804;AN=2184 GT:DS:GL:BD 0.36813188 0 1 104829305 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0380;AVGPOST=0.9997;RSQ=0.9965;ERATE=0.0003;THETA=0.0005;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 104829333 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.873;LDAF=0.0082;AVGPOST=0.9990;RSQ=0.9466;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104829351 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104829380 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3672;AVGPOST=0.9971;RSQ=0.9957;ERATE=0.0004;THETA=0.0008;AC=804;AN=2184 GT:DS:GL:BD 0.36813188 0 1 104829383 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.938;LDAF=0.0112;AVGPOST=0.9986;RSQ=0.9570;ERATE=0.0003;THETA=0.0002;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 104829407 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.3457;AVGPOST=0.9973;RSQ=0.9954;ERATE=0.0003;THETA=0.0002;AC=757;AN=2184 GT:DS:GL:BD 0.34661171 0 1 104829425 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4092;AVGPOST=0.9989;RSQ=0.9982;ERATE=0.0003;THETA=0.0027;AC=895;AN=2184 GT:DS:GL:BD 0.40979853 0 1 104829504 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104829649 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3572;AVGPOST=0.9966;RSQ=0.9947;ERATE=0.0003;THETA=0.0015;AC=781;AN=2184 GT:DS:GL:BD 0.35760072 0 1 104829655 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3578;AVGPOST=0.9968;RSQ=0.9948;ERATE=0.0003;THETA=0.0054;AC=782;AN=2184 GT:DS:GL:BD 0.35805860 0 1 104829657 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0038;AVGPOST=0.9990;RSQ=0.9142;ERATE=0.0003;THETA=0.0074;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104829695 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.982;LDAF=0.3475;AVGPOST=0.9859;RSQ=0.9770;ERATE=0.0032;THETA=0.0033;AC=758;AN=2184 GT:DS:GL:BD 0.34706959 0 1 104829815 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0074;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104829820 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0078;AVGPOST=0.9995;RSQ=0.9691;ERATE=0.0004;THETA=0.0034;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 104829914 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.9040;ERATE=0.0003;THETA=0.0022;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104829921 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5667;ERATE=0.0004;THETA=0.0138;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104830064 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0029;AVGPOST=0.9985;RSQ=0.7805;ERATE=0.0004;THETA=0.0039;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104830134 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6838;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104830135 . GC G 114 PASS INDEL;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0052;AVGPOST=0.9963;RSQ=0.7115;ERATE=0.0009;THETA=0.0094;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104830142 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.969;LDAF=0.2362;AVGPOST=0.9829;RSQ=0.9705;ERATE=0.0005;THETA=0.0062;AC=516;AN=2184 GT:DS:GL:BD 0.23626374 0 1 104830216 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.960;LDAF=0.3771;AVGPOST=0.9768;RSQ=0.9640;ERATE=0.0017;THETA=0.0064;AC=824;AN=2184 GT:DS:GL:BD 0.37728938 0 1 104830239 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.875;LDAF=0.0099;AVGPOST=0.9978;RSQ=0.9217;ERATE=0.0006;THETA=0.0069;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 104830246 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.939;LDAF=0.0141;AVGPOST=0.9960;RSQ=0.8996;ERATE=0.0005;THETA=0.0217;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104830319 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0043;AVGPOST=0.9986;RSQ=0.8837;ERATE=0.0004;THETA=0.0023;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104830320 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.927;LDAF=0.0118;AVGPOST=0.9965;RSQ=0.8873;ERATE=0.0005;THETA=0.0094;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 104830336 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6533;ERATE=0.0003;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104830344 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0024;AVGPOST=0.9993;RSQ=0.8799;ERATE=0.0003;THETA=0.0047;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104830527 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8634;ERATE=0.0003;THETA=0.0089;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104830590 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8185;ERATE=0.0003;THETA=0.0089;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104830693 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.906;LDAF=0.0149;AVGPOST=0.9971;RSQ=0.9209;ERATE=0.0004;THETA=0.0151;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104830714 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.971;LDAF=0.7235;AVGPOST=0.9856;RSQ=0.9776;ERATE=0.0007;THETA=0.0012;AC=1582;AN=2184 GT:DS:GL:BD 0.72435898 1 1 104830747 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104830840 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7530;ERATE=0.0003;THETA=0.0091;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104830848 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.853;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8265;ERATE=0.0004;THETA=0.0214;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104830889 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.989;LDAF=0.4336;AVGPOST=0.9936;RSQ=0.9919;ERATE=0.0006;THETA=0.0038;AC=948;AN=2184 GT:DS:GL:BD 0.43406594 0 1 104830916 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6442;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104830946 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0032;AVGPOST=0.9997;RSQ=0.9603;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104830956 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.4339;AVGPOST=0.9960;RSQ=0.9945;ERATE=0.0004;THETA=0.0047;AC=949;AN=2184 GT:DS:GL:BD 0.43452382 0 1 104830973 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0041;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104831065 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.991;LDAF=0.4307;AVGPOST=0.9915;RSQ=0.9886;ERATE=0.0010;THETA=0.0010;AC=943;AN=2184 GT:DS:GL:BD 0.43177655 0 1 104831101 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9385;ERATE=0.0003;THETA=0.0061;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104831284 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.978;LDAF=0.0841;AVGPOST=0.9907;RSQ=0.9645;ERATE=0.0005;THETA=0.0068;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 104831299 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0052;AVGPOST=0.9983;RSQ=0.8594;ERATE=0.0004;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104831305 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6982;ERATE=0.0003;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104831352 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0065;AVGPOST=0.9996;RSQ=0.9738;ERATE=0.0003;THETA=0.0014;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104831412 . C CCT 18989 PASS INDEL;BAVGPOST=0.988;BRSQ=0.943;LDAF=0.0970;AVGPOST=0.9896;RSQ=0.9603;ERATE=0.0004;THETA=0.0013;AC=213;AN=2184 GT:DS:GL:BD 0.09752747 0 1 104831436 . T TC 3021 PASS INDEL;BAVGPOST=0.987;BRSQ=0.938;LDAF=0.0971;AVGPOST=0.9896;RSQ=0.9605;ERATE=0.0003;THETA=0.0086;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 104831438 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0497;AVGPOST=0.9970;RSQ=0.9789;ERATE=0.0003;THETA=0.0109;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 104831453 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0111;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104831510 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8093;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104831547 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7297;ERATE=0.0003;THETA=0.0050;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104831587 . AGGAAAATGT A 9402 PASS INDEL;BAVGPOST=0.987;BRSQ=0.941;LDAF=0.1008;AVGPOST=0.9894;RSQ=0.9522;ERATE=0.0009;THETA=0.0017;AC=218;AN=2184 GT:DS:GL:BD 0.09981685 0 1 104831612 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.972;LDAF=0.0652;AVGPOST=0.9934;RSQ=0.9643;ERATE=0.0004;THETA=0.0010;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 104831656 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7765;ERATE=0.0003;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104831679 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.981;LDAF=0.1893;AVGPOST=0.9902;RSQ=0.9762;ERATE=0.0005;THETA=0.0047;AC=415;AN=2184 GT:DS:GL:BD 0.19001831 0 1 104831718 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.970;LDAF=0.0614;AVGPOST=0.9944;RSQ=0.9680;ERATE=0.0004;THETA=0.0007;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 104831734 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.975;LDAF=0.0898;AVGPOST=0.9916;RSQ=0.9662;ERATE=0.0005;THETA=0.0012;AC=197;AN=2184 GT:DS:GL:BD 0.09020147 0 1 104831744 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.969;LDAF=0.0625;AVGPOST=0.9951;RSQ=0.9721;ERATE=0.0004;THETA=0.0057;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 104831757 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.635;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7533;ERATE=0.0003;THETA=0.0063;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104831902 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0133;AVGPOST=0.9989;RSQ=0.9663;ERATE=0.0003;THETA=0.0018;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 104831913 . C CA 7941 PASS INDEL;BAVGPOST=0.994;BRSQ=0.954;LDAF=0.0609;AVGPOST=0.9970;RSQ=0.9807;ERATE=0.0004;THETA=0.0054;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 104831948 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104832030 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0650;AVGPOST=0.9989;RSQ=0.9930;ERATE=0.0003;THETA=0.0007;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 104832036 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.976;LDAF=0.0455;AVGPOST=0.9980;RSQ=0.9820;ERATE=0.0005;THETA=0.0041;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 104832122 . GA G 4981 PASS INDEL;BAVGPOST=0.989;BRSQ=0.915;LDAF=0.0543;AVGPOST=0.9907;RSQ=0.9387;ERATE=0.0004;THETA=0.0025;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 104832142 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0025;AVGPOST=0.9976;RSQ=0.6220;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104832239 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0628;AVGPOST=0.9984;RSQ=0.9890;ERATE=0.0004;THETA=0.0034;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 104832242 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6199;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104832454 rs34269715 T TA 32516 PASS INDEL;BAVGPOST=0.840;BRSQ=0.756;LDAF=0.5601;AVGPOST=0.8292;RSQ=0.7643;ERATE=0.0298;THETA=0.0010;AC=1247;AN=2184 GT:DS:GL:BD 0.57097071 1 1 104832483 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9179;ERATE=0.0004;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104832494 . T TG 155 PASS INDEL;BAVGPOST=0.957;BRSQ=0.320;LDAF=0.0775;AVGPOST=0.8865;RSQ=0.3587;ERATE=0.0156;THETA=0.0003;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 104832499 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0128;AVGPOST=0.9983;RSQ=0.9402;ERATE=0.0005;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104832518 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.715;LDAF=0.0264;AVGPOST=0.9852;RSQ=0.7703;ERATE=0.0005;THETA=0.0006;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 104832522 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.690;LDAF=0.0359;AVGPOST=0.9846;RSQ=0.8228;ERATE=0.0006;THETA=0.0004;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 104832597 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.897;LDAF=0.9636;AVGPOST=0.9903;RSQ=0.8859;ERATE=0.0013;THETA=0.0004;AC=2108;AN=2184 GT:DS:GL:BD 0.96520144 1 1 104832926 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0070;AVGPOST=0.9957;RSQ=0.7700;ERATE=0.0005;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104832942 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0041;AVGPOST=0.9990;RSQ=0.8893;ERATE=0.0004;THETA=0.0017;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104833001 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9975;RSQ=0.8303;ERATE=0.0004;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104833010 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0027;AVGPOST=0.9966;RSQ=0.5349;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104833013 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0038;AVGPOST=0.9961;RSQ=0.5824;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104833242 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.626;LDAF=0.0031;AVGPOST=0.9983;RSQ=0.7827;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104833325 . TG T 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.703;LDAF=0.0057;AVGPOST=0.9941;RSQ=0.5420;ERATE=0.0009;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104833340 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.982;LDAF=0.9476;AVGPOST=0.9989;RSQ=0.9915;ERATE=0.0003;THETA=0.0004;AC=2070;AN=2184 GT:DS:GL:BD 0.94780219 1 1 104833359 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.1042;AVGPOST=0.9990;RSQ=0.9952;ERATE=0.0004;THETA=0.0011;AC=228;AN=2184 GT:DS:GL:BD 0.10439561 0 1 104833464 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7644;AVGPOST=0.9991;RSQ=0.9982;ERATE=0.0003;THETA=0.0004;AC=1670;AN=2184 GT:DS:GL:BD 0.76465201 1 1 104833476 . TA T 805 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9980;RSQ=0.8589;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104833490 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.729;LDAF=0.0068;AVGPOST=0.9947;RSQ=0.7069;ERATE=0.0006;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104833494 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7562;AVGPOST=0.9980;RSQ=0.9959;ERATE=0.0005;THETA=0.0004;AC=1653;AN=2184 GT:DS:GL:BD 0.75686812 1 1 104833586 . C CG 34 PASS INDEL;BAVGPOST=0.998;BRSQ=0.547;LDAF=0.0032;AVGPOST=0.9972;RSQ=0.6065;ERATE=0.0007;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104833627 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0033;AVGPOST=0.9975;RSQ=0.7228;ERATE=0.0007;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104833724 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9603;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104833735 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0251;AVGPOST=0.9996;RSQ=0.9938;ERATE=0.0003;THETA=0.0004;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 104833780 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9461;AVGPOST=0.9964;RSQ=0.9722;ERATE=0.0005;THETA=0.0005;AC=2070;AN=2184 GT:DS:GL:BD 0.94780219 1 1 104833980 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.990;LDAF=0.7531;AVGPOST=0.9921;RSQ=0.9879;ERATE=0.0008;THETA=0.0008;AC=1647;AN=2184 GT:DS:GL:BD 0.75412089 1 1 104834084 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6095;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104834086 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8555;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104834114 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9607;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104834198 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0016;AVGPOST=0.9981;RSQ=0.5966;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104834226 . TG T 103 PASS INDEL;BAVGPOST=1.000;BRSQ=0.670;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.5927;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104834313 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1048;AVGPOST=0.9985;RSQ=0.9940;ERATE=0.0004;THETA=0.0005;AC=228;AN=2184 GT:DS:GL:BD 0.10439561 0 1 104834357 . GGA G 134 PASS INDEL;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6524;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104834586 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104834630 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1044;AVGPOST=0.9994;RSQ=0.9970;ERATE=0.0003;THETA=0.0003;AC=228;AN=2184 GT:DS:GL:BD 0.10439561 0 1 104834866 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104834956 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104834963 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9447;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104834992 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6678;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104835048 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7497;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104835068 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6410;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104835115 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0027;AVGPOST=0.9994;RSQ=0.9063;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104835287 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.743;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5057;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104835379 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0226;AVGPOST=0.9996;RSQ=0.9917;ERATE=0.0003;THETA=0.0004;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 104835457 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0258;AVGPOST=0.9984;RSQ=0.9739;ERATE=0.0004;THETA=0.0005;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 104835476 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.942;LDAF=0.0234;AVGPOST=0.9968;RSQ=0.9475;ERATE=0.0007;THETA=0.0004;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 104835538 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.651;LDAF=0.0061;AVGPOST=0.9955;RSQ=0.7123;ERATE=0.0005;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104835616 . CACAA C 1574 PASS INDEL;BAVGPOST=0.998;BRSQ=0.890;LDAF=0.0058;AVGPOST=0.9985;RSQ=0.9021;ERATE=0.0005;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104835818 . CAA C 785 PASS INDEL;BAVGPOST=0.998;BRSQ=0.903;LDAF=0.0065;AVGPOST=0.9981;RSQ=0.8903;ERATE=0.0004;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104835820 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0408;AVGPOST=0.9995;RSQ=0.9945;ERATE=0.0003;THETA=0.0012;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 104835847 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1410;AVGPOST=0.9985;RSQ=0.9955;ERATE=0.0004;THETA=0.0004;AC=307;AN=2184 GT:DS:GL:BD 0.14056776 0 1 104835964 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104836009 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0097;AVGPOST=0.9987;RSQ=0.9471;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104836170 . GGAA G 527 PASS INDEL;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0056;AVGPOST=0.9991;RSQ=0.9299;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104836223 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.8911;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104836560 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.7192;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104836596 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104836715 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0051;AVGPOST=0.9977;RSQ=0.8300;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104836739 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0039;AVGPOST=0.9993;RSQ=0.9198;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104836780 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6169;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104836795 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1227;AVGPOST=0.9994;RSQ=0.9977;ERATE=0.0003;THETA=0.0003;AC=267;AN=2184 GT:DS:GL:BD 0.12225275 0 1 104836951 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.6499;AVGPOST=0.9965;RSQ=0.9945;ERATE=0.0007;THETA=0.0005;AC=1421;AN=2184 GT:DS:GL:BD 0.65064102 1 1 104836978 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0408;AVGPOST=0.9996;RSQ=0.9950;ERATE=0.0003;THETA=0.0019;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 104837015 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5895;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104837084 . GA G 47 PASS INDEL;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104837087 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7566;AVGPOST=0.9991;RSQ=0.9982;ERATE=0.0006;THETA=0.0005;AC=1653;AN=2184 GT:DS:GL:BD 0.75686812 1 1 104837133 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0020;AVGPOST=0.9989;RSQ=0.8284;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104837199 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9465;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104837216 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6419;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104837228 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.985;LDAF=0.8794;AVGPOST=0.9929;RSQ=0.9765;ERATE=0.0016;THETA=0.0006;AC=1925;AN=2184 GT:DS:GL:BD 0.88141024 1 1 104837298 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.6452;AVGPOST=0.9790;RSQ=0.9671;ERATE=0.0025;THETA=0.0004;AC=1420;AN=2184 GT:DS:GL:BD 0.65018314 1 1 104837338 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6526;AVGPOST=0.9974;RSQ=0.9959;ERATE=0.0005;THETA=0.0004;AC=1425;AN=2184 GT:DS:GL:BD 0.65247256 1 1 104837397 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6532;AVGPOST=0.9975;RSQ=0.9956;ERATE=0.0006;THETA=0.0002;AC=1427;AN=2184 GT:DS:GL:BD 0.65338826 1 1 104837402 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4316;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104837410 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.808;LDAF=0.0076;AVGPOST=0.9961;RSQ=0.8233;ERATE=0.0004;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 104837421 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0187;AVGPOST=0.9991;RSQ=0.9817;ERATE=0.0004;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 104837430 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0509;AVGPOST=0.9995;RSQ=0.9956;ERATE=0.0003;THETA=0.0003;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 104837432 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.756;LDAF=0.0024;AVGPOST=0.9986;RSQ=0.7633;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104837473 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8712;ERATE=0.0004;THETA=0.0023;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104837499 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.1941;AVGPOST=0.9968;RSQ=0.9913;ERATE=0.0007;THETA=0.0002;AC=424;AN=2184 GT:DS:GL:BD 0.19413920 0 1 104837596 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.638;LDAF=0.0016;AVGPOST=0.9976;RSQ=0.3747;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104837757 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.640;LDAF=0.0042;AVGPOST=0.9964;RSQ=0.6665;ERATE=0.0007;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 104837773 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0326;AVGPOST=0.9974;RSQ=0.9725;ERATE=0.0004;THETA=0.0004;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 104837790 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0233;AVGPOST=0.9982;RSQ=0.9693;ERATE=0.0005;THETA=0.0006;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 104837820 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0034;AVGPOST=0.9991;RSQ=0.8868;ERATE=0.0005;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104837829 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1949;AVGPOST=0.9974;RSQ=0.9927;ERATE=0.0008;THETA=0.0005;AC=425;AN=2184 GT:DS:GL:BD 0.19459707 0 1 104837897 . G GGA 4611 PASS INDEL;BAVGPOST=0.982;BRSQ=0.924;LDAF=0.1361;AVGPOST=0.9863;RSQ=0.9572;ERATE=0.0004;THETA=0.0007;AC=300;AN=2184 GT:DS:GL:BD 0.13736264 0 1 104838027 rs60878219 A AG 2646 PASS INDEL;BAVGPOST=0.982;BRSQ=0.925;LDAF=0.1357;AVGPOST=0.9861;RSQ=0.9567;ERATE=0.0005;THETA=0.0007;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 104838029 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0308;AVGPOST=0.9991;RSQ=0.9884;ERATE=0.0004;THETA=0.0003;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 104838070 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.5928;ERATE=0.0007;THETA=0.0027;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104838082 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.941;LDAF=0.0242;AVGPOST=0.9977;RSQ=0.9621;ERATE=0.0004;THETA=0.0005;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 104838262 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0060;AVGPOST=0.9989;RSQ=0.9196;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104838348 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104838379 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0051;AVGPOST=0.9997;RSQ=0.9745;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 104838533 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0169;AVGPOST=0.9990;RSQ=0.9783;ERATE=0.0003;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 104838604 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0507;AVGPOST=0.9998;RSQ=0.9985;ERATE=0.0003;THETA=0.0006;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 104838606 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0306;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 104838699 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104838791 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0293;AVGPOST=0.9998;RSQ=0.9973;ERATE=0.0003;THETA=0.0006;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 104838902 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104838903 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104838905 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0017;AVGPOST=0.9995;RSQ=0.8942;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104839034 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4151;AVGPOST=0.9980;RSQ=0.9974;ERATE=0.0003;THETA=0.0004;AC=906;AN=2184 GT:DS:GL:BD 0.41483516 0 1 104839044 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7189;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104839053 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0041;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104839109 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104839130 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0146;AVGPOST=1.0000;RSQ=0.9985;ERATE=0.0003;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 104839181 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0306;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 104839182 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104839209 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104839250 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104839343 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0306;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 104839406 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0507;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 104839443 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104839456 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0197;AVGPOST=0.9999;RSQ=0.9979;ERATE=0.0003;THETA=0.0003;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 104839464 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0041;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104839466 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0068;AVGPOST=1.0000;RSQ=0.9968;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104839609 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104839630 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104839664 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104839667 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.3141;AVGPOST=0.9999;RSQ=0.9997;ERATE=0.0003;THETA=0.0004;AC=686;AN=2184 GT:DS:GL:BD 0.31410256 0 1 104839747 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9460;ERATE=0.0015;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104839814 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104839861 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0093;AVGPOST=0.9996;RSQ=0.9827;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104839925 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9558;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104839958 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104839988 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9921;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104840237 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0152;AVGPOST=0.9998;RSQ=0.9948;ERATE=0.0003;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 104840250 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104840438 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0013;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104840529 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.800;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7843;ERATE=0.0012;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104840572 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0151;AVGPOST=1.0000;RSQ=0.9987;ERATE=0.0003;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 104840653 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0293;AVGPOST=0.9999;RSQ=0.9980;ERATE=0.0003;THETA=0.0008;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 104840701 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6174;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104840705 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0073;AVGPOST=0.9964;RSQ=0.8163;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 104840862 . C CA 34 PASS INDEL;BAVGPOST=0.992;BRSQ=0.508;LDAF=0.0188;AVGPOST=0.9767;RSQ=0.5142;ERATE=0.0038;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 104840937 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.627;LDAF=0.0051;AVGPOST=0.9939;RSQ=0.5647;ERATE=0.0006;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104840938 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0031;AVGPOST=0.9976;RSQ=0.6814;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104841052 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0044;AVGPOST=0.9995;RSQ=0.9448;ERATE=0.0004;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104841090 . AT A 90 PASS INDEL;BAVGPOST=0.993;BRSQ=0.706;LDAF=0.0166;AVGPOST=0.9934;RSQ=0.8492;ERATE=0.0008;THETA=0.0007;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104841108 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.926;LDAF=0.0175;AVGPOST=0.9984;RSQ=0.9647;ERATE=0.0005;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 104841109 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.876;LDAF=0.0070;AVGPOST=0.9990;RSQ=0.9276;ERATE=0.0003;THETA=0.0012;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104841169 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.3138;AVGPOST=0.9973;RSQ=0.9953;ERATE=0.0005;THETA=0.0003;AC=686;AN=2184 GT:DS:GL:BD 0.31410256 0 1 104841220 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.988;LDAF=0.7119;AVGPOST=0.9944;RSQ=0.9902;ERATE=0.0010;THETA=0.0007;AC=1554;AN=2184 GT:DS:GL:BD 0.71153843 1 1 104841234 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2140;AVGPOST=0.9992;RSQ=0.9979;ERATE=0.0003;THETA=0.0004;AC=467;AN=2184 GT:DS:GL:BD 0.21382783 0 1 104841385 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.724;LDAF=0.0198;AVGPOST=0.9943;RSQ=0.8789;ERATE=0.0008;THETA=0.0003;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 104841463 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0244;AVGPOST=0.9972;RSQ=0.9616;ERATE=0.0004;THETA=0.0007;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 104841514 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0030;AVGPOST=0.9985;RSQ=0.7765;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104841554 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0162;AVGPOST=0.9976;RSQ=0.9434;ERATE=0.0004;THETA=0.0005;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 104841654 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0442;AVGPOST=0.9994;RSQ=0.9938;ERATE=0.0004;THETA=0.0003;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 104842030 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104842195 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7150;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104842285 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5676;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104842318 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.803;LDAF=0.0028;AVGPOST=0.9972;RSQ=0.5986;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104842358 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8010;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104842433 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3122;AVGPOST=0.9947;RSQ=0.9898;ERATE=0.0010;THETA=0.0046;AC=678;AN=2184 GT:DS:GL:BD 0.31043956 0 1 104842465 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5316;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104842509 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4399;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104842557 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4489;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104842583 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3274;AVGPOST=0.9990;RSQ=0.9980;ERATE=0.0004;THETA=0.0006;AC=714;AN=2184 GT:DS:GL:BD 0.32692307 0 1 104842764 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0004;THETA=0.0028;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104842842 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2531;AVGPOST=0.9976;RSQ=0.9945;ERATE=0.0006;THETA=0.0005;AC=553;AN=2184 GT:DS:GL:BD 0.25320512 0 1 104842874 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104842928 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.753;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6229;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104843005 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104843042 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.674;LDAF=0.0028;AVGPOST=0.9953;RSQ=0.4030;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104843390 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0048;AVGPOST=0.9993;RSQ=0.9356;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104843515 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0021;AVGPOST=0.9983;RSQ=0.7286;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104843542 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.749;LDAF=0.0031;AVGPOST=0.9990;RSQ=0.8794;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104843593 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0004;AVGPOST=0.9992;RSQ=0.3142;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104843656 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.803;LDAF=0.0094;AVGPOST=0.9984;RSQ=0.9242;ERATE=0.0005;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 104843659 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5592;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104843688 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.985;LDAF=0.3380;AVGPOST=0.9904;RSQ=0.9854;ERATE=0.0003;THETA=0.0004;AC=728;AN=2184 GT:DS:GL:BD 0.33333334 0 1 104843733 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6940;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104843737 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104843803 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104843812 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9459;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104843819 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.6456;AVGPOST=0.9945;RSQ=0.9914;ERATE=0.0005;THETA=0.0004;AC=1411;AN=2184 GT:DS:GL:BD 0.64606225 1 1 104843892 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.8015;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104843903 . C CT 60 PASS INDEL;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5149;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104843918 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3548;AVGPOST=0.9973;RSQ=0.9949;ERATE=0.0010;THETA=0.0005;AC=773;AN=2184 GT:DS:GL:BD 0.35393772 0 1 104843940 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104843957 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104843997 rs35208245 GC G 1191 PASS INDEL;BAVGPOST=0.950;BRSQ=0.897;LDAF=0.2599;AVGPOST=0.9630;RSQ=0.9298;ERATE=0.0014;THETA=0.0004;AC=581;AN=2184 GT:DS:GL:BD 0.26602563 0 1 104844038 rs79016346 CCT C 27755 PASS INDEL;BAVGPOST=0.987;BRSQ=0.971;LDAF=0.2813;AVGPOST=0.9943;RSQ=0.9881;ERATE=0.0008;THETA=0.0003;AC=616;AN=2184 GT:DS:GL:BD 0.28205130 0 1 104844041 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104844061 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.6921;ERATE=0.0010;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104844172 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104844185 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9552;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104844246 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.798;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7189;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104844252 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9436;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104844314 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.6102;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104844325 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104844435 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104844479 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9882;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 104844540 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104844712 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0008;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104844741 . A ACT 43 PASS INDEL;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104844919 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8380;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104844952 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6138;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104845074 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6237;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104845125 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104845143 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.7980;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 104845164 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.846;LDAF=0.0073;AVGPOST=0.9989;RSQ=0.9380;ERATE=0.0005;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 104845234 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0026;AVGPOST=0.9992;RSQ=0.8723;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 104845297 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.921;LDAF=0.0178;AVGPOST=0.9969;RSQ=0.9290;ERATE=0.0004;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 104845401 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.795;LDAF=0.0066;AVGPOST=0.9967;RSQ=0.7899;ERATE=0.0005;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 104845464 rs34342465 TC T 41 PASS INDEL;BAVGPOST=1.000;BRSQ=0.689;LDAF=0.0014;AVGPOST=0.9979;RSQ=0.3621;ERATE=0.0006;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104845468 . G GC 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5709;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104845645 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0301;AVGPOST=0.9998;RSQ=0.9963;ERATE=0.0003;THETA=0.0004;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 104845695 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.8006;ERATE=0.0006;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 104845780 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0132;AVGPOST=0.9995;RSQ=0.9822;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 104845825 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0034;AVGPOST=0.9946;RSQ=0.3328;ERATE=0.0008;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 104846197 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.488;LDAF=0.0017;AVGPOST=0.9978;RSQ=0.4323;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 104846212 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.963;LDAF=0.2830;AVGPOST=0.9887;RSQ=0.9772;ERATE=0.0011;THETA=0.0002;AC=619;AN=2184 GT:DS:GL:BD 0.28342491 0 1 104846341 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3301;AVGPOST=0.9905;RSQ=0.9807;ERATE=0.0015;THETA=0.0005;AC=715;AN=2184 GT:DS:GL:BD 0.32738096 0 1 104846346 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.635;LDAF=0.0047;AVGPOST=0.9968;RSQ=0.7201;ERATE=0.0005;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 104846411 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.573;LDAF=0.0053;AVGPOST=0.9943;RSQ=0.5961;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 104846452 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.540;LDAF=0.0023;AVGPOST=0.9965;RSQ=0.3331;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 104846481 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0013;AVGPOST=0.9977;RSQ=0.3328;ERATE=0.0005;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 104846485 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0035;AVGPOST=0.9973;RSQ=0.6885;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0